MAST - Motif Alignment and Search Tool
MAST version 4.1.1 (Release date: Tue Apr 21 15:00:06 PDT 2009)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme.nbcr.net.
REFERENCE
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
DATABASE AND MOTIFS
DATABASE ./seed.fasta (peptide)
Last updated on Sat May 15 23:09:07 2010
Database contains 23 sequences, 8098 residues
MOTIFS ./memeout.txt (peptide)
MOTIF WIDTH BEST POSSIBLE MATCH
----- ----- -------------------
1 50 PQETLDAIREYFVAIKGPLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
2 50 NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQEAADLI
3 50 IKDRIADSFLQQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.08
3 0.10 0.12
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
SECTION I: HIGH-SCORING SEQUENCES
- Each of the following 23 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
- finding the score of the single best match of each motif
to the sequence (best matches may overlap),
- calculating the sequence p-value of each score,
- forming the product of the p-values,
- taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
| Links | Sequence Name | Description | E-value | Length
|
|---|
|
| IDH_BACSU/21-418
|
| 1.8e-150
| 398
|
|
| IDH1_COLMA/28-411
|
| 1.2e-142
| 384
|
|
| IDH_THET8/21-351
|
| 1.3e-57
| 331
|
|
| IDH3A_BOVIN/33-358
|
| 1.2e-39
| 326
|
|
| LYS12_YEAST/25-367
|
| 4.4e-33
| 343
|
|
| IDH2_YEAST/38-365
|
| 2.8e-32
| 328
|
|
| LEU3_THEAQ/2-344
|
| 1.7e-26
| 343
|
|
| LEU3_SPIPL/6-355
|
| 1e-24
| 350
|
|
| LEU3_BACSU/4-352
|
| 4.7e-24
| 349
|
|
| LEU3_BACCO/4-351
|
| 1.1e-23
| 348
|
|
| LEU3_BRANA/45-394
|
| 2.3e-23
| 350
|
|
| LEU3_LACLA/4-340
|
| 1.9e-22
| 337
|
|
| LEU3_AGRT5/5-361
|
| 2.2e-22
| 357
|
|
| LEU3_CLOPA/5-353
|
| 1e-21
| 349
|
|
| LEU3_ECOLI/6-355
|
| 3.6e-21
| 350
|
|
| LEU3_LEPIN/3-354
|
| 6.5e-21
| 352
|
|
| LEU3_BACCA/5-348
|
| 6e-19
| 344
|
|
| LEU3_BACME/4-349
|
| 1.9e-16
| 346
|
|
| LEU3_SCHPO/5-363
|
| 4.6e-14
| 359
|
|
| LEU3_NEUCR/5-358
|
| 3.3e-13
| 354
|
|
| LEU3_YARLI/14-367
|
| 2.1e-06
| 354
|
|
| LEU3_CANBO/7-356
|
| 4.5e-06
| 350
|
|
| IDHC_SOYBN/8-403
|
| 1.6
| 396
|
SECTION II: MOTIF DIAGRAMS
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- Spacers and motif occurences are indicated by
- occurrence of motif `n' with p-value less than 0.0001.
- Sequences longer than 1000 are not shown to scale and are indicated by thicker lines.
| Links | Name | Expect | Motifs
|
|---|
|
| IDH_BACSU/21-418
| 1.8e-150
|
|
|
| IDH1_COLMA/28-411
| 1.2e-142
|
|
|
| IDH_THET8/21-351
| 1.3e-57
|
|
|
| IDH3A_BOVIN/33-358
| 1.2e-39
|
|
|
| LYS12_YEAST/25-367
| 4.4e-33
|
|
|
| IDH2_YEAST/38-365
| 2.8e-32
|
|
|
| LEU3_THEAQ/2-344
| 1.7e-26
|
|
|
| LEU3_SPIPL/6-355
| 1e-24
|
|
|
| LEU3_BACSU/4-352
| 4.7e-24
|
|
|
| LEU3_BACCO/4-351
| 1.1e-23
|
|
|
| LEU3_BRANA/45-394
| 2.3e-23
|
|
|
| LEU3_LACLA/4-340
| 1.9e-22
|
|
|
| LEU3_AGRT5/5-361
| 2.2e-22
|
|
|
| LEU3_CLOPA/5-353
| 1e-21
|
|
|
| LEU3_ECOLI/6-355
| 3.6e-21
|
|
|
| LEU3_LEPIN/3-354
| 6.5e-21
|
|
|
| LEU3_BACCA/5-348
| 6e-19
|
|
|
| LEU3_BACME/4-349
| 1.9e-16
|
|
|
| LEU3_SCHPO/5-363
| 4.6e-14
|
|
|
| LEU3_NEUCR/5-358
| 3.3e-13
|
|
|
| LEU3_YARLI/14-367
| 2.1e-06
|
|
|
| LEU3_CANBO/7-356
| 4.5e-06
|
|
|
| IDHC_SOYBN/8-403
| 1.6
|
|
| SCALE
|
| | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| 1 |
25 |
50 |
75 |
100 |
125 |
150 |
175 |
200 |
225 |
250 |
275 |
300 |
325 |
350 |
375 |
|
|---|
SECTION III: ANNOTATED SEQUENCES
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
- the motif number of the occurrence,
- the position p-value of the occurrence,
- the best possible match to the motif, and
- columns whose match to the motif has a positive score (indicated
by a plus sign).
IDH_BACSU/21-418
LENGTH = 398 COMBINED P-VALUE = 7.73e-152 E-VALUE = 1.8e-150
DIAGRAM: 55-[1]-155-[3]-2-[2]-36
[1]
6.6e-56
PQETLDAIREYFVAIKGPLT
++++++++++++++++++++
1 IIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLT
TPVGGGIRSLNVALRQEFDLYVCLRPCRWF
++++++++++++++++++++++++++++++
76 TPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFL
[3]
8.7e-57
IKDRIADSFLQQILLRPAEYSVIACMNLNGDYISDALAAQ
++++++++++++++++++++++++++++++++++++++++
226 DKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQ
[2]
4.8e-53
VGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQEAADLI
++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++
301 VGGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKVV
IDH1_COLMA/28-411
LENGTH = 384 COMBINED P-VALUE = 5.03e-144 E-VALUE = 1.2e-142
DIAGRAM: 57-[1]-142-[3]-[2]-35
[1]
3.6e-51
PQETLDAIREYFVAIKGP
++++++++++++++++++
1 IIPYIEGDGIGVDVTPPMLKVVNAAVAKAYGGDRKIEWLEVYAGEKATKMYDSETWLPEETLNILQEYKVSIKGP
LTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
++++++++++++++++++++++++++++++++
76 LTTPVGGGMSSLNVAIRQMLDLYVCQRPVQWFTGVPSPVKRPSEVDMVIFRENTEDIYAGIEYKAGSDKAKSVIK
[3] [
7.1e-55 9
IKDRIADSFLQQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGAN
+++++++++++++++++++++++++++++++++++++++++++++++++++
226 FGASLLHGGPWCSLKNPNTGKEIIIKDVIADAMLQQVLLRPAEYSVIATLNLNGDYLSDALAAQVGGIGIAPGAN
2]
.0e-52
YGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQEAADLI
+++++++++++++++++++++++++++++++++++++++++++++++++
301 LGDEVAVFEATHGTAPKYAGKNKVNPGSVILSAEMMLRHMGWLEADLLLKGMSGAIQAKTVTYDFERLMDDATLV
IDH_THET8/21-351
LENGTH = 331 COMBINED P-VALUE = 5.45e-59 E-VALUE = 1.3e-57
DIAGRAM: 49-[1]-98-[3]-[2]-34
[1]
1.5e-22
PQETLDAIREYFVAIKGPLTTPVGGG
++++++ ++ ++ +++++++++ +
1 LITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYG
IRSLNVALRQEFDLYVCLRPCRWF
+ ++ ++ + ++ +++++ +
76 EKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKI
[3]
3.1e-20
IKDRIADSFLQQILLRPAEYSVIACMNL
++ ++ +++ +++ + ++ +++
151 VRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNM
[2]
5.0e-29
NGDYISDALAAQVGGIGMAPGANYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQEAADLI
+++ ++++ ++++++++++++++ +++++++ ++ ++++++++ +++ ++++++++++++ ++++
226 NGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENA
IDH3A_BOVIN/33-358
LENGTH = 326 COMBINED P-VALUE = 5.06e-41 E-VALUE = 1.2e-39
DIAGRAM: 48-[1]-96-[3]-1-[2]-31
[1]
3.5e-14
PQETLDAIREYFVAIKGPLTTPVGGGI
+++ + + + ++++ +++ +
1 TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVAAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGH
RSLNVALRQEFDLYVCLRPCRWF
+ + ++ +++++ ++++
76 PSMNLLLRKTFDLYANVRPCVSIEGYKTPYHDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEAASKRIAEF
[3]
1.4e-13
IKDRIADSFLQQILLRPAEYSVIACMNLNGD
+ + + + ++ ++++ ++ ++
151 AFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGD
[2]
9.3e-26
YISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQEAADLI
++++ + ++++++ +++ +++++++ +++++++++++ +++ +++++++++++++ + ++
226 ILSDLCAGLIGGLGVTPSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAKIETACF
LYS12_YEAST/25-367
LENGTH = 343 COMBINED P-VALUE = 1.93e-34 E-VALUE = 4.4e-33
DIAGRAM: 55-[1]-107-[3]-[2]-31
[1]
4.0e-08
PQETLDAIREYFVAIKGPLT
+ +
1 TIGLIPGDGIGKEVIPAGKQVLENLNSKHGLSFNFIDLYAGFQTFQETGKALPDETVKVLKEQCQGALFGAVQSP
TPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ ++ ++ +++++++ +++ ++++
76 TTKVEGYSSPIVALRREMGLFANVRPVKSVEGEKGKPIDMVIVRENTEDLYIKIEKTYIDKATGTRVADATKRIS
[3]
3.1e-17
IKDRIADSFLQQI
+ + +++ +
151 EIATRRIATIALDIALKRLQTRGQATLTVTHKSNVLSQSDGLFREICKEVYESNKDKYGQIKYNEQIVDSMVYRL
[2]
1.6e-21
LLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGANYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMML
+ ++++ + ++ ++ +++ ++++++ ++ +++++ + + + + ++ ++++++++++++ + + ++++
226 FREPQCFDVIVAPNLYGDILSDGAAALVGSLGVVPSANVGPEIVIGEPCHGSAPDIAGKGIANPIATIRSTALML
RHMGWQEAADLI
++++ +++++ +
301 EFLGHNEAAQDIYKAVDANLREGSIKTPDLGGKASTQQVVDDV
IDH2_YEAST/38-365
LENGTH = 328 COMBINED P-VALUE = 1.22e-33 E-VALUE = 2.8e-32
DIAGRAM: 47-[1]-149-[2]-32
[1]
2.5e-16
PQETLDAIREYFVAIKGPLTTPVGGGIR
++ + +++ ++++ ++++++ +
1 TVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITKNLVALKGPLATPIGKGHR
SLNVALRQEFDLYVCLRPCRWF
+++ ++ + +++ +++
76 SLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYA
[2]
3.7e-26
NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQEAADLI
+++ ++++ ++ ++++++++++++ +++++++++ +++ + ++ +
226 DILSDLNSGLSAGSLGLTPSANIGHKISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAV
LEU3_THEAQ/2-344
LENGTH = 343 COMBINED P-VALUE = 7.58e-28 E-VALUE = 1.7e-26
DIAGRAM: 58-[1]-101-[3]-[2]-34
[1]
2.8e-06
PQETLDAIREYFVAIKG
+ ++ ++
1 RVAVLPGDGIGPEVTEAALRVLKALDEREGLGLTYETFPFGGAAIDGYGEPFPEVTRKGVEAAEAVLLGSVGGPK
PLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ + +++ ++++ +++ +
76 WDALPRKIRPESGLLALRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEA
[3]
1.9e-16
IKDRIADSFLQQILLR
++ +++ + ++
151 WNTERYSKPEVERVAKVAFEAARKRRRHLTSVDKANVLEVGEFWRKTVEEVHKGYPDVALDHQYVDAMAMHLVKN
[2]
2.2e-17
PAEYSVIACMNLNGDYISDALAAQVGGIGMAPGANYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHM
+++++++ + + ++ +++++ + + ++ +++ ++ + +++ ++ ++++++++++++ ++++++++++
226 PARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHA
GWQEAADLI
+
301 FGLVELARRVEAAVAKALRETPPPDLGGSAGTQAFTEEVLRHL
LEU3_SPIPL/6-355
LENGTH = 350 COMBINED P-VALUE = 4.52e-26 E-VALUE = 1e-24
DIAGRAM: 214-[3]-1-[2]-35
[3]
2.7e-16
IKDRIADSFLQ
+ ++ +
151 GKNEGSNTMAYGESEIDRIGRVGFETAKKRQGRLCSVDKANVLDVSQLWRDRIMALAADYPEVELSHLYVDNAAM
[2]
5.2e-18
QILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGC
+++ + ++ + + ++ ++ ++++++ + + +++ +++ + ++++ ++ +++++++++++++ ++++
226 QLVRWPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAA
MMLRHMGWQEAADLI
+++++ ++
301 MMLRYGLDEPAASDPVEKAVLKVLDWGYPTGDIMSEGMKAVGCRKWGICY
LEU3_BACSU/4-352
LENGTH = 349 COMBINED P-VALUE = 2.05e-25 E-VALUE = 4.7e-24
DIAGRAM: 58-[1]-106-[3]-1-[2]-34
[1]
1.1e-06
PQETLDAIREYFVAIKG
+++ ++
1 RIALLPGDGIGPEVLESATDVLKSVAERFNHEFEFEYGLIGGAAIDEHHNPLPEETVAACKNADAILLGAVGGPK
PLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ ++ ++++++ ++++ +
76 WDQNPSELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGLYFGQPSKRYVNTE
[3]
5.9e-15
IKDRIADSFLQ
+ + ++ +
151 GEQEAVDTLFYKRTEIERVIREGFKMAAARKGKVTSVDKANVLESSRLWREVAEDVAQEFPDVKLEHMLVDNAAM
[2]
5.4e-16
QILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGC
++ ++ ++++ + + ++ +++ + + + +++ +++ + + +++ ++ ++++++++ +++ +++++
226 QLIYAPNQFDVVVTENMFGDILSDEASMLTGSLGMLPSASLSSSGLHLFEPVHGSAPDIAGKGMANPFAAILSAA
MMLRHMGWQEAADLI
++++ ++ +
301 MLLRTSFGLEEEAKAVEDAVNKVLASGKRTRDLARSEEFSSTQAITEEV
LEU3_BACCO/4-351
LENGTH = 348 COMBINED P-VALUE = 4.89e-25 E-VALUE = 1.1e-23
DIAGRAM: 58-[1]-104-[3]-1-[2]-35
[1]
4.5e-06
PQETLDAIREYFVAIKG
+++ ++
1 KLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPK
PLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ ++ ++ +++ ++++ +
76 WDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGE
[3]
3.9e-14
IKDRIADSFLQQI
+ + ++ +++
151 NEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQL
[2]
5.1e-17
LLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMM
+ ++++ + + ++ +++ + + + +++ +++ ++ ++ + ++ +++++++++++++ ++++++
226 IANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALM
LRHMGWQEAADLI
+++ ++
301 LRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRL
LEU3_BRANA/45-394
LENGTH = 350 COMBINED P-VALUE = 9.79e-25 E-VALUE = 2.3e-23
DIAGRAM: 214-[3]-1-[2]-35
[3]
5.8e-14
IKDRIADSFLQ
+ + ++ +
151 GEEVGYNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRRRVTALAAEYPDVELSHMYVDNAAM
[2]
9.7e-19
QILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGC
+++ + ++ + + + ++ +++ + + + +++ +++ + ++++ ++ +++++++++++++ +++++
226 QLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAA
MMLRHMGWQEAADLI
+++ + + + +
301 MLLKYGLGEEKAAKRIEDAVLGALNKGFRTGDIYSAGTKLVGCKEMGEEV
LEU3_LACLA/4-340
LENGTH = 337 COMBINED P-VALUE = 8.16e-24 E-VALUE = 1.9e-22
DIAGRAM: 56-[1]-99-[3]-1-[2]-31
[1]
2.1e-07
PQETLDAIREYFVAIKGPL
++ ++ + ++ +
1 KIVTLAGDGIGPEIMSAGLSVLKAVSKKIDFEYELEAKDFGGIAIDKHGHPLPEETLQAVKNADAILLAAIGHPK
TTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+++ ++ +++ +++ +
76 YNNAKVRPEQGLLALRKELGLYANVRPLKIYPALKKLSPIRNVENVDFLVIRELTGGIYFGQHELADDKARDVND
[3]
5.8e-13
IKDRIADSFLQQILLRPAEY
+ ++ + + + + +
151 YSADEIRRILHFAFKSAQSRPRKLLTSVDKQNVLATSKLWRKMADEIADEYPDVRLEHQLVDSCAMLLITNPQQF
[2]
1.5e-15
SVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLRHMGWQ
+++ + ++ ++ +++ + ++ + ++ ++ + ++ + ++ ++++++++++++ + +++ +++++ +
226 DVIVTENLFGDILSDEASSLAGSLGVMPSSSHGFNGLALYEPIHGSAPDIAGKGIANPVSMILSIAMMLRESFGQ
EAADLI
+
301 EDGAAMIEKAVTQTFTDGILTKDLGGTATTKEMTEAI
LEU3_AGRT5/5-361
LENGTH = 357 COMBINED P-VALUE = 9.50e-24 E-VALUE = 2.2e-22
DIAGRAM: 58-[1]-107-[3]-7-[2]-35
[1]
6.8e-06
PQETLDAIREYFVAIKG
+ +++ ++
1 SLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDADMEKALAADAILFGAVGGPK
PLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ + ++ + +++ +++ +
76 WDGVPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASSLKPELVEGLDILIVRELTGGVYFGEPKQIIDLGN
[3]
1.7e-19
IKDRIADSFL
+ + +++
151 GQKRGIDTQIYDTFEIERIASVAFELARSRDNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGG
[2]
1.4e-10
QQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPS
++++ ++ ++++ + ++ ++ +++ ++ + + +++ +++ + ++ + ++ +++++++ ++++
226 MQLVRKPKQFDVIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSIANPI
SVILSGCMMLRHMGWQEAADLI
+ + ++ +++
301 AMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDAV
LEU3_CLOPA/5-353
LENGTH = 349 COMBINED P-VALUE = 4.54e-23 E-VALUE = 1e-21
DIAGRAM: 213-[3]-1-[2]-35
[3]
1.1e-13
IKDRIADSFLQQ
+ ++ ++
151 VETAFDTEKYNVDEVKRIAHSAFKAAMKRRKKVTSVDKANVLDASRLWRKTVNEVSKEYPEVELSHLYVDNTAMQ
[2]
4.6e-17
ILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCM
++ +++ ++++ + + ++ +++ + + + +++ + +++ ++ + ++ +++++++++++++ ++++++
226 LVRKPSQFDVILTNNIFGDILSDEASMITGSIGMLASSSIREDSFGMYEPIHGSAPDIAGLDIANPLAQILSAAM
MLRHMGWQEAADLI
+ ++ +
301 LMEYSLDMSEAARDVEAAVEKVLNEGYRTADIYIEGTKKVGTSEMGNLV
LEU3_ECOLI/6-355
LENGTH = 350 COMBINED P-VALUE = 1.55e-22 E-VALUE = 3.6e-21
DIAGRAM: 59-[1]-106-[3]-1-[2]-34
[1]
5.4e-06
PQETLDAIREYFVAIK
+ ++ + + +
1 HIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPK
GPLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ + ++ + +++ +++ +
76 WEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGS
[3]
3.2e-15
IKDRIADSFL
+ + ++
151 GQYEKAFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPDVELAHMYIDNAT
[2]
1.9e-13
QQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSG
+++ ++ ++++ + ++ ++ +++ + + + ++ +++ + + ++ + + ++++++++++++ +++
226 MQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSL
CMMLRHMGWQEAADLI
++++++ +
301 ALLLRYSLDADDAACAIERAINRALEEGIRTGDLARGAAAVSTDEMGDII
LEU3_LEPIN/3-354
LENGTH = 352 COMBINED P-VALUE = 2.84e-22 E-VALUE = 6.5e-21
DIAGRAM: 59-[1]-107-[3]-1-[2]-35
[1]
1.9e-07
PQETLDAIREYFVAIK
++ ++ + + +
1 NVAVLSGDGIGPEVMEIAISVLKKALGAKVSEFQFKEGFVGGIAIDKTGHPLPPETLKLCEESSAILFGSVGGPK
GPLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ + ++ +++++ +++ +
76 WETLPPEKQPERGALLPLRKHFDLFANLRPAIIYPELKNASPVRSDIIGNGLDILILRELTGGIYFGQPKGREGS
[3]
3.5e-14
IKDRIADSF
++ ++
151 GQEEFAYDTMKYSRREIERIAKVAFQAARKRNNKVTSIDKANVLTTSVFWKEVVIELHKKEFSDVQLNHLYVDNA
[2]
9.4e-13
LQQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILS
+++ + ++++ + + ++ +++ + + + +++ +++ + + ++ + + ++++++++ +++ ++
226 AMQLIVNPKQFDVVLCENMFGDILSDEASIITGSIGMLPSASLSESGFGLYEPSGGSAPDIAGKGVANPIAQVLS
GCMMLRHMGWQEAADLI
+++++++ +
301 AALMLRYSFSMEEEANKIETAVRKTIASGKRTRDIAEVGSTIVGTKEIGQLI
LEU3_BACCA/5-348
LENGTH = 344 COMBINED P-VALUE = 2.60e-20 E-VALUE = 6e-19
DIAGRAM: 58-[1]-103-[3]-1-[2]-32
[1]
2.6e-07
PQETLDAIREYFVAIKG
+ ++ ++
1 RIAVLPGDGIGKEVTSGAVEVLKAVGIRFGHEFTFEYGLIGGAAIDEAGTPLPEETVRLCRESDAVLLGAVGGPK
PLTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ +++ ++++++ ++++ +
76 WDDNPPHLRPEKGLLAIRKQLDLYANLRPVVCYDSLVSRSPLKPDLVQGVDFVIVRELTGGIYFGQPSAVVENGE
[3]
1.8e-11
IKDRIADSFLQQIL
+ +++
151 EKAVDTLLYKKEEIERIVRMAFELARGRRKKVTSVDKANVLSSSRLWREVAEEVANEFPDVTLEHMLVDMRMQLI
[2]
1.5e-13
LRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMML
+ ++++ + + ++ +++ + + + +++ +++ + + + ++ ++++++ +++++ ++++++++
226 RAPKQFDVIVTENMFGDILSDEASMLSGSLGMLPSASLSASGPSLYEPVHGSAPDIAGMNKANPIAAILSAAMML
RHMGWQEAADLI
+ + +
301 RLSFGLTAEAGGRARVWQALALGSGSRLGQRRPHLSTNEMVEEI
LEU3_BACME/4-349
LENGTH = 346 COMBINED P-VALUE = 8.28e-18 E-VALUE = 1.9e-16
DIAGRAM: 56-[1]-104-[3]-1-[2]-35
[1]
9.3e-07
PQETLDAIREYFVAIKGPL
++ ++
1 KVAVLPGDGGQSNQRRCCRLKAIGERLRHQFEFTYGLIGGAAIDEAGSSSSRSTIETCNEADAVLLGSVGGPKWD
TTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ +++ ++++++ ++++ +
76 RFPSHLRPEKGLLAIRKELDLYANLRPVTFYDSLADASPLKKEYIEGVDFIIVRELTGGLYFGKPSDRRTEGNKE
[3]
3.9e-14
IKDRIADSFLQQILL
+ + ++ +++
151 TVVDTLFYKRTEIERIIASIDTAVNRRKKVTSVDKANVLESSRVWREVAEEVAKDYPDVELEHMLVDSAAMQLIR
[2]
7.8e-09
RPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSVILSGCMMLR
+ ++++ + + ++ +++ + + + +++ +++ ++ + + ++ ++++++++++++ ++ ++
226 NPKYFDVVVTENMFGDILSDEASMLTGSLGMLPSASLTADGPSLYEPVHGSAPDIAGQNKANPIAAAILSAAMLL
HMGWQEAADLI
301 RHSFGLEKEAAVIEQAVESVLHAGHRTADLADGNHYLGTDKMVEVI
LEU3_SCHPO/5-363
LENGTH = 359 COMBINED P-VALUE = 1.99e-15 E-VALUE = 4.6e-14
DIAGRAM: 57-[1]-107-[3]-8-[2]-37
[1]
2.0e-05
PQETLDAIREYFVAIKGP
+++ + ++ ++
1 KIVVLPGDHIGPEIVASALEVLKVVEKKRPELKLEFEEHKIGGASIDAYGTPLTDETVKACLEADGVLLGAVGGP
LTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
+ ++ + + ++++
76 EWTNPNCRPEQGLLKLRKSMGVWANLRPCNFASKSLVKYSPLKPEIVEGVDFCVVRELTGGCYFGERTEDNGSGY
[3]
1.1e-08
IKDRIADSFLQ
+ + +
151 AMDTWPYSLEEVSRIARLAAWLAETSNPPAPVTLLDKANVLATSRLWRKTVAKIFKEEYPHLTLKNQLIDSAAML
[2]
3.7e-13
QILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPS
+ ++ + ++ ++ +++ + + + ++ +++ + + + + ++ ++++++++++++
226 LVKSPRTLNGVVLTDNLFGDIISDEASVIPGSLGLLPSASLSGVVGKSEEKVHCLVEPIHGSAPDIAGKGIVNPV
SVILSGCMMLRHMGWQEAADLI
++++ +++++
301 GTILSASLLLRYGLNAPKEAEAIEAAVRKVLDDTSIGGRGLYTRDLGGEASTADITKAV
LEU3_NEUCR/5-358
LENGTH = 354 COMBINED P-VALUE = 1.44e-14 E-VALUE = 3.3e-13
DIAGRAM: 216-[3]-7-[2]-31
[3]
1.9e-09
IKDRIADSF
+ +
151 GYACDTEPYSRAEIVRIARLAGFLALAKNPPAKVWSLDKANVLATSRLWRKTVTDVISKEFPQLQLEHQLIDSAA
[2]
3.6e-13
LQQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNP
+ + ++++ ++ ++ +++ + + + ++ +++ + ++ + ++ ++++ +++++++
226 MLLVKNPRALNGVVITSNLFGDIISDEASVIPGSIGLLPSASLGGIPDGKGKCNGIYEPIHGSAPDISGKGIVNP
SSVILSGCMMLRHMGWQEAADLI
+++ ++++++ +
301 VGTILSVAMMLRYSLNLPKEADAVEAAVKAAIDNGTKTKDLGGNATTSDMGNAV
LEU3_YARLI/14-367
LENGTH = 354 COMBINED P-VALUE = 8.94e-08 E-VALUE = 2.1e-06
DIAGRAM: 218-[3]-6-[2]-30
[3]
1.9e-08
IKDRIAD
+
151 GSGVASDTETYSVPEVERIARMAAFLALQHNPPLPVWSLDKANVLASSRLWRKTVTRVLKDEFPQLELNHQLIDS
[2]
7.5e-07
SFLQQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVN
+ + ++++++ ++ +++ + + + ++ +++ + ++ + ++ +++ +
226 AAMILIKQPSKMNGIIITTNMFGDIISDEASVIPGSLGLLPSASLASLPDTNEAFGLYEPCHGSAPDLGKQKVNP
PSSVILSGCMMLRHMGWQEAADLI
++ + ++ + + + + +
301 IATILSAAMMLKFSLNMKPAGDAVEAAVKESVEAGITTADIGGSSSTSEVGDLL
LEU3_CANBO/7-356
LENGTH = 350 COMBINED P-VALUE = 1.98e-07 E-VALUE = 4.5e-06
DIAGRAM: 57-[1]-107-[3]-6-[2]-30
[1]
7.7e-06
PQETLDAIREYFVAIKGP
++ + ++ ++
1 KIVLLPGDHVGVEVVEEAVKILKSISEVKPEIQFKFENHLIGGAAIDATGVPLPDEALEAAKKSDAVLLGAVGGP
LTTPVGGGIRSLNVALRQEFDLYVCLRPCRWF
++ ++ +++ ++++
76 KWGTGEVRPEQGLLKIRKELNLYANLRPCNFASDKLLDLSPLKSDIVKGTDFTVVRELVGGIYFGDRVEDDGSGF
[3]
1.3e-07
IKDRIADSFLQ
+ +
151 ASDSESYSVPEVERITRMAAFLSLQNDPPLPIWSLDKANVLASSRLWRKTVDRVIKEEFPKLTVQHQLIDSAAMI
[2]
3.0e-05
QILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA NYGDSCAIFEATHGTAPKYAGQDKVNPSSV
+ ++++ + ++ +++ + + + ++ +++ + ++ + ++ +++ +
226 LVKSPTKLNGIVITNNMFGDIISDEASVIPGSLGLLPSASLASLPDTNQAFGLYEPCHGSAPDLPKNKVNPIATI
ILSGCMMLRHMGWQEAADLI
+ + ++ + ++ +
301 LSAAMMLKLSLNLVKEGNAVEEAVRKVLDQGIMTGDLGGNNSTTEVGDAI
IDHC_SOYBN/8-403
LENGTH = 396 COMBINED P-VALUE = 6.89e-02 E-VALUE = 1.6
DIAGRAM: 240-[3]-106
[3]
2.4e-05
IKDRIADSFLQQILLRPAEYSVIACMNLNGDYISDALAAQVGGIGMAPGA
++ + + ++ + ++ ++ ++ + ++ +
226 VYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIE
Debugging Information
CPU: kodomo-count
Time 0.124007 secs.
mast ./memeout.txt -d ./seed.fasta -ev 10.000000 -mt 0.000100
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Links to Entrez database at NCBI
Links to sequence scores (section I)
Links to motif diagrams (section II)
Links to sequence/motif annotated alignments (section III)
This information