RID: B1KBX76B01R Job Title:sp|P03317|541-1347 Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: sp|P03317|541-1347 Query ID: lcl|Query_551219 Length: 807 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 1696 1696 100% 0.0 100.00 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 1668 1668 100% 0.0 98.02 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 1177 1177 100% 0.0 67.91 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 1018 1018 99% 0.0 60.57 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 1001 1001 98% 0.0 59.88 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 1000 1000 98% 0.0 60.00 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 976 976 99% 0.0 58.40 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 974 974 98% 0.0 58.60 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 968 968 99% 0.0 57.90 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 967 967 99% 0.0 57.53 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 964 964 99% 0.0 57.41 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 961 961 99% 0.0 57.28 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 960 960 99% 0.0 58.48 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 929 929 99% 0.0 56.79 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 889 889 99% 0.0 55.60 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 883 883 99% 0.0 56.04 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 882 882 99% 0.0 55.79 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 881 881 99% 0.0 55.31 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 880 880 99% 0.0 55.67 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 875 875 99% 0.0 54.79 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 872 872 99% 0.0 55.06 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 872 872 99% 0.0 54.79 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 854 854 99% 0.0 54.81 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 630 630 99% 0.0 42.38 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 623 623 99% 0.0 42.57 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 74.3 74.3 34% 3e-12 27.61 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 72.0 72.0 32% 2e-11 26.98 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=186 kDa... Cucumber gre... NA 12236 71.6 71.6 33% 2e-11 28.98 1648 P69514.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 65.1 65.1 31% 2e-09 28.47 1616 P90211.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 57.0 57.0 30% 6e-07 26.69 1629 P89202.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 652939 55.1 55.1 35% 3e-06 25.90 1707 Q9J942.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa... Tobacco ratt... NA 12298 54.7 54.7 35% 3e-06 25.90 1707 P05080.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 53.9 53.9 33% 6e-06 25.80 1601 Q88920.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 53.9 53.9 30% 6e-06 24.82 3094 Q08534.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 53.1 53.1 26% 9e-06 23.53 1609 P18339.2 RecName: Full=Replicase large subunit; AltName:... Potato mop-t... NA 652839 52.4 52.4 30% 2e-05 26.67 1812 Q9QBU0.3 RecName: Full=Methyltransferase/helicase/RNA-directed RNA... Raspberry bu... NA 652675 51.6 51.6 30% 3e-05 27.01 1694 Q05983.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138314 49.3 49.3 31% 1e-04 26.26 1616 Q9YKD6.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138312 48.9 48.9 31% 2e-04 26.06 1616 P89676.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12252 48.5 48.5 31% 2e-04 26.26 1616 P03587.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato mosai... NA 138311 48.5 48.5 31% 2e-04 26.06 1616 Q9Q1T8.2 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 48.5 48.5 32% 2e-04 24.91 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tomato brown... NA 2654645 48.1 48.1 32% 4e-04 25.27 1615 A0A0S2T050.1 RecName: Full=Replication protein 1a; Includes: RecName:... Broad bean m... NA 12301 47.4 47.4 18% 6e-04 27.50 966 Q00020.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cowpea chlor... NA 12303 45.8 45.8 18% 0.001 31.21 958 P27752.1 RecName: Full=Replication protein 1a; Includes: RecName:... Brome mosaic... NA 12302 45.1 45.1 29% 0.002 24.35 961 P03588.1 RecName: Full=Replicase large subunit; AltName:... Peanut clump... NA 652837 43.5 43.5 32% 0.008 27.43 1672 Q84687.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138309 42.7 42.7 32% 0.014 26.22 1616 Q9YQ08.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117124 42.0 42.0 12% 0.021 28.04 993 O40976.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12307 42.0 42.0 12% 0.022 28.04 993 P17769.2 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 12309 42.0 42.0 12% 0.022 28.04 993 P20122.1 RecName: Full=Replication protein 1a; Includes: RecName:... Cucumber mos... NA 117113 42.0 42.0 12% 0.023 28.04 993 Q83270.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12251 42.0 42.0 32% 0.024 26.22 1616 O93058.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 12243 42.0 42.0 32% 0.026 26.22 1616 P03586.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mosa... NA 138310 42.0 42.0 32% 0.028 25.96 1616 Q98745.1 RecName: Full=Replication protein 1a; Includes: RecName:... Tobacco stre... NA 12318 41.6 41.6 16% 0.032 26.24 1094 P89680.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 541 to 1347 Score:1696 bits(4391), Expect:0.0, Method:Compositional matrix adjust., Identities:807/807(100%), Positives:807/807(100%), Gaps:0/807(0%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY Sbjct 541 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 600 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY Sbjct 601 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 660 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE Sbjct 661 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 720 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN Sbjct 721 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 780 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE Sbjct 781 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 840 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL Sbjct 841 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 900 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT Sbjct 901 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 960 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV Sbjct 961 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 1020 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK Sbjct 1021 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 1080 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGKGTQLDLQTGR 600 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGKGTQLDLQTGR Sbjct 1081 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGKGTQLDLQTGR 1140 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI Sbjct 1141 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 1200 Query 661 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 720 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA Sbjct 1201 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 1260 Query 721 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 780 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS Sbjct 1261 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 1320 Query 781 RTRQFTPHHLNCVISSVYEGTRDGVGA 807 RTRQFTPHHLNCVISSVYEGTRDGVGA Sbjct 1321 RTRQFTPHHLNCVISSVYEGTRDGVGA 1347 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 541 to 1347 Score:1668 bits(4319), Expect:0.0, Method:Compositional matrix adjust., Identities:791/807(98%), Positives:799/807(99%), Gaps:0/807(0%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 ALVETPRGHVRIIPQANDRMIGQYIVVSP SVLKNAKLAPAHPLADQVKIITHSGR+GRY Sbjct 541 ALVETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRY 600 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVEPYDAKVLMPAG AVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY Sbjct 601 AVEPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 660 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE Sbjct 661 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 720 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN Sbjct 721 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 780 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDP QCGFFNMMQLKVHFNHPE Sbjct 781 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPE 840 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +DICTKTFYK+ISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL Sbjct 841 RDICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 900 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNEN LYAITSEHVNVLLTRT Sbjct 901 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRT 960 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 EDRLVWKTLQGDPWIKQ TN+PKGNFQATIEDWEAEHKGIIAAINSP PR NPFSCKTNV Sbjct 961 EDRLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNV 1020 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK Sbjct 1021 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 1080 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGKGTQLDLQTGR 600 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHA+AAELSRRFPVFQLAGKGTQLDLQTGR Sbjct 1081 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFPVFQLAGKGTQLDLQTGR 1140 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 TRVISAQHNLVPVNRNLPHALVPE+KEKQPGPV+KFLNQFKHHSVLVVSEEKIEAP KRI Sbjct 1141 TRVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPHKRI 1200 Query 661 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 720 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA Sbjct 1201 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 1260 Query 721 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 780 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARP+CVSSNTEMYLIFRQLDNS Sbjct 1261 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQLDNS 1320 Query 781 RTRQFTPHHLNCVISSVYEGTRDGVGA 807 RTRQFTPHHLNCVISSVYEGTRDGVGA Sbjct 1321 RTRQFTPHHLNCVISSVYEGTRDGVGA 1347 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 540 to 1345 Score:1177 bits(3044), Expect:0.0, Method:Compositional matrix adjust., Identities:548/807(68%), Positives:658/807(81%), Gaps:1/807(0%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 ALVETPRG ++IIPQ D IG Y V+SP +VL+N +L P H LA+QVKIITH GR+GRY Sbjct 540 ALVETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRY 599 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 +VEPYDAKVL+P G + W F ALSESATLVYNEREF+NRKL+HIA G AKNTEEEQY Sbjct 600 SVEPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQY 659 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 KV KA+ + EYV+DVD ++CVK+E A GLVL GELTNPPYHELA EGL+TRPA PY +E Sbjct 660 KVCKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIE 719 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 T+GVIGTPGSGKSAIIKSTVT +DLVTSGKKENC+EIE DV ++RGM I ++TVDSV+LN Sbjct 720 TLGVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLN 779 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 G KAV+VLYVDEAFACHAG L+ALIAIV+PR+KVVLCGDP Q FFN+MQLKV+FN+PE Sbjct 780 GWKKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPE 839 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +D+CT T YKYISRRCTQPVTAIVSTLHYDGKM+TTNPCK+ IEID+ G+TKPK GDI+L Sbjct 840 RDLCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVL 899 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQ QIDYPG AASQGLTR+GVYAVRQKVNENPLYA SEHVNVLLTRT Sbjct 900 TCFRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRT 959 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 EDR+VWKTLQGDPWIK TN+PKGNF AT+E+W+AEH+ I+ AINS + ++PF+ K N Sbjct 960 EDRIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNT 1019 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAKA+ PIL TAGI LT QW +LFPQF +D+P+S +YALDVIC K FGMDL+SG+FS+ Sbjct 1020 CWAKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSR 1079 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGKGTQLDLQTGR 600 IPLT+HPAD R AHWDNSPG +K+GY+ A+ +++PV+ AGKG Q+ GR Sbjct 1080 PEIPLTFHPADVGRVRAHWDNSPGGQKFGYNKAVIPT-CKKYPVYLRAGKGDQILPIYGR 1138 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 V SA++NLVP+NRNLPH+L ++K+ P+ KFLNQ HS+L+VS+E KRI Sbjct 1139 VSVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCVSKRI 1198 Query 661 EWIAPIGIAGADKNYNLAFGFPPQARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 720 W+AP+G+ GAD N++L FGFPP +RYDLV +N+G YR HH+QQCE+HA ++TL+RSA Sbjct 1199 TWVAPLGVRGADHNHDLHFGFPPLSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSA 1258 Query 721 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 780 LNCL PGGTL +K+YG+AD NSEDVV +LARKFVR SA RP C NTEM+ +FRQLDN Sbjct 1259 LNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFRQLDND 1318 Query 781 RTRQFTPHHLNCVISSVYEGTRDGVGA 807 R RQFT HHLN +S++++ +DG GA Sbjct 1319 RERQFTQHHLNLAVSNIFDNYKDGSGA 1345 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1328 Score:1018 bits(2633), Expect:0.0, Method:Compositional matrix adjust., Identities:487/804(61%), Positives:606/804(75%), Gaps:17/804(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPR +++ Q ND ++G Y+V+SP +VLK++KLAP HPLA+QVKIITH+GR+GRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 V+ YD +VL+P G A+P PEF ALSESAT+VYNEREFVNRKLYHIA+HGP+ NT+EE Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 + +AE + EYVFDVDKK CVK+EEASGLVL GELTNPP+HE A EGLK RP+ PYK Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 +GV G PGSGKSAIIKS VT DLVTSGKKENC+EI DV + RG+ I +KTVDS++LN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC +AV++LYVDEAFACH+G LLALIA+V+PR KVVLCGDP QCGFFNMMQLKV+FNH Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNH-- 835 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ +K ISRRCT+PVTAIVSTLHY GKM+TTNPC K I ID TG TKPKPGDI+L Sbjct 836 -NICTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVL 894 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQ+DY GHEVMTAAASQGLTRKGVYAVRQKVNENPLYA SEHVNVLLTRT Sbjct 895 TCFRGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRT 954 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 EDRLVWKTL GDPWIK +NIP+GNF AT+E+W+ EH I+ I P + F K NV Sbjct 955 EDRLVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAFQNKANV 1014 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK+L P+L TAGI LT +WS + F +D+ +S + AL+ IC K++G+DL SGLFS Sbjct 1015 CWAKSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSA 1074 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 + L Y HWDN PG R YG++ A AA L R L G+ G Q + Sbjct 1075 PKVSLYYEN-------NHWDNRPGGRMYGFNAATAARLEARHTF--LKGQWHTGKQAVIA 1125 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 + + +S N++P+NR LPHALV EYK + V+ +N+ + + VL+VSE + PR Sbjct 1126 ERKIQPLSVLDNVIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPR 1185 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 +R+ W++P+ + GAD+ Y+L+ G P A R+DLVF+NI T++R HH+QQC DHA L+ L Sbjct 1186 RRVTWLSPLNVTGADRCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQML 1245 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 AL L PGG+L++++YGYAD+ SE VV++L+RKF RPDCV+SNTE++L+F Sbjct 1246 GGDALRLLKPGGSLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSN 1305 Query 777 LDNSRTRQFTPHHLNCVISSVYEG 800 DN + R T H +N +S+VY G Sbjct 1306 FDNGK-RPSTLHQMNTKLSAVYAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1322 Score:1001 bits(2587), Expect:0.0, Method:Compositional matrix adjust., Identities:479/800(60%), Positives:598/800(74%), Gaps:14/800(1%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPR +++ PQA+D +IG Y+++SP +VLK+ KLAP HPLA+QV ++THSGRSGRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 V+ YD +VL+P G A+P EF ALSESAT+VYNEREF+NRKL+HIA++GPA NT+EE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 + +AE AETEYVFDVDKK C+KKEEASGLVL+G+L NPP+HE A EGLK RPA PY Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT RDLV SGKKENC+EI DV R RG+ +T++TVDS++LN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC + VE LYVDEAFACH+G LLALIA+VRP KVVLCGDP QCGFFN+MQLKVH+NH Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNH-- 832 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ +K ISRRCT PVTAIVSTLHY GKM+TTN C I+ID TG++KP GDI+L Sbjct 833 -NICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 891 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRT Sbjct 892 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 951 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E+RLVWKTL GDPWIK TN+P+G+F AT+E+W+ EH GI+ +N +PF K V Sbjct 952 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKV 1011 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L +L TAGI +T +W+ + F +D+ +S AL+ IC +++G+DL SGLFS Sbjct 1012 CWAKCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSA 1070 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQ-LAGKGTQLDLQTG 599 QS+ L Y HWDN PG R YG++H +A + + RFP + G QL++ Sbjct 1071 QSVSLFYEN-------NHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPER 1123 Query 600 RTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKR 659 + + SA+ N+VP NR LPHALV Y++ + V+ L + H +L+VSE + P KR Sbjct 1124 KLQPFSAECNIVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKR 1183 Query 660 IEWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 718 + WIAP ++GAD+ Y+L G P A RYDLVF+NI T+YR HH+QQC DH+ L+ L Sbjct 1184 VFWIAPPRVSGADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGG 1243 Query 719 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 778 +L+ L PGG+L++++YGYADR SE VVTALARKF RP CV+SNTE++L+F D Sbjct 1244 DSLHLLRPGGSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFD 1303 Query 779 NSRTRQFTPHHLNCVISSVY 798 N R R T H N +SS+Y Sbjct 1304 NGR-RAVTLHQANQKLSSMY 1322 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1322 Score:1000 bits(2586), Expect:0.0, Method:Compositional matrix adjust., Identities:480/800(60%), Positives:597/800(74%), Gaps:14/800(1%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPR +++ PQA+D +IG Y+++SP +VLK+ KLAP HPLA+QV ++THSGRSGRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 V+ YD +VL+P G A+P EF ALSESAT+VYNEREF+NRKL+HIA++GPA NT+EE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 + +AE AETEYVFDVDKK C+KKEEASGLVL+G+L NPP+HE A EGLK RPA PY Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT RDLV SGKKENC+EI DV R RG+ +T++TVDS++LN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC K VE LYVDEAFACH+G LLALIA+VRP KVVLCGDP QCGFFN+MQLKVH+NH Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNH-- 832 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ +K ISRRCT PVTAIVSTLHY GKM+TTN C I+ID TG++KP GDI+L Sbjct 833 -NICTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVL 891 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLY+ SEHVNVLLTRT Sbjct 892 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRT 951 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E+RLVWKTL GDPWIK TN+P+G+F AT+E+W EH GI+ +N +PF K V Sbjct 952 ENRLVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKV 1011 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L +L TAGI +T +W+ + F +D+ +S AL+ IC +++G+DL SGLFS Sbjct 1012 CWAKCLVQVLETAGIRMTADEWNTIL-AFREDRAYSPEVALNEICTRYYGVDLDSGLFSA 1070 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQ-LAGKGTQLDLQTG 599 QS+ L Y HWDN PG R YG++H +A + + RFP + G QL++ Sbjct 1071 QSVSLFYEN-------NHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPER 1123 Query 600 RTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKR 659 + + SA+ N+VP NR LPHALV Y++ + V+ L + H +L+VSE + P KR Sbjct 1124 KLQPFSAECNIVPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKR 1183 Query 660 IEWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 718 + WIAP ++GAD+ Y+L G P A RYDLVF+NI T+YR HH+QQC DH+ L+ L Sbjct 1184 VFWIAPPRVSGADRTYDLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGG 1243 Query 719 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 778 +L+ L PGG+L++++YGYADR SE VVTALARKF RP CV+SNTE++L+F D Sbjct 1244 DSLHLLRPGGSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFD 1303 Query 779 NSRTRQFTPHHLNCVISSVY 798 N R R T H N +SS+Y Sbjct 1304 NGR-RAVTLHQANQKLSSMY 1322 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1332 Score:976 bits(2524), Expect:0.0, Method:Compositional matrix adjust., Identities:473/810(58%), Positives:602/810(74%), Gaps:19/810(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 ++ETPRG +++ Q D ++G+Y+V+SP +VL++ KL+ H LA+QVK THSGR+GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVE YD +VL+P+G A+ +F +LSESAT+VYNEREFVNRKL+HIAMHGPA NT+EE Y Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 ++ +AE E EYV+DVD++RC KKEEA+GLVL G+LTNPPYHE A EGLK RPA PYK+ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R RG++I+++TVDS++LN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC++ V+VLYVDEAFACH+G LLALIA+VRPR+KVVLCGDP QCGFFNMMQ+KV++NH Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 833 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ ++K ISRRCT PVTAIVS+LHY+GKM+TTN K I +D TG+TKP PGD++L Sbjct 834 -NICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 892 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRT Sbjct 893 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E +LVWKTL GDPWIK N PKGNF+ATI++WE EH I+A I S + F K NV Sbjct 953 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANV 1012 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK+L PIL TAGI L QWS++ F +DK +S AL+ IC + +G+DL SGLFSK Sbjct 1013 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSK 1072 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 + + Y AD+ HWDN PG + +G++ A+ L R++P + GK Q+ + Sbjct 1073 PLVSVYY--ADN-----HWDNRPGGKMFGFNPEAASILERKYPFTK--GKWNINKQICVT 1123 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 T R + N++P NR LPH+LV E++ + ++ +N+ H VL+VS + P Sbjct 1124 TRRIEDFNPTTNIIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPT 1183 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 KR+ W+AP+G+ GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1184 KRVTWVAPLGVRGADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQML 1243 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 +L L PGG+L++++YGYADR SE V+ L RKF A +P CV+SNTEM+ +F Sbjct 1244 GGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSN 1303 Query 777 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 804 DN R R FT H +N +++ + G TR G Sbjct 1304 FDNGR-RNFTTHVMNNQLNAAFVGQATRAG 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1321 Score:974 bits(2519), Expect:0.0, Method:Compositional matrix adjust., Identities:470/802(59%), Positives:594/802(74%), Gaps:18/802(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPR +++ PQ D++IG Y+++SP +VLK+ KL P HPLA+QV I+THSGRSGRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 V+ YD +VL+P G A+P EF ALSESAT+VYNEREF+NRKL+HIA++GPA NT+EE Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 + +AE AE EYVFDVDK+ CVK+E+ASGLVL G+L NPP+HE A EGLK RPA P++ Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIKS VT RDLV SGKKENC+EI DV + RG+ +T++TVDS++LN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC + VE LYVDEAFACH+G LLALIA+V+P KV+LCGDP QCGFFN+MQLKV+FNH Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNH-- 831 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 DICT+ +K ISRRCT P+TAIVSTLHY GKM+TTN C I+ID TG TKP GDI+L Sbjct 832 -DICTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVL 890 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFR WVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLYA +SEHVNVLLTRT Sbjct 891 TCFRXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRT 950 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E+RLVWKTL GDPWIK TNIPKG+F AT+E+W+ EH I+ A+ + +PF K V Sbjct 951 ENRLVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKV 1010 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L +L TAGI +T +W + F +D+ +S AL+ IC K++G+DL SGLFS Sbjct 1011 CWAKCLVQVLETAGIRMTAEEWDTVL-AFREDRAYSPEVALNEICTKYYGVDLDSGLFSA 1069 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 QS+ L Y HWDN PG R YG++ +A + +R+P L GK G Q+++ Sbjct 1070 QSVSLYYEN-------NHWDNRPGGRMYGFNREVARKFEQRYPF--LRGKMDSGLQVNVP 1120 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 + + +A+ N++ +NR LPHALV Y++ + V+ L + + +L+VSE + P Sbjct 1121 ERKVQPFNAECNILLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPH 1180 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 KR+ WIAP ++GAD+ Y+L G P A RYDLVF+NI T+YR HH+QQC DH+ L+ L Sbjct 1181 KRVFWIAPPHVSGADRIYDLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQML 1240 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 +L+ L PGG+L++++YGYADR SE VVTALARKF RP CV+SNTE++L+F Sbjct 1241 GGDSLHLLXPGGSLLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTN 1300 Query 777 LDNSRTRQFTPHHLNCVISSVY 798 DN R R T H N +SS++ Sbjct 1301 FDNGR-RAVTLHQANQRLSSMF 1321 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1332 Score:968 bits(2503), Expect:0.0, Method:Compositional matrix adjust., Identities:469/810(58%), Positives:600/810(74%), Gaps:19/810(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 ++ETPRG +++ Q D ++G+Y+V+SP +VL++ KL+ H LA+QVK THSGR+GRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVE YD ++L+P+G A+ +F +LSESAT+VYNEREFVNRKL+HIA+HGPA NT+EE Y Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 ++ +AE E EYV+DVD++RC KKEEA+GLVL G+LTNPPYHE A EGL+ RPA PYK Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R R ++I+++TVDS++LN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC++ V+VLYVDEAFACH+G LLALIA+VRPR+KVVLCGDP QCGFFNMMQ+KV++NH Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 833 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ ++K ISRRCT PVTAIVS+LHY+GKM+TTN K I +D TG+TKP PGD++L Sbjct 834 -NICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVL 892 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY GHEVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRT Sbjct 893 TCFRGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E +LVWKTL GDPWIK N PKGNF+ATI++WE EH I+A I + + F K NV Sbjct 953 EGKLVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANV 1012 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK+L PIL TAGI L QWS++ F +D+ +S AL+ IC + +G+DL SGLFSK Sbjct 1013 CWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSK 1072 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 + + Y AD+ HWDN PG + +G++ A+ L R++P + GK Q+ + Sbjct 1073 PLVSVHY--ADN-----HWDNRPGGKMFGFNPEAASILERKYPFTK--GKWNTNKQICVT 1123 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 T R + N++P NR LPH+LV E++ + ++ +N+ H VL+VS + P Sbjct 1124 TRRIEDFNPNTNIIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPT 1183 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 KR+ W+AP+GI GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1184 KRVTWVAPLGIRGADYTYNLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQML 1243 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 +L L PGG+L++++YGYADR SE VV L RKF A +P CV+SNTEM+ +F Sbjct 1244 GGDSLRLLKPGGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSN 1303 Query 777 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 804 DN R R FT H +N +++ + G TR G Sbjct 1304 FDNGR-RNFTTHVMNNQLNAAFVGQATRAG 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1332 Score:967 bits(2500), Expect:0.0, Method:Compositional matrix adjust., Identities:466/810(58%), Positives:604/810(74%), Gaps:19/810(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPRG +++ Q +DR++G+Y+V++P +VL++ KL+ H LA+QVK THSGR+GRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVE YD +VL+P+G A+P +F +LSESAT+V+NEREFVNRKL+HIAMHGPA NT+EE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 ++ + E E EYV+DVD+K+C K+EEA+GLVL G+LT+PPYHE A EGLK RPA PYK Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R R ++I+++TVDS++LN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC+K VEVLYVDEAFACH+G LLALIA+VRPR+KVVLCGDP QCGFFNMMQ+KV++NH Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 833 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ ++K ISRRCT PVTAIVS+LHY+ KM+TTN + I +D TG TKP+PGD++L Sbjct 834 -NICTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVL 892 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY G+EVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRT Sbjct 893 TCFRGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E +L+WKTL GDPWIK N PKGNF+ATI++WEAEH I+A I + + F K NV Sbjct 953 EGKLIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANV 1012 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L PIL TAGI L+ QWS++ F +D+ +S AL+ IC + +G+DL SGLFSK Sbjct 1013 CWAKCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSK 1072 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 I + Y AD+ HWDN PG + +G++ +A L +++P + GK Q+ + Sbjct 1073 PLISVYY--ADN-----HWDNRPGGKMFGFNPEVALMLEKKYPFTK--GKWNINKQICIT 1123 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 T + + + N++P NR LPH+LV E+ + ++ +N+ H +L+VS + P Sbjct 1124 TRKVDEFNPETNIIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPT 1183 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 KR+ W+AP+G GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1184 KRVTWVAPLGTRGADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQML 1243 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 +L L PGG+L++++YGYADR SE V++ L RKF A +P C++SNTEM+ +F + Sbjct 1244 GGDSLRLLKPGGSLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSR 1303 Query 777 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 804 DN R R FT H +N +++VY G TR G Sbjct 1304 FDNGR-RNFTTHVMNNQLNAVYAGLATRAG 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1332 Score:964 bits(2492), Expect:0.0, Method:Compositional matrix adjust., Identities:465/810(57%), Positives:602/810(74%), Gaps:19/810(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPRG +++ Q +D ++G+Y+V++P +VL++ KL H LA+QVK THSGR+GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVE YD +VL+P+G A+P +F +LSESAT+V+NEREFVNRKL+HIAMHGPA NT+EE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 ++ + E E EYV+DVD+K+C K+EEA+GLVL G+LT+PPYHE A EGLK RPA PYK Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R R ++I+++TVDS++LN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC+K VEVLYVDEAFACH+G LLALIA+VRPR+KVVLCGDP QCGFFNMMQ+KV++NH Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 833 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ ++K ISRRCT PVTAIVS+LHY+ KM+TTN + I +D TG TKP+PGD++L Sbjct 834 -NICTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVL 892 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY G+EVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRT Sbjct 893 TCFRGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRT 952 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E +L+WKTL GDPWIK N PKGNF+ATI++WEAEH I+A I + + F K NV Sbjct 953 EGKLIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANV 1012 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L PIL TAGI L+ QWS++ F +D+ +S AL+ IC + +G+DL SGLFSK Sbjct 1013 CWAKCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSK 1072 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 I + Y AD+ HWDN PG + +G++ +A L +++P + GK Q+ + Sbjct 1073 PLISVYY--ADN-----HWDNRPGGKMFGFNPEVALMLEKKYPFTK--GKWNINKQICIT 1123 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 T + + + N++P NR LPH+LV E+ + ++ +N+ H +L+VS + P Sbjct 1124 TRKVDEFNPETNIIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPT 1183 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 KR+ W+AP+G GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1184 KRVTWVAPLGTRGADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQML 1243 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 +L L PGG+L++++YGYADR SE V++ L RKF A +P C++SNTEM+ +F + Sbjct 1244 GGDSLRLLKPGGSLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSR 1303 Query 777 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 804 DN R R FT H +N +++VY G TR G Sbjct 1304 FDNGR-RNFTTHVMNNQLNAVYAGLATRAG 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1332 Score:961 bits(2485), Expect:0.0, Method:Compositional matrix adjust., Identities:464/810(57%), Positives:602/810(74%), Gaps:19/810(2%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPRG +++ Q +D ++G+Y+V++P +VL++ KL+ H LA+QVK THSGR+GRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AVE YD +VL+P+G A+P +F +LSESAT+V+NEREFVNRKL+HIAMHGPA NT+EE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 ++ + E E EYV+DVD+K+C K+EEA+GLVL G+LT+PPYHE A EGLK RPA PYK Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 IGV G PGSGKSAIIK+ VT +DLVTSGKKENC+EI DV+R R ++I+++TVDS++LN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 GC+K VEVLYVDEAFACH+G LLALIA+VRPR+KVVLCGDP QCGFFNMMQ+KV++NH Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNH-- 833 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ ++K ISRRCT PVTAIVS+LHY+ KM+TTN + I +D TG TKP+PGD++L Sbjct 834 -NICTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVL 892 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQIDY G+EVMTAAASQGLTRKGVYAVRQKVNENPLYA TSEHVNVLLTRT Sbjct 893 TCFRGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRT 952 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E +L WKTL GDPWIK N PKG+F+ATI++WEAEH I+A I + + F K NV Sbjct 953 EGKLTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANV 1012 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L PIL TAGI L+ QWS++ F +D+ +S AL+ IC + +G+DL SGLFSK Sbjct 1013 CWAKCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSK 1072 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK---GTQLDLQ 597 I + Y AD+ HWDN PG + +G++ +A L +++P + GK Q+ + Sbjct 1073 PLISVYY--ADN-----HWDNRPGGKMFGFNPEVALMLEKKYPFTK--GKWNINKQICIT 1123 Query 598 TGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPR 657 T + + + N++P NR LPH+LV E+ + ++ +N+ H +L+VS + P Sbjct 1124 TRKVDEFNPETNIIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPT 1183 Query 658 KRIEWIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTL 716 KR+ W+AP+G GAD YNL G P RYDLV INI T +R HH+QQC DHA L+ L Sbjct 1184 KRVTWVAPLGTRGADYTYNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQML 1243 Query 717 SRSALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQ 776 +L L PGG+L++++YGYADR SE V++ L RKF A +P C++SNTEM+ +F + Sbjct 1244 GGDSLRLLKPGGSLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSR 1303 Query 777 LDNSRTRQFTPHHLNCVISSVYEG--TRDG 804 DN R R FT H +N +++VY G TR G Sbjct 1304 FDNGR-RNFTTHVMNNQLNAVYAGLATRAG 1332 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1327 Score:960 bits(2482), Expect:0.0, Method:Compositional matrix adjust., Identities:469/802(58%), Positives:573/802(71%), Gaps:12/802(1%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPR +++ PQ D M+G Y+V+SP +VLK+ KL HPLA+ VKIITH GR+GRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 V+ YD +VL+P G A+P P+F ALSESAT+VYNEREF+NRKLYHIA+HG A NT+EE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 + +AE + EYV+DVD+K+CVK+EEA GLV+ G+L NPP+HE A EGLK RPA PYK Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 +GV G PGSGKS IIKS VT DLV SGKKENC+EI DV R R + +T+KTVDSV+LN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 G + V+VLYVDEAFACHAG LLALIA VRPRKKVVLCGDP QCGFFN+MQL+V+FNH Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNH-- 834 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +ICT+ +K ISRRCT P+TAIVSTLHY+G+M+TTNP K + ID TG TKP DI+L Sbjct 835 -NICTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVL 893 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQ+DY GHEVMTAAASQGLTRKGVYAVR KVNENPLYA +SEHVNVLLTRT Sbjct 894 TCFRGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRT 953 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E RLVWKTL GDPWIK +NIPKGNF AT+EDW+ EH I+ AI + F K V Sbjct 954 EGRLVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKV 1013 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L P+L TAGI L+ WS + F +D+ +S AL+ IC K +G+DL SGLFS Sbjct 1014 CWAKCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSA 1073 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGKGTQLDLQTGR 600 + L Y HWDNSPG R YG+ A L ++ P ++ Q+ + + Sbjct 1074 PRVSLHY-------TTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASGQVLVAERK 1126 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 T+ I NL+P NR LPH LV EY + V+ +N+ + VL+VSE + PR+++ Sbjct 1127 TQPIDVTCNLIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKV 1186 Query 661 EWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRS 719 WIAP + GAD Y+L G PP A RYDLVF+N+ T YR HH+QQC DHA L+ L Sbjct 1187 TWIAPPTVTGADLTYDLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGD 1246 Query 720 ALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDN 779 AL L PGG+L++ +Y YADR SE VVTALAR+F A CV+SNTE++L+F DN Sbjct 1247 ALYLLKPGGSLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDN 1306 Query 780 SRTRQFTPHHLNCVISSVYEGT 801 R R T H N +SS+Y GT Sbjct 1307 GR-RTVTLHQTNGKLSSIYAGT 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1325 Score:929 bits(2400), Expect:0.0, Method:Compositional matrix adjust., Identities:456/803(57%), Positives:575/803(71%), Gaps:13/803(1%) Query 1 ALVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRY 60 +VETPR +++ Q D +IG Y+++SP +VL++ KLA H LA+QVK++THSGRSGRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 AV+ Y +VL+P G A+ F ALSESATLVYNEREFVNRKL+HIA++G A NT+EE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 + E AE++YVFDVD+K C+KKE+ASG VL GEL NPP+HE A EGL+TRP+ PYKV Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 T+GV G PGSGKSAIIK+TVT DLV SGKKENC EI DVL+ R ++IT+KTVDSV+LN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 G +LY+DEAF+CHAG LLA IAIVRP++KVVLCGDP QCGFFNMMQLKV++NH Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNH-- 831 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 DIC++ F+K ISRRCTQ +TAIVS LHY +M+TTNP K +I ID TG TKP D+IL Sbjct 832 -DICSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLIL 890 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVKQLQ DY G+EVMTAAASQGLTR VYAVR KVNENPLYA TSEHVNVLLTRT Sbjct 891 TCFRGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRT 950 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNV 480 E++LVWKTL DPWIK TN P+G++ ATI +WEAEH+GI+ AI P N F K NV Sbjct 951 ENKLVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNV 1010 Query 481 CWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSK 540 CWAK L P+L TAGI L+ WSEL P FA D +S AL++IC K +G DL +GLFS+ Sbjct 1011 CWAKTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSR 1070 Query 541 QSIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLAGK-GTQLDLQTG 599 S+P+TY HWDN G + YG+ +L+RR P + K G Q+ + Sbjct 1071 PSVPMTYTK-------DHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSGMQIVVTEM 1123 Query 600 RTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKR 659 R + + N++P+NR LPH+LV ++ ++ ++F + +++L+VSE + P K+ Sbjct 1124 RIQRPRSDANIIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKK 1183 Query 660 IEWIAPIGIAGADKNYNLAFGFPP-QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 718 I W+APIG GA NL G PP +D V +N+ T +RNHH+QQCEDHA L+ L+ Sbjct 1184 ITWLAPIGTQGAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAG 1243 Query 719 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 778 AL + PGG+L VK+YGYADR+SE VV ALARKF +P CV+SNTE++L F D Sbjct 1244 DALRHIKPGGSLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFD 1303 Query 779 NSRTRQFTPHHLNCVISSVYEGT 801 N + R H N +S+++ T Sbjct 1304 NGK-RAIALHSANRKANSIFQNT 1325 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 538 to 1323 Score:889 bits(2298), Expect:0.0, Method:Compositional matrix adjust., Identities:447/804(56%), Positives:560/804(69%), Gaps:22/804(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPRG +++ A + IG Y V+SP +VL++ KL HPLA+QV +ITHSGR GRYAV Sbjct 538 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 597 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE Y+V Sbjct 598 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 657 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K E EY++D+DKK+CVKKE SGL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 658 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP IEID TG+TKPK D+ILTC Sbjct 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTC 893 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 482 ++VWKTL GDPWIK T G+F AT+E+W+AEH I+ I + F K NVCW Sbjct 954 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 1013 Query 483 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 542 AKAL P+L TAGI LT QW+ + F +DK HSA L+ +C++FFG+DL SGLFS + Sbjct 1014 AKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPT 1072 Query 543 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGRT 601 +PL+ HWDNSP YG + + +LSRR+P A G D+ TG Sbjct 1073 VPLSIRN-------NHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTL 1125 Query 602 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 661 R + NLVPVNR LPHALV ++ + P F+++ K +VLVV EK+ K ++ Sbjct 1126 RNYDPRINLVPVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVG-EKMSISGKTVD 1184 Query 662 WIAPIGIAGADKNY--NLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 718 W++ D + L G P + +YD+VF+N+ T+YR HH+QQCEDHA L L++ Sbjct 1185 WLSET----PDSTFRARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTK 1240 Query 719 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 778 A LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1241 KACLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFD 1300 Query 779 NSRTRQFTPHHLNCVISSVYEGTR 802 +TR P+ L+ ++++Y G+R Sbjct 1301 R-KTRTHNPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 538 to 1323 Score:883 bits(2282), Expect:0.0, Method:Compositional matrix adjust., Identities:450/803(56%), Positives:557/803(69%), Gaps:20/803(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPRG +++ A + IG Y V+SP +VLK+ KL+ HPLA+QV +ITHSGR GRYAV Sbjct 538 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRYAV 597 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE YK Sbjct 598 EPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKT 657 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K + EY++D+D+K+CVKKE +GL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 658 VKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV R++G+ + ++TVDSV+LNGC Sbjct 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLNGC 777 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 778 KYPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP + IEID TG+TKPK D+ILTC Sbjct 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTC 893 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY G+EVMTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 894 FRGWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAI-NSPTPRANPFSCKTNVC 481 R+VWKTL GDPWIK T GNF ATIE+W+AEH I+ I P P + F K NVC Sbjct 954 RIVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDP-TDVFQNKANVC 1012 Query 482 WAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQ 541 WAKAL P+L TAGI +T QW+ + F DK HSA L+ +C++FFG+DL SGLFS Sbjct 1013 WAKALVPVLKTAGIDMTTEQWNTV-DYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAP 1071 Query 542 SIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGR 600 ++PL+ HWDNSP YG + + +LSRR+P A G D+ TG Sbjct 1072 TVPLSIRN-------NHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGT 1124 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 R + NLVPVNR LPHALV + E F+++ K +VLVV EK+ P K + Sbjct 1125 LRNYDPRINLVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVG-EKLSVPGKTV 1183 Query 661 EWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRS 719 +W++ A L G P +YD++FIN+ T Y+ HH+QQCEDHA L L++ Sbjct 1184 DWLS--DRPEATFRARLDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKK 1241 Query 720 ALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDN 779 A LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1242 ACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDR 1301 Query 780 SRTRQFTPHHLNCVISSVYEGTR 802 + R P+ L+ ++++Y G+R Sbjct 1302 -KARTHNPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 538 to 1323 Score:882 bits(2278), Expect:0.0, Method:Compositional matrix adjust., Identities:448/803(56%), Positives:557/803(69%), Gaps:20/803(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPRG +++ A + IG Y V+SP +VLK+ KL+ HPLA+QV +ITHSGR GRYAV Sbjct 538 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRYAV 597 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE YK Sbjct 598 EPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKT 657 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K + EY++D+D+K+CVKKE +GL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 658 VKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP + I ID TG+TKPK D+ILTC Sbjct 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTC 893 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAI-NSPTPRANPFSCKTNVC 481 R+VWKTL GDPWIK T GNF ATIE+W+AEH I+ I P P + F K NVC Sbjct 954 RIVWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDP-TDVFQNKANVC 1012 Query 482 WAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQ 541 WAKAL P+L TAGI +T QW+ + F DK HSA L+ +C++FFG+DL SGLFS Sbjct 1013 WAKALVPVLKTAGIDMTTEQWNTV-DYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAP 1071 Query 542 SIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGR 600 ++PL+ HWDNSP YG + + +LSRR+P A G D+ TG Sbjct 1072 TVPLSIRN-------NHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGT 1124 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 R + NLVPVNR LPHALV + E F+++ K +VLVV EK+ P K++ Sbjct 1125 LRNYDPRINLVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVG-EKLSVPGKKV 1183 Query 661 EWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRS 719 +W++ A L G P +YD+VFIN+ T Y+ HH+QQCEDHA L L++ Sbjct 1184 DWLS--DQPEATFRARLDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKK 1241 Query 720 ALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDN 779 A LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1242 ACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDR 1301 Query 780 SRTRQFTPHHLNCVISSVYEGTR 802 + R P+ L+ ++++Y G+R Sbjct 1302 -KARTHNPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 538 to 1322 Score:881 bits(2276), Expect:0.0, Method:Compositional matrix adjust., Identities:443/801(55%), Positives:556/801(69%), Gaps:18/801(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPRG +++ + IG Y V+SP +VL++ KL HPLA+QV +ITHSGR GRYAV Sbjct 538 VETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRYAV 597 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE Y+V Sbjct 598 EPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYRV 657 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K E EY++D+DKK+CVKKE SGL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 658 VKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ F+K ISRRCT+ VT++VSTL YD +M+TTNP IEID TG+TK K D+ILTC Sbjct 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTC 893 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY G+E+MTAAASQGLTRK VYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 482 ++VWKTL GDPWIK T G+F AT+E+W+AEH I+ I + F K NVCW Sbjct 954 KIVWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCW 1013 Query 483 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 542 AKAL P+L TAGI LT QW+ + F +DK HSA L+ +C+++FG+DL SGLFS + Sbjct 1014 AKALVPVLKTAGIDLTTEQWNTV-DYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPT 1072 Query 543 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGRT 601 +PL+ HWDNSP YG +H + +LSRR+P A G D+ TG Sbjct 1073 VPLSIRN-------NHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTL 1125 Query 602 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 661 R + NLVPVNR LPHALV ++ + P F+++ K +VLVV EK+ K ++ Sbjct 1126 RNYDPRINLVPVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVG-EKMNISGKAVD 1184 Query 662 WIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 720 W++ A L G P + +YD+VF+N+ T+YR HH+QQCEDHA L L++ A Sbjct 1185 WLSE--TPDATFRARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKA 1242 Query 721 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 780 LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1243 CLHLNPGGTCVSIGYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDR- 1301 Query 781 RTRQFTPHHLNCVISSVYEGT 801 +TR P+ L+ ++++Y G+ Sbjct 1302 KTRTHNPYKLSSTLTNIYTGS 1322 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 538 to 1323 Score:880 bits(2274), Expect:0.0, Method:Compositional matrix adjust., Identities:447/803(56%), Positives:556/803(69%), Gaps:20/803(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPRG +++ A + IG Y V+SP +VLK+ KL+ HPLA+QV +ITHSGR GRYAV Sbjct 538 VETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRYAV 597 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY KV++P G A+P +F ALSESAT+VYNEREFVNR L+HIA HG A NT+EE YK Sbjct 598 EPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYYKT 657 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K + EY++D+D+K+CVKKE +GL L+GEL +PP+HE A E L+TRPA PY+V TI Sbjct 658 VKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVPTI 717 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV +++G+ + ++TVDSV+LNGC Sbjct 718 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLNGC 777 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 VE LY+DEAFACHAG L ALIAI+RP KK VLCGDP QCGFFNMM LKVHFNH + Sbjct 778 KHPVETLYIDEAFACHAGTLRALIAIIRP-KKAVLCGDPKQCGFFNMMCLKVHFNH---E 833 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ F+K ISRRCT+ VT++VSTL YD KM+TTNP + I ID TG+TKPK D+ILTC Sbjct 834 ICTQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTC 893 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY G+E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTED Sbjct 894 FRGWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTED 953 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAI-NSPTPRANPFSCKTNVC 481 R+VWKTL GDPWIK T GNF ATIE+W+AEH I+ I P P + F K NVC Sbjct 954 RIVWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDP-TDVFQNKANVC 1012 Query 482 WAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQ 541 WAKAL P+L TAGI +T QW+ + F DK HSA L+ +C++FFG+DL SGLFS Sbjct 1013 WAKALVPVLKTAGIDMTTEQWNTV-DYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAP 1071 Query 542 SIPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFPVFQLA-GKGTQLDLQTGR 600 ++PL+ HWDNSP YG + + +LSRR+P A G D+ TG Sbjct 1072 TVPLSIRN-------NHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGT 1124 Query 601 TRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRI 660 R + NLVPVNR LPHALV + E F+++ K +VLVV EK+ P K + Sbjct 1125 LRNYDPRINLVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVG-EKLSVPGKMV 1183 Query 661 EWIAPIGIAGADKNYNLAFGFPPQA-RYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRS 719 +W++ A L G P +YD++F+N+ T Y+ HH+QQCEDHA L L++ Sbjct 1184 DWLS--DRPEATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKK 1241 Query 720 ALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDN 779 A LNPGGT V YGYADR SE ++ A+AR+F +P TE+ +F D Sbjct 1242 ACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDR 1301 Query 780 SRTRQFTPHHLNCVISSVYEGTR 802 + R P+ L+ ++++Y G+R Sbjct 1302 -KARTHNPYKLSSTLTNIYTGSR 1323 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 536 to 1320 Score:875 bits(2262), Expect:0.0, Method:Compositional matrix adjust., Identities:440/803(55%), Positives:556/803(69%), Gaps:22/803(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPR H+++ + MIG Y V+SP +VL + KLA HPLA+QV ++TH GR+GRY V Sbjct 536 VETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 595 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY +V++P+G A+P P+F ALSESAT+VYNEREFVNR L+HIA++G A NT+EE YKV Sbjct 596 EPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYYKV 655 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 ++ AE+EYVFD+D K+CVKK EA + L G+L +PP+HE A E LKTRPA P+KV TI Sbjct 656 LRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVPTI 715 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT RDLV S KKENC EI DV R+RGM + ++TVDSV+LNG Sbjct 716 GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLNGV 775 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 V+ LY+DEAFACHAG LLALIAIV+P KKVVLCGDP QCGFFNMM LKVHFNH + Sbjct 776 KHPVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---E 831 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ ++K ISRRCT+ VTAIVSTL YD +M+T NPC I ID T TKP DIILTC Sbjct 832 ICTEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTC 891 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE Sbjct 892 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEK 951 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 482 R+VWKTL GDPWIK T G F AT+E+W+AEH I+ + ++ + K +VCW Sbjct 952 RIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCW 1011 Query 483 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 542 AKALEP+LATA I LT QW E P F DDK S AL+ +C +FFG+D+ SGLFS + Sbjct 1012 AKALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPT 1070 Query 543 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFP-VFQLAGKGTQLDLQTGRT 601 +PLTY HWDNSPG +YG A EL+RR+P + + G D++T Sbjct 1071 VPLTYTN-------EHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTI 1123 Query 602 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 661 R + N+VP+NR LPH+LV ++ G + L++ ++LV+ I P KR+E Sbjct 1124 RDYNPMINVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVIG-TPINVPGKRVE 1182 Query 662 WIAPIGIAGADKNY--NLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 718 + P G Y +L G P +YD++F+N+ T Y++HH+QQCEDHA L+R Sbjct 1183 TLGP----GPQCTYKADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTR 1238 Query 719 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 778 A++ LN GGT V YG ADR +E++++A+AR F +P C NTE+ +F D Sbjct 1239 KAVDHLNKGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKD 1298 Query 779 NSRTRQFTPHHLNCVISSVYEGT 801 N + L+ V++++Y+G+ Sbjct 1299 NGNHLR-DQDQLSVVLNNIYQGS 1320 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 536 to 1320 Score:872 bits(2253), Expect:0.0, Method:Compositional matrix adjust., Identities:441/801(55%), Positives:552/801(68%), Gaps:18/801(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPR H+++ + MIG Y V+SP +VL + KLA HPLA+QV ++TH GR+GRY V Sbjct 536 VETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 595 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY +V++P+G A+P +F ALSESAT+V+NEREFVNR L+HIA++G A NT+EE YKV Sbjct 596 EPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYYKV 655 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K+ ++EYVFD+D K+CVKK +A + L GEL +PP+HE A E LKTRPA P+KV TI Sbjct 656 VKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPTI 715 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT RDLV S KKENC EI DV R+RGM I ++TVDSV+LNG Sbjct 716 GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLNGV 775 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 +V+ LY+DEAFACHAG LLALIAIV+P KKVVLCGDP QCGFFNMM LKVHFNH + Sbjct 776 KHSVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---E 831 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ ++K ISRRCT+ VT+IVSTL YD +M+T NPC I ID T TKP DIILTC Sbjct 832 ICTEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTC 891 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE Sbjct 892 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEK 951 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 482 R+VWKTL GDPWIK T GNF AT+E+W+AEH I+A I ++ F K NVCW Sbjct 952 RIVWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCW 1011 Query 483 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 542 AKALEP+LATA I LT QW E P F DDK +S AL+ C +FFG+D+ SGLFS + Sbjct 1012 AKALEPVLATANITLTRSQW-ETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPT 1070 Query 543 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFP-VFQLAGKGTQLDLQTGRT 601 +PLTY HWDNSPG YG A EL+RR+P + + G D++T Sbjct 1071 VPLTYTN-------EHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTI 1123 Query 602 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 661 + + N+VP+NR LPH+LV ++ G + + + +VLVV + P KR+E Sbjct 1124 KDYNPLINVVPLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVVG-TPMNIPGKRVE 1182 Query 662 WIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 720 + P L G P +YD++FIN+ T YR+HH+QQCEDHA L+R A Sbjct 1183 TLGP--SPQCTYKAELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKA 1240 Query 721 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 780 ++ LN GGT + YG ADR +E++++A+AR F +P C NTE+ +F DN Sbjct 1241 VDHLNKGGTCIALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNG 1300 Query 781 RTRQFTPHHLNCVISSVYEGT 801 Q L+ V++++Y+G+ Sbjct 1301 NHLQ-DQDRLSVVLNNIYQGS 1320 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 536 to 1320 Score:872 bits(2252), Expect:0.0, Method:Compositional matrix adjust., Identities:440/803(55%), Positives:556/803(69%), Gaps:22/803(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPR H+++ + IG Y V+SP +VL + KLA HPLA+QV ++TH GR+GRY V Sbjct 536 VETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 595 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY +V++P+G A+P P+F ALSESAT+VYNEREFVNR L+HIA++G A NT+EE YKV Sbjct 596 EPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYYKV 655 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 ++ A++EYVFD+D ++CVKK +A + L GEL +PP+HE A E LKTRPA P+KV TI Sbjct 656 LRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPTI 715 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT RDLV S KKENC EI DV R+RGM I ++TVDSV+LNG Sbjct 716 GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLNGV 775 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 V+ LY+DEAFACHAG LLALIAIV+P KKVVLCGDP QCGFFNMM LKVHFNH + Sbjct 776 KHPVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---E 831 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ ++K ISRRCT+ VTAIVSTL YD +M+T NPC I ID T TKP+ DIILTC Sbjct 832 ICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTC 891 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE Sbjct 892 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEK 951 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 482 R+VWKTL GDPWIK T G F AT+E+W+AEH I+ I ++ + K +VCW Sbjct 952 RIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCW 1011 Query 483 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 542 AKALEP+LATA I LT QW E P F DDK S AL+ +C +FFG+D+ SGLFS + Sbjct 1012 AKALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPT 1070 Query 543 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFP-VFQLAGKGTQLDLQTGRT 601 +PLTY HWDNSPG +YG A EL+RR+P + + G D++T Sbjct 1071 VPLTYTN-------EHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTI 1123 Query 602 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 661 + S N+VP+NR LPH+LV ++ G + L++ +VLV+ I P KR+E Sbjct 1124 KDYSPLINVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIG-TPISVPGKRVE 1182 Query 662 WIAPIGIAGADKNY--NLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 718 + P G Y +L G P +YD++F+N+ T Y++HH+QQCEDHA L+R Sbjct 1183 TLGP----GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTR 1238 Query 719 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 778 A++ LN GGT V YG ADR +E++++A+AR F +P C NTE+ +F D Sbjct 1239 KAVDHLNKGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKD 1298 Query 779 NSRTRQFTPHHLNCVISSVYEGT 801 N + L+ V++++Y+G+ Sbjct 1299 NGNHLR-DQDQLSIVLNNIYQGS 1320 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 536 to 1320 Score:854 bits(2207), Expect:0.0, Method:Compositional matrix adjust., Identities:439/801(55%), Positives:551/801(68%), Gaps:18/801(2%) Query 3 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 62 VETPRGH+R+ + IG Y ++SP +VL + KLA HPLA+QV ++TH GR+GRY V Sbjct 536 VETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 595 Query 63 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 122 EPY KV++P G AVP +F ALSESAT+V+NEREFVNR L+HIA++G A NT+EE YK Sbjct 596 EPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYYKT 655 Query 123 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 182 K + ++EYVFD+D ++CVK+E+A L L+G+L +PP+HE A E LKTRPA P+KV TI Sbjct 656 VKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVPTI 715 Query 183 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV R+R M + ++TVDSV+LNG Sbjct 716 GVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLNGV 775 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 302 V LY+DEAFACHAG LLALIAIV+P KKVVLCGDP QCGFFNMM LKVHFNH D Sbjct 776 KHPVNTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---D 831 Query 303 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 362 ICT+ ++K ISRRCTQ VTAIVSTL YD +MKT NPC I ID TG TKP D+ILTC Sbjct 832 ICTEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTC 891 Query 363 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 422 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNENPLY+ TSEHVNVLLTRTE Sbjct 892 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEK 951 Query 423 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 482 R+VWKTL GDPWIK T G+F A+++DW+ EH I+A + A+ F K NVCW Sbjct 952 RIVWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCW 1011 Query 483 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 542 AKALEP+LATA IVLT QW L P F D+ +S AL+ C +FFG+DL SGLFS + Sbjct 1012 AKALEPVLATANIVLTRQQWETLHP-FKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPT 1070 Query 543 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFP-VFQLAGKGTQLDLQTGRT 601 + LTY HWDNSPG YG + +A ELSRR+P + + G D++ Sbjct 1071 VALTYRD-------QHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTI 1123 Query 602 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 661 + S N+VP+NR LPH+L+ ++K + FL++ K SVLV+ + I P K++E Sbjct 1124 KDYSPTINVVPLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIG-DPISIPGKKVE 1182 Query 662 WIAPIGIAGADKNYNLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSA 720 + P+ +L G P +YD++F+N+ T YRNHH+QQCEDHA L+ A Sbjct 1183 SMGPLPTNTI--RCDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKA 1240 Query 721 LNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLDNS 780 ++ LN GGT V YG ADR +E+++TA+AR F +P + NTE+ +F DN Sbjct 1241 VHHLNTGGTCVAIGYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNG 1300 Query 781 RTRQFTPHHLNCVISSVYEGT 801 L V+ ++Y+G+ Sbjct 1301 -NHTHDQDRLGVVLDNIYQGS 1320 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 566 to 1393 Score:630 bits(1626), Expect:0.0, Method:Compositional matrix adjust., Identities:356/840(42%), Positives:488/840(58%), Gaps:52/840(6%) Query 2 LVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPA-HPLADQVKIITHSGRSGRY 60 +++ RG V++I D M+G+Y+V+SP +VL+ KLA PLA++V H GR+GRY Sbjct 566 IIDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRY 625 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 A+E + KVL+P G ++ F AL+ESATL YN+ F R L +A G A+NT+E Y Sbjct 626 AIEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYY 685 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 K+ A A EYV+++ K+CVKKE+A+G VL G++ NPPYH+ A E L+ RPA + V Sbjct 686 KLVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVH 745 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 TIG+ G PG+GK+AII + VT RDLV SGKKENC +I+ VL RG++I ++TVDS+ Sbjct 746 TIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYG 805 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 AV LYVDEA+ACH+G LLALIA VRP KVVLCGDP Q G N +Q+++H+NH Sbjct 806 AYRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNH-- 863 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +I + K ISRRCT +TAIVS L+Y+G+MKTTNPCKK + ID TG+TKP ++L Sbjct 864 -EISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 922 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVK L+ YP +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 923 TCFRGWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRT 982 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSP-TPRANPFSCKTN 479 D LVWKTL DP I + PKG++ AT+EDWE EH GI+AA+ PR N K N Sbjct 983 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 1042 Query 480 VCWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFS 539 CWA +L AG+ +T ++ +FP F +DKPHSA+ ALD + +G+D +SG+ S Sbjct 1043 TCWAVTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILS 1102 Query 540 KQSIPLTYHPADSARPVAHWDNSPGTRKYG--YDHAIAAELS--RRFPVFQLAGKGTQLD 595 + + +HW NS +YG D E++ R + D Sbjct 1103 GKGSFMRLEN-------SHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYD 1155 Query 596 LQTGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKH---HSVLVVSEEK 652 ++TG+ + VP+NR +PH LV +PG ++ L + HS + K Sbjct 1156 IETGKLVPLDPARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVK 1215 Query 653 IEAPRKRIEW--IAPIGIA-GADKNYNLAFG---------FPPQAR-------------- 686 KR+ + + +G A G +Y + G + + R Sbjct 1216 FAELTKRVSYNSVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADINGPLN 1275 Query 687 ----YDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNS 742 +DLVF + R HH+ QCEDHA + + + GG +VK+YG ADR + Sbjct 1276 NLGIFDLVFCDAAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRT 1335 Query 743 EDVVTALARKFVRVSAARPDCVSSN-TEMYLIFRQLDNSRTRQFTPHHLNCVISSVYEGT 801 E V AR F VS +P VSS T + + F+ R + HL ++ +Y T Sbjct 1336 ERAVEGTARYFRSVSVEKP--VSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYART 1393 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 565 to 1393 Score:623 bits(1607), Expect:0.0, Method:Compositional matrix adjust., Identities:358/841(43%), Positives:494/841(58%), Gaps:52/841(6%) Query 2 LVETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPA-HPLADQVKIITHSGRSGRY 60 +++ RG V++I D +G+Y+V+SP +VL+ KLA PLA++V H GR+GRY Sbjct 565 IIDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRY 624 Query 61 AVEPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQY 120 A+E + KVL+P G ++ F AL+ESATL YN+ F R L +A G AKNT+E Y Sbjct 625 AIEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYY 684 Query 121 KVTKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVE 180 K+ A A+ EYV+++ K+CVKKE+A+G VL G++ NPPYH+ A E L+ RPA + V Sbjct 685 KLVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVH 744 Query 181 TIGVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN 240 TIG+ G PG+GK+AII + VT RDLV SGKKENC +I+ VL RG++I ++TVDS++ Sbjct 745 TIGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYG 804 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPE 300 AV+ LYVDEA+ACH+G LLALIA VRP KVVLCGDP Q G N +Q+++H+NH Sbjct 805 AYRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNH-- 862 Query 301 KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIIL 360 +I + K ISRRCT +TAIVS L+Y+G+MKTTNPCKK + ID TG+TKP ++L Sbjct 863 -EISDRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVL 921 Query 361 TCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRT 420 TCFRGWVK L+I YP +E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT Sbjct 922 TCFRGWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRT 981 Query 421 EDRLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSP-TPRANPFSCKTN 479 D LVWKTL DP I + PKG++ AT+EDWE EH GI+AA+ PR N K N Sbjct 982 NDELVWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRN 1041 Query 480 VCWAKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFS 539 CWA +L AG+++T ++ +FP F +DKPHSA+ ALD + +G+D +SG+ S Sbjct 1042 TCWAVTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILS 1101 Query 540 KQSIPLTYHPADSARPVAHWDNSPGTRKYG--YDHAIAAELS--RRFPVFQLAGKGTQLD 595 + + +HW NS +YG D E++ R + D Sbjct 1102 GKGSFMRLEN-------SHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYD 1154 Query 596 LQTGRTRVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKH---HSVLVVSEEK 652 ++TG+ + VP+NR +PH LV +PG ++ L+ + HS + K Sbjct 1155 IETGKLVPMDPGRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVK 1214 Query 653 IEAPRKRIEW--IAPIGIA-GADKNYNLAFG---------FPPQAR-------------- 686 KR+ + + +G A G +Y + G + + R Sbjct 1215 FAELTKRVSYNSVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLN 1274 Query 687 ----YDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGYADRNS 742 +DLVF + R HH+ QCEDHA + + + GG +VK+YG ADR + Sbjct 1275 NLGIFDLVFCDAAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRT 1334 Query 743 EDVVTALARKFVRVSAARPDCVSSN-TEMYLIFRQLDNSRTRQFTPHHLNCVISSVYEGT 801 E V AR F VS +P VSS T + + F+ R + HL ++ +Y T Sbjct 1335 ERAVECTARYFKSVSVEKP--VSSRITNVEVFFKFSGRCRPHARSIAHLGPQLTDIYART 1392 Query 802 R 802 R Sbjct 1393 R 1393 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 806 to 1096 Score:74.3 bits(181), Expect:3e-12, Method:Compositional matrix adjust., Identities:82/297(28%), Positives:129/297(43%), Gaps:25/297(8%) Query 166 LEGLKTRPAVPYKVETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLR- 223 L LK VP + V G PG GK+ I TV DL+ KE C+ I + Sbjct 806 LSCLKDGEPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKS 865 Query 224 --LRGMQITSKTVDSVMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDP 281 +R + +TVDS +++ K L++DE H G + LIA+ R+ +V GD Sbjct 866 GHVRATKDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVF-GDT 924 Query 282 MQCGFFNMMQLKVHFNHPEKDICTKTF----YKYISRRCTQPVTAIVSTLHYDGKMKTTN 337 Q F N + +F +P K T + + +S RC VT +++ YDGK+ TN Sbjct 925 EQIPFINRV---ANFPYP-KHFATLVYDHREVRRLSLRCPADVTHFMNS-KYDGKVLCTN 979 Query 338 PCKKNIEIDITGA-------TKPKPGDIILTCFRGWVKQLQIDYPG----HEVMTAAASQ 386 ++++ ++ +KP G II + + Y E+ T Q Sbjct 980 DVIRSVDAEVVRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQ 1039 Query 387 GLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 G T + V VR L + +S HV V LTR + ++ DP +K +++ K Sbjct 1040 GETFEDVSVVRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVCSDLSK 1096 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 824 to 1096 Score:72.0 bits(175), Expect:2e-11, Method:Compositional matrix adjust., Identities:75/278(27%), Positives:124/278(44%), Gaps:23/278(8%) Query 184 VIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLR---LRGMQITSKTVDSVML 239 V G PG GK+ I TV DL+ KE C+ I + +R + +TVDS ++ Sbjct 824 VDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATRDNVRTVDSFLM 883 Query 240 NGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHP 299 + K L++DE H G + L+A+ R+ +V GD Q F N + +F +P Sbjct 884 HLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVF-GDAEQIPFINRV---ANFPYP 939 Query 300 EKDICTKTFYKYISR---RCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGA------ 350 + T +++ + R RC VT +++ YDGK+ TN ++++ ++ Sbjct 940 KHFRYTCLYHREVRRLSLRCPADVTHFMNS-KYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998 Query 351 -TKPKPGDIILTCFRGWVKQLQIDYPG----HEVMTAAASQGLTRKGVYAVRQKVNENPL 405 +KP G II + + Y E+ T QG T + V VR L Sbjct 999 KSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058 Query 406 YAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 + +S HV V LTR + ++ DP +K +++ K Sbjct 1059 ISKSSPHVLVALTRHTKSFKYYSVVLDPLVKVWSDLSK 1096 >RecName: Full=Replicase large subunit; AltName: Full=186 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=129 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Cucumber green mottle mosaic virus (watermelon strain SH)] Sequence ID: P69514.1 Length: 1648 Range 1: 842 to 1117 Score:71.6 bits(174), Expect:2e-11, Method:Compositional matrix adjust., Identities:82/283(29%), Positives:126/283(44%), Gaps:22/283(7%) Query 165 ALEGLKTRPAVPYKVETIGVIGTPGSGKSAIIKSTVTAR-DLVTSGKKENCREIEADVLR 223 +LE L V V V G PG GK+A I + V + DLV + +E I Sbjct 842 SLEVLNKEAIVDPGVHITLVDGVPGCGKTAEIIARVNWKTDLVLTPGREAAAMIRRRACA 901 Query 224 LRGMQITS----KTVDSVMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCG 279 L + + +T DS ++N + +YVDE H G LL + KK + G Sbjct 902 LHKSPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTG-LLNFALKISGCKKAFVFG 960 Query 280 DPMQCGFFNMMQLKVHFNHPEKD---ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTT 336 D Q F N + ++F++P++ I +Y++ RC + VT+ ++T+ Y + TT Sbjct 961 DAKQIPFINRV---MNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTI-YKAAVATT 1016 Query 337 NPCKKNIE-IDITGATKPKP------GDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLT 389 +P +++ I ++GA +P G II F KQ I ++V T QG T Sbjct 1017 SPVVHSVKAIKVSGAGILRPELTKIKGKII--TFTQSDKQSLIKSGYNDVNTVHEIQGET 1074 Query 390 RKGVYAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGD 432 + VR L A S HV V LTR +V+ T+ D Sbjct 1075 FEETAVVRATPTPIGLIARDSPHVLVALTRHTKAMVYYTVVFD 1117 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 830 to 1092 Score:65.1 bits(157), Expect:2e-09, Method:Compositional matrix adjust., Identities:78/274(28%), Positives:120/274(43%), Gaps:32/274(11%) Query 184 VIGTPGSGKS-AIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITS--------KTV 234 V G PG GK+ I++ + DLV KE A ++R R Q + KTV Sbjct 830 VDGVPGCGKTKEILRRVNFSEDLVLVPGKE-----AAAMIRKRANQSGNIVANNDNVKTV 884 Query 235 DSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQ 291 DS ++N G + L+VDE H G + L+ + + V GD Q + N +Q Sbjct 885 DSFLMNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLSLCNEAFVF-GDTQQIPYINRVQ 943 Query 292 LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGA- 350 H K I +T + + RC VT ++ YDG + TT+ ++++ +++ G Sbjct 944 NFPFPQHFSKLIVDETEKRRTTLRCPVDVTHFLNQC-YDGAVTTTSKTQRSVGLEVVGGA 1002 Query 351 ------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENP 404 TKP G I+ + L Y +V T QG T + V VR + P Sbjct 1003 AVMNPVTKPLKGKIVTFTQSDKLTMLSRGY--QDVNTVHEIQGETYEEVSLVR--LTPTP 1058 Query 405 LYAITSE--HVNVLLTRTEDRLVWKTLQGDPWIK 436 ++ I+ E HV V LTR + T+ DP +K Sbjct 1059 IHIISRESPHVLVGLTRHTRCFKYYTVVLDPLVK 1092 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 847 to 1103 Score:57.0 bits(136), Expect:6e-07, Method:Compositional matrix adjust., Identities:71/266(27%), Positives:117/266(43%), Gaps:26/266(9%) Query 184 VIGTPGSGKSAIIKSTVTAR-DLVTSGKKENCREIEA---DVLRLRGMQITSKTVDSVML 239 V G PG GK+ I S A DL+ +E C I D + + +T DS ++ Sbjct 847 VDGVPGCGKTQEILSRFDANSDLILVQGREACEMIRRRANDNVPGSATKENVRTFDSFVM 906 Query 240 NGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHP 299 N + L+VDE H G L+ + V + GD Q F N + ++F+ P Sbjct 907 NRKPGKFKTLWVDEGLMVHPG-LINFCINISCVSSVYIFGDRKQIPFINRV---MNFSIP 962 Query 300 EKDICTKTFYKYI-----SRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEID-ITGATKP 353 D K +Y I ++RC VT ++++ Y+ ++ + + ++++E I+G K Sbjct 963 --DNLAKLYYDEIVSRDTTKRCPLDVTHFLNSV-YEKRVMSYSNVQRSLECKMISGKAKI 1019 Query 354 KPGDIILT-----CFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAI 408 IL F K+ + +V T +QG T + V +R V PL + Sbjct 1020 NDYRSILAEGKLLTFTQEDKEYLLKAGFKDVNTVHEAQGETYRDVNLIR--VTATPLTIV 1077 Query 409 T--SEHVNVLLTRTEDRLVWKTLQGD 432 + S HV V L+R +R V+ T+ D Sbjct 1078 SAGSPHVTVALSRHTNRFVYYTVVPD 1103 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus PpK20] Sequence ID: Q9J942.2 Length: 1707 Range 1: 863 to 1160 Score:55.1 bits(131), Expect:3e-06, Method:Compositional matrix adjust., Identities:79/305(26%), Positives:136/305(44%), Gaps:24/305(7%) Query 145 EEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETIGVIGTPGSGKSA-IIKSTVTAR 203 E S V+ + T + L L+ L P V G PG GKS I+ S Sbjct 863 ERMSDYVIVCDQTYLCNNRLILDNLSALDLGPVNCSFELVDGVPGCGKSTMIVNSANPCV 922 Query 204 DLVTSGKKENCREIEADVLRLRG----MQITSKTVDSVMLNGCHKAV--EVLYVDEAFAC 257 D+V S + ++ + +G ++ KTVDS +++ ++ +VL+ DEA Sbjct 923 DVVLSTGRAATDDL-IERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMA 981 Query 258 HAGALLALIAIVRPRKKVVLCGDPMQCGFF-NMMQLKVHFNH--PEKDICTKTFYKYISR 314 HAG ++ A + K+ + GD Q F + Q+ + F+ + DI T+ Y Sbjct 982 HAG-MVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETY--- 1037 Query 315 RCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKP---KPGDIILTCFRGWVKQ-- 369 R V A+++ +Y G ++T N ++ + + + KPG +T + K+ Sbjct 1038 RSPADVAAVLNK-YYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELV 1096 Query 370 --LQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWK 427 L + +V T SQG T K V VR K ++ + A E++ V L+R LV++ Sbjct 1097 NLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSI-ARGREYLIVALSRHTQSLVYE 1155 Query 428 TLQGD 432 T++ D Sbjct 1156 TVKED 1160 >RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=134 kDa protein; AltName: Full=Methyltransferase/RNA helicase [Tobacco rattle virus-SYM] Sequence ID: P05080.2 Length: 1707 Range 1: 863 to 1160 Score:54.7 bits(130), Expect:3e-06, Method:Compositional matrix adjust., Identities:79/305(26%), Positives:136/305(44%), Gaps:24/305(7%) Query 145 EEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETIGVIGTPGSGKSA-IIKSTVTAR 203 E S V+ + T + L L+ L P V G PG GKS I+ S Sbjct 863 ERMSDYVIVCDQTYLCNNRLILDNLSALDLGPVNCSFELVDGVPGCGKSTMIVNSANPCV 922 Query 204 DLVTSGKKENCREIEADVLRLRG----MQITSKTVDSVMLNGCHKAV--EVLYVDEAFAC 257 D+V S + ++ + +G ++ KTVDS +++ ++ +VL+ DEA Sbjct 923 DVVLSTGRAATDDL-IERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMA 981 Query 258 HAGALLALIAIVRPRKKVVLCGDPMQCGFF-NMMQLKVHFNH--PEKDICTKTFYKYISR 314 HAG ++ A + K+ + GD Q F + Q+ + F+ + DI T+ Y Sbjct 982 HAG-MVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETY--- 1037 Query 315 RCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKP---KPGDIILTCFRGWVKQ-- 369 R V A+++ +Y G ++T N ++ + + + KPG +T + K+ Sbjct 1038 RSPADVAAVLNK-YYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELV 1096 Query 370 --LQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWK 427 L + +V T SQG T K V VR K ++ + A E++ V L+R LV++ Sbjct 1097 NLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSI-ARGREYLIVALSRHTQSLVYE 1155 Query 428 TLQGD 432 T++ D Sbjct 1156 TVKED 1160 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 821 to 1095 Score:53.9 bits(128), Expect:6e-06, Method:Compositional matrix adjust., Identities:73/283(26%), Positives:124/283(43%), Gaps:24/283(8%) Query 180 ETIGVIGTPGSGKS-AIIKSTVTARDLVTSGKKENCREI-----EADVLRLRGMQITSKT 233 + I V G PG GK+ II+ + DL+ KE + I +A V+R + +T Sbjct 821 KVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRADKDNV--RT 878 Query 234 VDSVMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLK 293 VDS +++ + + L++DE H G + L+ + + V GD Q F + Sbjct 879 VDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVY-GDTKQIPFICRVANF 937 Query 294 VHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDIT---GA 350 + H K + + + ++ RC VT ++ YDG + T+ +++++ ++ GA Sbjct 938 PYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK-KYDGAVMCTSAVERSVKAEVVRGKGA 996 Query 351 ----TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLY 406 T P G I+ + L+ Y +V T QG T + VR + PL Sbjct 997 LNPITLPLEGKILTFTQADKFELLEKGYK--DVNTVHEVQGETYEKTAIVR--LTSTPLE 1052 Query 407 AITSE--HVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK-GNF 446 I+S HV V LTR + T+ DP + + + K NF Sbjct 1053 IISSASPHVLVALTRHTTCCKYYTVVLDPMVNVISEMEKLSNF 1095 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2251 to 2520 Score:53.9 bits(128), Expect:6e-06, Method:Compositional matrix adjust., Identities:69/278(25%), Positives:109/278(39%), Gaps:42/278(15%) Query 188 PGSGKSAII-----KSTVTARDLVTSGKKENCREIEADVLRL------RGMQITSK--TV 234 PG GK+ + ++ L+ + K + EI A V R+ +Q + T+ Sbjct 2251 PGGGKTTTLIKVFCETFSKVNSLILTANKSSREEILAKVNRIVLDEGDTPLQTRDRILTI 2310 Query 235 DSVMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKV 294 DS ++N +VLY+DE F HAGA +A I + +L GD Q + +L Sbjct 2311 DSYLMNNRGLTCKVLYLDECFMVHAGAAVACIEFTKC-DSAILFGDSRQIRYGRCSELDT 2369 Query 295 -------HFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTN------PCKK 341 F E + Y +S RC V A +ST Y + TTN + Sbjct 2370 AVLSDLNRFVDDESRV-----YGEVSYRCPWDVCAWLSTF-YPKTVATTNLVSAGQSSMQ 2423 Query 342 NIEIDITGATKPKPGDIILTCFRGWVKQLQIDYPGHE--------VMTAAASQGLTRKGV 393 EI+ + + LT + K L + V+T +QG T + V Sbjct 2424 VREIESVDDVEYSSEFVYLTMLQSEKKDLLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483 Query 394 YAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQG 431 VR K E+ + + H+ V L+R + L + L Sbjct 2484 NLVRTKFQEDDPFR-SENHITVALSRHVESLTYSVLSS 2520 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 873 to 1088 Score:53.1 bits(126), Expect:9e-06, Method:Compositional matrix adjust., Identities:52/221(24%), Positives:99/221(44%), Gaps:13/221(5%) Query 224 LRGMQITSKTVDSVMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQ 283 +R +TVDS++++ ++ + L++DE H G + L+ ++ + GD Q Sbjct 873 IRATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLV-LISGCDIAYIYGDTQQ 931 Query 284 CGFFNMMQLKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNI 343 F N +Q + H EK + + + RC V + + Y+G + TT+ ++++ Sbjct 932 IPFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS-KYEGAVTTTSTVQRSV 990 Query 344 EIDITGA-------TKPKPGDIILTCFRGWVKQLQIDYPGHE-VMTAAASQGLTRKGVYA 395 ++ G +KP G I+ + +++ G++ V T QG T + V Sbjct 991 SSEMIGGKGVLNSVSKPLKGKIVTFT---QADKFELEEKGYKNVNTVHEIQGETFEDVSL 1047 Query 396 VRQKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIK 436 VR L + +S HV V LTR + T+ DP ++ Sbjct 1048 VRLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQ 1088 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Potato mop-top virus Sw] Sequence ID: Q9QBU0.3 Length: 1812 Range 1: 1012 to 1276 Score:52.4 bits(124), Expect:2e-05, Method:Compositional matrix adjust., Identities:72/270(27%), Positives:121/270(44%), Gaps:26/270(9%) Query 184 VIGTPGSGKSAII--KSTVTARDLVTSGKK--ENCREIEADVLRLRGMQITS-KTVDSVM 238 V G PG GKS + ++ + + +VT G++ E+ RE Q+ +TVDS + Sbjct 1012 VDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRERFKSERNATATQLKRVRTVDSYL 1071 Query 239 LNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQ-LKVHFN 297 LN VL+ DEA HAG ++ A + V+ GD Q F N ++ + + ++ Sbjct 1072 LNDTQSRANVLHFDEALMAHAG-MVYFCADDLSARSVICQGDSQQIPFINRVESITLRYS 1130 Query 298 HPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGK--MKTTNPCKKNIEI--DITGATK- 352 E D + K ++ R V + ++ ++ G + + NP ++++ G T Sbjct 1131 KLEIDNVVE---KRLTYRSPLDVASYLTKKNFYGTSVVTSANPLVRSLKTVGPRDGMTSI 1187 Query 353 ---PK-PGDIILTCFRGWVKQLQIDYPGH---EVMTAAASQGLTRKGVYAVRQKVNENPL 405 PK PG LT + ++++ Y G V T SQG T V R K +N + Sbjct 1188 YSIPKIPGTQYLTFLQSEKEEMR-QYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEI 1246 Query 406 Y---AITSEHVNVLLTRTEDRLVWKTLQGD 432 Y +S ++ V +TR LV+ T D Sbjct 1247 YPGGRNSSPYMVVGVTRHRRSLVYYTKAED 1276 >RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Raspberry bushy dwarf virus isolate R15] Sequence ID: Q05983.1 Length: 1694 Range 1: 857 to 1113 Score:51.6 bits(122), Expect:3e-05, Method:Compositional matrix adjust., Identities:74/274(27%), Positives:111/274(40%), Gaps:46/274(16%) Query 184 VIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLN-GC 242 V G G GK+ I L+ S K N EI + + I +TVDS +L+ Sbjct 857 VDGVTGCGKTTEIVRRYRPGILILSVCKANVDEIRRKLAAVDSKFI--RTVDSYLLSPSV 914 Query 243 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFN-MMQLKVHFNHPE- 300 + + L++DE H G LL I I RK V L GD Q F N + + +N E Sbjct 915 TGSCDELFIDEYGLSHPGILLLAIHISGIRK-VTLFGDSEQIPFCNRLADFPLKYNSVED 973 Query 301 ------KDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTN---------PCKKNIEI 345 ++I + T+ RC Q +T + ++ +KT + P K EI Sbjct 974 VGLNFDREIRSTTY------RCPQDITLSLQKMYKTKPIKTVSTVESSITIKPIKSEFEI 1027 Query 346 DITGATKPKPGDIILTCFRG---------WVKQLQIDYPGHEVMTAAASQGLTRKGVYAV 396 + A G ++ C W K+ EV T A+QGL+ K V Sbjct 1028 PLPNAFD---GPVLYICMTKHDESLLKLRWAKE----NISSEVRTVHAAQGLSYKNVVYF 1080 Query 397 RQKVNENPLYAITS--EHVNVLLTRTEDRLVWKT 428 R +N LY H+ V ++R D++V+ T Sbjct 1081 RLTRTDNDLYTKRKLPYHL-VAISRHTDKIVYCT 1113 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain S-1)] Sequence ID: Q9YKD6.1 Length: 1616 Range 1: 827 to 1092 Score:49.3 bits(116), Expect:1e-04, Method:Compositional matrix adjust., Identities:73/278(26%), Positives:118/278(42%), Gaps:34/278(12%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ ++ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQ-----AAEMIRRRANASGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFF 287 TVDS ++N G + L++DE H G + L+ + V GD Q + Sbjct 882 VRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLSDIAYVY-GDTQQIPYI 940 Query 288 NMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIE 344 N + HF E D + + + RC VT ++ Y+G + T+ KK++ Sbjct 941 NRVTGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHFLNQ-RYEGHVMCTSSEKKSVS 996 Query 345 ID-ITGA------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVR 397 + ++GA +KP G I+ F K+ + +V T QG T V VR Sbjct 997 QEMVSGAASINPVSKPLKGKIL--TFTQSDKEALLSRGYTDVHTVHEVQGETYADVSLVR 1054 Query 398 QKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWI 435 + A S HV V L+R L + T+ DP + Sbjct 1055 LTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLV 1092 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K2)] Sequence ID: P89676.1 Length: 1616 Range 1: 827 to 1092 Score:48.9 bits(115), Expect:2e-04, Method:Compositional matrix adjust., Identities:74/284(26%), Positives:120/284(42%), Gaps:46/284(16%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ ++ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQ-----AAEMIRRRANASGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLC------GDP 281 TVDS ++N G + L++DE H G + L+ ++ LC GD Sbjct 882 VRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLV-------EMSLCDIAYVYGDT 934 Query 282 MQCGFFNMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNP 338 Q + N + HF E D + + + RC VT ++ Y+G + T+ Sbjct 935 QQIPYINRVTGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHFLNQ-RYEGHVMCTSS 990 Query 339 CKKNIEID-ITGA------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRK 391 KK++ + ++GA +KP G I+ F K+ + +V T QG T Sbjct 991 EKKSVSQEMVSGAASINPVSKPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYA 1048 Query 392 GVYAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWI 435 V VR + A S HV V L+R L + T+ DP + Sbjct 1049 DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLV 1092 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain tomato/L] Sequence ID: P03587.2 Length: 1616 Range 1: 827 to 1092 Score:48.5 bits(114), Expect:2e-04, Method:Compositional matrix adjust., Identities:73/278(26%), Positives:118/278(42%), Gaps:34/278(12%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ ++ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQ-----AAEMIRRRANASGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFF 287 TVDS ++N G + L++DE H G + L+ + V GD Q + Sbjct 882 VRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY-GDTQQIPYI 940 Query 288 NMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIE 344 N + HF E D + + + RC VT ++ Y+G + T+ KK++ Sbjct 941 NRVTGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHFLNQ-RYEGHVMCTSSEKKSVS 996 Query 345 ID-ITGA------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVR 397 + ++GA +KP G I+ F K+ + +V T QG T V VR Sbjct 997 QEMVSGAASINPVSKPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYADVSLVR 1054 Query 398 QKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWI 435 + A S HV V L+R L + T+ DP + Sbjct 1055 LTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLV 1092 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato mosaic virus (strain Kazakh K1)] Sequence ID: Q9Q1T8.2 Length: 1616 Range 1: 827 to 1092 Score:48.5 bits(114), Expect:2e-04, Method:Compositional matrix adjust., Identities:74/284(26%), Positives:120/284(42%), Gaps:46/284(16%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ ++ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQ-----AAEMIRRRANASGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLC------GDP 281 TVDS ++N G + L++DE H G + L+ ++ LC GD Sbjct 882 VRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLV-------EMSLCDIAYVYGDT 934 Query 282 MQCGFFNMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNP 338 Q + N + HF E D + + + RC VT ++ Y+G + T+ Sbjct 935 QQIPYINRVTGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHFLNQ-RYEGHVMCTSS 990 Query 339 CKKNIEID-ITGA------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRK 391 KK++ + ++GA +KP G I+ F K+ + +V T QG T Sbjct 991 EKKSVSQEMVSGAASINPVSKPLKGKIL--TFTQSDKEALLSRGYADVHTVHEVQGETYA 1048 Query 392 GVYAVRQKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWI 435 V VR + A S HV V L+R L + T+ DP + Sbjct 1049 DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLV 1092 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 821 to 1091 Score:48.5 bits(114), Expect:2e-04, Method:Compositional matrix adjust., Identities:69/277(25%), Positives:116/277(41%), Gaps:20/277(7%) Query 184 VIGTPGSGKS-AIIKSTVTARDLVTSGKKENCREI-----EADVLRLRGMQITSKTVDSV 237 V G PG GK+ I++ + DLV KE + I +A + R + +TVDS Sbjct 821 VDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDNV--RTVDSF 878 Query 238 MLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFN 297 +++ + + L++DE H G + L+ + V D Q F + + Sbjct 879 LMHPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYV-DTQQIPFICRVANFPYPA 937 Query 298 HPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDIT---GA---- 350 H K + + + ++ RC VT ++ YDG + T+ ++++ ++ GA Sbjct 938 HFAKLVVDEKEDRRVTLRCPADVTYFLNQ-KYDGSVLCTSSVERSVSAEVVRGKGALNPI 996 Query 351 TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITS 410 T P G I+ F K +D +V T QG T + VR + + S Sbjct 997 TLPLEGKIL--TFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRAS 1054 Query 411 EHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK-GNF 446 HV V LTR R + T+ DP + + + K NF Sbjct 1055 PHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNF 1091 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tomato brown rugose fruit virus Tom1-Jo] Sequence ID: A0A0S2T050.1 Length: 1615 Range 1: 827 to 1100 Score:48.1 bits(113), Expect:4e-04, Method:Compositional matrix adjust., Identities:71/281(25%), Positives:117/281(41%), Gaps:24/281(8%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLRGMQITS---KTVD 235 + + V G PG GK+ I S V DL+ K+ I+ +Q T +TVD Sbjct 827 KVVLVDGVPGCGKTKEILSKVNFEEDLILVPGKQAAEMIKRRANASGIIQATRDNVRTVD 886 Query 236 SVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQ- 291 S ++N G + L++DE H G + L+++ V GD Q + N + Sbjct 887 SFIMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVY-GDTQQIPYINRVSG 945 Query 292 --LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEID-IT 348 HF E D + + + RC +T ++ Y+G + T+ KK++ + ++ Sbjct 946 FPYPAHFAKIEVD---EVETRRTTLRCPADITHYLNR-RYEGYVMCTSSVKKSVSQEMVS 1001 Query 349 GA------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNE 402 GA +KP G ++ F K+ + +V T QG T V VR Sbjct 1002 GAAMINPVSKPLNGKVL--TFTQSDKEALLSRGYTDVHTVHEVQGETYADVSLVRLTPTP 1059 Query 403 NPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 + A S HV V L+R L + T+ DP + ++ K Sbjct 1060 VSIIAGDSPHVLVALSRHTQTLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Broad bean mottle virus] Sequence ID: Q00020.1 Length: 966 Range 1: 686 to 832 Score:47.4 bits(111), Expect:6e-04, Method:Compositional matrix adjust., Identities:44/160(28%), Positives:72/160(45%), Gaps:27/160(16%) Query 182 IGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIE----ADVLRLRGMQITSKTVDS 236 + V G G GK+ IK T +D++ + +++ ++ D +T DS Sbjct 686 VMVDGVAGCGKTTAIKETFRFEKDIIVTANRKSAEDVRKAIFGDASDSEVALKVVRTADS 745 Query 237 VMLNG---CHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF------F 287 +++G CH+ L VDEA H G LLA+ + + +V+ GD Q F F Sbjct 746 AIMHGLPECHR----LLVDEAGLLHYGQLLAVADLCKC-SEVLAFGDTEQISFKSRDATF 800 Query 288 NMMQLKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTL 327 M + ++ ++DI +KTF RC Q V + V L Sbjct 801 RMKYCNIEYD--KRDIVSKTF------RCPQDVVSAVKIL 832 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cowpea chlorotic mottle virus] Sequence ID: P27752.1 Length: 958 Range 1: 682 to 828 Score:45.8 bits(107), Expect:0.001, Method:Compositional matrix adjust., Identities:49/157(31%), Positives:73/157(46%), Gaps:21/157(13%) Query 186 GTPGSGKSAIIKSTVT-ARDLVTSGKKENCREI-EADVLRLRGMQITSK---TVDSVMLN 240 G G GK+ IKS A LV + K++ ++ EA +I K T DS +++ Sbjct 682 GVAGCGKTTAIKSASNIAEHLVVTANKKSAEDVREALFPHNPSSEIAFKVIRTADSALMH 741 Query 241 GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF------FNMMQLKV 294 G + +L VDEA H G LLA+ A+ + + V+ GD Q F F + + Sbjct 742 GLPRCKRLL-VDEAGLLHYGQLLAVAALCKC-QSVLAFGDTEQISFKSRDATFRLKYGDL 799 Query 295 HFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDG 331 F+ +DI T+T+ RC Q V + V TL G Sbjct 800 QFD--SRDIVTETW------RCPQDVISAVQTLKRGG 828 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Brome mosaic virus] Sequence ID: P03588.1 Length: 961 Range 1: 683 to 938 Score:45.1 bits(105), Expect:0.002, Method:Compositional matrix adjust., Identities:66/271(24%), Positives:108/271(39%), Gaps:50/271(18%) Query 184 VIGTPGSGKSAIIKSTV-TARDLVTSGKKENCREIEA----DVLRLRGMQITSKTVDSVM 238 V G G GK+ IK DL+ + +++ ++ D + +T DS + Sbjct 683 VDGVAGCGKTTAIKDAFRMGEDLIVTANRKSAEDVRMALFPDTYNSKVALDVVRTADSAI 742 Query 239 LNG---CHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF------FNM 289 ++G CH+ L VDEA H G LL + A+ + +V+ GD Q F F + Sbjct 743 MHGVPSCHR----LLVDEAGLLHYGQLLVVAALSKC-SQVLAFGDTEQISFKSRDAGFKL 797 Query 290 MQLKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITG 349 + + ++ +D+ KT+ RC Q V A V+ L + T E ++ Sbjct 798 LHGNLQYD--RRDVVHKTY------RCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSR 849 Query 350 ATKPK-----------PGDIILTCFRGWVKQLQI---DYP-------GHEVMTAAASQGL 388 + + P LT + LQ D+P GH + T +QG+ Sbjct 850 SLTKRRITSGLQVTIDPNRTYLTMTQADKAALQTRAKDFPVSKDWIDGH-IKTVHEAQGI 908 Query 389 TRKGVYAVRQKVNENPLYAITSEHVNVLLTR 419 + V VR K + L+ E+ V LTR Sbjct 909 SVDNVTLVRLKSTKCDLFK-HEEYCLVALTR 938 >RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=Methyltransferase/RNA helicase [Peanut clump virus 87/TGTA2] Sequence ID: Q84687.2 Length: 1672 Range 1: 845 to 1118 Score:43.5 bits(101), Expect:0.008, Method:Compositional matrix adjust., Identities:79/288(27%), Positives:114/288(39%), Gaps:42/288(14%) Query 173 PAVPYKVETIGVIGTPGSGKSAIIKSTVTA-RDLVTSGKKENCREIEADVLRLRGMQI-- 229 P KV I G PG GKS I S R +V + +E D LR R + Sbjct 845 PKTQLKVRLID--GVPGCGKSTWILSNCDLDRQIVLAEGRE-----ATDDLRRRFTEKGF 897 Query 230 -------TSKTVDSVMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPM 282 +TV S ML + + DEA HAG + ++ R+ V+ GD Sbjct 898 PKKRCEERVRTVHSFMLKPLSRRFNSFHFDEALMAHAGMIYICGRMLNARE-VICQGDSK 956 Query 283 QCGFFNMMQ---LKVH-FNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYD------GK 332 Q F N ++ LK FN E++ KT+ RC + ++ Y G Sbjct 957 QIPFINRVEQISLKYSSFNVVEREHVRKTY------RCPLDIVYYLNKKKYYRGDDIVGY 1010 Query 333 MKTTNPCK-KNIEIDITGATK-PKPGDIILTCFRGWVKQLQ---IDYPGHEVMTAAASQG 387 KTT+ K+ T K PK LT + +++ G V T +QG Sbjct 1011 SKTTHSVDTKSKSSGFTSLVKLPKEPVHYLTFLQAEKEEVSKHLAGVKGATVSTVHEAQG 1070 Query 388 LTRKGVYAVRQKVNENPLY---AITSEHVNVLLTRTEDRLVWKTLQGD 432 T + V VR K+ +N LY A + + V LTR LV+ ++ D Sbjct 1071 KTFERVNLVRLKMTDNELYPGGAKSEPYTIVGLTRHTRSLVYYSVVED 1118 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain B395A] Sequence ID: Q9YQ08.1 Length: 1616 Range 1: 827 to 1100 Score:42.7 bits(99), Expect:0.014, Method:Compositional matrix adjust., Identities:75/286(26%), Positives:120/286(41%), Gaps:34/286(11%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ K+ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-----AAEMIRRRANSSGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFF 287 TVDS M+N + L++DE H G + L+A+ V GD Q + Sbjct 882 VKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVY-GDTQQIPYI 940 Query 288 NMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIE 344 N + HF E D + + + RC VT ++ Y+G + +T+ KK++ Sbjct 941 NRVSGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVS 996 Query 345 IDITGA-------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVR 397 ++ G +KP G I+ F K+ + +V T QG T V VR Sbjct 997 QEMVGGAAVINPISKPSHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVR 1054 Query 398 QKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 + A S HV V L+R L + T+ DP + ++ K Sbjct 1055 LTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain NT9)] Sequence ID: O40976.1 Length: 993 Range 1: 712 to 816 Score:42.0 bits(97), Expect:0.021, Method:Compositional matrix adjust., Identities:30/107(28%), Positives:52/107(48%), Gaps:6/107(5%) Query 184 VIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLRGMQITS---KTVDSVML 239 V G G GK+ IKS + D++ + K++ +++ + + + +T DSV+L Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF 286 N C VL VDE H G L A+++ ++ + + GD Q F Sbjct 772 NECPTVSRVL-VDEVVLLHFGQLCAVMSKLKAVRAICF-GDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain FNY)] Sequence ID: P17769.2 Length: 993 Range 1: 712 to 816 Score:42.0 bits(97), Expect:0.022, Method:Compositional matrix adjust., Identities:30/107(28%), Positives:52/107(48%), Gaps:6/107(5%) Query 184 VIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLRGMQITS---KTVDSVML 239 V G G GK+ IKS + D++ + K++ +++ + + + +T DSV+L Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF 286 N C VL VDE H G L A+++ ++ + + GD Q F Sbjct 772 NECPTVSRVL-VDEVVLLHFGQLCAVMSKLKAVRAICF-GDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain O)] Sequence ID: P20122.1 Length: 993 Range 1: 712 to 816 Score:42.0 bits(97), Expect:0.022, Method:Compositional matrix adjust., Identities:30/107(28%), Positives:52/107(48%), Gaps:6/107(5%) Query 184 VIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLRGMQITS---KTVDSVML 239 V G G GK+ IKS + D++ + K++ +++ + + + +T DSV+L Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACAFVRTADSVLL 771 Query 240 NGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF 286 N C VL VDE H G L A+++ ++ + + GD Q F Sbjct 772 NECPTVSRVL-VDEVVLLHFGQLCAVMSKLKAVRAICF-GDSEQIAF 816 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Cucumber mosaic virus (strain Iizuka)] Sequence ID: Q83270.1 Length: 993 Range 1: 712 to 816 Score:42.0 bits(97), Expect:0.023, Method:Compositional matrix adjust., Identities:30/107(28%), Positives:52/107(48%), Gaps:6/107(5%) Query 184 VIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLRGMQITS---KTVDSVML 239 V G G GK+ IKS + D++ + K++ +++ + + + +T DSV+L Sbjct 712 VDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLL 771 Query 240 NGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGF 286 N C VL VDE H G L A+++ ++ + + GD Q F Sbjct 772 NECPTVSRVL-VDEVVLLHFGQLCAVMSKLKAVRAICF-GDSEQIAF 816 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain OM] Sequence ID: O93058.1 Length: 1616 Range 1: 827 to 1100 Score:42.0 bits(97), Expect:0.024, Method:Compositional matrix adjust., Identities:75/286(26%), Positives:120/286(41%), Gaps:34/286(11%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ K+ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-----AAEMIRRRANSSGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFF 287 TVDS M+N + L++DE H G + L+A+ V GD Q + Sbjct 882 VKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVY-GDTQQIPYI 940 Query 288 NMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIE 344 N + HF E D + + + RC VT ++ Y+G + +T+ KK++ Sbjct 941 NRVSGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVS 996 Query 345 IDITGA-------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVR 397 ++ G +KP G I+ F K+ + +V T QG T V VR Sbjct 997 QEMVGGAAVINPISKPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVR 1054 Query 398 QKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 + A S HV V L+R L + T+ DP + ++ K Sbjct 1055 LTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus (vulgare)] Sequence ID: P03586.2 Length: 1616 Range 1: 827 to 1100 Score:42.0 bits(97), Expect:0.026, Method:Compositional matrix adjust., Identities:75/286(26%), Positives:120/286(41%), Gaps:34/286(11%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ K+ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-----AAEMIRRRANSSGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFF 287 TVDS M+N + L++DE H G + L+A+ V GD Q + Sbjct 882 VKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYVY-GDTQQIPYI 940 Query 288 NMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIE 344 N + HF E D + + + RC VT ++ Y+G + +T+ KK++ Sbjct 941 NRVSGFPYPAHFAKLEVD---EVETRRTTLRCPADVTHYLNR-RYEGFVMSTSSVKKSVS 996 Query 345 IDITGA-------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVR 397 ++ G +KP G I+ F K+ + +V T QG T V VR Sbjct 997 QEMVGGAAVINPISKPLHGKIL--TFTQSDKEALLSRGYSDVHTVHEVQGETYSDVSLVR 1054 Query 398 QKVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 + A S HV V L+R L + T+ DP + ++ K Sbjct 1055 LTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mosaic virus strain Rakkyo] Sequence ID: Q98745.1 Length: 1616 Range 1: 827 to 1100 Score:42.0 bits(97), Expect:0.028, Method:Compositional matrix adjust., Identities:74/285(26%), Positives:118/285(41%), Gaps:32/285(11%) Query 180 ETIGVIGTPGSGKSAIIKSTVT-ARDLVTSGKKENCREIEADVLRLR----GMQITSK-- 232 + + V G PG GK+ I S V DL+ K+ A+++R R G+ + +K Sbjct 827 KVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQ-----AAEMIRRRANSSGIIVATKDN 881 Query 233 --TVDSVMLN---GCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFF 287 TVDS M+N + L++DE H G + L+A+ V GD Q + Sbjct 882 VRTVDSFMMNFGKTTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCDVAYVY-GDTQQIPYI 940 Query 288 NMMQ---LKVHFNHPEKDICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIE 344 N + HF+ E D + + + RC VT ++ + + T++ K + Sbjct 941 NRVSGFPYPAHFSKLEVD---EVETRRTTLRCPADVTHYLNRRYEGFVVSTSSVKKSVSQ 997 Query 345 IDITGA------TKPKPGDIILTCFRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQ 398 ++GA +KP G I+ F K+ + EV T QG T V VR Sbjct 998 EMVSGAAVINPISKPLHGKIL--TFTQSDKEALLSRGYSEVHTVHEVQGETYSDVSLVRL 1055 Query 399 KVNENPLYAITSEHVNVLLTRTEDRLVWKTLQGDPWIKQPTNIPK 443 + A S HV V L+R L + T+ DP + ++ K Sbjct 1056 TPTPISIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEK 1100 >RecName: Full=Replication protein 1a; Includes: RecName: Full=ATP-dependent helicase; Includes: RecName: Full=Methyltransferase [Tobacco streak virus (strain WC)] Sequence ID: P89680.1 Length: 1094 Range 1: 804 to 943 Score:41.6 bits(96), Expect:0.032, Method:Compositional matrix adjust., Identities:37/141(26%), Positives:65/141(46%), Gaps:9/141(6%) Query 184 VIGTPGSGKSAIIK-------STVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDS 236 V G G GK+ +K S + DLV + + + E++ + M+ +TVDS Sbjct 804 VDGVAGCGKTTHLKKIARIDSSAAGSPDLVLTSNRSSSDELKEVIDCPDVMKYRIRTVDS 863 Query 237 VMLNGCHKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMM-QLKVH 295 ++ + E L DE F HAG + A A + K+V+ GD Q F + + + ++ Sbjct 864 YLMLKSWFSAERLLFDECFLTHAGCVYA-AATLAQVKEVIAFGDTEQVPFISRLPEFRME 922 Query 296 FNHPEKDICTKTFYKYISRRC 316 + + I T + +S+RC Sbjct 923 HHKVKGKISCTTDHLQMSKRC 943