RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.004) ....>C:.501_:[..G]G-----C[..C]:.572_:C<.... (0.006) | 2 (0.005) ....>C:.502_:[..G]G-*---U[..U]:.571_:C<.... (0.008) | 3 (0.004) ....>C:.503_:[..C]C-----G[..G]:.570_:C<.... (0.004) | 4 (0.004) ....>C:.504_:[..C]C-----G[..G]:.569_:C<.... (0.006) | 5 (0.004) ....>C:.505_:[..C]C-----G[..G]:.568_:C<.... (0.007) | 6 (0.006) ....>C:.506_:[..C]C-----G[..G]:.567_:C<.... (0.006) | 7 (0.005) ....>C:.507_:[..A]A-----U[..U]:.566_:C<.... (0.007) | 8 (0.004) ....>C:.549_:[..G]G-----C[..C]:.565_:C<.... (0.002) | 9 (0.002) ....>C:.550_:[..G]G-----C[..C]:.564_:C<.... (0.004) | 10 (0.003) ....>C:.551_:[..G]G-----C[..C]:.563_:C<.... (0.006) | 11 (0.003) ....>C:.552_:[..G]G-----C[..C]:.562_:C<.... (0.003) | 12 (0.003) ....>C:.553_:[..G]G-----C[..C]:.561_:C<.... (0.002) | 13 (0.002) ....>C:.554_:[..U]U-**--A[..A]:.558_:C<.... (0.010) | 14 (0.005) ....>C:.555_:[..U]U-**+-G[..G]:.518_:C<.... (0.003) x 15 (0.006) ....>C:.538_:[..A]A-**--C[..C]:.532_:C<.... (0.001) | 16 (0.004) ....>C:.539_:[..G]G-----C[..C]:.531_:C<.... (0.002) | 17 (0.006) ....>C:.540_:[..G]G-----C[..C]:.530_:C<.... (0.004) | 18 (0.003) ....>C:.541_:[..C]C-----G[..G]:.529_:C<.... (0.008) | 19 (0.003) ....>C:.542_:[..C]C-----G[..G]:.528_:C<.... (0.007) | 20 (0.004) ....>C:.543_:[..G]G-----C[..C]:.527_:C<.... (0.002) | 21 (0.007) ....>C:.544_:[..A]A-**--G[..G]:.526_:C<.... (0.008) | 22 (0.008) ....>C:.510_:[..G]G-----C[..C]:.525_:C<.... (0.006) | 23 (0.003) ....>C:.511_:[..U]U-----A[..A]:.524_:C<.... (0.005) | 24 (0.003) ....>C:.512_:[..C]C-----G[..G]:.523_:C<.... (0.004) | 25 (0.007) ....>C:.513_:[..U]U-*---G[..G]:.522_:C<.... (0.009) | 26 (0.004) ....>C:.508_:[..U]U-**--A[..A]:.546_:C<.... (0.004) | 27 (0.010) ....>C:.514_:[..A]A-**--A[..A]:.521_:C<.... (0.007) | 28 (0.024) ....>C:.515_:[..G]G-**+-C[..C]:.548_:C<.... (0.013) x 29 (0.005) ....>C:.519_:[..G]G-----C[..C]:.556_:C<.... (0.002) + 30 (0.011) ....>D:.501_:[..G]G-----C[..C]:.572_:D<.... (0.008) | 31 (0.009) ....>D:.502_:[..G]G-*---U[..U]:.571_:D<.... (0.005) | 32 (0.003) ....>D:.503_:[..C]C-----G[..G]:.570_:D<.... (0.007) | 33 (0.004) ....>D:.504_:[..C]C-----G[..G]:.569_:D<.... (0.005) | 34 (0.005) ....>D:.505_:[..C]C-----G[..G]:.568_:D<.... (0.005) | 35 (0.003) ....>D:.506_:[..C]C-----G[..G]:.567_:D<.... (0.004) | 36 (0.004) ....>D:.507_:[..A]A-----U[..U]:.566_:D<.... (0.003) | 37 (0.005) ....>D:.549_:[..G]G-----C[..C]:.565_:D<.... (0.004) | 38 (0.004) ....>D:.550_:[..G]G-----C[..C]:.564_:D<.... (0.002) | 39 (0.004) ....>D:.551_:[..G]G-----C[..C]:.563_:D<.... (0.004) | 40 (0.003) ....>D:.552_:[..G]G-----C[..C]:.562_:D<.... (0.005) | 41 (0.006) ....>D:.553_:[..G]G-----C[..C]:.561_:D<.... (0.003) | 42 (0.002) ....>D:.554_:[..U]U-**--A[..A]:.558_:D<.... (0.008) | 43 (0.005) ....>D:.555_:[..U]U-**+-G[..G]:.518_:D<.... (0.002) x 44 (0.005) ....>D:.538_:[..A]A-**--C[..C]:.532_:D<.... (0.002) | 45 (0.006) ....>D:.539_:[..G]G-----C[..C]:.531_:D<.... (0.005) | 46 (0.008) ....>D:.540_:[..G]G-----C[..C]:.530_:D<.... (0.003) | 47 (0.003) ....>D:.541_:[..C]C-----G[..G]:.529_:D<.... (0.005) | 48 (0.006) ....>D:.542_:[..C]C-----G[..G]:.528_:D<.... (0.006) | 49 (0.008) ....>D:.543_:[..G]G-----C[..C]:.527_:D<.... (0.002) | 50 (0.004) ....>D:.544_:[..A]A-**--G[..G]:.526_:D<.... (0.007) | 51 (0.003) ....>D:.510_:[..G]G-----C[..C]:.525_:D<.... (0.008) | 52 (0.007) ....>D:.511_:[..U]U-----A[..A]:.524_:D<.... (0.005) | 53 (0.004) ....>D:.512_:[..C]C-----G[..G]:.523_:D<.... (0.005) | 54 (0.004) ....>D:.513_:[..U]U-*---G[..G]:.522_:D<.... (0.008) | 55 (0.007) ....>D:.508_:[..U]U-**--A[..A]:.546_:D<.... (0.013) | 56 (0.006) ....>D:.514_:[..A]A-**--A[..A]:.521_:D<.... (0.005) | 57 (0.024) ....>D:.515_:[..G]G-**+-C[..C]:.548_:D<.... (0.004) x 58 (0.006) ....>D:.519_:[..G]G-----C[..C]:.556_:D<.... (0.003) + Detailed H-bond information: atom-name pair and length [ O N] 1 G-----C [3] O6 - N4 2.65 N1 - N3 2.87 N2 - O2 3.16 2 G-*---U [2] O6 - N3 2.90 N1 - O2 2.87 3 C-----G [3] O2 - N2 2.90 N3 - N1 2.96 N4 - O6 2.95 4 C-----G [3] O2 - N2 2.82 N3 - N1 3.03 N4 - O6 3.13 5 C-----G [3] O2 - N2 2.90 N3 - N1 2.87 N4 - O6 2.74 6 C-----G [3] O2 - N2 2.71 N3 - N1 2.81 N4 - O6 2.89 7 A-----U [2] N6 - O4 2.95 N1 - N3 3.00 8 G-----C [2] N1 - N3 3.31 N2 - O2 2.76 9 G-----C [3] O6 - N4 2.98 N1 - N3 2.96 N2 - O2 2.81 10 G-----C [3] O6 - N4 3.17 N1 - N3 2.97 N2 - O2 2.63 11 G-----C [3] O6 - N4 2.86 N1 - N3 2.86 N2 - O2 2.73 12 G-----C [3] O6 - N4 2.64 N1 - N3 2.92 N2 - O2 3.08 13 U-**--A [2] O2 - N6 3.05 N3 - N7 3.23 14 U-**+-G [1] O2 - N2 2.65 15 A-**--C [1] N6 - O2 3.07 16 G-----C [3] O6 - N4 3.09 N1 - N3 2.91 N2 - O2 2.71 17 G-----C [3] O6 - N4 3.33 N1 - N3 3.00 N2 - O2 2.64 18 C-----G [3] O2 - N2 2.61 N3 - N1 2.71 N4 - O6 2.71 19 C-----G [3] O2 - N2 2.64 N3 - N1 2.95 N4 - O6 3.16 20 G-----C [3] O6 - N4 3.17 N1 - N3 2.97 N2 - O2 2.85 21 A-**--G [2] N6 - O6 3.08 N1 - N1 2.88 22 G-----C [3] O6 - N4 2.75 N1 - N3 2.81 N2 - O2 2.76 23 U-----A [2] N3 - N1 2.76 O4 - N6 3.11 24 C-----G [3] O2 - N2 2.74 N3 - N1 2.80 N4 - O6 2.76 25 U-*---G [2] O2 - N1 2.56 N3 - O6 2.90 26 U-**--A [2] O3'- O2' 2.77 O2'- N3 3.23 27 A-**--A [2] N6 - N3 3.09 N1 - O2' 2.83 28 G-**+-C [2] N1 - O2 3.13 N2 - N3 2.77 29 G-----C [3] O6 - N4 3.33 N1 - N3 2.92 N2 - O2 2.81 30 G-----C [3] O6 - N4 2.63 N1 - N3 2.84 N2 - O2 3.15 31 G-*---U [2] O6 - N3 2.94 N1 - O2 2.84 32 C-----G [3] O2 - N2 2.85 N3 - N1 2.89 N4 - O6 2.89 33 C-----G [3] O2 - N2 2.77 N3 - N1 3.03 N4 - O6 3.15 34 C-----G [3] O2 - N2 2.91 N3 - N1 2.89 N4 - O6 2.75 35 C-----G [3] O2 - N2 2.70 N3 - N1 2.80 N4 - O6 2.87 36 A-----U [2] N6 - O4 2.92 N1 - N3 2.97 37 G-----C [2] N1 - N3 3.33 N2 - O2 2.81 38 G-----C [3] O6 - N4 2.99 N1 - N3 2.97 N2 - O2 2.83 39 G-----C [3] O6 - N4 3.20 N1 - N3 3.01 N2 - O2 2.68 40 G-----C [3] O6 - N4 2.87 N1 - N3 2.86 N2 - O2 2.73 41 G-----C [3] O6 - N4 2.67 N1 - N3 2.96 N2 - O2 3.12 42 U-**--A [2] O2 - N6 3.02 N3 - N7 3.21 43 U-**+-G [1] O2 - N2 2.96 44 A-**--C [1] N6 - O2 3.07 45 G-----C [3] O6 - N4 3.01 N1 - N3 2.85 N2 - O2 2.62 46 G-----C [3] O6 - N4 3.29 N1 - N3 2.99 N2 - O2 2.66 47 C-----G [3] O2 - N2 2.63 N3 - N1 2.71 N4 - O6 2.68 48 C-----G [3] O2 - N2 2.61 N3 - N1 2.87 N4 - O6 3.03 49 G-----C [3] O6 - N4 3.18 N1 - N3 2.95 N2 - O2 2.83 50 A-**--G [2] N6 - O6 3.08 N1 - N1 2.85 51 G-----C [3] O6 - N4 2.73 N1 - N3 2.84 N2 - O2 2.82 52 U-----A [2] N3 - N1 2.76 O4 - N6 3.12 53 C-----G [3] O2 - N2 2.76 N3 - N1 2.84 N4 - O6 2.81 54 U-*---G [2] O2 - N1 2.52 N3 - O6 2.81 55 U-**--A [2] O2'- O2' 2.73 O2 * N1 3.48 56 A-**--A [2] N6 - N3 3.06 N1 - O2' 2.84 57 G-**+-C [2] N1 - O2 3.05 N2 - N3 2.77 58 G-----C [2] N1 - N3 3.49 N2 - O2 3.21