RID: 6A4KR7EU01R Job Title:Protein Sequence Program: BLASTP Query: unnamed protein product ID: lcl|Query_655763(amino acid) Length: 613 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 1280 1280 100% 0.0 100.00 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 1058 1058 99% 0.0 81.67 2480 P13887.2 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Ross river v... NA 11032 1055 1055 99% 0.0 81.01 1149 P13888.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 1054 1054 99% 0.0 80.69 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 1045 1045 99% 0.0 80.03 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 1045 1045 99% 0.0 80.20 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 1024 1024 99% 0.0 78.40 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 1020 1020 99% 0.0 78.07 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 1018 1018 99% 0.0 77.91 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 1018 1018 99% 0.0 79.21 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 1015 1015 99% 0.0 78.72 2474 Q5XXP4.1 RecName: Full=Polyprotein nsP1234; Short=P1234; AltName:... Middelburg v... NA 11023 994 994 99% 0.0 76.62 995 P03318.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 952 952 99% 0.0 73.98 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 951 951 99% 0.0 73.81 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 926 926 99% 0.0 72.50 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 923 923 99% 0.0 72.53 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 891 891 99% 0.0 69.56 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 889 889 99% 0.0 72.04 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 887 887 99% 0.0 72.37 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 876 876 99% 0.0 72.04 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 876 876 99% 0.0 71.38 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 874 874 99% 0.0 70.39 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 874 874 99% 0.0 71.22 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 376610 873 873 99% 0.0 70.39 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 873 873 99% 0.0 70.89 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 684 684 99% 0.0 55.21 2593 Q8QL53.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 681 681 99% 0.0 54.99 2601 Q8JJX1.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 74.7 74.7 68% 1e-12 22.88 1597 Q66220.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 71.2 71.2 64% 1e-11 23.34 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Obuda pepper... NA 31749 67.4 67.4 61% 2e-10 24.16 1616 P90211.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Sunn-hemp mo... NA 12240 63.2 63.2 69% 6e-09 21.90 1629 P89202.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Brome mosaic... NA 12302 60.8 60.8 28% 3e-08 29.05 822 P03594.1 RecName: Full=Replicase polyprotein 1ab; Contains: RecName:... Beet yellows... NA 478555 60.1 60.1 60% 5e-08 24.61 3094 Q08534.2 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cowpea chlor... NA 12303 51.6 51.6 27% 2e-05 26.35 808 P20179.1 RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a... Cucumber mos... NA 12310 41.6 41.6 57% 0.019 21.51 839 P06012.1 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 1819 to 2431 Score:1280 bits(3313), Expect:0.0, Method:Compositional matrix adjust., Identities:613/613(100%), Positives:613/613(100%), Gaps:0/613(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN Sbjct 1819 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 1878 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV Sbjct 1879 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 1938 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1939 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 1998 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE Sbjct 1999 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 2058 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT Sbjct 2059 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 2118 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH Sbjct 2119 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 2178 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT Sbjct 2179 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 2238 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA Sbjct 2239 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 2298 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED Sbjct 2299 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 2358 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR Sbjct 2359 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 2418 Query 601 GPVIHLYGGPRLV 613 GPVIHLYGGPRLV Sbjct 2419 GPVIHLYGGPRLV 2431 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 1870 to 2480 Score:1058 bits(2737), Expect:0.0, Method:Compositional matrix adjust., Identities:499/611(82%), Positives:542/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQH L C L A EEE+ YPP LD REKLL KMQM P+EAN Sbjct 1870 YIFSSDTGPGHLQQKSVRQHALPCEMLYAHEEERTYPPALDEAREKLLQAKMQMAPTEAN 1929 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKA ++DRL GAR Y +IPTYA +YPRPVYSP+V + SP+V Sbjct 1930 KSRYQSRKVENMKAVIIDRLKDGARTYLAEQSEKIPTYASKYPRPVYSPSVEDSLQSPEV 1989 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACN +L NYPTVASYQITDEYDAYLDMVDGS+SCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1990 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2049 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P VRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK++AC+GEYW+E Sbjct 2050 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNGEYWQE 2109 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIRITTENITTYVT+LKGPKAAALFAKTHNLVPLQEVPMDRF VDMKRDVKVTPGT Sbjct 2110 FKDDPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 2169 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA+H Sbjct 2170 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 2229 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVDQ LLDLIE AFGEI+S HLPTGT Sbjct 2230 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEEAFGEITSVHLPTGT 2289 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINT+LNI IA RVL ++LT+S CAAFIGDDNIVHGV SD LMA Sbjct 2290 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLREKLTNSICAAFIGDDNIVHGVRSDPLMA 2349 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCASWVNMEVKIIDA M EKPPYFCGGFI++D+VT +ACRV+DPLKRLFKLGKPL A D Sbjct 2350 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDNVTGSACRVADPLKRLFKLGKPLPAGD 2409 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QDEDRRRAL DE +W R GL +ELE+AL+SRYEV G +I+ AMATLA+ +K FKKLR Sbjct 2410 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 2469 Query 601 GPVIHLYGGPR 611 GP++HLYGGP+ Sbjct 2470 GPIVHLYGGPK 2480 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN T48)] Sequence ID: P13888.2 Length: 1149 Range 1: 539 to 1149 Score:1055 bits(2727), Expect:0.0, Method:Compositional matrix adjust., Identities:495/611(81%), Positives:539/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQH L C L EEE+ YPP LD REKLL KMQM P+EAN Sbjct 539 YIFSSDTGPGHLQQKSVRQHALPCEMLYVHEEERTYPPALDEAREKLLQAKMQMAPTEAN 598 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKA ++DRL GAR Y +IPTY +YPRPVYSP+V + +P+V Sbjct 599 KSRYQSRKVENMKAVIIDRLKDGARTYLTEQSEKIPTYVSKYPRPVYSPSVEDSLQNPEV 658 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACN +L NYPTVASYQITDEYDAYLDMVDGS+SCLDRATFCPAKLRCYPKHHAYHQ Sbjct 659 AVAACNAFLEANYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQ 718 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P VRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV NVECFK++AC+GEYW+E Sbjct 719 PQVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVLNVECFKKFACNGEYWQE 778 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIRITTENITTYVT+LKGPKAAALFAKTHNLVPLQEVPMDRF VDMKRDVKVTPGT Sbjct 779 FKDNPIRITTENITTYVTRLKGPKAAALFAKTHNLVPLQEVPMDRFVVDMKRDVKVTPGT 838 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA+H Sbjct 839 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLAPNIHTLFDMSAEDFDAIIAAH 898 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVDQ LLDLIEAAFGEI+S HLPTGT Sbjct 899 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 958 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LNI IA RVL ++LT+S CAAFIGDDNIVHGV SD LMA Sbjct 959 RFKFGAMMKSGMFLTLFVNTLLNIVIACRVLREKLTNSVCAAFIGDDNIVHGVRSDPLMA 1018 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCASWVNMEVKIIDA M EKPPYFCGGFI++D VT +ACRV+DPLKRLFKLGKPL A D Sbjct 1019 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDKVTGSACRVADPLKRLFKLGKPLPAGD 1078 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QDEDRRRAL DE +W R GL +ELE+AL+SRYEV G +I+ AMATLA+ +K FKKLR Sbjct 1079 TQDEDRRRALKDETDRWARVGLKSELEIALSSRYEVNGTGNIVRAMATLAKSLKNFKKLR 1138 Query 601 GPVIHLYGGPR 611 GP++HLYGGP+ Sbjct 1139 GPIVHLYGGPK 1149 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 1827 to 2437 Score:1054 bits(2726), Expect:0.0, Method:Compositional matrix adjust., Identities:493/611(81%), Positives:549/611(89%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSD G GHLQQKSVRQH+L+ +D V EEK+YPPKLD +EK LLLK+QMH ++AN Sbjct 1827 YIFSSDVGPGHLQQKSVRQHDLEVPIMDRVIEEKVYPPKLDEAKEKQLLLKLQMHATDAN 1886 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKAT++DRL G+ Y A + TY VRY +P YS V++R SS + Sbjct 1887 RSRYQSRKVENMKATIIDRLKQGSAYYVSAAADKAVTYHVRYAKPRYSVPVMQRLSSATI 1946 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CNE+L+RNYPTVASYQITDEYDAYLDMVDGS+SCLDRA FCPAKLRCYPKHHAYH Sbjct 1947 AVATCNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRANFCPAKLRCYPKHHAYHM 2006 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAV+NVECF++YAC+ EYWEE Sbjct 2007 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVYNVECFRKYACNNEYWEE 2066 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +AK+PIRITTEN+TTYVTKLKG KAAALFAKTHNLVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2067 FAKKPIRITTENLTTYVTKLKGGKAAALFAKTHNLVPLQEVPMDRFIMDMKRDVKVTPGT 2126 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAII+ H Sbjct 2127 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIISEH 2186 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALTGLMILEDLGVD LLDLIEAAFG+I+SCHLPTGT Sbjct 2187 FKPGDHVLETDIASFDKSQDDSLALTGLMILEDLGVDNQLLDLIEAAFGQITSCHLPTGT 2246 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINTVLNITIASRVLE RLT+SACAAFIGDDN+VHGV+SDKLMA Sbjct 2247 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEARLTNSACAAFIGDDNVVHGVVSDKLMA 2306 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+WVNMEVKIIDAVM KPPYFCGGF+V+D VT+TACR++DPLKRLFKLGKPL A+D Sbjct 2307 DRCATWVNMEVKIIDAVMCIKPPYFCGGFLVYDHVTRTACRIADPLKRLFKLGKPLPADD 2366 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QDEDRRRAL DEV KW R+GLG+E+EVAL SRY +EG ++L+AM+T A +K F LR Sbjct 2367 CQDEDRRRALYDEVKKWSRSGLGSEIEVALASRYRLEGSYNLLLAMSTFAHSMKNFSALR 2426 Query 601 GPVIHLYGGPR 611 GPVIHLYGGP+ Sbjct 2427 GPVIHLYGGPK 2437 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 1857 to 2467 Score:1045 bits(2703), Expect:0.0, Method:Compositional matrix adjust., Identities:489/611(80%), Positives:542/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQ+SVRQH L C L A E+E++YPP D E+EK+L KMQM P+EAN Sbjct 1857 YIFSSDTGPGHLQQRSVRQHELPCETLYAHEDERIYPPAFDGEKEKILQAKMQMAPTEAN 1916 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKA +V+RL GA+LY ++PTY +YPRPVYSP+V + S+P+V Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSNPEV 1976 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACN +L NYPTVA+YQITDEYDAYLD+VDGS+SCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVE FK+YAC+GEYW+E Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIRITTENITTYV KLKGPKAAALFAKTHNLVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA+H Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVDQ LLDLIEAAFGEI+S HLPTGT Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINT+LNI IA RVL +L+ SACAAFIGDDNIVHGV SD LMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCASWVNMEVKIIDA M EKPPYFCGGFI++DSV TACRV+DPLKRLFKLGKPL A+D Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QDEDRRRAL DE KW R GL EL+VAL+SRY+V G +I AM+TL++++K+F+K+R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKNLKSFRKIR 2456 Query 601 GPVIHLYGGPR 611 GP+IHLYGGP+ Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 1857 to 2467 Score:1045 bits(2701), Expect:0.0, Method:Compositional matrix adjust., Identities:490/611(80%), Positives:540/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQH L C L A E+E++YPP D E+EK+L KMQM P+EAN Sbjct 1857 YIFSSDTGPGHLQQKSVRQHELPCETLYAHEDERIYPPAFDGEKEKVLQAKMQMAPTEAN 1916 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKA +V+RL GA+LY ++PTY +YPRPVYSP+V + S P+V Sbjct 1917 KSRYQSRKVENMKALIVERLREGAKLYLHEQTDKVPTYTSKYPRPVYSPSVDDSLSDPEV 1976 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACN +L NYPTVA+YQITDEYDAYLD+VDGS+SCLDRATFCPAKLRCYPKHHAYHQ Sbjct 1977 AVAACNSFLEENYPTVANYQITDEYDAYLDLVDGSESCLDRATFCPAKLRCYPKHHAYHQ 2036 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVE FK+YAC+GEYW+E Sbjct 2037 PQIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVESFKKYACTGEYWQE 2096 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIRITTENITTYV KLKGPKAAALFAKTHNLVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2097 FKDNPIRITTENITTYVAKLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2156 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA+H Sbjct 2157 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLKAVLTPNIHTLFDMSAEDFDAIIAAH 2216 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVDQ LLDLIEAAFGEI+S HLPTGT Sbjct 2217 FQPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDQELLDLIEAAFGEITSVHLPTGT 2276 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINT+LNI IA RVL +L+ SACAAFIGDDNIVHGV SD LMA Sbjct 2277 RFKFGAMMKSGMFLTLFINTLLNIVIACRVLRDKLSSSACAAFIGDDNIVHGVRSDPLMA 2336 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCASWVNMEVKIIDA M EKPPYFCGGFI++DSV TACRV+DPLKRLFKLGKPL A+D Sbjct 2337 ERCASWVNMEVKIIDATMCEKPPYFCGGFILYDSVAGTACRVADPLKRLFKLGKPLPADD 2396 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QDEDRRRAL DE KW R GL EL+VAL+SRY+V G +I AM+TL++ +K+F+K+R Sbjct 2397 NQDEDRRRALKDETVKWSRIGLREELDVALSSRYQVSGVGNITRAMSTLSKSLKSFRKIR 2456 Query 601 GPVIHLYGGPR 611 GP+IHLYGGP+ Sbjct 2457 GPIIHLYGGPK 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 1903 to 2513 Score:1024 bits(2647), Expect:0.0, Method:Compositional matrix adjust., Identities:479/611(78%), Positives:541/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L ++ V EEK YPPKLD +E+LLL ++Q S AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDETKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKAT++ RL G RLY +D R+P+Y + YP PVYSP++ + S+P+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSINIKLSNPET 2022 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CNE+L+RNYPTVASYQ+TDEYDAYLDMVDGS+SCLDRATF P+KLR YPK H+YH Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFK+YAC+ EYW E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A PIR+TTEN+T YVTKLKGPKAAALFAKTHNL+PLQEVPMDRFT+DMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDAIIA+H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2262 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT +M+LEDLGVDQ +LDLIEAAFGEISSCHLPTGT Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE+RLT SACAAFIGDDNI+HGV+SD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 RCA+W+NMEVKIIDAV+ EK PYFCGGFI+ D+VT T+CRV+DPLKRLFKLGKPL A D Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QDEDRRRAL+DEV++W RTGL ELE A+ SRYEV+G +++ +MAT A + FKKLR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 601 GPVIHLYGGPR 611 GPV+ LYGGP+ Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 1903 to 2513 Score:1020 bits(2638), Expect:0.0, Method:Compositional matrix adjust., Identities:477/611(78%), Positives:541/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L ++ V EEK YPPKLD +E+LLL ++Q S AN Sbjct 1903 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1962 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKAT++ RL G RLY +D R+P+Y + YP PVYSP++ + ++P+ Sbjct 1963 RSRYQSRKVENMKATIIHRLKEGCRLYLASDTPRVPSYRITYPAPVYSPSISIKLNNPET 2022 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CNE+L+RNYPTVASYQ+TDEYDAYLDMVDGS+SCLDRATF P+KLR YPK H+YH Sbjct 2023 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2082 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFK+YAC+ EYW E Sbjct 2083 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2142 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A PIR+TTEN+T YVTKLKGPKAAALFAKTHNL+PLQEVPMDRFT+DMKRDVKVTPGT Sbjct 2143 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDAII++H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIISTH 2262 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT +M+LEDLGVDQ +LDLIEAAFGEISSCHLPTGT Sbjct 2263 FKPGDAVLETDIASFDKSQDDSLALTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE+RLT SACAAFIGDDNI+HGV+SD LMA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2382 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 RCA+W+NMEVKIIDAV+ EK PYFCGGFI+ D+VT T+CRV+DPLKRLFKLGKPL A D Sbjct 2383 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2442 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QDEDRRRAL+DEV++W RTGL ELE A+ SRYEV+G +++ +MAT A + FKKLR Sbjct 2443 EQDEDRRRALADEVTRWQRTGLITELEKAVYSRYEVQGITAVITSMATFASSKENFKKLR 2502 Query 601 GPVIHLYGGPR 611 GPV+ LYGGP+ Sbjct 2503 GPVVTLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 1904 to 2514 Score:1018 bits(2631), Expect:0.0, Method:Compositional matrix adjust., Identities:476/611(78%), Positives:540/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L ++ V EEK YPPKLD +E+LLL ++Q S AN Sbjct 1904 YIFSSDTGQGHLQQKSVRQTTLPVNIVEEVHEEKCYPPKLDEIKEQLLLKRLQESASTAN 1963 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKAT++ RL G RLY ++ R+P+Y V YP P+YSP++ + ++P+ Sbjct 1964 RSRYQSRKVENMKATIIHRLKEGCRLYLASETPRVPSYRVTYPAPIYSPSINIKLTNPET 2023 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CNE+L+RNYPTVASYQ+TDEYDAYLDMVDGS+SCLDRATF P+KLR YPK H+YH Sbjct 2024 AVAVCNEFLARNYPTVASYQVTDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2083 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFK+YAC+ EYW E Sbjct 2084 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKKYACNQEYWRE 2143 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A PIR+TTEN+T YVTKLKGPKAAALFAKTHNL+PLQEVPMDRFT+DMKRDVKVTPGT Sbjct 2144 FASSPIRVTTENLTMYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTMDMKRDVKVTPGT 2203 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDAIIA+H Sbjct 2204 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIATH 2263 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLA T +M+LEDLGVDQ +LDLIEAAFGEISSCHLPTGT Sbjct 2264 FKPGDAVLETDIASFDKSQDDSLASTAMMLLEDLGVDQPILDLIEAAFGEISSCHLPTGT 2323 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE+RLT SACAAFIGDDNI+HGV+SD LMA Sbjct 2324 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEERLTTSACAAFIGDDNIIHGVVSDALMA 2383 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 RCA+W+NMEVKIIDAV+ EK PYFCGGFI+ D+VT T+CRV+DPLKRLFKLGKPL A D Sbjct 2384 ARCATWMNMEVKIIDAVVSEKAPYFCGGFILHDTVTGTSCRVADPLKRLFKLGKPLAAGD 2443 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QDEDRRRAL+DEV++W RTGL ELE A+ SRYEV+G +++ +MAT A + FKKLR Sbjct 2444 EQDEDRRRALADEVTRWQRTGLVTELEKAVYSRYEVQGITAVITSMATFANSKENFKKLR 2503 Query 601 GPVIHLYGGPR 611 GPV+ LYGGP+ Sbjct 2504 GPVVTLYGGPK 2514 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 1864 to 2474 Score:1018 bits(2631), Expect:0.0, Method:Compositional matrix adjust., Identities:484/611(79%), Positives:538/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L L+ V EEK YPPKLD +E+LLL K+Q S AN Sbjct 1864 YIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKAT++ RL G RLY ++ ++PTY YP PVYSP + R S+P+ Sbjct 1924 RSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTYPAPVYSPPINVRLSNPES 1983 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACNE+L+RNYPTV+SYQITDEYDAYLDMVDGS+SCLDRATF P+KLR YPK HAYH Sbjct 1984 AVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHAYHA 2043 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P++RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK++AC+ EYWEE Sbjct 2044 PSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWEE 2103 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A PIRITTEN+TTYVTKLKGPKAAALFAKTHNL+PLQEVPMDRFTVDMKRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDAIIA+H Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVD LLDLIEAAFGEISSCHLPTGT Sbjct 2224 FKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE RLT SACAAFIGDDNI+HGV+SD+LMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDELMA 2343 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 RCA+W+NMEVKIIDAV+ +K PYFCGGFI+ D VT TACRV+DPLKRLFKLGKPL A D Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLAAGD 2403 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QDEDRRRAL+DEV +W RTGL ELE A+ SRYEV+G ++++MAT A F+KLR Sbjct 2404 EQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 601 GPVIHLYGGPR 611 GPV+ LYGGP+ Sbjct 2464 GPVVTLYGGPK 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 1864 to 2474 Score:1015 bits(2624), Expect:0.0, Method:Compositional matrix adjust., Identities:481/611(79%), Positives:540/611(88%), Gaps:0/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQ+SVRQ L L+ V+EEK YPPKLD +E+LLL K+Q S AN Sbjct 1864 YIFSSDTGPGHLQQRSVRQTVLPVNTLEEVQEEKCYPPKLDEVKEQLLLKKLQESASMAN 1923 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKAT+V RL G +LY ++ ++PTY YP PVYSP + R S+P+ Sbjct 1924 RSRYQSRKVENMKATIVQRLKGGCKLYLMSETPKVPTYRTTYPAPVYSPPINIRLSNPES 1983 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+AACNE+L+RNYPTVASYQITDEYDAYLDMVDGS+SCLDRATF P+KLR YPK H+YH Sbjct 1984 AVAACNEFLARNYPTVASYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHSYHA 2043 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK++AC+ EYW+E Sbjct 2044 PTIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEYWKE 2103 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A PIRITTEN+TTYVTKLKGPKAAALFAKTHNL+PLQEVPMDRFTVDMKRDVKVTPGT Sbjct 2104 FAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDAIIA+H Sbjct 2164 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAIIAAH 2223 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKSQDDSLALT LM+LEDLGVD LLDLIEAAFGEISSCHLPTGT Sbjct 2224 FKPGDAVLETDIASFDKSQDDSLALTALMLLEDLGVDHPLLDLIEAAFGEISSCHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LNITIASRVLE RLT SACAAFIGDDNI+HGV+SD+LMA Sbjct 2284 RFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTRSACAAFIGDDNIIHGVVSDELMA 2343 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 RCA+W+NMEVKIIDAV+ +K PYFCGGFI++D+V TACRV+DPLKRLFKLGKPL A D Sbjct 2344 ARCATWMNMEVKIIDAVVSQKAPYFCGGFILYDTVAGTACRVADPLKRLFKLGKPLAAGD 2403 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QD+DRRRAL+DEV +W RTGL ELE A+ SRYEV+G ++++MAT A F+KLR Sbjct 2404 EQDDDRRRALADEVVRWQRTGLTDELEKAVHSRYEVQGISVVVMSMATFASSRSNFEKLR 2463 Query 601 GPVIHLYGGPR 611 GPV+ LYGGP+ Sbjct 2464 GPVVTLYGGPK 2474 >RecName: Full=Polyprotein nsP1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Middelburg virus] Sequence ID: P03318.2 Length: 995 Range 1: 386 to 995 Score:994 bits(2569), Expect:0.0, Method:Compositional matrix adjust., Identities:472/616(77%), Positives:537/616(87%), Gaps:11/616(1%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQ+SVRQ L + V EE+++ PK D E+E+LLLL+MQM P+EAN Sbjct 386 YIFSSDTGPGHLQQRSVRQTRLADCVAEDVHEERVFAPKCDKEKERLLLLQMQMAPTEAN 445 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRY-----PRPVYSPTVIERF 115 KSRYQSRKVENMKA V+DRL GA+L+ PT RY P+P+YS +V Sbjct 446 KSRYQSRKVENMKAEVIDRLLGGAKLFV------TPTTDCRYVTHKHPKPMYSTSVAFYL 499 Query 116 SSPDVAIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKH 175 SS A+AACNE+LSRNYPTV SYQITDEYDAYLDMVDGS+SCLDRA FCP+KLR +PK Sbjct 500 SSAKTAVAACNEFLSRNYPTVTSYQITDEYDAYLDMVDGSESCLDRAAFCPSKLRSFPKK 559 Query 176 HAYHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSG 235 H+YH+ +RSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT+DSAVFNVECFK+YAC+ Sbjct 560 HSYHRAEIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKYACNN 619 Query 236 EYWEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVK 295 +YW+E+A++PIR+TTENIT+YVT+LKGPKAAALFAKT++L PLQEVPMDRF VDMKRDVK Sbjct 620 DYWDEFAQKPIRLTTENITSYVTRLKGPKAAALFAKTYDLKPLQEVPMDRFVVDMKRDVK 679 Query 296 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDA 355 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PNVHTLFDMSAEDFDA Sbjct 680 VTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDA 739 Query 356 IIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCH 415 II+ HF PGD VLETDIASFDKSQDDSLA TGLM+LEDLGVDQ LL+LIEA+FGEI+S H Sbjct 740 IISEHFRPGDAVLETDIASFDKSQDDSLAYTGLMLLEDLGVDQPLLELIEASFGEITSTH 799 Query 416 LPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVIS 475 LPTGTRFKFGAMMKSGMFLTLF+NT+LN+TIASRVLE+RLT+S CAAFIGDDNIVHGV S Sbjct 800 LPTGTRFKFGAMMKSGMFLTLFVNTMLNMTIASRVLEERLTNSKCAAFIGDDNIVHGVKS 859 Query 476 DKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKP 535 DKL+AERCA+W+NMEVKIIDAVM E+PPYFCGGFIVFD VT T CRV+DPLKRLFKLGKP Sbjct 860 DKLLAERCAAWMNMEVKIIDAVMCERPPYFCGGFIVFDQVTGTCCRVADPLKRLFKLGKP 919 Query 536 LTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKA 595 L AEDKQDEDRRRAL+DE +W R G+ A+LE A+ SRYEVEG ++++ A+ TL+R+ Sbjct 920 LPAEDKQDEDRRRALADEAQRWNRVGIQADLEAAMNSRYEVEGIRNVITALTTLSRNYHN 979 Query 596 FKKLRGPVIHLYGGPR 611 F+ LRGPVI LYGGP+ Sbjct 980 FRHLRGPVIDLYGGPK 995 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 1906 to 2515 Score:952 bits(2461), Expect:0.0, Method:Compositional matrix adjust., Identities:452/611(74%), Positives:510/611(83%), Gaps:1/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFS+DTG GHLQ KSV Q+ L L+ E++Y P LDT +E+ L L+ QM P+EAN Sbjct 1906 YIFSTDTGPGHLQMKSVLQNQLTEPTLERNVLERIYAPVLDTSKEEQLKLRYQMMPTEAN 1965 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVEN KA +RL SG RLY A + Y + YP+P YS +V +S P Sbjct 1966 KSRYQSRKVENQKAITTERLLSGLRLYNSA-TDQPECYKITYPKPSYSSSVAANYSDPKF 2024 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CN YL NYPTVASYQITDEYDAYLDMVDG+ +CLD ATFCPAKLR YPK H Y Sbjct 2025 AVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKRHEYRA 2084 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPS QNTLQNVL AATKRNCNVTQMRELPT+DSA FNVECF++YAC+ EYWEE Sbjct 2085 PNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEE 2144 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A++PIRITTE +T YV +LKGPKAAALFAKTHNLVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2145 FARKPIRITTEFVTAYVARLKGPKAAALFAKTHNLVPLQEVPMDRFVMDMKRDVKVTPGT 2204 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA H Sbjct 2205 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEH 2264 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F GDPVLETDIASFDKSQDD++ALTGLMILEDLGVDQ LLDLIE AFGEISS HLPTGT Sbjct 2265 FKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGT 2324 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NTVLN+ IASRVLE+RL S CAAFIGDDNI+HGV+SDK MA Sbjct 2325 RFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSKCAAFIGDDNIIHGVVSDKEMA 2384 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCA+W+NMEVKIIDAV+GE+PPYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL A+D Sbjct 2385 ERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADD 2444 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QDEDRRRAL DE WFR G+ L VA+ +RYEV+ +L+A+ T A+ +AF+ +R Sbjct 2445 EQDEDRRRALLDETKAWFRVGITDTLAVAVATRYEVDNITPVLLALRTFAQSKRAFQAIR 2504 Query 601 GPVIHLYGGPR 611 G + HLYGGP+ Sbjct 2505 GEIKHLYGGPK 2515 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 1904 to 2513 Score:951 bits(2458), Expect:0.0, Method:Compositional matrix adjust., Identities:451/611(74%), Positives:513/611(83%), Gaps:1/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFS+DTG GHLQ+KSV Q+ L L+ E+++ P LDT +E+ L L+ QM P+EAN Sbjct 1904 YIFSTDTGPGHLQKKSVLQNQLTEPTLERNVLERIHAPVLDTSKEEQLKLRYQMMPTEAN 1963 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVEN KA +RL SG RLY A + Y + YP+P+YS +V +S P Sbjct 1964 KSRYQSRKVENQKAITTERLLSGLRLYNSA-TDQPECYKITYPKPLYSSSVPANYSDPQF 2022 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CN YL NYPTVASYQITDEYDAYLDMVDG+ +CLD ATFCPAKLR YPK H Y Sbjct 2023 AVAVCNNYLHENYPTVASYQITDEYDAYLDMVDGTVACLDTATFCPAKLRSYPKKHEYRA 2082 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPS QNTLQNVL AATKRNCNVTQMRELPT+DSA FNVECF++YAC+ EYWEE Sbjct 2083 PNIRSAVPSAMQNTLQNVLIAATKRNCNVTQMRELPTLDSATFNVECFRKYACNDEYWEE 2142 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 +A++PIRITTE +T YV +LKGPKAAALFAKT+NLVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2143 FARKPIRITTEFVTAYVARLKGPKAAALFAKTYNLVPLQEVPMDRFVMDMKRDVKVTPGT 2202 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA H Sbjct 2203 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAEH 2262 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F GDPVLETDIASFDKSQDD++ALTGLMILEDLGVDQ LLDLIE AFGEISS HLPTGT Sbjct 2263 FKQGDPVLETDIASFDKSQDDAMALTGLMILEDLGVDQPLLDLIECAFGEISSTHLPTGT 2322 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NTVLN+ IASRVLE+RL S CAAFIGDDNI+HGV+SDK MA Sbjct 2323 RFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEERLKTSRCAAFIGDDNIIHGVVSDKEMA 2382 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCA+W+NMEVKIIDAV+GE+PPYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL A+D Sbjct 2383 ERCATWLNMEVKIIDAVIGERPPYFCGGFILQDSVTSTACRVADPLKRLFKLGKPLPADD 2442 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QDEDRRRAL DE WFR G+ L VA+T+RYEV+ +L+A+ T A+ +AF+ +R Sbjct 2443 EQDEDRRRALLDETKAWFRVGITGTLAVAVTTRYEVDNITPVLLALRTFAQSKRAFQAIR 2502 Query 601 GPVIHLYGGPR 611 G + HLYGGP+ Sbjct 2503 GEIKHLYGGPK 2513 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 1890 to 2499 Score:926 bits(2394), Expect:0.0, Method:Compositional matrix adjust., Identities:443/611(73%), Positives:508/611(83%), Gaps:1/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSV Q++ ++ EK++ P LD ++E++L + QM P+ AN Sbjct 1890 YIFSSDTGPGHLQQKSVIQNSTTEILIERSRLEKIHAPVLDLQKEEMLKCRYQMSPTVAN 1949 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKA RL G ++Y DV Y YP+P+YS +V +RF SP+V Sbjct 1950 KSRYQSRKVENMKAVTTGRLLDGLKMYVTPDV-EAECYKYTYPKPMYSASVPDRFVSPEV 2008 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+A CN + NYPTVASYQITDEYDAYLDMV+GS SCLD ATFCPAKLR +PK H+Y + Sbjct 2009 AVAVCNNFFHENYPTVASYQITDEYDAYLDMVEGSVSCLDTATFCPAKLRSFPKTHSYLE 2068 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPS FQNTLQNVL+AATKRNCNVTQMRELP +DSAVFNVECFK+YAC+ +YWEE Sbjct 2069 PTLRSAVPSAFQNTLQNVLSAATKRNCNVTQMRELPVLDSAVFNVECFKKYACNTDYWEE 2128 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + ++PIRITTE +T+YV +LKGP+AAALFAKTH LVPLQEVPMDRF +DMKRDVKVTPGT Sbjct 2129 FKEKPIRITTECVTSYVARLKGPEAAALFAKTHQLVPLQEVPMDRFVMDMKRDVKVTPGT 2188 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRL AVL PN+HTLFDMSAEDFDAIIA++ Sbjct 2189 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLTAVLLPNIHTLFDMSAEDFDAIIAAN 2248 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PVLETDI SFDKSQDDSLALT LMILEDLGVD L+DLIE AFGEI+S HLPT T Sbjct 2249 FSYVHPVLETDIGSFDKSQDDSLALTALMILEDLGVDDRLMDLIECAFGEITSVHLPTAT 2308 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 FKFGAMMKSGMFLTLF+NTVLN+ IASRVLEQRL DS CAAFIGDDNI+HGV+SDK+MA Sbjct 2309 TFKFGAMMKSGMFLTLFVNTVLNVVIASRVLEQRLRDSKCAAFIGDDNIIHGVVSDKIMA 2368 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKIIDAV+G K PYFCGGFI+ D VT TACRVSDPLKRLFKLGKPL +D Sbjct 2369 DRCATWMNMEVKIIDAVIGIKAPYFCGGFILEDQVTHTACRVSDPLKRLFKLGKPLPVDD 2428 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 +QD DRRRAL DE WFR G+ EL A+ SRYEV+ + +L+A+AT +R KAFK LR Sbjct 2429 EQDHDRRRALEDETRAWFRVGIQGELLKAVESRYEVQEVQPVLLALATFSRSDKAFKALR 2488 Query 601 GPVIHLYGGPR 611 G HLYGGP+ Sbjct 2489 GSPRHLYGGPK 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 1860 to 2467 Score:923 bits(2385), Expect:0.0, Method:Compositional matrix adjust., Identities:441/608(73%), Positives:501/608(82%), Gaps:0/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSS+TG GHLQQKSVRQ LQ LD EK Y P+LD EREK+L K+Q+ SE N Sbjct 1860 YIFSSETGQGHLQQKSVRQCKLQEPILDRAVHEKYYAPRLDLEREKMLQKKLQLCASEGN 1919 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKA +RL SG Y ++V + Y V YP P+YS TVI RF+S +V Sbjct 1920 RSRYQSRKVENMKAITAERLISGLGTYLSSEVNPVECYRVNYPVPIYSSTVINRFTSAEV 1979 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ CN + NYPTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR YPK H+Y Q Sbjct 1980 AVKTCNLVIQENYPTVASYCITDEYDAYLDMVDGASCCLDTATFCPAKLRSYPKKHSYLQ 2039 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP +DSA FNV+CFK+YAC+ EYW+ Sbjct 2040 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVDCFKKYACNDEYWDT 2099 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIR+TTEN+T YVTKLKGPKAAALFA THNL PLQE+PMD+F +D+KRDVKVTPGT Sbjct 2100 FRDNPIRLTTENVTQYVTKLKGPKAAALFANTHNLKPLQEIPMDQFVMDLKRDVKVTPGT 2159 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2160 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2219 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 FH GDPVLETDIASFDKS+DD++A++ LMILEDLGVDQ LLDLIEAAFG I+S HLPTGT Sbjct 2220 FHHGDPVLETDIASFDKSEDDAIAISALMILEDLGVDQPLLDLIEAAFGNITSVHLPTGT 2279 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT++NI IASRVL +RLT SACAA IGDDNIVHGV+SD LMA Sbjct 2280 RFKFGAMMKSGMFLTLFVNTLVNIMIASRVLRERLTTSACAASIGDDNIVHGVVSDTLMA 2339 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCA+W+NMEVKIIDAV+G K PYFCGGFI+ D +T TACRV+DPLKRLFKLGKPL +D Sbjct 2340 ERCATWLNMEVKIIDAVIGIKAPYFCGGFILVDQITGTACRVADPLKRLFKLGKPLPVDD 2399 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QD DRRRAL DE +W R G+ EL A+ SRYE+ I+ +++TLA +K FK +R Sbjct 2400 TQDCDRRRALHDEAMRWNRIGITDELVKAVESRYEIILAGLIITSLSTLAESVKNFKSIR 2459 Query 601 GPVIHLYG 608 G I LYG Sbjct 2460 GSPITLYG 2467 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 1802 to 2411 Score:891 bits(2303), Expect:0.0, Method:Compositional matrix adjust., Identities:425/611(70%), Positives:495/611(81%), Gaps:1/611(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQ+SV Q+ + + EK++ PKLD +E +L K QM PSEAN Sbjct 1802 YIFSSDTGPGHLQQRSVLQNCTAECIYEPAKLEKIHAPKLDKTKEDILRSKYQMKPSEAN 1861 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 KSRYQSRKVENMKA +V RL G Y G + + Y + YP P+YS + + SS Sbjct 1862 KSRYQSRKVENMKAEIVGRLLDGLGEYLGTE-HPVECYRITYPVPIYSTSDLRGLSSAKT 1920 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ ACN +L N+P+V SY+ITDEYDAYLDMVDGS+SCLDR++F P++LR +PK H+Y Sbjct 1921 AVRACNAFLEANFPSVTSYKITDEYDAYLDMVDGSESCLDRSSFSPSRLRSFPKTHSYLD 1980 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P + SAVPSPFQNTLQNVLAAATKRNCNVTQMRELPT DSAV NVE F++YAC + W+E Sbjct 1981 PQINSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTYDSAVLNVEAFRKYACKPDVWDE 2040 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 Y PI ITTEN+TTYV KLKGPKAAALFAKTHNL+PL +VPMD+FTVDMKRDVKVTPGT Sbjct 2041 YRDNPICITTENVTTYVAKLKGPKAAALFAKTHNLIPLHQVPMDKFTVDMKRDVKVTPGT 2100 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLN L PN+HTLFDMSAEDFDAIIA H Sbjct 2101 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNNALFPNIHTLFDMSAEDFDAIIAEH 2160 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F GD VLETDIASFDKSQDDS+ALT LMILEDLGVDQ L++LIEAAFGEI S HLPTGT Sbjct 2161 FKHGDHVLETDIASFDKSQDDSMALTALMILEDLGVDQNLMNLIEAAFGEIVSTHLPTGT 2220 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLF+NT+LN+ IA RVLE +L S AFIGDDNI+HG+ISDKLMA Sbjct 2221 RFKFGAMMKSGMFLTLFVNTILNVVIACRVLEDQLAQSPWPAFIGDDNIIHGIISDKLMA 2280 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKI+D+++G +PPYFCGGFIV D VT TACRV+DPLKRLFKLGKPL +D Sbjct 2281 DRCATWMNMEVKILDSIVGIRPPYFCGGFIVCDDVTGTACRVADPLKRLFKLGKPLPLDD 2340 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QDEDRRRAL DEV W R GL + A+ RY V + +L+A+ TL++++K+F+ +R Sbjct 2341 GQDEDRRRALHDEVKTWSRVGLRHRVCEAIEDRYAVHSSELVLLALTTLSKNLKSFRNIR 2400 Query 601 GPVIHLYGGPR 611 G IHLYGGP+ Sbjct 2401 GKPIHLYGGPK 2411 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 1864 to 2471 Score:889 bits(2296), Expect:0.0, Method:Compositional matrix adjust., Identities:438/608(72%), Positives:492/608(80%), Gaps:0/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSS+TG GHLQQKS RQ LQ L+ EK Y P+LD EREKLL K+Q+ SE N Sbjct 1864 YIFSSETGQGHLQQKSTRQCKLQHPILERSVHEKFYAPRLDLEREKLLQRKLQLCASEGN 1923 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKA +RL G Y A+ + Y + YP PVYS T RFSS DV Sbjct 1924 RSRYQSRKVENMKAITAERLLQGIGAYLSAEPQPVECYKINYPVPVYSTTRSNRFSSADV 1983 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ CN + N+PTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR +PK H+Y + Sbjct 1984 AVRVCNLVMQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLK 2043 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 2044 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWET 2103 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIR+TTEN+T YVTKLKGPKAAALFAKTHNL PL E+PMDRF +D+KRDVKVTPGT Sbjct 2104 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2163 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2164 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2223 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F GD VLETDIASFDKS+DD++A++ LMILEDLGVDQ LLDLIEAAFG I+S HLPTGT Sbjct 2224 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2283 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINTV+NI IASRVL +RLT+S CAAFIGDDNIV GV SD LMA Sbjct 2284 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2343 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCA+W+NMEVKIIDAV+G K PYFCGGFIV D +T TACRV+DPLKRLFKLGKPL +D Sbjct 2344 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2403 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QD DRRRAL DE +W R G+ EL A+ SRY+V ++ A++TLA + FK +R Sbjct 2404 DQDGDRRRALYDEALRWNRIGITDELVKAVESRYDVLYISLVITALSTLAATVSNFKHIR 2463 Query 601 GPVIHLYG 608 G I LYG Sbjct 2464 GNPITLYG 2471 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 1867 to 2474 Score:887 bits(2293), Expect:0.0, Method:Compositional matrix adjust., Identities:440/608(72%), Positives:490/608(80%), Gaps:0/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSS+TG GHLQQKS RQ LQ L+ EK Y P+LD EREKLL K+Q+ SE N Sbjct 1867 YIFSSETGQGHLQQKSTRQCKLQNPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1926 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKA +RL G Y A+ + Y V YP P+YS T RFSS DV Sbjct 1927 RSRYQSRKVENMKAITAERLLQGIGAYLSAESQPVECYKVNYPVPIYSTTRSNRFSSADV 1986 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ CN L N+PTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR +PK H+Y + Sbjct 1987 AVRVCNLVLQENFPTVASYTITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2046 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYW+ Sbjct 2047 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDT 2106 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + PIR+TTEN+T YVTKLKGPKAAALFAKTHNL PL E+PMDRF +D+KRDVKVTPGT Sbjct 2107 FKNNPIRLTTENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2166 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2167 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2226 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F GD VLETDIASFDKS+DD++A++ LMILEDLGVDQ LLDLIEAAFG I+S HLPTGT Sbjct 2227 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLDLIEAAFGNITSVHLPTGT 2286 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINTV+NI IASRVL +RLT+S CAAFIGDDNIV GV SD LMA Sbjct 2287 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTNSPCAAFIGDDNIVKGVKSDALMA 2346 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCA+W+NMEVKIIDA +G K PYFCGGFIV D VT TACRV+DPLKRLFKLGKPL +D Sbjct 2347 ERCATWLNMEVKIIDATVGVKAPYFCGGFIVVDQVTGTACRVADPLKRLFKLGKPLPLDD 2406 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QD DRRRAL DE +W R G+ EL A+ SRYEV ++ A+ TLA + FK +R Sbjct 2407 DQDGDRRRALYDEALRWNRIGITDELIKAVESRYEVFYISLVITALTTLAATVSNFKYIR 2466 Query 601 GPVIHLYG 608 G I LYG Sbjct 2467 GNPITLYG 2474 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 1887 to 2494 Score:876 bits(2264), Expect:0.0, Method:Compositional matrix adjust., Identities:438/608(72%), Positives:490/608(80%), Gaps:0/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSS+TG GHLQQKS RQ LQ L+ EK Y P+LD EREKLL K+Q+ SE N Sbjct 1887 YIFSSETGQGHLQQKSTRQCKLQYPILERSVHEKFYAPRLDLEREKLLQKKLQLCASEGN 1946 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKA V+RL G Y A+ + Y V YP P+YS T FSS +V Sbjct 1947 RSRYQSRKVENMKAITVERLLQGIGSYLSAEPQPVECYKVTYPAPMYSSTASNSFSSAEV 2006 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ CN L N+PTVASY ITDEYDAYLDMVDG+ CLD ATFCPAKLR +PK H+Y + Sbjct 2007 AVKVCNLVLQENFPTVASYNITDEYDAYLDMVDGASCCLDTATFCPAKLRSFPKKHSYLR 2066 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 P +RSAVPSP QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYW+ Sbjct 2067 PEIRSAVPSPIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNDEYWDF 2126 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 Y PIR+T EN+T YVTKLKGPKAAALFAKTHNL PL E+PMDRF +D+KRDVKVTPGT Sbjct 2127 YKTNPIRLTAENVTQYVTKLKGPKAAALFAKTHNLQPLHEIPMDRFVMDLKRDVKVTPGT 2186 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2187 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2246 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F GD VLETDIASFDKS+DD++A++ LMILEDLGVDQ LL+LIEAAFG I+S HLPTGT Sbjct 2247 FQFGDAVLETDIASFDKSEDDAIAMSALMILEDLGVDQALLNLIEAAFGNITSVHLPTGT 2306 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 RFKFGAMMKSGMFLTLFINTV+NI IASRVL +RLT S CAAFIGDDNIV GV SD LMA Sbjct 2307 RFKFGAMMKSGMFLTLFINTVVNIMIASRVLRERLTTSPCAAFIGDDNIVKGVTSDALMA 2366 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 ERCA+W+NMEVKIIDAV+G K PYFCGGFIV D +T TACRV+DPLKRLFKLGKPL +D Sbjct 2367 ERCATWLNMEVKIIDAVVGVKAPYFCGGFIVVDQITGTACRVADPLKRLFKLGKPLPLDD 2426 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 QD DRRRAL DE ++W R G+ EL A+ SRYEV I+ A+ TLA + FK +R Sbjct 2427 DQDVDRRRALHDEAARWNRIGITEELVKAVESRYEVNYVSLIITALTTLASSVSNFKHIR 2486 Query 601 GPVIHLYG 608 G I LYG Sbjct 2487 GHPITLYG 2494 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 1887 to 2493 Score:876 bits(2264), Expect:0.0, Method:Compositional matrix adjust., Identities:434/608(71%), Positives:498/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L L+ E E Y P+LD E+E+LL K+Q++P+ AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSRKVENMKA R+ G Y A+ G++ Y +P P+YS +V FSSP V Sbjct 1947 RSRYQSRKVENMKAITARRILQGLGHYLKAE-GKVECYRTLHPVPLYSSSVNRAFSSPKV 2005 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK H+Y + Sbjct 2006 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2065 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 2066 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2125 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + + PIR+T EN+ Y+TKLKGPKAAALFAKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2126 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2185 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2186 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2245 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKS+DD++ALT LMILEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2246 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2305 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 +FKFGAMMKSGMFLTLF+NTV+NI IASRVL +RLT S CAAFIGDDNIV GV SDKLMA Sbjct 2306 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2365 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKIIDAV+GEK PYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL A+D Sbjct 2366 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADD 2425 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 + D+DRRRAL +E ++W R G+ +EL A+ SRYE G I++AM TLA +K+F LR Sbjct 2426 EHDDDRRRALHEESTRWNRVGILSELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2485 Query 601 GPVIHLYG 608 G I LYG Sbjct 2486 GAPITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 1893 to 2499 Score:874 bits(2257), Expect:0.0, Method:Compositional matrix adjust., Identities:428/608(70%), Positives:497/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L L+ E E Y P+LD +E++L K+Q++P++AN Sbjct 1893 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1952 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSR+VENMKA R+ G Y ++ G++ Y +P P+YS +V FSSP V Sbjct 1953 RSRYQSRRVENMKAITTKRILQGLGHYLKSE-GKVECYRTLHPVPLYSASVNRAFSSPKV 2011 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 2012 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 2071 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 2072 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2131 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 Y K PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2132 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 2191 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2192 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2251 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKS+DD++ALT LMILEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2252 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 2311 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 +F+FGAMMKSGMFLTLF+NTV+N+ IASRVL +RLT+S CAAFIGDDNIV GV SDKLMA Sbjct 2312 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 2371 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKIIDAV+GEK PYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL +D Sbjct 2372 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2431 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 + D+DRRRAL +E ++W R G+ +EL A+ SRYE G I++AM TLA + +F LR Sbjct 2432 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVGSFGYLR 2491 Query 601 GPVIHLYG 608 G I LYG Sbjct 2492 GAPISLYG 2499 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 1879 to 2485 Score:874 bits(2257), Expect:0.0, Method:Compositional matrix adjust., Identities:433/608(71%), Positives:497/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L L+ E E Y P+LD E+E+LL K+Q++P+ AN Sbjct 1879 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1938 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSR+VENMKA R+ G Y A+ G++ Y +P P+YS +V FSSP V Sbjct 1939 RSRYQSRRVENMKAITARRILQGLGHYLKAE-GKVECYRTLHPVPLYSSSVNRAFSSPKV 1997 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK H+Y + Sbjct 1998 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2057 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 2058 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2117 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + + PIR+T EN+ Y+TKLKGPKAAALFAKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2118 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2177 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2178 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2237 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKS+DD++ALT LMILEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2238 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2297 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 +FKFGAMMKSGMFLTLF+NTV+NI IASRVL +RLT S CAAFIGDDNIV GV SDKLMA Sbjct 2298 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2357 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKIIDAV+GEK PYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL A+D Sbjct 2358 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAADD 2417 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 + D+DRRRAL +E ++W R G+ EL A+ SRYE G I++AM TLA +K+F LR Sbjct 2418 EHDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2477 Query 601 GPVIHLYG 608 G I LYG Sbjct 2478 GAPITLYG 2485 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain CPA201)] Sequence ID: Q8V294.3 Length: 2497 Range 1: 1891 to 2497 Score:873 bits(2256), Expect:0.0, Method:Compositional matrix adjust., Identities:428/608(70%), Positives:498/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L L+ E E Y P+LD +E++L K+Q++P++AN Sbjct 1891 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDLNKEEILRKKLQLNPTQAN 1950 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSR+VENMKA R+ G Y ++ G++ Y +P P+YS +V FSSP V Sbjct 1951 RSRYQSRRVENMKAITTKRILQGLGHYLKSE-GKVECYRTLHPVPLYSASVNRAFSSPKV 2009 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK HAY + Sbjct 2010 AVEACNVVLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHAYLE 2069 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 2070 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2129 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 Y K PIR+T EN+ Y+TKLKGPKAAAL+AKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2130 YKKNPIRLTEENVVNYITKLKGPKAAALYAKTHNLDMLQDIPMDRFIMDLKRDVKVTPGT 2189 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATAYLCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2190 KHTEERPKVQVIQAADPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2249 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKS+DD++ALT LMILEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2250 FQPGDWVLETDIASFDKSEDDAMALTALMILEDLGVDPELLTLIEAAFGEISSIHLPTKT 2309 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 +F+FGAMMKSGMFLTLF+NTV+N+ IASRVL +RLT+S CAAFIGDDNIV GV SDKLMA Sbjct 2310 KFRFGAMMKSGMFLTLFVNTVINMVIASRVLRERLTNSPCAAFIGDDNIVKGVKSDKLMA 2369 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKIIDAV+GEK PYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL +D Sbjct 2370 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2429 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 + D+DRRRAL +E ++W R G+ +EL A+ SRYE G I++AM TLA +++F LR Sbjct 2430 EHDDDRRRALQEESARWNRVGIFSELCKAVESRYETVGTAVIIMAMTTLASSVESFSCLR 2489 Query 601 GPVIHLYG 608 G I LYG Sbjct 2490 GAPIALYG 2497 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 1887 to 2493 Score:873 bits(2255), Expect:0.0, Method:Compositional matrix adjust., Identities:431/608(71%), Positives:495/608(81%), Gaps:1/608(0%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSEAN 60 YIFSSDTG GHLQQKSVRQ L L+ E E Y P+LD E+E+LL K+Q++P+ AN Sbjct 1887 YIFSSDTGQGHLQQKSVRQTVLSEVVLERTELEISYAPRLDQEKEELLRKKLQLNPTPAN 1946 Query 61 KSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSPDV 120 +SRYQSR+VENMKA R+ G Y A+ G++ Y +P P+YS +V FSSP V Sbjct 1947 RSRYQSRRVENMKAITARRILQGLGHYLKAE-GKVECYRTLHPVPLYSSSVNRAFSSPKV 2005 Query 121 AIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAYHQ 180 A+ ACN L N+PTVASY I EYDAYLDMVDG+ CLD A+FCPAKLR +PK H+Y + Sbjct 2006 AVEACNAMLKENFPTVASYCIIPEYDAYLDMVDGASCCLDTASFCPAKLRSFPKKHSYLE 2065 Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEE 240 PT+RSAVPS QNTLQNVLAAATKRNCNVTQMRELP +DSA FNVECFK+YAC+ EYWE Sbjct 2066 PTIRSAVPSAIQNTLQNVLAAATKRNCNVTQMRELPVLDSAAFNVECFKKYACNNEYWET 2125 Query 241 YAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGT 300 + + PIR+T EN+ Y+TKLKGPKAAALFAKTHNL LQ++PMDRF +D+KRDVKVTPGT Sbjct 2126 FKENPIRLTEENVVNYITKLKGPKAAALFAKTHNLNMLQDIPMDRFVMDLKRDVKVTPGT 2185 Query 301 KHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASH 360 KHTEERPKVQVIQAA+PLATA LCGIHRELVRRLNAVL PN+HTLFDMSAEDFDAIIA H Sbjct 2186 KHTEERPKVQVIQAADPLATADLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEH 2245 Query 361 FHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGT 420 F PGD VLETDIASFDKS+DD++ALT LMILEDLGVD LL LIEAAFGEISS HLPT T Sbjct 2246 FQPGDCVLETDIASFDKSEDDAMALTALMILEDLGVDAELLTLIEAAFGEISSIHLPTKT 2305 Query 421 RFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMA 480 +FKFGAMMKSGMFLTLF+NTV+NI IASRVL +RLT S CAAFIGDDNIV GV SDKLMA Sbjct 2306 KFKFGAMMKSGMFLTLFVNTVINIVIASRVLRERLTGSPCAAFIGDDNIVKGVKSDKLMA 2365 Query 481 ERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAED 540 +RCA+W+NMEVKIIDAV+GEK PYFCGGFI+ DSVT TACRV+DPLKRLFKLGKPL +D Sbjct 2366 DRCATWLNMEVKIIDAVVGEKAPYFCGGFILCDSVTGTACRVADPLKRLFKLGKPLAVDD 2425 Query 541 KQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAFKKLR 600 + D+DRRRAL +E ++W R G+ EL A+ SRYE G I++AM TLA +K+F LR Sbjct 2426 EHDDDRRRALHEESTRWNRVGILPELCKAVESRYETVGTSIIVMAMTTLASSVKSFSYLR 2485 Query 601 GPVIHLYG 608 G I LYG Sbjct 2486 GAPITLYG 2493 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 1985 to 2592 Score:684 bits(1766), Expect:0.0, Method:Compositional matrix adjust., Identities:339/614(55%), Positives:435/614(70%), Gaps:13/614(2%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQCAQLDAVEEEKMYPPKLDTEREKLLL-----LKMQMH 55 YIFSSD G+ HL Q HN Q V P D LL L QM Sbjct 1985 YIFSSDQGTAHLSQ-----HNTQTNNTTEVLMRTSVLPSNDHGTPDLLAEMKKRLAYQMR 2039 Query 56 PSEANKSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERF 115 P++ NKSRY S KV NMK +V L GA Y + +P + +P+P YS + +F Sbjct 2040 PTQKNKSRYLSAKVHNMKHKIVQCLQRGAGHYL-REQHALPLWKNTFPKPRYSDACVVKF 2098 Query 116 SSPDVAIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKH 175 S + AI A N ++ NYPT++S+ +TD+YDAYLDMVDG + LD TF PAK+R PK Sbjct 2099 ESVNTAIVAANMFIGCNYPTLSSFGVTDKYDAYLDMVDGLNCNLDTVTFEPAKVRSLPKK 2158 Query 176 HAYHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSG 235 Y+QP ++S VP P +TLQ++L AATKRNCNVTQMRELPTMDSA NVE FK++AC Sbjct 2159 SKYNQPLIQSQVPGPMASTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKKFACKD 2218 Query 236 -EYWEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVP-LQEVPMDRFTVDMKRD 293 + W E+A++P+R++ I YV L+G KA + ++ P L EV MDRFT+DMKRD Sbjct 2219 TDLWTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAACPDLSEVAMDRFTLDMKRD 2278 Query 294 VKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDF 353 VKVTPGTKH EERPKVQVIQAA+P+ATAYLC IHRELVRRL AVL+P++H LFDMS+EDF Sbjct 2279 VKVTPGTKHVEERPKVQVIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDF 2338 Query 354 DAIIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISS 413 DAI+ GD VLETDI+SFDKSQD ++A+T LM+LEDLGV++ LL LIEA+FG+I+S Sbjct 2339 DAIVGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLEDLGVEEDLLTLIEASFGDITS 2398 Query 414 CHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGV 473 HLPTGTRF+FG+MMKSG+FLTLF+NT+LNITIA+RVL ++L D+ CAAFIGDDN++ GV Sbjct 2399 VHLPTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGV 2458 Query 474 ISDKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLG 533 +SD +M RCASW+NMEVKI++ +G++ PYFCGGF++ D+VT T RVSDP+KRL K+G Sbjct 2459 VSDDMMVARCASWLNMEVKIMEMEIGDRSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMG 2518 Query 534 KPLTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDI 593 KP + + D DR RAL +EV W+R G+ L+VA +RY V +AMATLA+D+ Sbjct 2519 KPALNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDL 2578 Query 594 KAFKKLRGPVIHLY 607 +++ RG + LY Sbjct 2579 RSYLGARGEYVSLY 2592 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 1993 to 2600 Score:681 bits(1756), Expect:0.0, Method:Compositional matrix adjust., Identities:336/611(55%), Positives:433/611(70%), Gaps:7/611(1%) Query 1 YIFSSDTGSGHLQQKSVRQHNLQ--CAQLDAVEEEKMYPPKLDTEREKLLLLKMQMHPSE 58 YIFSSD G+ HL Q + + +N + + P L E K L QM P++ Sbjct 1993 YIFSSDQGTAHLSQHNTQTNNTTEVLMRTSVLPSNDHGTPDLPAETRKRL--AYQMRPTQ 2050 Query 59 ANKSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYPRPVYSPTVIERFSSP 118 NKSRY S KV NMK +V L GA Y + +P + +P+P YS + +F S Sbjct 2051 KNKSRYLSAKVHNMKHKIVRCLQRGAGHYL-REQHALPLWKNTFPKPRYSDACVVKFESV 2109 Query 119 DVAIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKLRCYPKHHAY 178 + AI A N ++ NYPT++S+ ITD+YDAYLDMVDG + LD TF PAK+R PK Y Sbjct 2110 NTAIVAANMFIGCNYPTLSSFGITDKYDAYLDMVDGLNCNLDTVTFDPAKVRSLPKKSEY 2169 Query 179 HQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSG-EY 237 +QP ++S VP P +TLQ++L AATKRNCNVTQMRELPTMDSA NVE FK +AC + Sbjct 2170 NQPLIQSQVPGPMTSTLQSILMAATKRNCNVTQMRELPTMDSAAMNVEAFKSFACKDTDL 2229 Query 238 WEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVP-LQEVPMDRFTVDMKRDVKV 296 W E+A++P+R++ I YV L+G KA + ++ + P L EV MDRFT+DMKRDVKV Sbjct 2230 WTEFAEKPVRLSPGQIEEYVFHLQGAKANVMHSRVEAVCPDLSEVAMDRFTLDMKRDVKV 2289 Query 297 TPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAI 356 TPGTKH EERPKVQ IQAA+P+ATAYLC IHRELVRRL AVL+P++H LFDMS+EDFDAI Sbjct 2290 TPGTKHVEERPKVQEIQAADPMATAYLCAIHRELVRRLKAVLKPSIHVLFDMSSEDFDAI 2349 Query 357 IASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHL 416 + GD VLETDI+SFDKSQD ++A+T LM+L DLGV++ LL LIEA+FG+I+S HL Sbjct 2350 VGHGMKLGDKVLETDISSFDKSQDQAMAVTALMLLRDLGVEEDLLTLIEASFGDITSAHL 2409 Query 417 PTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISD 476 PTGTRF+FG+MMKSG+FLTLF+NT+LNITIA+RVL ++L D+ CAAFIGDDN++ GV+SD Sbjct 2410 PTGTRFQFGSMMKSGLFLTLFVNTLLNITIAARVLREQLADTRCAAFIGDDNVITGVVSD 2469 Query 477 KLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPL 536 +M RCASW+NMEVKI+D +G PYFCGGF++ D+VT T RVSDP+KRL K+GKP Sbjct 2470 DMMVARCASWLNMEVKIMDMEIGNMSPYFCGGFLLLDTVTGTVSRVSDPVKRLMKMGKPA 2529 Query 537 TAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSILIAMATLARDIKAF 596 + + D DR RAL +EV W+R G+ L+VA +RY V +AMATLA+D++++ Sbjct 2530 LNDPETDVDRCRALREEVESWYRVGIQWPLQVAAATRYGVNHLPLATMAMATLAQDLRSY 2589 Query 597 KKLRGPVIHLY 607 RG + LY Sbjct 2590 LGARGEYVSLY 2600 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 1182 to 1594 Score:74.7 bits(182), Expect:1e-12, Method:Compositional matrix adjust., Identities:100/437(23%), Positives:174/437(39%), Gaps:39/437(8%) Query 178 YHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMR-ELPTMDSAVFNVECFKRYACSGE 236 + +P +R+A P L L A KRN N + + D+A VE + Sbjct 1182 FMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVE---------K 1232 Query 237 YWEEYAKQP------IRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDM 290 +W+ Y + + +T E+ + +++K + L N V L V D + + Sbjct 1233 FWDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQL--ADFNFVDLPAV--DEYKHMI 1288 Query 291 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSA 350 K K +E P +Q I A + EL R L + + + Sbjct 1289 KSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLETIDTSKFLFYTRKT 1348 Query 351 ----EDFDAIIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEA 406 E+F + + S +LE DI+ +DKSQ++ I E LG+D +L ++ Sbjct 1349 PTQIEEFFSDLDSS--QAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDDWLAEVWRQ 1406 Query 407 AFGEISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGD 466 + + G + KSG T NT++ S ++ + AAF GD Sbjct 1407 GHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCGD 1464 Query 467 DNIVH---GVISDKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVS 523 D++++ G+ + A +W N E K+ G YFCG +++ + A Sbjct 1465 DSLIYIPKGLDLPDIQAGANLTW-NFEAKLFRKKYG----YFCGRYVIHHD--RGAIVYY 1517 Query 524 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVE-GCKSI 582 DPLK + KLG ++ E+ RR+L D S ++L+ A+ ++ G + Sbjct 1518 DPLKLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFV 1577 Query 583 LIAMATLARDIKAFKKL 599 ++ D + FK L Sbjct 1578 YCSIIKYLSDKRLFKDL 1594 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 1186 to 1568 Score:71.2 bits(173), Expect:1e-11, Method:Compositional matrix adjust., Identities:95/407(23%), Positives:162/407(39%), Gaps:38/407(9%) Query 178 YHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMR-ELPTMDSAVFNVECFKRYACSGE 236 + +P +R+A P L L A KRN N + + D+A VE + Sbjct 1186 FLKPKIRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDTASLVVE---------K 1236 Query 237 YWEEYAKQP------IRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDM 290 +W+ Y + + +T E+ + +++K + L N V L V D + + Sbjct 1237 FWDSYVDKEFSGTNEMTMTRESFSRWLSKQESSTVGQL--ADFNFVDLPAV--DEYKHMI 1292 Query 291 KRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSA 350 K K +E P +Q I A + EL R L + + + Sbjct 1293 KSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDSSKFLFYTRKT 1352 Query 351 ----EDFDAIIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEA 406 EDF + + S +LE DI+ +DKSQ++ I E LG+D++L ++ + Sbjct 1353 PAQIEDFFSDLDST--QAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAEVWKQ 1410 Query 407 AFGEISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGD 466 + + G + KSG T NT++ S ++ + AAF GD Sbjct 1411 GHRKTTLKDYTAGVKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIP--MDKVIKAAFCGD 1468 Query 467 DNIVH---GVISDKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVS 523 D++++ G+ + A W N E K+ G YFCG +++ + A Sbjct 1469 DSLIYIPKGLDLPDIQAGANLMW-NFEAKLFRKKYG----YFCGRYVIHHD--RGAIVYY 1521 Query 524 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVAL 570 DPLK + KLG + E+ R +L D S ++L+ A+ Sbjct 1522 DPLKLISKLGCKHIRDVVHLEELRESLCDVASNLNNCAYFSQLDEAV 1568 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Obuda pepper virus] Sequence ID: P90211.1 Length: 1616 Range 1: 1198 to 1569 Score:67.4 bits(163), Expect:2e-10, Method:Compositional matrix adjust., Identities:94/389(24%), Positives:163/389(41%), Gaps:30/389(7%) Query 181 PTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAV------FNVECFKRYACS 234 P +R+A P L L A KRN N ++ M++ F F + S Sbjct 1198 PVIRTAAERPRSQGLLENLVAMIKRNFNSPELSGTVDMENTASVVADRFFDSYFLKDKLS 1257 Query 235 GEYWEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDV 294 G + + I I + + ++ K + L ++ V L + R + + Sbjct 1258 GCSLGDSGGKNI-IDRQALIRWMEKQEKSTIGQL--ADYDFVDLPAIDQYRHIIKSQPKQ 1314 Query 295 KVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSA---- 350 K+ + E P +Q I A I EL R++ + + + + F Sbjct 1315 KLDLSIQ--SEYPSLQTIVYHSKKINALFGPIFSELTRQMLSAIDTSRYLFFTRKTPEQI 1372 Query 351 EDFDAIIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGE 410 E+F + + +H P + VLE D++ +DKSQ++ I + LG+D++L ++ + + Sbjct 1373 EEFFSDLDAH-QPME-VLELDVSKYDKSQNEFHCAVEYEIWKRLGIDEFLAEVWKQGHRK 1430 Query 411 ISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIV 470 + G + KSG T NTV+ + +L + AAF GDD++V Sbjct 1431 TTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIAACMASMLP--MEKVIKAAFCGDDSLV 1488 Query 471 HGVISDKL-MAERCAS--WVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLK 527 + +L + CA+ W N E K+ G YFCG +++ + A DPLK Sbjct 1489 YLPKGCELPNIQSCANLMW-NFEAKLFKKTYG----YFCGRYVIHHD--RGAIVYVDPLK 1541 Query 528 RLFKLGKPLTAEDKQDEDRRRALSDEVSK 556 + KLG + + E+ R +L+D VSK Sbjct 1542 IISKLGAKHITDKEHLEEFRISLAD-VSK 1569 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Sunn-hemp mosaic virus] Sequence ID: P89202.2 Length: 1629 Range 1: 1208 to 1629 Score:63.2 bits(152), Expect:6e-09, Method:Compositional matrix adjust., Identities:97/443(22%), Positives:167/443(37%), Gaps:38/443(8%) Query 178 YHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEY 237 + +P + +AV P L L A KRN N + + + + R C G + Sbjct 1208 FLRPLLNTAVEPPRIPGLLENLLALIKRNFNAPDL-------AGQLDYDFLSRKVCDGFF 1260 Query 238 WE---------EYAKQPI--RITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRF 286 + E + P+ + +N ++ K + L H +P D++ Sbjct 1261 GKLLPPDVEASELLRLPVDHMYSVQNFDDWLNKQEPGVVGQLANWDHIGMP----AADQY 1316 Query 287 TVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLF 346 +KR K E P +Q I A I L RL +V+ P F Sbjct 1317 RHMIKRTPKAKLDLSIQSEYPALQTIVYHSKHVNAVFGPIFSCLTERLLSVVDPLRFKFF 1376 Query 347 DMSA-EDFDAIIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIE 405 + D + +LE DI+ +DKSQ+ + I E LG+D+Y+ + E Sbjct 1377 TRTTPADLEFFFRDMVVGDMEILELDISKYDKSQNKFHFEVEMRIWEMLGIDKYIEKVWE 1436 Query 406 AAFGEISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIG 465 + G + KSG T NT++ +L + A F G Sbjct 1437 NGHRKTHLRDYTAGIKTVIEYQRKSGDVTTFIGNTIIIAACLCSILP--MEKVFKAGFCG 1494 Query 466 DDNIVH---GVISDKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRV 522 DD+I++ ++ + + W N E K+ + G YFCG + + + + + Sbjct 1495 DDSIIYLPRNLLYPDIQSVSNNMW-NFEAKLFKKLHG----YFCGRYXLRNG--RYLRLL 1547 Query 523 SDPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKWFRTGLGAE-LEVALTSRY-EVEGCK 580 DPLK + KLG + E+ R ++ D + ++ G + LE A+ + + EGC Sbjct 1548 PDPLKIITKLGCKAIKDWDHLEEFRISMFDMACE-YKNCFGFDVLESAVKESFPKAEGCN 1606 Query 581 SILIAMATLARDIKAFKKLRGPV 603 A+ + F+ L V Sbjct 1607 VAFCAIYKFLSNKYLFRTLFSDV 1629 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Brome mosaic virus] Sequence ID: P03594.1 Length: 822 Range 1: 462 to 629 Score:60.8 bits(146), Expect:3e-08, Method:Compositional matrix adjust., Identities:52/179(29%), Positives:82/179(45%), Gaps:15/179(8%) Query 368 LETDIASFDKSQDDSLALTGLMILEDLG----VDQYLLDLIEAAFGEISSCHLPTGTRFK 423 LE D++ FDKSQ + IL LG + + D ++ +S H G Sbjct 462 LEADLSKFDKSQGELHLEFQREILLALGFPAPLTNWWSDFHRDSY--LSDPHAKVGMSVS 519 Query 424 FGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMAERC 483 F ++G T F NT+ +T+A L+D CA F GDD+++ + L + Sbjct 520 F--QRRTGDAFTYFGNTL--VTMAMIAYASDLSDCDCAIFSGDDSLIISKVKPVLDTDMF 575 Query 484 ASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAEDKQ 542 S NME+K++D + PY C F+V ++ V DPL+ + +L K D+Q Sbjct 576 TSLFNMEIKVMDPSV----PYVCSKFLV-ETEMGNLVSVPDPLREIQRLAKRKILRDEQ 629 >RecName: Full=Replicase polyprotein 1ab; Contains: RecName: Full=Leader protease; Short=L-Pro; AltName: Full=Papain-like cysteine proteinase; Short=PCP; Contains: RecName: Full=Methyltransferase/helicase/RNA-directed RNA polymerase [Beet yellows virus isolate Ukraine] Sequence ID: Q08534.2 Length: 3094 Range 1: 2697 to 3063 Score:60.1 bits(144), Expect:5e-08, Method:Compositional matrix adjust., Identities:95/386(25%), Positives:151/386(39%), Gaps:37/386(9%) Query 246 IRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGTKHTEE 305 I IT + + T+++K + + AL + + L+E + F + +KRD KV + + Sbjct 2697 IAITEKGVRTWMSKREPSQLRALSSDLQKPLNLEE-EITTFKLMVKRDAKVKLDSSCLVK 2755 Query 306 RPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAEDFDAIIASHFHPGD 365 P Q I A E R+ N+ +M+ A IA + Sbjct 2756 HPPAQNIMFHRKAVNAIFSPCFDEFKNRVITCTNSNIVFFTEMTNSTL-ASIAKEMLGSE 2814 Query 366 PVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGTRF 422 V E D + FDKSQD + + G D+ LLD+ ++ L F Sbjct 2815 HVYNVGEIDFSKFDKSQDAFIKSFERTLYSAFGFDEDLLDVWMQGEYTSNATTLDGQLSF 2874 Query 423 KFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFI-GDDNIVHGVISDKLMAE 481 KSG T N++ + I S T+ A F+ GDD+++ + A+ Sbjct 2875 SVDNQRKSGASNTWIGNSIETLGILSMFY---YTNRFKALFVSGDDSLIFSESPIRNSAD 2931 Query 482 RCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGKPLTAEDK 541 + + E K + + PYFC F V V DP K L KLG ++D+ Sbjct 2932 AMCTELGFETKFLTPSV----PYFCSKFFVMTG--HDVFFVPDPYKLLVKLG---ASKDE 2982 Query 542 QDEDRRRALSDEVSKWFR---TGLGAELEVALTSR-------YEVEGCKSILIAMATLAR 591 D++ EV FR L E + L + YE + L A+ + Sbjct 2983 VDDE----FLFEVFTSFRDLTKDLVDERVIELLTHLVHSKYGYESGDTYAALCAIHCIRS 3038 Query 592 DIKAFKKL----RGPVIHLYGGPRLV 613 + +FKKL +G V+H YG + V Sbjct 3039 NFSSFKKLYPKVKGWVVH-YGKLKFV 3063 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cowpea chlorotic mottle virus] Sequence ID: P20179.1 Length: 808 Range 1: 473 to 632 Score:51.6 bits(122), Expect:2e-05, Method:Compositional matrix adjust., Identities:44/167(26%), Positives:71/167(42%), Gaps:7/167(4%) Query 368 LETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFGEISSCHLPTGTRFKFGAM 427 LE D++ FDKSQ + IL LG L + E G Sbjct 473 LEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNWWCDFHRESMLSDPHAGVNMPVSFQ 532 Query 428 MKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMAERCASWV 487 ++G T F NT++ + + + + D CA F GDD+++ L A S Sbjct 533 RRTGDAFTYFGNTLVTMAMMAYCCDMNTVD--CAIFSGDDSLLICKSKPHLDANVFQSLF 590 Query 488 NMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDPLKRLFKLGK 534 NME+K++D + PY C F++ ++ V DP++ + +L K Sbjct 591 NMEIKVMDPSL----PYVCSKFLL-ETEMNNLVSVPDPMREIQRLAK 632 >RecName: Full=RNA-directed RNA polymerase 2a; Short=protein 2a [Cucumber mosaic virus (strain Q)] Sequence ID: P06012.1 Length: 839 Range 1: 346 to 679 Score:41.6 bits(96), Expect:0.019, Method:Compositional matrix adjust., Identities:77/358(22%), Positives:135/358(37%), Gaps:31/358(8%) Query 193 NTLQNVLAAATKRNCNVTQMRELPTMDSAVFNVECFKRYACSGEYWEEYAKQPIRITTEN 252 T + VL A KRN +V ++ + +++ + + +R+ S + AK N Sbjct 346 GTTKEVLTAIKKRNADVPELGD--SVNLSRLSKAVAERFRLSYMNVDALAKSNFVNVVSN 403 Query 253 ITTYVTKLKGPKAAALFAKTHNLVPLQEVPMDRFTVDMKRDVKVTPGTKHTEERPKVQVI 312 Y+ K P + + +L L + + +K DVK +RP I Sbjct 404 FHAYMQKW--PSSGLSY---DDLPDLHAENLQFYDHMIKSDVKPVVTDTLNVDRPVPATI 458 Query 313 QAAEPLATAYLCGIHRELVRRLNAVLRPNV-HTLFDMSAEDFDAIIASHFHPGDPVLETD 371 + T+ + L R LR V + +S+ + + H LE D Sbjct 459 TFHKKTITSQFSPLFISLFERFQRCLRERVVLPVGKISSLEMTGFSVLNKH----CLEID 514 Query 372 IASFDKSQDDSLALTGLMILEDLG----VDQYLLDLIEAAFGEISSCHLPTGTRFKFGAM 427 ++ FDKSQ + + IL DLG + ++ D F I G F Sbjct 515 LSKFDKSQGEFHLMIQEHILNDLGCPAPITKWWCDF--HRFSYIKDKRAGVGMPISF--Q 570 Query 428 MKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNIVHGVISDKLMAERCASWV 487 ++G T F NT++ + + + D F GDD++ + + + Sbjct 571 RRTGDAFTYFGNTIVTMAEFAWCYDTDQFDRLL--FSGDDSLAFSKLPPVGDPSKFTTLF 628 Query 488 NMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVSDP-LKRLFKLG-KPLTAEDKQD 543 NME K+++ + PY C F S+ R P ++ + +LG K + D D Sbjct 629 NMEAKVMEPAV----PYICSKFY---SLMSLVTRFQSPTIREIQRLGTKKIPYSDNND 679