RID: A2MCNV0B013 Job Title:POLG_JAEVN P14403 POLG_JAEVN Genome polyprotein... Program: BLASTP Query: POLG_JAEVN P14403 POLG_JAEVN Genome polyprotein Protein prM ID: lcl|Query_77417(amino acid) Length: 169 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11076 361 361 100% 2e-117 100.00 1440 P14403.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 11073 335 335 100% 5e-109 95.27 1198 P0DOH7.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 11074 335 335 100% 5e-109 95.27 1198 P0DOH9.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 11075 334 334 100% 2e-108 95.27 1198 P0DOH8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11074 336 336 100% 1e-107 95.27 3432 P19110.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11073 336 336 100% 1e-107 95.27 3432 P27395.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 11075 335 335 100% 3e-107 95.27 3432 P32886.1 RecName: Full=Structural polyprotein; Contains: RecName:... Japanese enc... NA 2555554 328 328 100% 2e-106 93.49 1198 P0DOK8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Japanese enc... NA 2555554 329 329 100% 3e-105 93.49 3432 G3FEX6.1 RecName: Full=Genome polyprotein; Contains: RecName:... Murray valle... NA 301478 291 291 100% 4e-92 78.11 3434 P05769.2 RecName: Full=Genome polyprotein; Contains: RecName:... Usutu virus NA 64286 277 277 100% 6e-87 77.51 3434 Q5WPU5.1 RecName: Full=Genome polyprotein; Contains: RecName:... West Nile virus NA 11082 244 244 98% 1e-75 73.65 3430 P06935.2 RecName: Full=Genome polyprotein; Contains: RecName:... West Nile vi... NA 1968826 228 228 98% 7e-70 72.46 3433 Q9Q6P4.2 RecName: Full=Genome polyprotein; Contains: RecName:... Kunjin virus... NA 11078 226 226 89% 5e-69 72.19 3433 P14335.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Rocio virus NA 64315 221 221 100% 3e-67 56.80 3425 Q32ZD4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... St. Louis en... NA 11081 208 208 100% 6e-63 60.36 3412 P09732.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Ilheus virus NA 59563 176 176 100% 7e-52 50.30 3424 Q32ZD7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Bussuquara v... NA 64304 169 169 94% 3e-49 49.06 3429 Q32ZE0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kokobera virus NA 44024 165 165 95% 6e-48 50.62 3410 Q32ZD5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus NA 64320 147 147 93% 1e-41 40.88 3419 Q32ZE1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408686 142 142 98% 9e-40 39.52 3387 Q58HT7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408688 141 141 98% 2e-39 39.52 3387 Q2YHF0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408687 140 140 98% 3e-39 38.92 3387 Q5UCB8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408871 140 140 98% 3e-39 38.92 3387 P09866.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408689 139 139 98% 6e-39 38.92 3387 Q2YHF2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA 2316109 137 137 93% 6e-38 40.88 3423 A0A142I5B9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Zika virus Z... NA 2043570 135 135 93% 1e-37 40.88 3423 A0A024B7W1.1 RecName: Full=Genome polyprotein; Contains: RecName:... Dengue virus... NA 11068 129 129 82% 2e-35 43.17 679 P18356.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11064 129 129 82% 2e-35 43.17 3391 P07564.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11065 129 129 82% 2e-35 43.17 3391 P14340.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 413041 129 129 82% 2e-35 43.17 3391 P14337.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408694 129 129 82% 3e-35 42.45 3391 Q9WDA6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11066 129 129 82% 3e-35 42.45 3388 P12823.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31634 126 126 82% 3e-34 41.73 3391 P29990.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31635 124 124 82% 2e-33 41.01 3391 P29991.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11059 121 121 83% 1e-32 39.72 3392 P17763.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11057 119 119 83% 4e-32 38.30 792 P27912.1 RecName: Full=Genome polyprotein; Contains: RecName:... Dengue virus... NA 408685 120 120 83% 4e-32 39.01 3392 P27909.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 11058 119 119 83% 1e-31 38.30 791 P27913.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Edge Hill virus NA 64296 118 118 98% 2e-31 33.93 3401 C8XPB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 33741 118 118 83% 2e-31 38.30 3391 P33478.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407139 117 117 94% 4e-31 37.27 3412 Q1X880.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407140 117 117 94% 5e-31 37.27 3412 Q1X881.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407141 116 116 94% 6e-31 37.27 3412 Q074N0.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 31636 115 115 82% 1e-30 41.73 1127 P30026.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408870 114 114 98% 5e-30 34.73 3390 P27915.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408690 114 114 98% 5e-30 34.73 3390 Q99D35.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408692 114 114 98% 6e-30 34.73 3390 Q6YMS4.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408691 113 113 98% 8e-30 34.73 3390 Q6YMS3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Dengue virus... NA 408693 112 112 98% 2e-29 34.73 3390 Q5UB51.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Banzi virus NA 38837 105 105 94% 6e-27 36.25 3393 C8XPA8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Wesselsbron ... NA 164416 104 104 94% 1e-26 38.65 3405 C5H431.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407136 104 104 94% 1e-26 36.65 3411 Q6J3P1.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407134 103 103 94% 2e-26 36.65 3411 Q6DV88.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407138 103 103 94% 2e-26 36.65 3411 Q98803.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407135 103 103 94% 2e-26 36.65 3411 Q89277.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 407137 103 103 94% 2e-26 36.65 3411 Q9YRV3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 11090 103 103 94% 2e-26 36.65 3411 P03314.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Yellow fever... NA 31641 100 100 94% 2e-25 36.02 1163 P29165.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Omsk hemorrh... NA 12542 97.4 97.4 95% 4e-24 31.29 3414 Q7T6D2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Alkhumra hem... NA 172148 88.6 88.6 95% 4e-21 33.33 3416 Q91B85.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Kyasanur For... NA 33743 87.8 87.8 95% 7e-21 31.52 3416 D7RF80.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Louping ill ... NA 11086 87.8 87.8 81% 7e-21 31.65 3414 P22338.2 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 11088 87.4 87.4 81% 1e-20 30.94 3414 P14336.4 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 70733 86.7 86.7 81% 2e-20 30.94 3414 Q01299.1 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne p... NA 39008 86.7 86.7 96% 2e-20 29.88 3415 Q04538.1 RecName: Full=Genome polyprotein; Contains: RecName:... Tick-borne e... NA 11087 85.1 85.1 81% 7e-20 30.94 3412 P07720.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Langat virus... NA 31639 78.2 78.2 95% 2e-17 28.83 776 P29838.2 RecName: Full=Genome polyprotein; Contains: RecName:... Langat virus... NA 31638 77.8 77.8 95% 2e-17 28.83 3414 P29837.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Smal... Dengue virus... NA 31637 46.6 46.6 29% 1e-06 40.00 555 P29984.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cell fusing ... NA 31658 36.2 36.2 61% 0.005 25.71 3341 P33515.1 Alignments: >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3 [Japanese encephalitis virus strain Nakayama] Sequence ID: P14403.1 Length: 1440 Range 1: 54 to 222 Score:361 bits(927), Expect:2e-117, Method:Compositional matrix adjust., Identities:169/169(100%), Positives:169/169(100%), Gaps:0/169(0%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 54 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 113 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 114 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 173 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS Sbjct 174 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 222 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain SA-14] Sequence ID: P0DOH7.1 Length: 1198 Range 1: 128 to 294 Score:335 bits(859), Expect:5e-109, Method:Compositional matrix adjust., Identities:161/169(95%), Positives:164/169(97%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLTMG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA+LGWMLGSNNGQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAAVLGWMLGSNNGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain SA(V)] Sequence ID: P0DOH9.1 Length: 1198 Range 1: 128 to 294 Score:335 bits(859), Expect:5e-109, Method:Compositional matrix adjust., Identities:161/169(95%), Positives:164/169(97%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLTMG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA+LGWMLGSNNGQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAAVLGWMLGSNNGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain JAOARS982] Sequence ID: P0DOH8.1 Length: 1198 Range 1: 128 to 294 Score:334 bits(856), Expect:2e-108, Method:Compositional matrix adjust., Identities:161/169(95%), Positives:163/169(96%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLTMG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA LGWMLGSNNGQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAATLGWMLGSNNGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA(V)] Sequence ID: P19110.1 Length: 3432 Range 1: 128 to 294 Score:336 bits(862), Expect:1e-107, Method:Compositional matrix adjust., Identities:161/169(95%), Positives:164/169(97%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLTMG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA+LGWMLGSNNGQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAAVLGWMLGSNNGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain SA-14] Sequence ID: P27395.1 Length: 3432 Range 1: 128 to 294 Score:336 bits(862), Expect:1e-107, Method:Compositional matrix adjust., Identities:161/169(95%), Positives:164/169(97%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLTMG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA+LGWMLGSNNGQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAAVLGWMLGSNNGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain JAOARS982] Sequence ID: P32886.1 Length: 3432 Range 1: 128 to 294 Score:335 bits(859), Expect:3e-107, Method:Compositional matrix adjust., Identities:161/169(95%), Positives:163/169(96%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKLTMG Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLTMG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA LGWMLGSNNGQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAATLGWMLGSNNGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Structural polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1'; Short=NS1' [Japanese encephalitis virus strain M28] Sequence ID: P0DOK8.1 Length: 1198 Range 1: 128 to 294 Score:328 bits(842), Expect:2e-106, Method:Compositional matrix adjust., Identities:158/169(93%), Positives:162/169(95%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKL +G Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLAVG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA LGWMLGSN+GQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAAALGWMLGSNSGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Japanese encephalitis virus strain M28] Sequence ID: G3FEX6.1 Length: 3432 Range 1: 128 to 294 Score:329 bits(843), Expect:3e-105, Method:Compositional matrix adjust., Identities:158/169(93%), Positives:162/169(95%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 MKLSNFQGKLLMT+NNTDIADVIVIP SKGENRCWVRAIDVGYMCEDTITYECPKL +G Sbjct 128 MKLSNFQGKLLMTINNTDIADVIVIPT-SKGENRCWVRAIDVGYMCEDTITYECPKLAVG 186 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR Sbjct 187 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 246 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAFLAA LGWMLGSN+GQR FTILLLLVAPAYS Sbjct 247 YLMKTENWIIRNPGYAFLAAALGWMLGSNSGQRV-VFTILLLLVAPAYS 294 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Murray valley encephalitis virus (strain MVE-1-51)] Sequence ID: P05769.2 Length: 3434 Range 1: 126 to 292 Score:291 bits(746), Expect:4e-92, Method:Compositional matrix adjust., Identities:132/169(78%), Positives:150/169(88%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 +KLS FQGK++MTVN TDIADVI IP P KG N+CW+RAID+G+MC+DTITYECPKL G Sbjct 126 LKLSTFQGKIMMTVNATDIADVIAIPTP-KGPNQCWIRAIDIGFMCDDTITYECPKLESG 184 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPED+DCWCD Q VYV YGRCTR RHSKRSRRS++VQTHGES+LVNKK+AWLDSTKATR Sbjct 185 NDPEDIDCWCDKQAVYVNYGRCTRARHSKRSRRSITVQTHGESTLVNKKDAWLDSTKATR 244 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YL KTENWI+RNPGYA +A +LGWMLGSN GQ+ FT+LLLLVAPAYS Sbjct 245 YLTKTENWIIRNPGYALVAVVLGWMLGSNTGQKV-IFTVLLLLVAPAYS 292 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Usutu virus] Sequence ID: Q5WPU5.1 Length: 3434 Range 1: 127 to 293 Score:277 bits(708), Expect:6e-87, Method:Compositional matrix adjust., Identities:131/169(78%), Positives:152/169(89%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 +KLSNFQGK++MT+N TD+ADVIV+P G+N+CW+RA+DVGYMC+DTITYECPKL G Sbjct 127 LKLSNFQGKVMMTINATDMADVIVVPT-QHGKNQCWIRAMDVGYMCDDTITYECPKLDAG 185 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPED+DCWCD Q +YV YGRCTRTRHSKRSRRS++VQTHGES L NKK+AWLDSTKA+R Sbjct 186 NDPEDIDCWCDKQPMYVHYGRCTRTRHSKRSRRSIAVQTHGESMLANKKDAWLDSTKASR 245 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YLMKTENWI+RNPGYAF+A +LGWMLGSNNGQR F +LLLLVAPAYS Sbjct 246 YLMKTENWIIRNPGYAFVAVLLGWMLGSNNGQRV-VFVVLLLLVAPAYS 293 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus] Sequence ID: P06935.2 Length: 3430 Range 1: 126 to 290 Score:244 bits(623), Expect:1e-75, Method:Compositional matrix adjust., Identities:123/167(74%), Positives:143/167(85%), Gaps:2/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LSNFQGK++MTVN TD+ DVI IP + G+N C VRA+DVGY+CEDTITYECP L GND Sbjct 126 LSNFQGKVMMTVNATDVTDVITIPT-AAGKNLCIVRAMDVGYLCEDTITYECPVLAAGND 184 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC VYV+YGRCT+TRHS+RSRRS++VQTHGES+L NKK AWLDSTKATRYL Sbjct 185 PEDIDCWCTKSSVYVRYGRCTKTRHSRRSRRSLTVQTHGESTLANKKGAWLDSTKATRYL 244 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +KTE+WI+RNPGYA +AA++GWMLGSN QR F ILLLLVAPAYS Sbjct 245 VKTESWILRNPGYALVAAVIGWMLGSNTMQRV-VFAILLLLVAPAYS 290 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [West Nile virus strain NY-99] Sequence ID: Q9Q6P4.2 Length: 3433 Range 1: 126 to 290 Score:228 bits(581), Expect:7e-70, Method:Compositional matrix adjust., Identities:121/167(72%), Positives:144/167(86%), Gaps:2/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LSNFQGK++MTVN TD+ DVI IP + G+N C VRA+DVGYMC+DTITYECP L+ GND Sbjct 126 LSNFQGKVMMTVNATDVTDVITIPT-AAGKNLCIVRAMDVGYMCDDTITYECPVLSAGND 184 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC VYV+YGRCT+TRHS+RSRRS++VQTHGES+L NKK AW+DSTKATRYL Sbjct 185 PEDIDCWCTKSAVYVRYGRCTKTRHSRRSRRSLTVQTHGESTLANKKGAWMDSTKATRYL 244 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +KTE+WI+RNPGYA +AA++GWMLGSN QR F +LLLLVAPAYS Sbjct 245 VKTESWILRNPGYALVAAVIGWMLGSNTMQRV-VFVVLLLLVAPAYS 290 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kunjin virus (STRAIN MRM61C)] Sequence ID: P14335.1 Length: 3433 Range 1: 126 to 275 Score:226 bits(575), Expect:5e-69, Method:Compositional matrix adjust., Identities:109/151(72%), Positives:133/151(88%), Gaps:1/151(0%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LSNFQGK++MTVN TD+ D+I IP P+ G+N C VRA+DVG+MC+DTITYECP L+ GND Sbjct 126 LSNFQGKVMMTVNATDVTDIITIP-PAAGKNLCIVRAMDVGHMCDDTITYECPVLSAGND 184 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC VYV+YGRCT+TRHS+RSRRS++VQTHGES+L NKK AW+DSTKATRYL Sbjct 185 PEDIDCWCTKLAVYVRYGRCTKTRHSRRSRRSLTVQTHGESTLSNKKGAWMDSTKATRYL 244 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQR 153 +KTE+WI+RNPGYA +AA++GWMLGSN QR Sbjct 245 VKTESWILRNPGYALVAAVIGWMLGSNTMQR 275 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Rocio virus] Sequence ID: Q32ZD4.1 Length: 3425 Range 1: 119 to 285 Score:221 bits(562), Expect:3e-67, Method:Compositional matrix adjust., Identities:96/169(57%), Positives:128/169(75%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 ++L +QGK+LM++N TD+A++I IP +KG+N C VRA+DVGYMC++ ITYECP+L G Sbjct 119 LRLGTYQGKVLMSINKTDVAEIIPIPT-TKGDNLCTVRAMDVGYMCQNDITYECPRLEPG 177 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 DPED+DCWCD + +YV YG CT+ +R RRSV++ +HGES L N+ WLD+ K T+ Sbjct 178 MDPEDIDCWCDREAIYVHYGLCTKNHRERRGRRSVNIPSHGESQLENRGTPWLDTAKTTK 237 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YL K ENW++RNPGYA +A WMLGSN Q+ FTI+LLL+APAYS Sbjct 238 YLTKVENWMIRNPGYAIVAVAAAWMLGSNTSQKV-IFTIMLLLIAPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [St. Louis encephalitis virus (strain MS1-7)] Sequence ID: P09732.2 Length: 3412 Range 1: 122 to 288 Score:208 bits(529), Expect:6e-63, Method:Compositional matrix adjust., Identities:102/169(60%), Positives:130/169(76%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 ++LS +QGK+LM++N TD I IP+ + G N C VRA+DVG MC++ ITY CP L+ G Sbjct 122 LQLSTYQGKVLMSINKTDAQSAINIPS-ANGANTCIVRALDVGVMCKNDITYLCPVLSAG 180 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 NDPED+DCWCD +EV+V YGRCTR HS+RSRRS+SVQ HG+S+L K WLD+ K T+ Sbjct 181 NDPEDIDCWCDVEEVWVHYGRCTRMGHSRRSRRSISVQHHGDSTLATKNTPWLDTVKTTK 240 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YL K ENW++RNPGYA +A +GWMLGSNN QR F I+L+L+APAYS Sbjct 241 YLTKVENWVLRNPGYALVALAIGWMLGSNNTQRV-VFVIMLMLIAPAYS 288 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Ilheus virus] Sequence ID: Q32ZD7.1 Length: 3424 Range 1: 119 to 285 Score:176 bits(447), Expect:7e-52, Method:Compositional matrix adjust., Identities:85/169(50%), Positives:117/169(69%), Gaps:2/169(1%) Query 1 MKLSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMG 60 +K+S+ + + L+ VN TD++D I +P+ KG N C +RA+DVGY C TYECP L + Sbjct 119 LKISSHRDRPLLMVNKTDVSDAIPVPS-VKGTNMCTIRALDVGYTCAYDTTYECPHLEVT 177 Query 61 NDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATR 120 DPED+DCWC + VYV YG C + H +R RR++++ HGES L N+ W+D+TK T+ Sbjct 178 MDPEDIDCWCTLESVYVNYGLCKQNHHVRRGRRAINIPHHGESHLENRATPWMDTTKTTK 237 Query 121 YLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 YL K ENW++RNPGYA +A WMLGSN QR F I+++L+APAYS Sbjct 238 YLTKVENWVIRNPGYALVALATAWMLGSNTPQRV-VFMIMMMLIAPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Bussuquara virus] Sequence ID: Q32ZE0.1 Length: 3429 Range 1: 136 to 292 Score:169 bits(427), Expect:3e-49, Method:Compositional matrix adjust., Identities:78/159(49%), Positives:104/159(65%), Gaps:2/159(1%) Query 11 LMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWC 70 +M V D+ + IP N CWV A+DVG+ CEDTI YECP L +G +P D+DCWC Sbjct 136 IMDVTKKDVGKALEIPF-QNFNNTCWVMAMDVGHPCEDTIEYECPSLDIGAEPNDIDCWC 194 Query 71 DNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIV 130 D + V+YGRCT+ KRSRR+ H E+ L ++E W+++ ++L+K E W + Sbjct 195 DTMPMRVRYGRCTKGSIPKRSRRNAVFPQHTENVLATRQETWMNTDVIMKHLIKVETWAL 254 Query 131 RNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 RNPG+A +A LGWMLGSN Q + FTILLLLVAPAY+ Sbjct 255 RNPGFALVAITLGWMLGSNRSQ-KIIFTILLLLVAPAYN 292 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Kokobera virus] Sequence ID: Q32ZD5.1 Length: 3410 Range 1: 127 to 286 Score:165 bits(418), Expect:6e-48, Method:Compositional matrix adjust., Identities:82/162(51%), Positives:115/162(70%), Gaps:2/162(1%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G LM + D+ VI I +GENRC V+A+DVG CEDT+ Y CP + ++P+D+D Sbjct 127 GMSLMKIQKADVGKVITI-RTDRGENRCIVQAMDVGEDCEDTMKYLCPAIENPSEPDDID 185 Query 68 CWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTEN 127 CWCD + V YGRC++TRHS+RSRRS ++ H +S L ++ W+D+ KAT YL K E+ Sbjct 186 CWCDKADAMVTYGRCSKTRHSRRSRRSTNIAGHADSRLDSRGSVWMDTKKATSYLTKAES 245 Query 128 WIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 W +RNPGYA +AA+LGW LG++N Q+ FT+++LL+APAYS Sbjct 246 WALRNPGYALVAAVLGWSLGTSNAQKV-IFTVMILLIAPAYS 286 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus] Sequence ID: Q32ZE1.1 Length: 3419 Range 1: 134 to 290 Score:147 bits(370), Expect:1e-41, Method:Compositional matrix adjust., Identities:65/159(41%), Positives:105/159(66%), Gaps:3/159(1%) Query 12 MTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCD 71 M ++ +D I + G N+C V+ +D+G+MC+ T++YECP L G +P+DVDCWC+ Sbjct 134 MYLDRSDAGKAISFAT-TLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCN 192 Query 72 NQEVYVQYGRCTRTR-HSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIV 130 +V YG C + ++RSRR+V++ +H L + + WL+S + T++L+K ENWI Sbjct 193 TTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIKVENWIF 252 Query 131 RNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 RNPG+A +A + W+LGS+ Q+ Y +++LL+APAYS Sbjct 253 RNPGFALVAVAIAWLLGSSTSQKVIYL-VMILLIAPAYS 290 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Philippines/H241/1956] Sequence ID: Q58HT7.1 Length: 3387 Range 1: 116 to 279 Score:142 bits(357), Expect:9e-40, Method:Compositional matrix adjust., Identities:66/167(40%), Positives:104/167(62%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LS G+ LM V + ++ ++G N+C + A+D+G MCEDT+TYECP L + + Sbjct 116 LSTRDGEPLMIVARHERGRPLLFKT-TEGINKCTLIAMDLGEMCEDTVTYECP-LLVNTE 173 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG CT++ +R +RSV++ H L + E W+ S A ++ Sbjct 174 PEDIDCWCNLTSAWVMYGTCTQSGERRREKRSVALTPHSGMGLETRAETWMSSEGAWKHA 233 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 + E+WI+RNPG+A LA + +M+G QR +F +L++LVAP+Y Sbjct 234 QRVESWILRNPGFALLAGFMAYMIGQTGIQRTVFF-VLMMLVAPSYG 279 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Thailand/0348/1991] Sequence ID: Q2YHF0.1 Length: 3387 Range 1: 116 to 279 Score:141 bits(355), Expect:2e-39, Method:Compositional matrix adjust., Identities:66/167(40%), Positives:104/167(62%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LS G+ LM V + ++ ++G N+C + A+D+G MCEDT+TY+CP L + + Sbjct 116 LSTRDGEPLMIVAKHERGRPLLFKT-TEGINKCTLIAMDLGEMCEDTVTYKCP-LLVNTE 173 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG CT++ +R +RSV++ H L + E W+ S A ++ Sbjct 174 PEDIDCWCNLTSAWVMYGTCTQSGERRREKRSVALTPHSGMGLETRAETWMSSEGAWKHA 233 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 + E+WI+RNPG+A LA + +M+G QR +F IL++LVAP+Y Sbjct 234 QRVESWILRNPGFALLAGFMAYMIGQTGIQRTVFF-ILMMLVAPSYG 279 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Singapore/8976/1995] Sequence ID: Q5UCB8.1 Length: 3387 Range 1: 116 to 279 Score:140 bits(353), Expect:3e-39, Method:Compositional matrix adjust., Identities:65/167(39%), Positives:104/167(62%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LS G+ LM V + ++ ++G N+C + A+D+G MCEDT+TY+CP L + + Sbjct 116 LSTRDGEPLMIVAKHERGRPLLFKT-TEGINKCTLIAMDLGEMCEDTVTYKCP-LLVNTE 173 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG CT++ +R +RSV++ H L + E W+ S A ++ Sbjct 174 PEDIDCWCNLTSTWVMYGTCTQSGERRREKRSVALTPHSGMGLETRAETWMSSEGAWKHA 233 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 + E+WI+RNPG+A LA + +M+G QR +F +L++LVAP+Y Sbjct 234 QRVESWILRNPGFALLAGFMAYMIGQTGIQRTVFF-VLMMLVAPSYG 279 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Dominica/814669/1981] Sequence ID: P09866.2 Length: 3387 Range 1: 116 to 279 Score:140 bits(353), Expect:3e-39, Method:Compositional matrix adjust., Identities:65/167(39%), Positives:104/167(62%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LS G+ LM V + ++ ++G N+C + A+D+G MCEDT+TY+CP L + + Sbjct 116 LSTRDGEPLMIVAKHERGRPLLFKT-TEGINKCTLIAMDLGEMCEDTVTYKCP-LLVNTE 173 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG CT++ +R +RSV++ H L + E W+ S A ++ Sbjct 174 PEDIDCWCNLTSTWVMYGTCTQSGERRREKRSVALTPHSGMGLETRAETWMSSEGAWKHA 233 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 + E+WI+RNPG+A LA + +M+G QR +F +L++LVAP+Y Sbjct 234 QRVESWILRNPGFALLAGFMAYMIGQTGIQRTVFF-VLMMLVAPSYG 279 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 4 Thailand/0476/1997] Sequence ID: Q2YHF2.1 Length: 3387 Range 1: 116 to 279 Score:139 bits(351), Expect:6e-39, Method:Compositional matrix adjust., Identities:65/167(39%), Positives:103/167(61%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 LS G+ LM V + ++ ++G N+C + A+D+G MCEDT+TY+CP L + + Sbjct 116 LSTRDGEPLMIVAKHERGRPLLFKT-TEGINKCTLIAMDLGEMCEDTVTYKCP-LLVNTE 173 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG CT+ +R +RSV++ H L + E W+ S A ++ Sbjct 174 PEDIDCWCNLTSTWVMYGTCTQNGERRREKRSVALTPHSGMGLETRAETWMSSEGAWKHA 233 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 + E+WI+RNPG+A LA + +M+G QR +F +L++LVAP+Y Sbjct 234 QRVESWILRNPGFALLAGFMAYMIGQTGIQRTVFF-VLMMLVAPSYG 279 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/Human/Cambodia/FSS13025/2010] Sequence ID: A0A142I5B9.1 Length: 3423 Range 1: 134 to 290 Score:137 bits(344), Expect:6e-38, Method:Compositional matrix adjust., Identities:65/159(41%), Positives:108/159(67%), Gaps:3/159(1%) Query 12 MTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCD 71 M ++ +D + I P + G N+C+++ +D+G+MC+ T++YECP L G +P+DVDCWC+ Sbjct 134 MYLDRSDAGEAISFPT-TMGMNKCYIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCN 192 Query 72 NQEVYVQYGRCTRTR-HSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIV 130 +V YG C + ++RSRR+V++ +H L + + WL+S + T++L++ ENWI Sbjct 193 TTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIF 252 Query 131 RNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 RNPG+A AA + W+LGS+ Q+ Y +++LL+APAYS Sbjct 253 RNPGFALAAAAIAWLLGSSTSQKVIYL-VMILLIAPAYS 290 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013] Sequence ID: A0A024B7W1.1 Length: 3423 Range 1: 134 to 290 Score:135 bits(341), Expect:1e-37, Method:Compositional matrix adjust., Identities:65/159(41%), Positives:107/159(67%), Gaps:3/159(1%) Query 12 MTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCD 71 M ++ D + I P + G N+C+++ +D+G+MC+ T++YECP L G +P+DVDCWC+ Sbjct 134 MYLDRNDAGEAISFPT-TLGMNKCYIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCN 192 Query 72 NQEVYVQYGRCTRTR-HSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIV 130 +V YG C + ++RSRR+V++ +H L + + WL+S + T++L++ ENWI Sbjct 193 TTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIF 252 Query 131 RNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 RNPG+A AA + W+LGS+ Q+ Y +++LL+APAYS Sbjct 253 RNPGFALAAAAIAWLLGSSTSQKVIYL-VMILLIAPAYS 290 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 2 Thailand/PUO-218/1980] Sequence ID: P18356.2 Length: 679 Range 1: 44 to 180 Score:129 bits(324), Expect:2e-35, Method:Compositional matrix adjust., Identities:60/139(43%), Positives:89/139(64%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT T +R Sbjct 44 GVNMCTLMAMDLGELCEDTITYKCPLLRQ-NEPEDIDCWCNSTSTWVTYGTCTTTGEHRR 102 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A ++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 103 EKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIEIWILRHPGFTIMAAILAYTIGTTH 162 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL VAP+ + Sbjct 163 FQRALIF-ILLTAVAPSMT 180 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Jamaica/1409/1983] Sequence ID: P07564.2 Length: 3391 Range 1: 144 to 280 Score:129 bits(325), Expect:2e-35, Method:Compositional matrix adjust., Identities:60/139(43%), Positives:89/139(64%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + AID+G +CEDTITY+CP L N+PED+DCWC++ +V YG C T +R Sbjct 144 GVNMCTLMAIDLGELCEDTITYKCPLLRQ-NEPEDIDCWCNSTSTWVTYGTCATTGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A +++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETRTETWMSSEGAWKHVQRIETWILRHPGFTIMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL VAP+ + Sbjct 263 FQRALIF-ILLTAVAPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/NGS-C/1944] Sequence ID: P14340.2 Length: 3391 Range 1: 144 to 280 Score:129 bits(324), Expect:2e-35, Method:Compositional matrix adjust., Identities:60/139(43%), Positives:89/139(64%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT T +R Sbjct 144 GVNMCTLMAMDLGELCEDTITYKCPFLKQ-NEPEDIDCWCNSTSTWVTYGTCTTTGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A ++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL VAP+ + Sbjct 263 FQRALIF-ILLTAVAPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/0168/1979] Sequence ID: P14337.2 Length: 3391 Range 1: 144 to 280 Score:129 bits(324), Expect:2e-35, Method:Compositional matrix adjust., Identities:60/139(43%), Positives:89/139(64%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT T +R Sbjct 144 GVNMCTLMAMDLGELCEDTITYKCPLLRQ-NEPEDIDCWCNSTSTWVTYGTCTTTGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A ++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL VAP+ + Sbjct 263 FQRALIF-ILLTAVAPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Peru/IQT2913/1996] Sequence ID: Q9WDA6.1 Length: 3391 Range 1: 144 to 280 Score:129 bits(324), Expect:3e-35, Method:Compositional matrix adjust., Identities:59/139(42%), Positives:89/139(64%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT T +R Sbjct 144 GTNMCTLMAMDLGELCEDTITYKCPFLKQ-NEPEDIDCWCNSTSTWVTYGTCTTTGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A ++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL +AP+ + Sbjct 263 FQRVLIF-ILLTAIAPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Puerto Rico/PR159-S1/1969] Sequence ID: P12823.1 Length: 3388 Range 1: 144 to 280 Score:129 bits(323), Expect:3e-35, Method:Compositional matrix adjust., Identities:59/139(42%), Positives:89/139(64%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT T +R Sbjct 144 GTNMCTLMAMDLGELCEDTITYKCPFLKQ-NEPEDIDCWCNSTSTWVTYGTCTTTGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A ++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETRTETWMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL +AP+ + Sbjct 263 FQRVLIF-ILLTAIAPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 Thailand/16681/84] Sequence ID: P29990.1 Length: 3391 Range 1: 144 to 280 Score:126 bits(316), Expect:3e-34, Method:Compositional matrix adjust., Identities:58/139(42%), Positives:88/139(63%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT +R Sbjct 144 GVNMCTLMAMDLGELCEDTITYKCPLLRQ-NEPEDIDCWCNSTSTWVTYGTCTTMGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A +++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 QKRSVALVPHVGMGLETRTETWMSSEGAWKHVQRIETWILRHPGFTMMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR F ILL V P+ + Sbjct 263 FQRALIF-ILLTAVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 2 16681-PDK53] Sequence ID: P29991.1 Length: 3391 Range 1: 144 to 280 Score:124 bits(310), Expect:2e-33, Method:Compositional matrix adjust., Identities:57/139(41%), Positives:87/139(62%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + A+D+G +CEDTITY+CP L N+PED+DCWC++ +V YG CT +R Sbjct 144 GVNMCTLMAMDLGELCEDTITYKCPLLRQ-NEPEDIDCWCNSTSTWVTYGTCTTMGEHRR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L + E W+ S A +++ + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETRTETWMSSEGAWKHVQRIETWILRHPGFTMMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR ILL V P+ + Sbjct 263 FQRA-LILILLTAVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; AltName: Full=Precursor membrane protein; Contains: RecName: Full=Peptide pr; AltName: Full=Peptide precursor; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Nauru/West Pac/1974] Sequence ID: P17763.2 Length: 3392 Range 1: 142 to 280 Score:121 bits(303), Expect:1e-32, Method:Compositional matrix adjust., Identities:56/141(40%), Positives:89/141(63%), Gaps:2/141(1%) Query 29 SKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHS 88 S G N C + A+D+G +CEDT+TY+CP++T +P+DVDCWC+ E +V YG C++T Sbjct 142 SAGVNMCTLIAMDLGELCEDTMTYKCPRITE-TEPDDVDCWCNATETWVTYGTCSQTGEH 200 Query 89 KRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGS 148 +R +RSV++ H L + E W+ S A + + K E W +R+PG+ +A L +G+ Sbjct 201 RRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALRHPGFTVIALFLAHAIGT 260 Query 149 NNGQRRWYFTILLLLVAPAYS 169 + Q+ F ILL+LV P+ + Sbjct 261 SITQKGIIF-ILLMLVTPSMA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 1 Thailand/AHF 82-80/1980] Sequence ID: P27912.1 Length: 792 Range 1: 142 to 280 Score:119 bits(299), Expect:4e-32, Method:Compositional matrix adjust., Identities:54/141(38%), Positives:88/141(62%), Gaps:2/141(1%) Query 29 SKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHS 88 S G N C + A+D+G +CEDT+TY+CP++T +P+DVDCWC+ + +V YG C++T Sbjct 142 SAGVNMCTLIAMDLGELCEDTMTYKCPRMTEA-EPDDVDCWCNATDTWVTYGTCSQTGEH 200 Query 89 KRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGS 148 +R +RSV++ H L + E W+ S A + + K E W +R+PG+ + L +G+ Sbjct 201 RRDKRSVALDPHVGLGLETRTETWMSSEGAWKQIQKVETWALRHPGFTVIGLFLAHAIGT 260 Query 149 NNGQRRWYFTILLLLVAPAYS 169 + Q+ F ILL+LV P+ + Sbjct 261 SITQKGIIF-ILLMLVTPSMA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Brazil/97-11/1997] Sequence ID: P27909.2 Length: 3392 Range 1: 142 to 280 Score:120 bits(300), Expect:4e-32, Method:Compositional matrix adjust., Identities:55/141(39%), Positives:89/141(63%), Gaps:2/141(1%) Query 29 SKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHS 88 S G N C + A+D+G +CEDT+TY+CP++T +P+DVDCWC+ + +V YG C++T Sbjct 142 SAGVNMCTLIAMDLGELCEDTMTYKCPRITEA-EPDDVDCWCNATDTWVTYGTCSQTGEH 200 Query 89 KRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGS 148 +R +RSV++ H L + E W+ S A + + K E W +R+PG+ +A L +G+ Sbjct 201 RRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALRHPGFTVIALFLAHAIGT 260 Query 149 NNGQRRWYFTILLLLVAPAYS 169 + Q+ F ILL+LV P+ + Sbjct 261 SITQKGIIF-ILLMLVTPSMA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 1 Jamaica/CV1636/1977] Sequence ID: P27913.1 Length: 791 Range 1: 142 to 280 Score:119 bits(297), Expect:1e-31, Method:Compositional matrix adjust., Identities:54/141(38%), Positives:87/141(61%), Gaps:2/141(1%) Query 29 SKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHS 88 S G N C + A+D+G +CEDT+TY+CP++T P+DVDCWC+ + +V YG C++T Sbjct 142 SAGVNMCTLIAMDLGELCEDTMTYKCPRITE-RQPDDVDCWCNATDTWVTYGTCSQTGEH 200 Query 89 KRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGS 148 +R +RSV++ H L + E W+ S A + + K E W +R+PG+ + L +G+ Sbjct 201 RRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALRHPGFTVIGLFLAHAIGT 260 Query 149 NNGQRRWYFTILLLLVAPAYS 169 + Q+ F ILL+LV P+ + Sbjct 261 SITQKGIIF-ILLMLVTPSMA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Edge Hill virus] Sequence ID: C8XPB2.1 Length: 3401 Range 1: 120 to 281 Score:118 bits(296), Expect:2e-31, Method:Compositional matrix adjust., Identities:57/168(34%), Positives:89/168(52%), Gaps:7/168(4%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 L + G+ L+ V + D+ I G C ++ G C D++ YEC L + Sbjct 120 LHHHGGRYLLNVTHADLGKTFTI-----GSGNCTANIVEAGSWCSDSMEYECVTLAEAEE 174 Query 63 PEDVDCWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRY 121 P+D+DCWC E V V YGRC S+RSRR+ + H + L ++E WL ++ R Sbjct 175 PDDIDCWCRGVERVRVTYGRCKNGLDSRRSRRAAVITAHIDKGLTTRQEKWLSTSMGERQ 234 Query 122 LMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 + + E W++RNP YA ++ +L W +GS+ Q+ L+L + PAYS Sbjct 235 IQRIERWMMRNPFYAAISLLLAWWVGSDIKQKV-LIAFLVLAIGPAYS 281 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 1 Singapore/S275/1990] Sequence ID: P33478.2 Length: 3391 Range 1: 142 to 280 Score:118 bits(295), Expect:2e-31, Method:Compositional matrix adjust., Identities:54/141(38%), Positives:89/141(63%), Gaps:2/141(1%) Query 29 SKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHS 88 S G N C + A+D+G +CEDT+TY+CP++T +P+DVDCWC+ + +V YG C++T Sbjct 142 SVGVNMCTLIAMDLGELCEDTMTYKCPRITEA-EPDDVDCWCNATDTWVTYGTCSQTGEH 200 Query 89 KRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGS 148 +R +RSV++ H L + E W+ S A + + + E W +R+PG+ +A L +G+ Sbjct 201 RRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQRVETWALRHPGFTVIALFLAHAIGT 260 Query 149 NNGQRRWYFTILLLLVAPAYS 169 + Q+ F ILL+LV P+ + Sbjct 261 SITQKGIIF-ILLMLVTPSMA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Uganda/A7094A4/1948] Sequence ID: Q1X880.1 Length: 3412 Range 1: 131 to 285 Score:117 bits(292), Expect:4e-31, Method:Compositional matrix adjust., Identities:60/161(37%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTAEDLGKTF-----SVGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YGRC SKRSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++G NN +R +L+L V PAYS Sbjct 246 LVRNPFFAVTALAIAYLVG-NNKTQRVVIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Angola/14FA/1971] Sequence ID: Q1X881.1 Length: 3412 Range 1: 131 to 285 Score:117 bits(292), Expect:5e-31, Method:Compositional matrix adjust., Identities:60/161(37%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTAEDLGKTF-----SVGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YGRC SKRSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++G+N QR +L+L V PAYS Sbjct 246 LVRNPFFAVTALAIAYLVGNNTTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ethiopia/Couma/1961] Sequence ID: Q074N0.1 Length: 3412 Range 1: 131 to 285 Score:116 bits(291), Expect:6e-31, Method:Compositional matrix adjust., Identities:60/161(37%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTAEDLGKTF-----SLGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YGRC SKRSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHENHGLKTRQEKWMAGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++G NN +R +L+L V PAYS Sbjct 246 LVRNPFFAITALAIAYLVG-NNMTQRVVIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 2 China/D2-04] Sequence ID: P30026.1 Length: 1127 Range 1: 144 to 280 Score:115 bits(288), Expect:1e-30, Method:Compositional matrix adjust., Identities:58/139(42%), Positives:82/139(58%), Gaps:2/139(1%) Query 31 GENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKR 90 G N C + AID G +CEDTITY+CP L N+PED+DCWC++ +V YG T T R Sbjct 144 GVNMCTLMAIDFGELCEDTITYKCPLLRQ-NEPEDIDCWCNSTSTWVTYGTRTTTGEHGR 202 Query 91 SRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIVRNPGYAFLAAILGWMLGSNN 150 +RSV++ H L E W+ S A + + E WI+R+PG+ +AAIL + +G+ + Sbjct 203 EKRSVALVPHVGMGLETGTETWMSSDGAWKRACRMETWILRHPGFTIMAAILAYTIGTTH 262 Query 151 GQRRWYFTILLLLVAPAYS 169 QR IL VAP+ + Sbjct 263 FQRGLIL-ILQTAVAPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Philippines/H87/1956] Sequence ID: P27915.1 Length: 3390 Range 1: 117 to 280 Score:114 bits(284), Expect:5e-30, Method:Compositional matrix adjust., Identities:58/167(35%), Positives:95/167(56%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 L++ G+ M V + ++ S G N C + A+D+G MC+DT+TY+CP +T + Sbjct 117 LTSRDGEPRMIVGKNERGKSLLFKTAS-GINMCTLIAMDLGEMCDDTVTYKCPHITE-VE 174 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG C + +R +RSV++ H L + + W+ + A R + Sbjct 175 PEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQV 234 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 K E W +R+PG+ LA L +G++ Q+ F ILL+LV P+ + Sbjct 235 EKVETWALRHPGFTILALFLAHYIGTSLTQKVVIF-ILLMLVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 China/80-2/1980] Sequence ID: Q99D35.1 Length: 3390 Range 1: 117 to 280 Score:114 bits(284), Expect:5e-30, Method:Compositional matrix adjust., Identities:58/167(35%), Positives:95/167(56%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 L++ G+ M V + ++ S G N C + A+D+G MC+DT+TY+CP +T + Sbjct 117 LTSRDGEPRMIVGKNERGKSLLFKTAS-GINMCTLIAMDLGEMCDDTVTYKCPHITE-VE 174 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG C + +R +RSV++ H L + + W+ + A R + Sbjct 175 PEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQV 234 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 K E W +R+PG+ LA L +G++ Q+ F ILL+LV P+ + Sbjct 235 EKVETWALRHPGFTILALFLAHYIGTSLTQKVVIF-ILLMLVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Sri Lanka/1266/2000] Sequence ID: Q6YMS4.1 Length: 3390 Range 1: 117 to 280 Score:114 bits(284), Expect:6e-30, Method:Compositional matrix adjust., Identities:58/167(35%), Positives:95/167(56%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 L++ G+ M V + ++ S G N C + A+D+G MC+DT+TY+CP +T + Sbjct 117 LTSRDGEPRMIVGKNERGKSLLFKTAS-GINMCTLIAMDLGEMCDDTVTYKCPHITE-VE 174 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG C + +R +RSV++ H L + + W+ + A R + Sbjct 175 PEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQV 234 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 K E W +R+PG+ LA L +G++ Q+ F ILL+LV P+ + Sbjct 235 EKVETWALRHPGFTILALFLAHYIGTSLTQKVVIF-ILLMLVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Martinique/1243/1999] Sequence ID: Q6YMS3.1 Length: 3390 Range 1: 117 to 280 Score:113 bits(283), Expect:8e-30, Method:Compositional matrix adjust., Identities:58/167(35%), Positives:95/167(56%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 L++ G+ M V + ++ S G N C + A+D+G MC+DT+TY+CP +T + Sbjct 117 LTSRDGEPRMIVGKNERGKSLLFKTAS-GINMCTLIAMDLGEMCDDTVTYKCPHITE-VE 174 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG C + +R +RSV++ H L + + W+ + A R + Sbjct 175 PEDIDCWCNLTSTWVTYGTCNQAGERRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQV 234 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 K E W +R+PG+ LA L +G++ Q+ F ILL+LV P+ + Sbjct 235 EKVETWALRHPGFTILALFLAHYIGTSLTQKVVIF-ILLMLVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Dengue virus 3 Singapore/8120/1995] Sequence ID: Q5UB51.1 Length: 3390 Range 1: 117 to 280 Score:112 bits(280), Expect:2e-29, Method:Compositional matrix adjust., Identities:58/167(35%), Positives:94/167(56%), Gaps:3/167(1%) Query 3 LSNFQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGND 62 L++ G+ M V + ++ S G N C + A+D+G MC+DT+TY+CP L + Sbjct 117 LTSRDGEPRMIVGKNERGKSLLFKTAS-GINMCTLIAMDLGEMCDDTVTYKCP-LIAEVE 174 Query 63 PEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYL 122 PED+DCWC+ +V YG C + +R +RSV++ H L + + W+ + A R + Sbjct 175 PEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQV 234 Query 123 MKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 K E W +R+PG+ LA L +G++ Q+ F ILL+LV P+ + Sbjct 235 EKVETWALRHPGFTILALFLAHYIGTSLTQKVVIF-ILLMLVTPSMT 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Banzi virus] Sequence ID: C8XPA8.1 Length: 3393 Range 1: 119 to 272 Score:105 bits(262), Expect:6e-27, Method:Compositional matrix adjust., Identities:58/160(36%), Positives:84/160(52%), Gaps:7/160(4%) Query 11 LMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWC 70 L+ + D ++ + N C V A D+G C D + Y+C L DP+DVDCWC Sbjct 119 LINITKDDAHKLLTLRN-----GNCTVVATDIGNWCPDNVEYDCVTLQDNEDPDDVDCWC 173 Query 71 DN-QEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWI 129 V V YGRC +RS+R+V + H + L KKE WL S+ + K E WI Sbjct 174 YRVNNVRVTYGRCKDGNTPRRSKRAVVITAHLDQGLTTKKETWLGSSHFETQVQKVEKWI 233 Query 130 VRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +RNP YA A ++ W +G N+ ++R +L L + PAY+ Sbjct 234 IRNPTYAIAAILMSWYIG-NSLKQRVVLLLLTLALGPAYA 272 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Wesselsbron virus] Sequence ID: C5H431.1 Length: 3405 Range 1: 127 to 280 Score:104 bits(259), Expect:1e-26, Method:Compositional matrix adjust., Identities:63/163(39%), Positives:87/163(53%), Gaps:12/163(7%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V D+ + +G N C V +D G CED + YEC L+ G +P+D+DCW Sbjct 127 LLLNVTFADVGKTYEV----EGGN-CSVNTLDAGKWCEDYVEYECVTLSEGEEPDDLDCW 181 Query 70 C---DNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C DN V V YGRC + R +V + H + L ++E WL + + L K E Sbjct 182 CYGVDN--VRVTYGRCKSGGSRRSRRSAV-ITPHVDKGLTTRQEKWLPTKIGEQQLQKVE 238 Query 127 NWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 WI+RNP YA A L + +G++N QR ILLL + PAYS Sbjct 239 KWIMRNPLYALGAVALAYFVGTSNVQRV-VIAILLLGIGPAYS 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ivory Coast/1999] Sequence ID: Q6J3P1.1 Length: 3411 Range 1: 131 to 285 Score:104 bits(259), Expect:1e-26, Method:Compositional matrix adjust., Identities:59/161(37%), Positives:86/161(53%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTF-----SVGAGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 LVRNPFFAVTALTIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus strain Ghana/Asibi/1927] Sequence ID: Q6DV88.1 Length: 3411 Range 1: 131 to 285 Score:103 bits(258), Expect:2e-26, Method:Compositional matrix adjust., Identities:59/161(37%), Positives:86/161(53%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTF-----SVGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 LVRNPFFAVTALTIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus isolate Ivory Coast/85-82H/1982] Sequence ID: Q98803.1 Length: 3411 Range 1: 131 to 285 Score:103 bits(258), Expect:2e-26, Method:Compositional matrix adjust., Identities:59/161(37%), Positives:86/161(53%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTF-----SVGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 LVRNPFFAVTALAIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus strain French neurotropic vaccine] Sequence ID: Q89277.2 Length: 3411 Range 1: 131 to 285 Score:103 bits(258), Expect:2e-26, Method:Compositional matrix adjust., Identities:59/161(37%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTF-----SMGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 FVRNPFFAVTALTIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus Trinidad/79A/1979] Sequence ID: Q9YRV3.1 Length: 3411 Range 1: 131 to 285 Score:103 bits(258), Expect:2e-26, Method:Compositional matrix adjust., Identities:59/161(37%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ I G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTFSI-----GTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVTYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 FVRNPFFAVTALTIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Non-structural protein 2A-alpha; Short=NS2A-alpha; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Yellow fever virus 17D] Sequence ID: P03314.1 Length: 3411 Range 1: 131 to 285 Score:103 bits(257), Expect:2e-26, Method:Compositional matrix adjust., Identities:59/161(37%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ S G C ++ Y C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTF-----SVGTGNCTTNILEAKYWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 FVRNPFFAVTALTIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A [Yellow fever virus 1899/81] Sequence ID: P29165.1 Length: 1163 Range 1: 131 to 285 Score:100 bits(249), Expect:2e-25, Method:Compositional matrix adjust., Identities:58/161(36%), Positives:85/161(52%), Gaps:7/161(4%) Query 10 LLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCW 69 LL+ V + D+ S G C ++ C D++ Y CP L+ +P+D+DCW Sbjct 131 LLLNVTSEDLGKTF-----SVGTGNCTTNILEAKNWCPDSMEYNCPNLSPREEPDDIDCW 185 Query 70 CDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENW 128 C E V V YG+C S+RSRR++ + TH L ++E W+ R L K E W Sbjct 186 CYGVENVRVAYGKCDSAGRSRRSRRAIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERW 245 Query 129 IVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 +VRNP +A A + +++GSN QR +L+L V PAYS Sbjct 246 LVRNPFFAVTALAIAYLVGSNMTQRV-VIALLVLAVGPAYS 285 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Omsk hemorrhagic fever virus] Sequence ID: Q7T6D2.1 Length: 3414 Range 1: 125 to 280 Score:97.4 bits(241), Expect:4e-24, Method:Compositional matrix adjust., Identities:51/163(31%), Positives:83/163(50%), Gaps:8/163(4%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G ++ D A + + N + C + A D+G CED+++YEC + G +P DVD Sbjct 125 GTTVIRAEGKDAATQVRVENGT-----CVILATDMGAWCEDSLSYECVTIDQGEEPVDVD 179 Query 68 CWCDN-QEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C N VY++YGRC + + RSRRSV + +H + L + + WL+ +L + E Sbjct 180 CFCRNVDRVYLEYGRCGK-QEGTRSRRSVLIPSHAQKDLTGRGQRWLEGDTIRSHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 W+ +N ++ WM + R LL +APAY+ Sbjct 239 GWVWKNKSLTLAVVVIVWMT-VESAVTRIVIVSALLCLAPAYA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Alkhumra hemorrhagic fever virus] Sequence ID: Q91B85.1 Length: 3416 Range 1: 126 to 281 Score:88.6 bits(218), Expect:4e-21, Method:Compositional matrix adjust., Identities:55/165(33%), Positives:82/165(49%), Gaps:12/165(7%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G +++ D A + + N + C + A D+G C+D+I YEC + G +P DVD Sbjct 126 GDMVIRAEGKDAATQVEVVNGT-----CIILATDMGSWCDDSIMYECVTIDSGEEPVDVD 180 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C E V ++YGRC + RSRRSVS+ H S L + WL +L + E Sbjct 181 CFCRGVERVSLEYGRCGKPV-GGRSRRSVSIPVHAHSDLTGRGHKWLRGDSVKTHLTRVE 239 Query 127 NWIVRNP--GYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 W+ +N AF A + WM+ + R T+ L L AP Y+ Sbjct 240 GWVWKNKLLTMAFCAVV--WMVTDSLPTRFIVITVALCL-APTYA 281 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Kyasanur Forest disease virus] Sequence ID: D7RF80.1 Length: 3416 Range 1: 126 to 281 Score:87.8 bits(216), Expect:7e-21, Method:Compositional matrix adjust., Identities:52/165(32%), Positives:84/165(50%), Gaps:12/165(7%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G +++ D A + + N + C + A D+G C+D+I YEC + G +P DVD Sbjct 126 GNMVIRAEGKDAATQVEVMNGT-----CTILATDMGSWCDDSIMYECVTIDSGEEPVDVD 180 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C E V ++YGRC + R+RRSVS+ H S L + WL +L + E Sbjct 181 CFCKGVERVSLEYGRCGKP-AGGRNRRSVSIPVHAHSDLTGRGHKWLKGDSVKTHLTRVE 239 Query 127 NWIVRNP--GYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 W+ +N AF A + WM+ +++ R+ + L +AP Y+ Sbjct 240 GWVWKNKFLTAAFCAVV--WMV-TDSLPTRFIVITVALCLAPTYA 281 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Louping ill virus] Sequence ID: P22338.2 Length: 3414 Range 1: 125 to 257 Score:87.8 bits(216), Expect:7e-21, Method:Compositional matrix adjust., Identities:44/139(32%), Positives:73/139(52%), Gaps:7/139(5%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G ++ D A + + N + C + A D+G C+D+++YEC + G +P DVD Sbjct 125 GTTVIRAEGRDAATQVRVENGT-----CVILATDMGSWCDDSLSYECVTIEQGEEPVDVD 179 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C N + VY++YGRC + S R+RRSV + TH + L + WL+ +L + E Sbjct 180 CFCRNVDGVYLEYGRCGKQEGS-RTRRSVLIPTHAQGELTGRGRKWLEGDSLRTHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWM 145 W+ +N A + W+ Sbjct 239 GWVWKNKLLALAMVAVVWL 257 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (WESTERN SUBTYPE)] Sequence ID: P14336.4 Length: 3414 Range 1: 125 to 257 Score:87.4 bits(215), Expect:1e-20, Method:Compositional matrix adjust., Identities:43/139(31%), Positives:73/139(52%), Gaps:7/139(5%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G ++ D A + + N + C + A D+G C+D+++YEC + G +P DVD Sbjct 125 GSTVIRAEGKDAATQVRVENGT-----CVILATDMGSWCDDSLSYECVTIDQGEEPVDVD 179 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C N + VY++YGRC + S R+RRSV + +H + L + WL+ +L + E Sbjct 180 CFCRNVDGVYLEYGRCGKQEGS-RTRRSVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWM 145 W+ +N A + W+ Sbjct 239 GWVWKNKLLALAMVTVVWL 257 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (strain HYPR)] Sequence ID: Q01299.1 Length: 3414 Range 1: 125 to 257 Score:86.7 bits(213), Expect:2e-20, Method:Compositional matrix adjust., Identities:43/139(31%), Positives:73/139(52%), Gaps:7/139(5%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G ++ D A + + N + C + A D+G C+D+++YEC + G +P DVD Sbjct 125 GSTVIRAEGKDAATQVRVENGT-----CVILATDMGSWCDDSLSYECVTIDQGEEPVDVD 179 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C N + VY++YGRC + S R+RRSV + +H + L + WL+ +L + E Sbjct 180 CFCRNVDGVYLEYGRCGKQEGS-RTRRSVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWM 145 W+ +N A + W+ Sbjct 239 GWVWKNRLLALAMVTVVWL 257 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Tick-borne powassan virus (strain lb)] Sequence ID: Q04538.1 Length: 3415 Range 1: 122 to 278 Score:86.7 bits(213), Expect:2e-20, Method:Compositional matrix adjust., Identities:49/164(30%), Positives:82/164(50%), Gaps:8/164(4%) Query 7 QGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDV 66 +G ++M + D A + + N + C + A D+G CED+ITY C + +P DV Sbjct 122 EGYMVMRASGRDAASQVRVQNGT-----CVILATDMGEWCEDSITYSCVTIDQEEEPVDV 176 Query 67 DCWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKT 125 DC+C + V ++YGRC R S R +RSV + TH + +V + AWL ++ + Sbjct 177 DCFCRGVDRVKLEYGRCGRQAGS-RGKRSVVIPTHAQKDMVGRGHAWLKGDNIRDHVTRV 235 Query 126 ENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 E W+ +N L W++ ++ R +L L + P Y+ Sbjct 236 EGWMWKNKLLTAAIVALAWLM-VDSWMARVTVILLALSLGPVYA 278 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=Non-structural protein 5 [Tick-borne encephalitis virus (STRAIN SOFJIN)] Sequence ID: P07720.3 Length: 3412 Range 1: 125 to 257 Score:85.1 bits(209), Expect:7e-20, Method:Compositional matrix adjust., Identities:43/139(31%), Positives:71/139(51%), Gaps:7/139(5%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G ++ D A + + N + C + A D+G C+D++TYEC + G +P DVD Sbjct 125 GTTVIRAEGKDAATQVRVENGT-----CVILATDMGSWCDDSLTYECVTIDQGEEPVDVD 179 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C C N + VY++YGRC + S R+RRSV + +H + L + WL+ +L + E Sbjct 180 CSCRNVDGVYLEYGRCGKQEGS-RTRRSVLIPSHAQGDLTGRGHKWLEGDSLRTHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWM 145 W+ +N + W+ Sbjct 239 GWVWKNKVLTLAVIAVVWL 257 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E [Langat virus (strain Yelantsev)] Sequence ID: P29838.2 Length: 776 Range 1: 125 to 280 Score:78.2 bits(191), Expect:2e-17, Method:Compositional matrix adjust., Identities:47/163(29%), Positives:82/163(50%), Gaps:8/163(4%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G +++ D A + + N + C + A D+G C+D++ YEC + G +P DVD Sbjct 125 GSMVIRAEGRDAATQVRVENGT-----CVILATDMGSWCDDSLAYECVTIDQGEEPVDVD 179 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C E V ++YGRC R RSRRSV + +H + L + WL+ +L + E Sbjct 180 CFCRGVEKVTLEYGRCGRRE-GSRSRRSVLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 W+ +N + ++ W++ + R ++ L + PAY+ Sbjct 239 GWVWKNKLFTLSLVMVAWLM-VDGLLPRILIVVVALALVPAYA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Capsid protein C; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Langat virus (strain TP21)] Sequence ID: P29837.2 Length: 3414 Range 1: 125 to 280 Score:77.8 bits(190), Expect:2e-17, Method:Compositional matrix adjust., Identities:47/163(29%), Positives:82/163(50%), Gaps:8/163(4%) Query 8 GKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVD 67 G +++ D A + + N + C + A D+G C+D++ YEC + G +P DVD Sbjct 125 GSMVIRAEGRDAATQVRVENGT-----CVILATDMGSWCDDSLAYECVTIDQGEEPVDVD 179 Query 68 CWCDNQE-VYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTE 126 C+C E V ++YGRC R RSRRSV + +H + L + WL+ +L + E Sbjct 180 CFCRGVEKVTLEYGRCGRRE-GSRSRRSVLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVE 238 Query 127 NWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 W+ +N + ++ W++ + R ++ L + PAY+ Sbjct 239 GWVWKNKLFTLSLVMVAWLM-VDGLLPRILIVVVALALVPAYA 280 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1 [Dengue virus 2 Thailand/TH-36/1958] Sequence ID: P29984.1 Length: 555 Range 1: 1 to 49 Score:46.6 bits(109), Expect:1e-06, Method:Compositional matrix adjust., Identities:20/50(40%), Positives:33/50(66%), Gaps:1/50(2%) Query 120 RYLMKTENWIVRNPGYAFLAAILGWMLGSNNGQRRWYFTILLLLVAPAYS 169 ++ + E WI+R+PG+ +AAIL + +G+ + QR F ILL VAP+ + Sbjct 1 KHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRALIF-ILLTAVAPSMT 49 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein C; AltName: Full=Capsid protein; AltName: Full=Core protein; Contains: RecName: Full=Protein prM; Contains: RecName: Full=Peptide pr; Contains: RecName: Full=Small envelope protein M; AltName: Full=Matrix protein; Contains: RecName: Full=Envelope protein E; Contains: RecName: Full=Non-structural protein 1; Short=NS1; Contains: RecName: Full=Non-structural protein 2A; Short=NS2A; Contains: RecName: Full=Serine protease subunit NS2B; AltName: Full=Flavivirin protease NS2B regulatory subunit; AltName: Full=Non-structural protein 2B; Contains: RecName: Full=Serine protease NS3; AltName: Full=Flavivirin protease NS3 catalytic subunit; AltName: Full=Non-structural protein 3; Contains: RecName: Full=Non-structural protein 4A; Short=NS4A; Contains: RecName: Full=Peptide 2k; Contains: RecName: Full=Non-structural protein 4B; Short=NS4B; Contains: RecName: Full=RNA-directed RNA polymerase NS5; AltName: Full=NS5 [Cell fusing agent virus] Sequence ID: P33515.1 Length: 3341 Range 1: 152 to 238 Score:36.2 bits(82), Expect:0.005, Method:Compositional matrix adjust., Identities:27/105(26%), Positives:43/105(40%), Gaps:19/105(18%) Query 6 FQGKLLMTVNNTDIADVIVIPNPSKGENRCWVRAIDVGYMCEDTITYECPKLT-MGNDPE 64 F+G+ N TD ++ +P + CW + +T +CPK+T + D E Sbjct 152 FEGE----TNRTDYLHLLKLP-----ADGCWSGIL---------VTKKCPKVTDLAKDLE 193 Query 65 DVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKK 109 DC E ++Y RC + KRSR E ++ K Sbjct 194 STDCGSTWTEFTLRYRRCVVKKREKRSREPPKADLLAEMEIIAFK 238