##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##bcftoolsVersion=1.9+htslib-1.9
##bcftoolsCommand=mpileup --threads 12 -f ../chr7.fna marked.bam
##reference=file://../chr7.fna
##contig=<ID=NC_000007.14,length=159345973>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPB,Number=1,Type=Float,Description="Mann-Whitney U test of Read Position Bias (bigger is better)">
##INFO=<ID=MQB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality Bias (bigger is better)">
##INFO=<ID=BQB,Number=1,Type=Float,Description="Mann-Whitney U test of Base Quality Bias (bigger is better)">
##INFO=<ID=MQSB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality vs Strand Bias (bigger is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric.">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=ICB,Number=1,Type=Float,Description="Inbreeding Coefficient Binomial test (bigger is better)">
##INFO=<ID=HOB,Number=1,Type=Float,Description="Bias in the number of HOMs number (smaller is better)">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Average mapping quality">
##bcftools_callVersion=1.9+htslib-1.9
##bcftools_callCommand=call -mv -o 1.vcf; Date=Fri Dec 11 18:53:59 2020
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	marked.bam
NC_000007.14	10367	.	G	A	19.2129	.	DP=3;VDB=0.52;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=1,0,2,0;MQ=48	GT:PL	0/1:52,0,31
NC_000007.14	10479	.	C	T	127	.	DP=6;VDB=0.923066;SGB=-0.616816;MQSB=0.574341;MQ0F=0;AC=2;AN=2;DP4=0,0,3,3;MQ=45	GT:PL	1/1:157,18,0
NC_000007.14	10526	.	G	T	22.8425	.	DP=7;VDB=0.450604;SGB=-0.511536;RPB=0.810265;MQB=0.202566;MQSB=0.405132;BQB=0.810265;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=2,2,2,1;MQ=45	GT:PL	0/1:56,0,126
NC_000007.14	10609	.	G	A	17.7395	.	DP=7;VDB=0.6;SGB=-0.453602;RPB=0.2;MQB=0.4;MQSB=0.810265;BQB=0.8;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=2,3,2,0;MQ=49	GT:PL	0/1:51,0,139
NC_000007.14	10613	.	A	C	17.5799	.	DP=7;VDB=0.6;SGB=-0.453602;RPB=0.6;MQB=0.3;MQSB=1.01283;BQB=0.8;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=2,3,2,0;MQ=51	GT:PL	0/1:51,0,152
NC_000007.14	10706	.	T	C	36.1269	.	DP=8;VDB=0.318564;SGB=-0.511536;RPB=0.900802;MQB=0.900802;MQSB=0.450401;BQB=0.450401;MQ0F=0;ICB=1;HOB=0.5;AC=1;AN=2;DP4=2,3,3,0;MQ=51	GT:PL	0/1:69,0,135