Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.3.3, (Release date: Sun Feb 7 15:39:52 2021 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE sequences.fa
Database contains 1 sequences, 26041 residues
MOTIFS motifs.meme (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 6 | ACACCA |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
1 | NC_016991.1 | - | 1176 | 1181 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 1374 | 1379 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 1503 | 1508 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 4239 | 4244 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 4338 | 4343 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 5586 | 5591 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 7278 | 7283 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 8352 | 8357 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 8529 | 8534 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 8888 | 8893 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 9614 | 9619 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 9810 | 9815 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 10401 | 10406 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 11639 | 11644 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 11939 | 11944 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 12365 | 12370 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 13607 | 13612 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 17069 | 17074 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 18221 | 18226 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 20776 | 20781 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 21601 | 21606 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 21657 | 21662 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 66 | 71 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 243 | 248 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 258 | 263 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 977 | 982 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 1942 | 1947 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 2155 | 2160 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 3927 | 3932 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 4321 | 4326 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 6717 | 6722 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 7951 | 7956 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 18003 | 18008 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 19233 | 19238 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 19901 | 19906 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 20751 | 20756 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 20979 | 20984 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 22886 | 22891 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 23130 | 23135 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 24101 | 24106 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 25159 | 25164 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | + | 25447 | 25452 | 0.000237 | 0.29 | ACACCA | |
1 | NC_016991.1 | - | 781 | 786 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 3681 | 3686 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 3831 | 3836 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 4579 | 4584 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 4810 | 4815 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 4989 | 4994 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 5848 | 5853 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 7224 | 7229 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 8771 | 8776 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 8854 | 8859 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 9027 | 9032 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 9555 | 9560 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 10293 | 10298 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 11104 | 11109 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 11470 | 11475 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 11491 | 11496 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 11811 | 11816 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 12140 | 12145 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 13350 | 13355 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 14224 | 14229 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 14993 | 14998 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 15286 | 15291 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 15532 | 15537 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 16805 | 16810 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 17133 | 17138 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 18385 | 18390 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 18872 | 18877 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 19860 | 19865 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 20266 | 20271 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 20968 | 20973 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 21113 | 21118 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 21499 | 21504 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 21901 | 21906 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 23092 | 23097 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 23679 | 23684 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 24106 | 24111 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 24151 | 24156 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 24246 | 24251 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 24994 | 24999 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | + | 25039 | 25044 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 25625 | 25630 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 26006 | 26011 | 0.000526 | 0.322 | AAACCA | |
1 | NC_016991.1 | - | 1997 | 2002 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | + | 6237 | 6242 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | - | 8159 | 8164 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | - | 11293 | 11298 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | - | 13583 | 13588 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | + | 14181 | 14186 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | + | 19368 | 19373 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | - | 19642 | 19647 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | + | 19705 | 19710 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | + | 20734 | 20739 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | - | 22519 | 22524 | 0.000763 | 0.408 | AGACCA | |
1 | NC_016991.1 | + | 24052 | 24057 | 0.000763 | 0.408 | AGACCA |
Command line:
fimo --oc . --verbosity 1 --thresh 0.001 motifs.meme sequences.fa
Settings:
output_directory = . | MEME file name = motifs.meme | sequence file name = sequences.fa |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.