Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.3.3, (Release date: Sun Feb 7 15:39:52 2021 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE sequences.fa
Database contains 1 sequences, 26223 residues
MOTIFS motifs.meme (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 6 | ACACCA |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
1 | NC_016996.1 | - | 639 | 644 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 693 | 698 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 1347 | 1352 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 1761 | 1766 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 2253 | 2258 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 2628 | 2633 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 3207 | 3212 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 4029 | 4034 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 5085 | 5090 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 5130 | 5135 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 6087 | 6092 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 6336 | 6341 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 6495 | 6500 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 6579 | 6584 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 6990 | 6995 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 7794 | 7799 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 8241 | 8246 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 8600 | 8605 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 8659 | 8664 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 10113 | 10118 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 11237 | 11242 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 11351 | 11356 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 13319 | 13324 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 13355 | 13360 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 15875 | 15880 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 16778 | 16783 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 18485 | 18490 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 20149 | 20154 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 21400 | 21405 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 21466 | 21471 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 23369 | 23374 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | - | 24768 | 24773 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 63 | 68 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 1918 | 1923 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 7663 | 7668 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 8026 | 8031 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 18939 | 18944 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 20199 | 20204 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 20229 | 20234 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 20927 | 20932 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 22697 | 22702 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 22938 | 22943 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 23727 | 23732 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 24122 | 24127 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 24362 | 24367 | 0.000237 | 0.268 | ACACCA | |
1 | NC_016996.1 | + | 2128 | 2133 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 2976 | 2981 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 3962 | 3967 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 4666 | 4671 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 5557 | 5562 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 5868 | 5873 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 6468 | 6473 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 7034 | 7039 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 7871 | 7876 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 9277 | 9282 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 9326 | 9331 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 9542 | 9547 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 10388 | 10393 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 10816 | 10821 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 11523 | 11528 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 11538 | 11543 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 12548 | 12553 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 13376 | 13381 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 14323 | 14328 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 14503 | 14508 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 14705 | 14710 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 16079 | 16084 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 16842 | 16847 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 16868 | 16873 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 16921 | 16926 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 17501 | 17506 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 17606 | 17611 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 17961 | 17966 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 18025 | 18030 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 19029 | 19034 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 19984 | 19989 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 20026 | 20031 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 20503 | 20508 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 20611 | 20616 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 20755 | 20760 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 20773 | 20778 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 21390 | 21395 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 21456 | 21461 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 21880 | 21885 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 21964 | 21969 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 23572 | 23577 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | + | 24373 | 24378 | 0.000526 | 0.307 | AAACCA | |
1 | NC_016996.1 | - | 6264 | 6269 | 0.000763 | 0.417 | AGACCA | |
1 | NC_016996.1 | + | 15244 | 15249 | 0.000763 | 0.417 | AGACCA | |
1 | NC_016996.1 | + | 19909 | 19914 | 0.000763 | 0.417 | AGACCA | |
1 | NC_016996.1 | - | 23024 | 23029 | 0.000763 | 0.417 | AGACCA | |
1 | NC_016996.1 | + | 24650 | 24655 | 0.000763 | 0.417 | AGACCA | |
1 | NC_016996.1 | + | 25120 | 25125 | 0.000763 | 0.417 | AGACCA |
Command line:
fimo --oc . --verbosity 1 --thresh 0.001 motifs.meme sequences.fa
Settings:
output_directory = . | MEME file name = motifs.meme | sequence file name = sequences.fa |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.