Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.3.3, (Release date: Sun Feb 7 15:39:52 2021 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE sequences.fa
Database contains 1 sequences, 26227 residues
MOTIFS motifs.meme (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 6 | ACACCA |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
1 | NC_016995.1 | - | 440 | 445 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 1474 | 1479 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 5306 | 5311 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 6893 | 6898 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 8036 | 8041 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 8592 | 8597 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 10052 | 10057 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 10057 | 10062 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 16797 | 16802 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 18975 | 18980 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 19053 | 19058 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 19326 | 19331 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 19374 | 19379 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 20292 | 20297 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 23741 | 23746 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | - | 24496 | 24501 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 60 | 65 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 4056 | 4061 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 11073 | 11078 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 16333 | 16338 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 16748 | 16753 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 16814 | 16819 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 19042 | 19047 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 20267 | 20272 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 20312 | 20317 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 20404 | 20409 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 22380 | 22385 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 23200 | 23205 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 23631 | 23636 | 0.000237 | 0.424 | ACACCA | |
1 | NC_016995.1 | + | 91 | 96 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 1516 | 1521 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 1714 | 1719 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 3703 | 3708 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 3774 | 3779 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 5206 | 5211 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 5376 | 5381 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 7081 | 7086 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 7157 | 7162 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 9183 | 9188 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 9232 | 9237 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 10223 | 10228 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 11644 | 11649 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 12133 | 12138 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 13023 | 13028 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 13582 | 13587 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 16180 | 16185 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 16609 | 16614 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 18742 | 18747 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 18764 | 18769 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 19721 | 19726 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 21675 | 21680 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 22359 | 22364 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 22605 | 22610 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 23682 | 23687 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 23811 | 23816 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 23970 | 23975 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 24609 | 24614 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 24880 | 24885 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | + | 25037 | 25042 | 0.000526 | 0.462 | AAACCA | |
1 | NC_016995.1 | - | 492 | 497 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 2413 | 2418 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 3438 | 3443 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 4556 | 4561 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | + | 5639 | 5644 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 7997 | 8002 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 8491 | 8496 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 15654 | 15659 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | + | 17674 | 17679 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | + | 18809 | 18814 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 19197 | 19202 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 19572 | 19577 | 0.000763 | 0.549 | AGACCA | |
1 | NC_016995.1 | - | 25163 | 25168 | 0.000763 | 0.549 | AGACCA |
Command line:
fimo --oc . --verbosity 1 --thresh 0.001 motifs.meme sequences.fa
Settings:
output_directory = . | MEME file name = motifs.meme | sequence file name = sequences.fa |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.