Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.3.3, (Release date: Sun Feb 7 15:39:52 2021 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE db/ucsc_hg38.fna
Database contains 455 sequences, 3209286105 residues
MOTIFS motifs.meme (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1 | 6 | ACACCA |
Random model letter frequencies (db/ucsc_hg38.fna.bfile):
A 0.295 C 0.205 G 0.205 T 0.295
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|
Command line:
fimo --oc . --verbosity 1 --bgfile db/ucsc_hg38.fna.bfile --thresh 1.0 motifs.meme db/ucsc_hg38.fna
Settings:
output_directory = . | MEME file name = motifs.meme | sequence file name = db/ucsc_hg38.fna |
background file name = db/ucsc_hg38.fna.bfile | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 1 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.