# fasta34 FASTA searches a protein or DNA sequence data bank version 3.4t25 Nov 12, 2004 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 U00096, 77 nt vs bs_genome.fasta library 22587 residues in 1 sequences Altschul/Gish params: n0: 77 Lambda: 0.192 K: 0.177 H: 0.360 FASTA (3.47 Mar 2004) function [optimized, +5/-4 matrix (5:-4)] ktup: 6 join: 45, opt: 30, open/ext: -12/-4, width: 16 The best scores are: opt bits E(1) AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 145 43.5 1.4e-07 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [f] 45 15.8 2 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 45 15.8 2 AL009126_GR|AL009126_GR Bacillus subtilis (str (4214630) [r] 45 15.8 2 >>AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) (4214630 nt) initn: 61 init1: 61 opt: 145 Z-score: 173.8 bits: 43.5 E(): 1.4e-07 banded Smith-Waterman score: 145; 68.831% identity (68.831% similar) in 77 nt overlap (2-77:11463-11538) 10 20 30 U00096 CGGCGAGTAGCGCAGCTTGGTAGCGCAACTG ::: ::::: ::::: : ::: :: : AL0091 GGAACTTTGTTCCTTGAATAAGTTAAGATGGGCCTGTAGCTCAGCTGGTTAGAGC-GCAC 11440 11450 11460 11470 11480 11490 40 50 60 70 U00096 GTTTGGGACCAGTG-GGTCGGAGGTTCGAATCCTCTCTCGCCGACCA : :: : ::: :::::: ::::::: ::: ::: ::: :::: AL0091 GCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTCAGGCCCACCATCTTATATAACGG 11500 11510 11520 11530 11540 11550 AL0091 GGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCC 11560 11570 11580 11590 11600 11610 77 residues in 1 query sequences 22587 residues in 1 library sequences Scomplib [34t25] start: Sat Sep 30 15:14:32 2006 done: Sat Sep 30 15:16:03 2006 Total Scan time: 0.020 Total Display time: 0.000 Function used was FASTA [version 3.4t25 Nov 12, 2004]