MEGABLAST 2.2.10 [Oct-19-2004] Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: bs 1 sequences; 4,214,630 total letters Searching. done Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome. (77 letters) Score E Sequences producing significant alignments: (bits) Value AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosom... 64 1e-11 >AL009126_GR|AL009126_GR Bacillus subtilis (strain 168) chromosome, complete sequence. Length = 4214630 Score = 63.9 bits (32), Expect = 1e-11 Identities = 65/75 (86%), Gaps = 6/75 (8%) Strand = Plus / Plus Query: 6 agtagcgcagcttggtagcgcaac-tggtttgggacca-gtgggtcggaggttcgaatcc 63 |||||| ||||||||||| || || ||||||||||||| | |||||| |||||||||||| Sbjct: 166172 agtagctcagcttggtagagc-acatggtttgggaccatg-gggtcgcaggttcgaatcc 166229 Query: 64 tctc-tcgccgacca 77 | || || ||||||| Sbjct: 166230 tgtcttc-ccgacca 166243 Database: bs Posted date: Sep 30, 2006 1:58 PM Number of letters in database: 4,214,630 Number of sequences in database: 1 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 0, Extension: 0 Number of Hits to DB: 22 Number of Sequences: 1 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 1000000.0: 1 Number of HSP's better than 1000000.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 77 length of database: 4,214,630 effective HSP length: 15 effective length of query: 62 effective length of database: 4,214,615 effective search space: 261306130 effective search space used: 0 S2: 4 ( 8.4 bits)