RID: 3JUJDE44016 Job Title:POLN_EEEV8 Q306W8 Polyprotein P1234 (P1234) Program: BLASTP Query: POLN_EEEV8 Q306W8 Polyprotein P1234 (P1234) ID: lcl|Query_10732940(amino acid) Length: 794 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374597 1667 1667 100% 0.0 100.00 2474 Q306W8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374596 1635 1635 100% 0.0 96.98 2471 Q306W6.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Eastern equi... NA 374598 1585 1585 100% 0.0 93.20 2494 Q4QXJ8.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Western equi... NA 11039 1405 1405 100% 0.0 83.63 2467 P13896.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11038 1222 1222 100% 0.0 72.51 2493 P27282.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36385 1221 1221 100% 0.0 72.26 2493 P36328.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36382 1217 1217 100% 0.0 72.26 2485 P36327.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 11036 1214 1214 100% 0.0 72.26 2497 Q8V294.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Venezuelan e... NA 36384 1204 1204 100% 0.0 71.50 2499 Q9WJC7.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Semliki Fore... NA 11033 954 954 100% 0.0 58.43 2432 P08411.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sagiyama virus NA 59303 951 951 100% 0.0 58.07 2467 Q9JGL0.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Getah virus NA 59300 948 948 100% 0.0 57.95 2467 Q5Y389.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ross river v... NA 11031 944 944 100% 0.0 57.45 2480 P13887.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Mayaro virus... NA 374990 939 939 100% 0.0 57.86 2437 Q8QZ73.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371094 932 932 97% 0.0 58.01 2474 Q8JUX6.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Chikungunya ... NA 371095 924 924 97% 0.0 57.49 2474 Q5XXP4.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Barmah Fores... NA 11020 918 918 99% 0.0 57.45 2411 P87515.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Igbo Ora virus NA 79899 916 916 99% 0.0 55.74 2513 O90370.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 374989 915 915 99% 0.0 55.61 2513 O90368.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... O'nyong-nyon... NA 11028 914 914 99% 0.0 55.61 2514 P13886.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Ockelbo virus NA 31699 879 879 99% 0.0 55.17 2515 P27283.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sindbis virus NA 11034 873 873 99% 0.0 54.79 2513 P03317.2 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Aura virus NA 44158 816 816 98% 0.0 53.01 2499 Q86924.3 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Salmon pancr... NA 84589 620 620 98% 0.0 42.13 2601 Q8JJX1.1 RecName: Full=Polyprotein P1234; Short=P1234; AltName:... Sleeping dis... NA 78540 612 612 98% 0.0 41.94 2593 Q8QL53.1 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138662 77.4 77.4 31% 3e-13 27.72 1612 Q84133.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Odontoglossu... NA 138661 75.1 75.1 33% 2e-12 27.56 1612 P89659.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Tobacco mild... NA 12241 58.9 58.9 33% 2e-07 25.71 1609 P18339.2 RecName: Full=Replicase large subunit; AltName: Full=183 kDa... Turnip vein-... NA 29272 55.8 55.8 33% 1e-06 24.46 1601 Q88920.1 RecName: Full=Replicase large subunit; AltName: Full=182 kDa... Youcai mosai... NA 228578 52.8 52.8 32% 1e-05 24.44 1597 Q66220.2 Alignments: >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-3.0815)] Sequence ID: Q306W8.3 Length: 2474 Range 1: 534 to 1327 Score:1667 bits(4316), Expect:0.0, Method:Compositional matrix adjust., Identities:794/794(100%), Positives:794/794(100%), Gaps:0/794(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY Sbjct 594 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 653 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR Sbjct 834 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 1013 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 1133 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 1193 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL Sbjct 1194 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 1313 Query 781 NNIYQGSTQYEAGR 794 NNIYQGSTQYEAGR Sbjct 1314 NNIYQGSTQYEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain PE-0.0155)] Sequence ID: Q306W6.3 Length: 2471 Range 1: 534 to 1327 Score:1635 bits(4233), Expect:0.0, Method:Compositional matrix adjust., Identities:770/794(97%), Positives:789/794(99%), Gaps:0/794(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRRHIKVTTYPGEE IGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 KVEPYHGRV+VPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGA+NTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 KVLRS EA+SEYVFDIDA+KCVKKA+AGPMCLVG+LVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KVLRSGEAESEYVFDIDAKKCVKKAEAGPMCLVGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMD+AARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDVAARTVDSVLLN 773 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 TEVYHKSISRRCT+TVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKP +DDIILTCFR Sbjct 834 TEVYHKSISRRCTRTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPLKDDIILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIM+R+LETPA+SDVYQNKVHVCWAK Sbjct 954 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMKRVLETPANSDVYQNKVHVCWAK 1013 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGR+ADVRTNTI+DY+P+INVV Sbjct 1074 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRVADVRTNTIRDYNPMINVV 1133 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 PLNRRLPHSLVVSHRYTGDGNYSQLLSKL GKT+LVIGTPI+VPGKRVETLGPGPQCTYK Sbjct 1134 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLTGKTILVIGTPINVPGKRVETLGPGPQCTYK 1193 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 ADLDLGIPS IGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL Sbjct 1194 ADLDLGIPSMIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 1253 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLS+VL Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSVVL 1313 Query 781 NNIYQGSTQYEAGR 794 NNIYQGSTQYEAGR Sbjct 1314 NNIYQGSTQYEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Eastern equine encephalitis virus (strain Florida 91-469)] Sequence ID: Q4QXJ8.3 Length: 2494 Range 1: 534 to 1327 Score:1585 bits(4104), Expect:0.0, Method:Compositional matrix adjust., Identities:740/794(93%), Positives:779/794(98%), Gaps:0/794(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPRRHIKVTTYPGEE IGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRRHIKVTTYPGEEMIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 KVEPYHGRV+VPSGTAIPI DFQALSESATIV+NEREFVNRYLHHIA+NGGA+NTDEEYY Sbjct 594 KVEPYHGRVIVPSGTAIPILDFQALSESATIVFNEREFVNRYLHHIAVNGGALNTDEEYY 653 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 KV++S+E DSEYVFDIDA+KCVKK DAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KVVKSTETDSEYVFDIDAKKCVKKGDAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENC EIIKDVKRMRGMDIAARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCMEIIKDVKRMRGMDIAARTVDSVLLN 773 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GVKH VDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 774 GVKHSVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 833 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 TEVYHKSISRRCTKTVT+IVSTLFYDKRMRTVNPC+DKIIIDTTSTTKP +DDIILTCFR Sbjct 834 TEVYHKSISRRCTKTVTSIVSTLFYDKRMRTVNPCNDKIIIDTTSTTKPLKDDIILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTA YPG F+ATLEEWQAEHDAIM +ILETPASSDV+QNKV+VCWAK Sbjct 954 VWKTLAGDPWIKTLTASYPGNFTATLEEWQAEHDAIMAKILETPASSDVFQNKVNVCWAK 1013 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 ALEPVLATANITLTRSQWETIPAFKDDKA+SPEMALNF CTRFFGVDIDSGLFSAPTVPL Sbjct 1014 ALEPVLATANITLTRSQWETIPAFKDDKAYSPEMALNFFCTRFFGVDIDSGLFSAPTVPL 1073 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 TYTNEHWDNSPGPN YGLCMRTAKELARRYPCILKAVDTGR+ADVRT+TIKDY+PLINVV Sbjct 1074 TYTNEHWDNSPGPNMYGLCMRTAKELARRYPCILKAVDTGRVADVRTDTIKDYNPLINVV 1133 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 PLNRRLPHSLVV+HRYTG+G+YSQL++K+ GKTVLV+GTP+++PGKRVETLGP PQCTYK Sbjct 1134 PLNRRLPHSLVVTHRYTGNGDYSQLVTKMTGKTVLVVGTPMNIPGKRVETLGPSPQCTYK 1193 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 A+LDLGIP+ +GKYDIIF+NVRTPY+HHHYQQCEDHAIHHSMLTRKAVDHLNKGGTC+AL Sbjct 1194 AELDLGIPAALGKYDIIFINVRTPYRHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCIAL 1253 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHL+DQD+LS+VL Sbjct 1254 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLQDQDRLSVVL 1313 Query 781 NNIYQGSTQYEAGR 794 NNIYQGSTQ+EAGR Sbjct 1314 NNIYQGSTQHEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Western equine encephalitis virus] Sequence ID: P13896.3 Length: 2467 Range 1: 534 to 1327 Score:1405 bits(3636), Expect:0.0, Method:Compositional matrix adjust., Identities:664/794(84%), Positives:733/794(92%), Gaps:0/794(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR HI+VT+YPGEE IGSYA+LSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY Sbjct 534 GSVETPRGHIRVTSYPGEEKIGSYAILSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 593 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 KVEPYHG+V+VP GTA+P+ DFQALSESATIV+NEREFVNRYLHHIAINGGA+NTDEEYY Sbjct 594 KVEPYHGKVIVPEGTAVPVQDFQALSESATIVFNEREFVNRYLHHIAINGGALNTDEEYY 653 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 K +++ + DSEYVFDIDARKCVK+ DAGP+CL G+LVDPPFHEFAYESLKTRPAAPHKVP Sbjct 654 KTVKTQDTDSEYVFDIDARKCVKREDAGPLCLTGDLVDPPFHEFAYESLKTRPAAPHKVP 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DV+RMR MD+AARTVDSVLLN Sbjct 714 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVRRMRRMDVAARTVDSVLLN 773 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 GVKHPV+TLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNH+IC Sbjct 774 GVKHPVNTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHDIC 833 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 TEVYHKSISRRCT+TVTAIVSTLFYDKRM+TVNPC+DKIIIDTT TTKP +DD+ILTCFR Sbjct 834 TEVYHKSISRRCTQTVTAIVSTLFYDKRMKTVNPCADKIIIDTTGTTKPHKDDLILTCFR 893 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLY+QTSEHVNVLLTRTEKRI Sbjct 894 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYSQTSEHVNVLLTRTEKRI 953 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+A+L++WQ EHDAIM R+L+ P ++DV+QNKV+VCWAK Sbjct 954 VWKTLAGDPWIKTLTAKYPGDFTASLDDWQREHDAIMARVLDKPQTADVFQNKVNVCWAK 1013 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 ALEPVLATANI LTR QWET+ FK D+A+SPEMALNF CTRFFGVD+DSGLFSAPTV L Sbjct 1014 ALEPVLATANIVLTRQQWETLHPFKHDRAYSPEMALNFFCTRFFGVDLDSGLFSAPTVAL 1073 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 TY ++HWDNSPG N YGL AKEL+RRYPCI KAVDTGR+AD+R NTIKDYSP INVV Sbjct 1074 TYRDQHWDNSPGKNMYGLNREVAKELSRRYPCITKAVDTGRVADIRNNTIKDYSPTINVV 1133 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 PLNRRLPHSL+V H+ G ++S LSK+ GK+VLVIG PIS+PGK+VE++GP P T + Sbjct 1134 PLNRRLPHSLIVDHKGQGTTDHSGFLSKMKGKSVLVIGDPISIPGKKVESMGPLPTNTIR 1193 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 DLDLGIPS +GKYDIIFVNVRTPY++HHYQQCEDHAIHHSMLT KAV HLN GGTCVA+ Sbjct 1194 CDLDLGIPSHVGKYDIIFVNVRTPYRNHHYQQCEDHAIHHSMLTCKAVHHLNTGGTCVAI 1253 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYG ADRATENII+AVARSFRF+RVCQPK ENTEV FVFFGKDNGNH DQD+L +VL Sbjct 1254 GYGLADRATENIITAVARSFRFTRVCQPKNTAENTEVLFVFFGKDNGNHTHDQDRLGVVL 1313 Query 781 NNIYQGSTQYEAGR 794 +NIYQGST+YEAGR Sbjct 1314 DNIYQGSTRYEAGR 1327 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Trinidad donkey)] Sequence ID: P27282.3 Length: 2493 Range 1: 536 to 1328 Score:1222 bits(3163), Expect:0.0, Method:Compositional matrix adjust., Identities:575/793(73%), Positives:665/793(83%), Gaps:0/793(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL+CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 K ++ SE D EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 T+V+HKSISRRCTK+VT++VSTLFYDK+MRT NP KI+IDTT +TKP++DD+ILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKKMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE RI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTA YPG F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 AL PVL TA I +T QW T+ F+ DKA S E+ LN LC RFFG+D+DSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR+ D+ T T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 P+NRRLPH+LV+ H ++S +SKL G+TVLV+G +SVPGK V+ L P+ T++ Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEATFR 1195 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 A LDLGIP + KYDIIFVNVRTPYK+HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1196 ARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYG ADRA+E+II A+AR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 NNIYQGSTQYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain P676)] Sequence ID: P36328.2 Length: 2493 Range 1: 536 to 1328 Score:1221 bits(3160), Expect:0.0, Method:Compositional matrix adjust., Identities:573/793(72%), Positives:665/793(83%), Gaps:0/793(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL+CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 K ++ SE D EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 T+V+HKSISRRCTK+VT++VSTLFYDKRMRT NP KI+IDTT +TKP++DD+ILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIVIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE RI Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIK LTA YPG F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 956 VWKTLAGDPWIKILTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 AL PVL TA I +T QW T+ F+ DKA S E+ LN LC RFFG+D+DSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR+ D+ T T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 P+NRRLPH+LV+ H ++S +SKL G+TVLV+G +SVPGK+V+ L P+ T++ Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKKVDWLSDQPEATFR 1195 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 A LDLGIP + KYDI+F+NVRTPYK+HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1196 ARLDLGIPGDVPKYDIVFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYG ADRA+E+II A+AR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSHEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 NNIYQGSTQYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain 3880)] Sequence ID: P36327.3 Length: 2485 Range 1: 536 to 1328 Score:1217 bits(3150), Expect:0.0, Method:Compositional matrix adjust., Identities:573/793(72%), Positives:664/793(83%), Gaps:0/793(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL+CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLKSEKLSCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 596 AVEPYHGKVVVPEGHAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 K ++ SE D EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 KTVKPSEHDGEYLYDIDRKQCVKKELVTGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVKR++G+D+ ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKRIKGLDVNARTVDSVLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G K+PV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKYPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 T+V+HKSISRRCTK+VT++VSTLFYDKRMRT NP KI IDTT +TKP++DD+ILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPKETKIEIDTTGSTKPKQDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +E+MTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE RI Sbjct 896 GWVKQLQIDYKGNEVMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDRI 955 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTA YPG F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGNFTATIEEWQAEHDAIMRHILERPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 AL PVL TA I +T QW T+ F+ DKA S E+ LN LC RFFG+D+DSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDMTTEQWNTVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR+ D+ T T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 P+NRRLPH+LV+ H ++S +SKL G+TVLV+G +SVPGK V+ L P+ T++ Sbjct 1136 PVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKTVDWLSDRPEATFR 1195 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 A LDLGIP + KYDIIF+NVRTPYK+HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1196 ARLDLGIPGDVPKYDIIFINVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYG ADRA+E+II A+AR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1256 GYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLFVFIGYDRKARTHNPYKLSSTL 1315 Query 781 NNIYQGSTQYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus] Sequence ID: Q8V294.3 Length: 2497 Range 1: 536 to 1328 Score:1214 bits(3141), Expect:0.0, Method:Compositional matrix adjust., Identities:573/793(72%), Positives:662/793(83%), Gaps:0/793(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYAGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +V++ SE + EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 T+V+HKSISRRCTK+VT++VSTLFYDKRMRT NP KI IDTT +TKP++DD+ILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKPKKDDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRKGVYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKGVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 AL PVL TA I LT QW T+ FK+DKA S E+ LN LC RFFG+D+DSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPL 1075 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR D+ T T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 P+NRRLPH+LV H ++S +SKL G+TVLV+G +S+ GK V+ L P T++ Sbjct 1136 PVNRRLPHALVTQHADYPPSDFSAFVSKLKGRTVLVVGEKMSISGKTVDWLSETPDSTFR 1195 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 A LDLGIPS + KYDI+FVNVRT Y++HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1196 ARLDLGIPSELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 781 NNIYQGSTQYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSRLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Venezuelan equine encephalitis virus (strain Mena II)] Sequence ID: Q9WJC7.3 Length: 2499 Range 1: 536 to 1328 Score:1204 bits(3114), Expect:0.0, Method:Compositional matrix adjust., Identities:567/793(72%), Positives:661/793(83%), Gaps:0/793(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 GSVETPR IKVT+Y GE+ IGSYAVLSPQAVL SEKL CIHPLAEQV+V+TH GR GRY Sbjct 536 GSVETPRGLIKVTSYGGEDKIGSYAVLSPQAVLRSEKLTCIHPLAEQVIVITHSGRKGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VEPYHG+VVVP G AIP+ DFQALSESATIVYNEREFVNRYLHHIA +GGA+NTDEEYY Sbjct 596 AVEPYHGKVVVPEGQAIPVQDFQALSESATIVYNEREFVNRYLHHIATHGGALNTDEEYY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +V++ SE + EY++DID ++CVKK + L GELVDPPFHEFAYESL+TRPAAP++VP Sbjct 656 RVVKPSEHEGEYLYDIDKKQCVKKELVSGLGLTGELVDPPFHEFAYESLRTRPAAPYQVP 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 TIGVYGVPGSGKSGIIKSAVTK+DLVVSAKKENC EII+DVK+M+G+D+ ARTVDSVLLN Sbjct 716 TIGVYGVPGSGKSGIIKSAVTKKDLVVSAKKENCAEIIRDVKKMKGLDVNARTVDSVLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 G KHPV+TLYIDEAFACHAGTL ALIAI++PKK VLCGDPKQCGFFNMMCLKVHFNHEIC Sbjct 776 GCKHPVETLYIDEAFACHAGTLRALIAIIRPKKAVLCGDPKQCGFFNMMCLKVHFNHEIC 835 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 T+V+HKSISRRCTK+VT++VSTLFYDKRMRT NP KI IDTT +TK +++D+ILTCFR Sbjct 836 TQVFHKSISRRCTKSVTSVVSTLFYDKRMRTTNPRDSKIEIDTTGSTKSKKEDLILTCFR 895 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVKQLQIDYK +EIMTAAASQGLTRK VYAVRYKVNENPLYA TSEHVNVLLTRTE +I Sbjct 896 GWVKQLQIDYKGNEIMTAAASQGLTRKSVYAVRYKVNENPLYAPTSEHVNVLLTRTEDKI 955 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWAK 480 VWKTLAGDPWIKTLTA YPG+F+AT+EEWQAEHDAIM ILE P +DV+QNK +VCWAK Sbjct 956 VWKTLAGDPWIKTLTAKYPGDFTATMEEWQAEHDAIMRHILEKPDPTDVFQNKANVCWAK 1015 Query 481 ALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVPL 540 AL PVL TA I LT QW T+ FK+DKA S E+ LN LC R+FG+D+DSGLFSAPTVPL Sbjct 1016 ALVPVLKTAGIDLTTEQWNTVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPL 1075 Query 541 TYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINVV 600 + N HWDNSP PN YGL ++L+RRYP + +AV TGR+ D+ T T+++Y P IN+V Sbjct 1076 SIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLV 1135 Query 601 PLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPISVPGKRVETLGPGPQCTYK 660 P+NRRLPH+LV H ++S +SKL G+TVLV+G +++ GK V+ L P T++ Sbjct 1136 PVNRRLPHALVTQHADHPPSDFSAFVSKLKGRTVLVVGEKMNISGKAVDWLSETPDATFR 1195 Query 661 ADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVAL 720 A LDLGIP+ + KYDI+FVNVRT Y++HHYQQCEDHAI SMLT+KA HLN GGTCV++ Sbjct 1196 ARLDLGIPTELPKYDIVFVNVRTQYRYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI 1255 Query 721 GYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQLSIVL 780 GYG ADRA+E+II AVAR F+FSRVC+PK + E TEV FVF G D + +LS L Sbjct 1256 GYGYADRASESIIGAVARQFKFSRVCKPKVSKEETEVLFVFIGFDRKTRTHNPYKLSSTL 1315 Query 781 NNIYQGSTQYEAG 793 NIY GS +EAG Sbjct 1316 TNIYTGSGLHEAG 1328 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Semliki Forest virus] Sequence ID: P08411.2 Length: 2432 Range 1: 538 to 1335 Score:954 bits(2466), Expect:0.0, Method:Compositional matrix adjust., Identities:468/801(58%), Positives:588/801(73%), Gaps:11/801(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR +KVT P + +G+Y VLSPQ VL S KLA +HPLAEQV ++TH GRAGRY Sbjct 538 GVVETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGRY 597 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 +V+ Y GRV++P G+AIP+P+FQALSESAT+VYNEREFVNR L+HIA++G ++NTDEE Y Sbjct 598 QVDGYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENY 657 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 + +R+ D+EYVFD+D + CVK+ +A + LVGEL +PPFHEFAYE LK RP+AP+K Sbjct 658 EKVRAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTT 717 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 +GV+GVPGSGKS IIKS VTK DLV S KKENC EI+ DVK+ RG+DI A+TVDS+LLN Sbjct 718 VVGVFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGLDIQAKTVDSILLN 777 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G + VD LY+DEAFACH+GTLLALIA+VKP+ KVVLCGDPKQCGFFNMM LKV+FNH I Sbjct 778 GCRRAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNI 837 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CTEV HKSISRRCT+ VTAIVSTL Y +MRT NPC+ IIIDTT TKP+ DI+LTCF Sbjct 838 CTEVCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCF 897 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQ+DY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA SEHVNVLLTRTE R Sbjct 898 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDR 957 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASS-DVYQNKVHVCW 478 +VWKTLAGDPWIK L+ G F+ATLEEWQ EHD IM +++E PA+ D +QNK +VCW Sbjct 958 LVWKTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIM-KVIEGPAAPVDAFQNKANVCW 1016 Query 479 AKALEPVLATANITLTRSQWET-IPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPT 537 AK+L PVL TA I LT +W T I AFK+D+A+SP +ALN +CT+++GVD+DSGLFSAP Sbjct 1017 AKSLVPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPK 1076 Query 538 VPLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLI 597 V L Y N HWDN PG YG TA L R+ + TG+ A + I+ S L Sbjct 1077 VSLYYENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLD 1136 Query 598 NVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP--- 653 NV+P+NRRLPH+LV ++ L++K+ G VL++ +++P +RV L P Sbjct 1137 NVIPINRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPLNV 1196 Query 654 -GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLN 712 G Y DL LG+P+ G++D++FVN+ T ++ HHYQQC DHA+ ML A+ L Sbjct 1197 TGADRCY--DLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLK 1254 Query 713 KGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRD 772 GG+ + YG AD+ +E ++S+++R F +RV +P C NTEV +F DNG Sbjct 1255 PGGSLLMRAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPST 1314 Query 773 QDQLSIVLNNIYQGSTQYEAG 793 Q++ L+ +Y G + AG Sbjct 1315 LHQMNTKLSAVYAGEAMHTAG 1335 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sagiyama virus] Sequence ID: Q9JGL0.3 Length: 2467 Range 1: 535 to 1331 Score:951 bits(2458), Expect:0.0, Method:Compositional matrix adjust., Identities:464/799(58%), Positives:578/799(72%), Gaps:8/799(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR +KVT + IGSY +LSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 V+ Y GRV++P+G AIP+ +FQALSESAT+VYNEREF+NR LHHIA+ G A+NTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 + +R+ A++EYVFD+D + C+KK +A + L G+L++PPFHEFAYE LK RPAAP+ Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT RDLV S KKENC EI+ DVKR RG+D+ ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G K V+ LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH I Sbjct 775 GCKRGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT V HKSISRRCT VTAIVSTL Y +MRT N C+ I IDTT ++KP DI+LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+GDPWIK LT G+FSATLEEWQ EHD IM + E PA D +QNK VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWQEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 480 KALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVP 539 K L VL TA I +T +W TI AF++D+A+SPE+ALN +CTR++GVD+DSGLFSA +V Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 540 LTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINV 599 L Y N HWDN PG YG A++ A R+P + +++G +V ++ +S N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 600 VPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP----G 654 VP NRRLPH+LV S++ LL K+ G +L++ +++P KRV + P G Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLAIPHKRVFWIAPPRVSG 1194 Query 655 PQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKG 714 TY DLDLG+P G+YD++FVN+ T Y+ HHYQQC DH++ ML ++ L G Sbjct 1195 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 1252 Query 715 GTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQD 774 G+ + YG ADR +E +++A+AR F RV +P C NTEV +F DNG Sbjct 1253 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 1312 Query 775 QLSIVLNNIYQGSTQYEAG 793 Q + L+++Y + + AG Sbjct 1313 QANQKLSSMYACNGLHTAG 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Getah virus] Sequence ID: Q5Y389.3 Length: 2467 Range 1: 535 to 1331 Score:948 bits(2451), Expect:0.0, Method:Compositional matrix adjust., Identities:463/799(58%), Positives:576/799(72%), Gaps:8/799(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR +KVT + IGSY +LSPQ VL SEKLA IHPLAEQV VMTH GR+GRY Sbjct 535 GVVETPRNALKVTPQAHDHLIGSYLILSPQTVLKSEKLAPIHPLAEQVTVMTHSGRSGRY 594 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 V+ Y GRV++P+G AIP+ +FQALSESAT+VYNEREF+NR LHHIA+ G A+NTDEE Y Sbjct 595 PVDKYDGRVLIPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEESY 654 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 + +R+ A++EYVFD+D + C+KK +A + L G+L++PPFHEFAYE LK RPAAP+ Sbjct 655 EKVRAERAETEYVFDVDKKACIKKEEASGLVLTGDLINPPFHEFAYEGLKIRPAAPYHTT 714 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT RDLV S KKENC EI+ DVKR RG+D+ ARTVDS+LLN Sbjct 715 IIGVFGVPGSGKSAIIKNMVTTRDLVASGKKENCQEIMNDVKRQRGLDVTARTVDSILLN 774 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G K V+ LY+DEAFACH+GTLLALIA+V+P KVVLCGDPKQCGFFN+M LKVH+NH I Sbjct 775 GCKKGVENLYVDEAFACHSGTLLALIALVRPSGKVVLCGDPKQCGFFNLMQLKVHYNHNI 834 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT V HKSISRRCT VTAIVSTL Y +MRT N C+ I IDTT ++KP DI+LTCF Sbjct 835 CTRVLHKSISRRCTLPVTAIVSTLHYQGKMRTTNRCNTPIQIDTTGSSKPASGDIVLTCF 894 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLY+ SEHVNVLLTRTE R Sbjct 895 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYSPLSEHVNVLLTRTENR 954 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+GDPWIK LT G+FSATLEEW EHD IM + E PA D +QNK VCWA Sbjct 955 LVWKTLSGDPWIKVLTNVPRGDFSATLEEWHEEHDGIMRVLNERPAEVDPFQNKAKVCWA 1014 Query 480 KALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVP 539 K L VL TA I +T +W TI AF++D+A+SPE+ALN +CTR++GVD+DSGLFSA +V Sbjct 1015 KCLVQVLETAGIRMTADEWNTILAFREDRAYSPEVALNEICTRYYGVDLDSGLFSAQSVS 1074 Query 540 LTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINV 599 L Y N HWDN PG YG A++ A R+P + +++G +V ++ +S N+ Sbjct 1075 LFYENNHWDNRPGGRMYGFNHEVARKYAARFPFLRGNMNSGLQLNVPERKLQPFSAECNI 1134 Query 600 VPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP----G 654 VP NRRLPH+LV S++ LL K+ G +L++ + +P KRV + P G Sbjct 1135 VPSNRRLPHALVTSYQQCRGERVEWLLKKIPGHQMLLVSEYNLVIPHKRVFWIAPPRVSG 1194 Query 655 PQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKG 714 TY DLDLG+P G+YD++FVN+ T Y+ HHYQQC DH++ ML ++ L G Sbjct 1195 ADRTY--DLDLGLPMDAGRYDLVFVNIHTEYRQHHYQQCVDHSMRLQMLGGDSLHLLRPG 1252 Query 715 GTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQD 774 G+ + YG ADR +E +++A+AR F RV +P C NTEV +F DNG Sbjct 1253 GSLLMRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFSNFDNGRRAVTLH 1312 Query 775 QLSIVLNNIYQGSTQYEAG 793 Q + L+++Y + + AG Sbjct 1313 QANQKLSSMYACNGLHTAG 1331 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ross river virus (STRAIN NB5092)] Sequence ID: P13887.2 Length: 2480 Range 1: 534 to 1330 Score:944 bits(2441), Expect:0.0, Method:Compositional matrix adjust., Identities:459/799(57%), Positives:580/799(72%), Gaps:8/799(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR +KVT ++ IG+Y +LSPQ VL SEKL IHPLAEQV +MTH GR+GRY Sbjct 534 GVVETPRNALKVTPQERDQLIGAYLILSPQTVLKSEKLTPIHPLAEQVTIMTHSGRSGRY 593 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 V+ Y GRV+VP+G AIP+ +FQALSESAT+VYNEREF+NR LHHIA+ G A+NTDEE Y Sbjct 594 PVDRYDGRVLVPTGAAIPVSEFQALSESATMVYNEREFINRKLHHIALYGPALNTDEENY 653 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 + +R+ A++EYVFD+D R CVK+ DA + LVG+L++PPFHEFAYE LK RPA P + Sbjct 654 EKVRAERAEAEYVFDVDKRTCVKREDASGLVLVGDLINPPFHEFAYEGLKIRPATPFQTT 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIKS VT RDLV S KKENC EI+ DVK+ RG+D+ ARTVDS+LLN Sbjct 714 VIGVFGVPGSGKSAIIKSVVTTRDLVASGKKENCQEIVNDVKKQRGLDVTARTVDSILLN 773 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G + V+ LY+DEAFACH+GTLLALIA+VKP KV+LCGDPKQCGFFN+M LKV+FNH+I Sbjct 774 GCRRGVENLYVDEAFACHSGTLLALIAMVKPTGKVILCGDPKQCGFFNLMQLKVNFNHDI 833 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT+V HKSISRRCT +TAIVSTL Y +MRT N CS I IDTT TTKP + DI+LTCF Sbjct 834 CTQVLHKSISRRCTLPITAIVSTLHYQGKMRTTNLCSAPIQIDTTGTTKPAKGDIVLTCF 893 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 R WVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA +SEHVNVLLTRTE R Sbjct 894 RXWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPSSEHVNVLLTRTENR 953 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+GDPWIK LT G+FSATLEEWQ EHD IM + E + D +QNK VCWA Sbjct 954 LVWKTLSGDPWIKVLTNIPKGDFSATLEEWQEEHDNIMNALRERSTAVDPFQNKAKVCWA 1013 Query 480 KALEPVLATANITLTRSQWETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTVP 539 K L VL TA I +T +W+T+ AF++D+A+SPE+ALN +CT+++GVD+DSGLFSA +V Sbjct 1014 KCLVQVLETAGIRMTAEEWDTVLAFREDRAYSPEVALNEICTKYYGVDLDSGLFSAQSVS 1073 Query 540 LTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLINV 599 L Y N HWDN PG YG A++ +RYP + +D+G +V ++ ++ N+ Sbjct 1074 LYYENNHWDNRPGGRMYGFNREVARKFEQRYPFLRGKMDSGLQVNVPERKVQPFNAECNI 1133 Query 600 VPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP----G 654 + LNRRLPH+LV S++ LL KL G +L++ +++P KRV + P G Sbjct 1134 LLLNRRLPHALVTSYQQCRGERVEWLLKKLPGYHLLLVSEYNLALPHKRVFWIAPPHVSG 1193 Query 655 PQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKG 714 Y DLDLG+P G+YD++FVN+ T Y+ HHYQQC DH++ ML ++ L G Sbjct 1194 ADRIY--DLDLGLPLNAGRYDLVFVNIHTEYRTHHYQQCVDHSMKLQMLGGDSLHLLXPG 1251 Query 715 GTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQD 774 G+ + YG ADR +E +++A+AR F RV +P C NTEV +F DNG Sbjct 1252 GSLLIRAYGYADRVSEMVVTALARKFSAFRVLRPACVTSNTEVFLLFTNFDNGRRAVTLH 1311 Query 775 QLSIVLNNIYQGSTQYEAG 793 Q + L++++ + + AG Sbjct 1312 QANQRLSSMFACNGLHTAG 1330 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Mayaro virus (strain Brazil)] Sequence ID: Q8QZ73.3 Length: 2437 Range 1: 537 to 1333 Score:939 bits(2427), Expect:0.0, Method:Compositional matrix adjust., Identities:464/802(58%), Positives:582/802(72%), Gaps:14/802(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR +KVT + +GSY VLSPQ VL S KL +HPLAE V ++THKGRAGRY Sbjct 537 GVVETPRNALKVTPQDRDTMVGSYLVLSPQTVLKSVKLQALHPLAESVKIITHKGRAGRY 596 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 +V+ Y GRV++P+G AIP+PDFQALSESAT+VYNEREF+NR L+HIA++G A+NTDEE Y Sbjct 597 QVDAYDGRVLLPTGAAIPVPDFQALSESATMVYNEREFINRKLYHIAVHGAALNTDEEGY 656 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 + +R+ D+EYV+D+D ++CVK+ +A + ++G+L++PPFHEFAYE LK RPAAP+K Sbjct 657 EKVRAESTDAEYVYDVDRKQCVKREEAEGLVMIGDLINPPFHEFAYEGLKRRPAAPYKTT 716 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 +GV+GVPGSGKSGIIKS VT+ DLV S KKENC EI+ DVKR R +D+ A+TVDSVLLN Sbjct 717 VVGVFGVPGSGKSGIIKSLVTRGDLVASGKKENCQEIMLDVKRYRDLDMTAKTVDSVLLN 776 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNHEI 299 GVK VD LY+DEAFACHAGTLLALIA V+P KKVVLCGDPKQCGFFN+M L+V+FNH I Sbjct 777 GVKQTVDVLYVDEAFACHAGTLLALIATVRPRKKVVLCGDPKQCGFFNLMQLQVNFNHNI 836 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CTEV HKSISRRCT +TAIVSTL Y+ RMRT NP + +IIDTT TKP R+DI+LTCF Sbjct 837 CTEVDHKSISRRCTLPITAIVSTLHYEGRMRTTNPYNKPVIIDTTGQTKPNREDIVLTCF 896 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQ+DY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYAQ+SEHVNVLLTRTE R Sbjct 897 RGWVKQLQLDYRGHEVMTAAASQGLTRKGVYAVRMKVNENPLYAQSSEHVNVLLTRTEGR 956 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+GDPWIKTL+ G F+ATLE+WQ EHD IM I + A DV+QNK VCWA Sbjct 957 LVWKTLSGDPWIKTLSNIPKGNFTATLEDWQREHDTIMRAITQEAAPLDVFQNKAKVCWA 1016 Query 480 KALEPVLATANITLTRSQWET-IPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K L PVL TA I L+ + W I AFK+D+A+SPE+ALN +CT+ +GVD+DSGLFSAP V Sbjct 1017 KCLVPVLETAGIKLSATDWSAIILAFKEDRAYSPEVALNEICTKIYGVDLDSGLFSAPRV 1076 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGR--LADVRTNTIKDYSPL 596 L YT HWDNSPG YG + A L +++P +G+ +A+ +T I Sbjct 1077 SLHYTTNHWDNSPGGRMYGFSVEAANRLEQQHPFYRGRWASGQVLVAERKTQPI---DVT 1133 Query 597 INVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP-- 653 N++P NRRLPH+LV + L++K+ G VL++ + +P ++V + P Sbjct 1134 CNLIPFNRRLPHTLVTEYHPIKGERVEWLVNKIPGYHVLLVSEYNLILPRRKVTWIAPPT 1193 Query 654 --GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHL 711 G TY DLDLG+P G+YD++FVN+ TPY+ HHYQQC DHA+ ML A+ L Sbjct 1194 VTGADLTY--DLDLGLPPNAGRYDLVFVNMHTPYRLHHYQQCVDHAMKLQMLGGDALYLL 1251 Query 712 NKGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLR 771 GG+ + Y ADR +E +++A+AR F R +C NTEV +F DNG Sbjct 1252 KPGGSLLLSTYAYADRTSEAVVTALARRFSSFRAVTVRCVTSNTEVFLLFTNFDNGRRTV 1311 Query 772 DQDQLSIVLNNIYQGSTQYEAG 793 Q + L++IY G+ AG Sbjct 1312 TLHQTNGKLSSIYAGTVLQAAG 1333 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain S27-African prototype] Sequence ID: Q8JUX6.1 Length: 2474 Range 1: 536 to 1307 Score:932 bits(2408), Expect:0.0, Method:Compositional matrix adjust., Identities:449/774(58%), Positives:565/774(72%), Gaps:9/774(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G +ETPR IKVT P + +G Y VLSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VE Y GRV+VPSG AI DFQ+LSESAT+VYNEREFVNR LHHIA++G A+NTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +++R+ + EYV+D+D R+C KK +A + LVG+L +PP+HEFAYE LK RPA P+K+ Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R RG++I+ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G PVD LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT +TKP D++LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+GDPWIKTL G F AT++EW+ EH +IM I + D +QNK +VCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWA 1015 Query 480 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K+L P+L TA I L QW + I AFK+DKA+SPE+ALN +CTR +GVD+DSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 598 + Y + HWDN PG +G A L R+YP + + V T I+D++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTN 1135 Query 599 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVI-GTPISVPGKRVETLGP---- 653 ++P NRRLPHSLV HR L++K+ G VL++ G +++P KRV + P Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVR 1195 Query 654 GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 713 G TY +L+LG+P+T+G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1196 GADYTY--NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 1253 Query 714 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNG 767 GG+ + YG ADR +E +I + R FR SR +P C NTE+ F+F DNG Sbjct 1254 GGSLLIRAYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNG 1307 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Chikungunya virus strain Senegal 37997] Sequence ID: Q5XXP4.1 Length: 2474 Range 1: 536 to 1307 Score:924 bits(2387), Expect:0.0, Method:Compositional matrix adjust., Identities:445/774(57%), Positives:563/774(72%), Gaps:9/774(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G +ETPR IKVT P + +G Y VLSPQ VL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIIETPRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VE Y GR++VPSG AI DFQ+LSESAT+VYNEREFVNR LHHIA++G A+NTDEE Y Sbjct 596 AVEAYDGRILVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIALHGPALNTDEESY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +++R+ + EYV+D+D R+C KK +A + LVG+L +PP+HEFAYE L+ RPA P+K Sbjct 656 ELVRAERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLRIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++I+ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISTDVMRQRNLEISARTVDSLLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G PVD LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNRPVDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT +TKP D++LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+GDPWIKTL G F AT++EW+ EH +IM I + D +QNK +VCWA Sbjct 956 LVWKTLSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICNHQVTFDTFQNKANVCWA 1015 Query 480 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K+L P+L TA I L QW + I AFK+D+A+SPE+ALN +CTR +GVD+DSGLFS P V Sbjct 1016 KSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLV 1075 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 598 + Y + HWDN PG +G A L R+YP +T + V T I+D++P N Sbjct 1076 SVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTN 1135 Query 599 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVI-GTPISVPGKRVETLGP---- 653 ++P NRRLPHSLV HR L++K+ G VL++ G + +P KRV + P Sbjct 1136 IIPANRRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGYNLVLPTKRVTWVAPLGIR 1195 Query 654 GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 713 G TY +L+LG+P+T+G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1196 GADYTY--NLELGLPATLGRYDLVIINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 1253 Query 714 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNG 767 GG+ + YG ADR +E ++ + R FR SR +P C NTE+ F+F DNG Sbjct 1254 GGSLLIRAYGYADRTSERVVCVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNG 1307 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Barmah Forest virus] Sequence ID: P87515.3 Length: 2411 Range 1: 534 to 1325 Score:918 bits(2373), Expect:0.0, Method:Compositional matrix adjust., Identities:455/792(57%), Positives:568/792(71%), Gaps:5/792(0%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR IKV+T G+ IGSY +LSPQAVL SEKLACIH LAEQV ++TH GR+GRY Sbjct 534 GVVETPRNSIKVSTQIGDALIGSYLILSPQAVLRSEKLACIHDLAEQVKLVTHSGRSGRY 593 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 V+ Y GRV+VP+G AI I FQALSESAT+VYNEREFVNR L HIA+ G A+NTDEE Y Sbjct 594 AVDKYXGRVLVPTGVAIDIQSFQALSESATLVYNEREFVNRKLWHIAVYGAALNTDEEGY 653 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 + + A+S+YVFD+D + C+KK A L GELV+PPFHEFAYE L+TRP+AP+KV Sbjct 654 EKVPVERAESDYVFDVDQKMCLKKEQASGWVLCGELVNPPFHEFAYEGLRTRPSAPYKVH 713 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 T+GVYGVPGSGKS IIK+ VT DLV+S KKENC EI+ DV + R + I A+TVDSVLLN Sbjct 714 TVGVYGVPGSGKSAIIKNTVTMSDLVLSGKKENCLEIMNDVLKHRALRITAKTVDSVLLN 773 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 GVKH + LYIDEAF+CHAGTLLA IAIV+PK KVVLCGDPKQCGFFNMM LKV++NH+I Sbjct 774 GVKHTPNILYIDEAFSCHAGTLLATIAIVRPKQKVVLCGDPKQCGFFNMMQLKVNYNHDI 833 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 C+EV+HKSISRRCT+ +TAIVS L Y RMRT NP IIIDTT TTKP + D+ILTCF Sbjct 834 CSEVFHKSISRRCTQDITAIVSKLHYQDRMRTTNPRKGDIIIDTTGTTKPAKTDLILTCF 893 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQ DY+ +E+MTAAASQGLTR VYAVR KVNENPLYAQTSEHVNVLLTRTE + Sbjct 894 RGWVKQLQQDYRGNEVMTAAASQGLTRASVYAVRTKVNENPLYAQTSEHVNVLLTRTENK 953 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 +VWKTL+ DPWIKTLT G ++AT+ EW+AEH IM+ I + + NKV+VCWA Sbjct 954 LVWKTLSTDPWIKTLTNPPRGHYTATIAEWEAEHQGIMKAIQGYAPPVNTFMNKVNVCWA 1013 Query 480 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K L PVL TA I+L+ W E +P F D A+SPE+ALN +CT+ +G D+D+GLFS P+V Sbjct 1014 KTLTPVLETAGISLSAEDWSELLPPFAQDVAYSPEVALNIICTKMYGFDLDTGLFSRPSV 1073 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 598 P+TYT +HWDN G YG + +LARR+P + +G V I+ N Sbjct 1074 PMTYTKDHWDNRVGGKMYGFSQQAYDQLARRHPYLRGREKSGMQIVVTEMRIQRPRSDAN 1133 Query 599 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGT-PISVPGKRVETLGP-GPQ 656 ++P+NRRLPHSLV +H Y + + G T+L++ +++P K++ L P G Q Sbjct 1134 IIPINRRLPHSLVATHEYRRAARAEEFFTTTRGYTMLLVSEYNMNLPNKKITWLAPIGTQ 1193 Query 657 CT-YKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGG 715 + A+L+LGIP +G +D + VN+ TP+++HHYQQCEDHA+ ML A+ H+ GG Sbjct 1194 GAHHTANLNLGIPPLLGSFDAVVVNMPTPFRNHHYQQCEDHAMKLQMLAGDALRHIKPGG 1253 Query 716 TCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQDQ 775 + YG ADR +E+++ A+AR F+ RV QP C NTEV F DNG Sbjct 1254 SLWVKAYGYADRHSEHVVLALARKFKSFRVTQPSCVTSNTEVFLHFSIFDNGKRAIALHS 1313 Query 776 LSIVLNNIYQGS 787 + N+I+Q + Sbjct 1314 ANRKANSIFQNT 1325 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Igbo Ora virus] Sequence ID: O90370.1 Length: 2513 Range 1: 536 to 1326 Score:916 bits(2367), Expect:0.0, Method:Compositional matrix adjust., Identities:442/793(56%), Positives:570/793(71%), Gaps:9/793(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR IKVT P + +G Y VL+PQAVL S+KL IH LAEQV TH GRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLGLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VE Y GRV+VPSG AIP DFQ+LSESAT+V+NEREFVNR LHHIA++G A+NTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +++R + + EYV+D+D +KC K+ +A + LVG+L PP+HEFAYE LK RPA P+K Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++I+ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G PV+ LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT TTKP+ D++LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGTTKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ +E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 ++WKTL+GDPWIK L G F AT++EW+AEH +IM I + D +QNK +VCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNYQMAFDTFQNKANVCWA 1015 Query 480 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K L P+L TA I L+ QW + + AFK+D+A+SPE+ALN +CTR +GVD+DSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 598 + Y + HWDN PG +G A L ++YP + + + T + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVI-GTPISVPGKRVETLGP---- 653 ++P NRRLPHSLV H L++K+ G +L++ G + +P KRV + P Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 654 GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 713 G TY +L+LG+P+T+G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1196 GADYTY--NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 1253 Query 714 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQ 773 GG+ + YG ADR +E +IS + R FR SR +P+C NTE+ F+F DNG Sbjct 1254 GGSLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTT 1313 Query 774 DQLSIVLNNIYQG 786 ++ LN +Y G Sbjct 1314 HVMNNQLNAVYAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain SG650] Sequence ID: O90368.1 Length: 2513 Range 1: 536 to 1326 Score:915 bits(2366), Expect:0.0, Method:Compositional matrix adjust., Identities:441/793(56%), Positives:570/793(71%), Gaps:9/793(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR IKVT P + +G Y VL+PQAVL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDRVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VE Y GRV+VPSG AIP DFQ+LSESAT+V+NEREFVNR LHHIA++G A+NTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +++R + + EYV+D+D +KC K+ +A + LVG+L PP+HEFAYE LK RPA P+K Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++I+ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G PV+ LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT TKP+ D++LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ +E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 ++WKTL+GDPWIK L G F AT++EW+AEH +IM I + D +QNK +VCWA Sbjct 956 LIWKTLSGDPWIKILQNPPKGNFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 480 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K L P+L TA I L+ QW + + AFK+D+A+SPE+ALN +CTR +GVD+DSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 598 + Y + HWDN PG +G A L ++YP + + + T + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVI-GTPISVPGKRVETLGP---- 653 ++P NRRLPHSLV H L++K+ G +L++ G + +P KRV + P Sbjct 1136 IIPANRRLPHSLVAEHHTVRGERMEWLVNKINGHHMLLVSGYNLILPTKRVTWVAPLGTR 1195 Query 654 GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 713 G TY +L+LG+P+T+G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1196 GADYTY--NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 1253 Query 714 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQ 773 GG+ + YG ADR +E +IS + R FR SR +P+C NTE+ F+F DNG Sbjct 1254 GGSLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTT 1313 Query 774 DQLSIVLNNIYQG 786 ++ LN +Y G Sbjct 1314 HVMNNQLNAVYAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [O'nyong-nyong virus strain Gulu] Sequence ID: P13886.2 Length: 2514 Range 1: 536 to 1326 Score:914 bits(2361), Expect:0.0, Method:Compositional matrix adjust., Identities:441/793(56%), Positives:570/793(71%), Gaps:9/793(1%) Query 1 GSVETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRY 60 G VETPR IKVT P + +G Y VL+PQAVL S+KL+ IH LAEQV TH GRAGRY Sbjct 536 GIVETPRGAIKVTAQPSDLVVGEYLVLTPQAVLRSQKLSLIHALAEQVKTCTHSGRAGRY 595 Query 61 KVEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYY 120 VE Y GRV+VPSG AIP DFQ+LSESAT+V+NEREFVNR LHHIA++G A+NTDEE Y Sbjct 596 AVEAYDGRVLVPSGYAIPQEDFQSLSESATMVFNEREFVNRKLHHIAMHGPALNTDEESY 655 Query 121 KVLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVP 180 +++R + + EYV+D+D +KC K+ +A + LVG+L PP+HEFAYE LK RPA P+K Sbjct 656 ELVRVEKTEHEYVYDVDQKKCCKREEATGLVLVGDLTSPPYHEFAYEGLKIRPACPYKTA 715 Query 181 TIGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLN 240 IGV+GVPGSGKS IIK+ VT++DLV S KKENC EI DV R R ++I+ARTVDS+LLN Sbjct 716 VIGVFGVPGSGKSAIIKNLVTRQDLVTSGKKENCQEISNDVMRQRKLEISARTVDSLLLN 775 Query 241 GVKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEI 299 G PV+ LY+DEAFACH+GTLLALIA+V+P+ KVVLCGDPKQCGFFNMM +KV++NH I Sbjct 776 GCNKPVEVLYVDEAFACHSGTLLALIAMVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNI 835 Query 300 CTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCF 359 CT+VYHKSISRRCT VTAIVS+L Y+ +MRT N + I++DTT TKP+ D++LTCF Sbjct 836 CTQVYHKSISRRCTLPVTAIVSSLHYESKMRTTNEYNQPIVVDTTGITKPEPGDLVLTCF 895 Query 360 RGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKR 419 RGWVKQLQIDY+ +E+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE + Sbjct 896 RGWVKQLQIDYRGNEVMTAAASQGLTRKGVYAVRQKVNENPLYAPTSEHVNVLLTRTEGK 955 Query 420 IVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCWA 479 + WKTL+GDPWIK L G+F AT++EW+AEH +IM I + D +QNK +VCWA Sbjct 956 LTWKTLSGDPWIKILQNPPKGDFKATIKEWEAEHASIMAGICNHQMAFDTFQNKANVCWA 1015 Query 480 KALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 K L P+L TA I L+ QW + + AFK+D+A+SPE+ALN +CTR +GVD+DSGLFS P + Sbjct 1016 KCLVPILDTAGIKLSDRQWSQIVQAFKEDRAYSPEVALNEICTRIYGVDLDSGLFSKPLI 1075 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTIKDYSPLIN 598 + Y + HWDN PG +G A L ++YP + + + T + +++P N Sbjct 1076 SVYYADNHWDNRPGGKMFGFNPEVALMLEKKYPFTKGKWNINKQICITTRKVDEFNPETN 1135 Query 599 VVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVI-GTPISVPGKRVETLGP---- 653 ++P NRRLPHSLV H L++K+ G +L++ G + +P KRV + P Sbjct 1136 IIPANRRLPHSLVAEHHSVRGERMEWLVNKISGHHMLLVSGHNLILPTKRVTWVAPLGTR 1195 Query 654 GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNK 713 G TY +L+LG+P+T+G+YD++ +N+ TP++ HHYQQC DHA+ ML ++ L Sbjct 1196 GADYTY--NLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKP 1253 Query 714 GGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNGNHLRDQ 773 GG+ + YG ADR +E +IS + R FR SR +P+C NTE+ F+F DNG Sbjct 1254 GGSLLIRAYGYADRTSERVISVLGRKFRSSRALKPQCITSNTEMFFLFSRFDNGRRNFTT 1313 Query 774 DQLSIVLNNIYQG 786 ++ LN +Y G Sbjct 1314 HVMNNQLNAVYAG 1326 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Ockelbo virus] Sequence ID: P27283.2 Length: 2515 Range 1: 543 to 1341 Score:879 bits(2271), Expect:0.0, Method:Compositional matrix adjust., Identities:443/803(55%), Positives:559/803(69%), Gaps:22/803(2%) Query 3 VETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 62 VETPR H+++ + IG Y V+SP +VL + KLA HPLA+QV ++TH GRAGRY V Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPTSVLKNAKLAPAHPLADQVKIITHSGRAGRYAV 602 Query 63 EPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYYKV 122 EPY +V++P+G+A+P P+F ALSESAT+VYNEREFVNR L+HIA++G A NT+EE YKV Sbjct 603 EPYDAKVLMPAGSAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 123 LRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPTI 182 ++ A++EYVFD+D ++CVKK +A + L GEL +PP+HE A E LKTRPA P+KV TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 183 GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLNGV 242 GV G PGSGKS IIKS VT RDLV S KKENC EI DV R+RGM I ++TVDSV+LNG Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 243 KHPVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---E 298 V+ LY+DEAFACHAG LLALIAIV+P KKVVLCGDPKQCGFFNMM LKVHFNH + Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPKQCGFFNMMQLKVHFNHPERD 842 Query 299 ICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTC 358 ICT+ ++K ISRRCT+ VTAIVSTL YD +M+T NPC I ID T TKP+ DIILTC Sbjct 843 ICTKTFYKFISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 359 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEK 418 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNEN LYA TSEHVNVLLTRTE Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENALYAITSEHVNVLLTRTED 962 Query 419 RIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCW 478 R+VWKTL GDPWIK LT G F AT+E+W+AEH I+ I ++ + K +VCW Sbjct 963 RLVWKTLQGDPWIKQLTNVPKGNFQATIEDWEAEHKGIIAAINSPAPRTNPFSCKTNVCW 1022 Query 479 AKALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPT 537 AKALEP+LATA I LT QW E P F DDK S AL+ +C +FFG+D+ SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 538 VPLTY-------TNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTI 590 +PLTY HWDNSPG +YG A EL+RR+P + + G D++T Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAVAAELSRRFP-VFQLAGKGTQLDLQTGRT 1141 Query 591 KDYSPLINVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTP-ISVPGKRVE 649 + S N+VP+NR LPH+LV H+ G + L++ +VLV+ I P KR+E Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEHKEKQPGPVEKFLNQFKHHSVLVVSEEKIEAPHKRIE 1201 Query 650 TLGP----GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTR 705 + P G Y +L G P +YD++F+N+ T Y++HH+QQCEDHA L+R Sbjct 1202 WIAPIGIAGADKNY--NLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 1258 Query 706 KAVDHLNKGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKD 765 A++ LN GGT V YG ADR +E++++A+AR F +P+C NTE+ +F D Sbjct 1259 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPECVSSNTEMYLIFRQLD 1318 Query 766 NGNHLR-DQDQLSIVLNNIYQGS 787 N + L+ V++++Y+G+ Sbjct 1319 NSRTRQFTPHHLNCVISSVYEGT 1341 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; AltName: Full=p270 nonstructural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sindbis virus] Sequence ID: P03317.2 Length: 2513 Range 1: 543 to 1341 Score:873 bits(2256), Expect:0.0, Method:Compositional matrix adjust., Identities:440/803(55%), Positives:556/803(69%), Gaps:22/803(2%) Query 3 VETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 62 VETPR H+++ + IG Y V+SP +VL + KLA HPLA+QV ++TH GR+GRY V Sbjct 543 VETPRGHVRIIPQANDRMIGQYIVVSPNSVLKNAKLAPAHPLADQVKIITHSGRSGRYAV 602 Query 63 EPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYYKV 122 EPY +V++P+G A+P P+F ALSESAT+VYNEREFVNR L+HIA++G A NT+EE YKV Sbjct 603 EPYDAKVLMPAGGAVPWPEFLALSESATLVYNEREFVNRKLYHIAMHGPAKNTEEEQYKV 662 Query 123 LRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPTI 182 ++ A++EYVFD+D ++CVKK +A + L GEL +PP+HE A E LKTRPA P+KV TI Sbjct 663 TKAELAETEYVFDVDKKRCVKKEEASGLVLSGELTNPPYHELALEGLKTRPAVPYKVETI 722 Query 183 GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLNGV 242 GV G PGSGKS IIKS VT RDLV S KKENC EI DV R+RGM I ++TVDSV+LNG Sbjct 723 GVIGTPGSGKSAIIKSTVTARDLVTSGKKENCREIEADVLRLRGMQITSKTVDSVMLNGC 782 Query 243 KHPVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---E 298 V+ LY+DEAFACHAG LLALIAIV+P KKVVLCGDP QCGFFNMM LKVHFNH + Sbjct 783 HKAVEVLYVDEAFACHAGALLALIAIVRPRKKVVLCGDPMQCGFFNMMQLKVHFNHPEKD 842 Query 299 ICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTC 358 ICT+ ++K ISRRCT+ VTAIVSTL YD +M+T NPC I ID T TKP+ DIILTC Sbjct 843 ICTKTFYKYISRRCTQPVTAIVSTLHYDGKMKTTNPCKKNIEIDITGATKPKPGDIILTC 902 Query 359 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEK 418 FRGWVKQLQIDY HE+MTAAASQGLTRKGVYAVR KVNENPLYA TSEHVNVLLTRTE Sbjct 903 FRGWVKQLQIDYPGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAITSEHVNVLLTRTED 962 Query 419 RIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCW 478 R+VWKTL GDPWIK T G F AT+E+W+AEH I+ I ++ + K +VCW Sbjct 963 RLVWKTLQGDPWIKQPTNIPKGNFQATIEDWEAEHKGIIAAINSPTPRANPFSCKTNVCW 1022 Query 479 AKALEPVLATANITLTRSQW-ETIPAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPT 537 AKALEP+LATA I LT QW E P F DDK S AL+ +C +FFG+D+ SGLFS + Sbjct 1023 AKALEPILATAGIVLTGCQWSELFPQFADDKPHSAIYALDVICIKFFGMDLTSGLFSKQS 1082 Query 538 VPLTY-------TNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTI 590 +PLTY HWDNSPG +YG A EL+RR+P + + G D++T Sbjct 1083 IPLTYHPADSARPVAHWDNSPGTRKYGYDHAIAAELSRRFP-VFQLAGKGTQLDLQTGRT 1141 Query 591 KDYSPLINVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTP-ISVPGKRVE 649 + S N+VP+NR LPH+LV ++ G + L++ +VLV+ I P KR+E Sbjct 1142 RVISAQHNLVPVNRNLPHALVPEYKEKQPGPVKKFLNQFKHHSVLVVSEEKIEAPRKRIE 1201 Query 650 TLGP----GPQCTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTR 705 + P G Y +L G P +YD++F+N+ T Y++HH+QQCEDHA L+R Sbjct 1202 WIAPIGIAGADKNY--NLAFGFPPQ-ARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSR 1258 Query 706 KAVDHLNKGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKD 765 A++ LN GGT V YG ADR +E++++A+AR F +P C NTE+ +F D Sbjct 1259 SALNCLNPGGTLVVKSYGYADRNSEDVVTALARKFVRVSAARPDCVSSNTEMYLIFRQLD 1318 Query 766 NGNHLR-DQDQLSIVLNNIYQGS 787 N + L+ V++++Y+G+ Sbjct 1319 NSRTRQFTPHHLNCVISSVYEGT 1341 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123'; Short=P123'; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3'; Short=nsP3'; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Aura virus] Sequence ID: Q86924.3 Length: 2499 Range 1: 542 to 1336 Score:816 bits(2108), Expect:0.0, Method:Compositional matrix adjust., Identities:423/798(53%), Positives:541/798(67%), Gaps:19/798(2%) Query 3 VETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACIHPLAEQVLVMTHKGRAGRYKV 62 VETPR IK+ G+ IGSY V+SP AVL +++L IH LAEQV ++TH GR GRY V Sbjct 542 VETPRGKIKIIPQEGDVRIGSYTVISPAAVLRNQQLEPIHELAEQVKIITHGGRTGRYSV 601 Query 63 EPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYYKV 122 EPY +V++P+G + F ALSESAT+VYNEREF+NR LHHIA G A NT+EE YKV Sbjct 602 EPYDAKVLLPTGCPMSWQHFAALSESATLVYNEREFLNRKLHHIATKGAAKNTEEEQYKV 661 Query 123 LRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPTI 182 ++ + D EYV+D+DARKCVK+ A + LVGEL +PP+HE AYE L+TRPAAP+ + T+ Sbjct 662 CKAKDTDHEYVYDVDARKCVKREHAQGLVLVGELTNPPYHELAYEGLRTRPAAPYHIETL 721 Query 183 GVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLNGV 242 GV G PGSGKS IIKS VT +DLV S KKENC EI DV++MRGM IA RTVDSVLLNG Sbjct 722 GVIGTPGSGKSAIIKSTVTLKDLVTSGKKENCKEIENDVQKMRGMTIATRTVDSVLLNGW 781 Query 243 KHPVDTLYIDEAFACHAGTLLALIAIVKP-KKVVLCGDPKQCGFFNMMCLKVHFNH---E 298 K VD LY+DEAFACHAGTL+ALIAIVKP +KVVLCGDPKQ FFN+M LKV+FN+ + Sbjct 782 KKAVDVLYVDEAFACHAGTLMALIAIVKPRRKVVLCGDPKQWPFFNLMQLKVNFNNPERD 841 Query 299 ICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTC 358 +CT ++K ISRRCT+ VTAIVSTL YD +MRT NPC I ID +TKP++ DI+LTC Sbjct 842 LCTSTHYKYISRRCTQPVTAIVSTLHYDGKMRTTNPCKRAIEIDVNGSTKPKKGDIVLTC 901 Query 359 FRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEK 418 FRGWVKQ QIDY AASQGLTR+GVYAVR KVNENPLYA+ SEHVNVLLTRTE Sbjct 902 FRGWVKQGQIDYPGPGGHDRAASQGLTRRGVYAVRQKVNENPLYAEKSEHVNVLLTRTED 961 Query 419 RIVWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASSDVYQNKVHVCW 478 RIVWKTL GDPWIK LT G F+ATLEEWQAEH+ IM+ I T SD + +KV+ CW Sbjct 962 RIVWKTLQGDPWIKYLTNVPKGNFTATLEEWQAEHEDIMKAINSTSTVSDPFASKVNTCW 1021 Query 479 AKALEPVLATANITLTRSQWETI-PAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPT 537 AKA+ P+L TA I LT QWE + P F++D+ +S AL+ +CT+ FG+D+ SG+FS P Sbjct 1022 AKAIIPILRTAGIELTFEQWEDLFPQFRNDQPYSVMYALDVICTKMFGMDLSSGIFSRPE 1081 Query 538 VPLTY-------TNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGRLADVRTNTI 590 +PLT+ HWDNSPG ++G + ++YP L+A ++ + + Sbjct 1082 IPLTFHPADVGRVRAHWDNSPGGQKFGY-NKAVIPTCKKYPVYLRAGKGDQILPI-YGRV 1139 Query 591 KDYSPLINVVPLNRRLPHSLVVSHRYTGDGNYSQLLSKLIGKTVLVIGTPIS-VPGKRVE 649 S N+VPLNR LPHSL S + + L++L G ++L++ KR+ Sbjct 1140 SVPSARNNLVPLNRNLPHSLTASLQKKEAAPLHKFLNQLPGHSMLLVSKETCYCVSKRIT 1199 Query 650 TLGP-GPQ-CTYKADLDLGIPSTIGKYDIIFVNVRTPYKHHHYQQCEDHAIHHSMLTRKA 707 + P G + + DL G P + +YD++ VN+ PY+ HHYQQCE+HA L R A Sbjct 1200 WVAPLGVRGADHNHDLHFGFPP-LSRYDLVVVNMGQPYRFHHYQQCEEHAGLMRTLARSA 1258 Query 708 VDHLNKGGTCVALGYGTADRATENIISAVARSFRFSRVCQPKCAWENTEVAFVFFGKDNG 767 ++ L GGT YG AD +E+++ ++AR F + +P C NTE+ FVF DN Sbjct 1259 LNCLKPGGTLALKAYGFADSNSEDVVLSLARKFVRASAVRPSCTQFNTEMFFVFRQLDND 1318 Query 768 NHLR-DQDQLSIVLNNIY 784 + Q L++ ++NI+ Sbjct 1319 RERQFTQHHLNLAVSNIF 1336 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Salmon pancreas disease virus] Sequence ID: Q8JJX1.1 Length: 2601 Range 1: 567 to 1390 Score:620 bits(1599), Expect:0.0, Method:Compositional matrix adjust., Identities:348/826(42%), Positives:487/826(58%), Gaps:46/826(5%) Query 3 VETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLA-CIHPLAEQVLVMTHKGRAGRYK 61 ++ R +KV T G+ +G Y VLSP VL + KLA + PLAE+V+ HKGR GRY Sbjct 567 IDCQRGTVKVITAFGDNMMGEYLVLSPVTVLRTRKLAILLGPLAEEVMQYVHKGRTGRYA 626 Query 62 VEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYYK 121 +E + +V++P+G ++ FQAL+ESAT+ YN+ F R L +A G A NTDE YYK Sbjct 627 IEKNNLKVLIPTGVSLKTDHFQALAESATLTYNDYLFTCRTLDQLATRGSARNTDEVYYK 686 Query 122 VLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPT 181 ++ +++A EYV+++ +++CVKK DA L G++ +PP+H+FAYE+L+ RPA H V T Sbjct 687 LVDAAKARDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAYEALRKRPAHTHDVHT 746 Query 182 IGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLNG 241 IG+YGVPG+GK+ II + VT RDLV S KKENC +I + V RG+ IAARTVDS+ Sbjct 747 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLFYGA 806 Query 242 VKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 + V+TLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+NHEI Sbjct 807 YRGAVNTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 866 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 V K+ISRRCT T+TAIVS L Y+ RM+T NPC ++IDTT +TKP ++ ++LTCFR Sbjct 867 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 926 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVK L+ Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT + Sbjct 927 GWVKDLKFLYPHNELMTAAASQGLTREKVYAVRCRVTTNPLYEPTSEHITVLLTRTNDEL 986 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASS-DVYQNKVHVCWA 479 VWKTL DP I L+ G++SAT+E+W+ EH+ I+ + E + K + CWA Sbjct 987 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCWA 1046 Query 480 KALEPVLATANITLTRSQWETI-PAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 VL A + +T + I PAF++DK S AL+ + T +G+D SG+ S Sbjct 1047 VTSSRVLHEAGVQITPEDYNRIFPAFREDKPHSALAALDAVATLVWGLDTSSGILSGKGS 1106 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGR---LADVRTNTIKDYSP 595 + N HW NS YGL + + P ++KA+ R D+ T + P Sbjct 1107 FMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPLDP 1166 Query 596 LINVVPLNRRLPHSLV----------VSHRYTGDG-------------NYSQLLSKLIGK 632 VP+NR +PH LV + +R T D +++L ++ Sbjct 1167 ARVQVPINRIVPHVLVDTSAAAKPGFLENRLTVDRWDQVHSFKTRAAVKFAELTKRVSYN 1226 Query 633 TVLVIG-TPISV------PGKRVETLG------PGPQCTYKADLDLGIPSTIGKYDIIFV 679 +VL +G P V GK V ++ P AD++ G + +G +D++F Sbjct 1227 SVLDLGAAPGGVTDYCVKKGKTVTSVSEQWDTKPRGAVVVTADIN-GPLNNLGIFDLVFC 1285 Query 680 NVRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVALGYGTADRATENIISAVARS 739 + P ++HHY QCEDHA+ + + V+ KGG + YG ADR TE + AR Sbjct 1286 DAAGPRRYHHYAQCEDHAVLFTSACKHGVERTAKGGVFIVKAYGMADRRTERAVEGTARY 1345 Query 740 FRFSRVCQPKCA-WENTEVAFVFFGKDNGNHLRDQDQLSIVLNNIY 784 FR V +P + N EV F F G+ H R L L +IY Sbjct 1346 FRSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 1390 >RecName: Full=Polyprotein P1234; Short=P1234; AltName: Full=Non-structural polyprotein; Contains: RecName: Full=Polyprotein P123; Short=P123; Contains: RecName: Full=mRNA-capping enzyme nsP1; AltName: Full=Non-structural protein 1; Contains: RecName: Full=Protease nsP2; AltName: Full=Non-structural protein 2; Short=nsP2; Contains: RecName: Full=Non-structural protein 3; Short=nsP3; Contains: RecName: Full=RNA-directed RNA polymerase nsP4; AltName: Full=Non-structural protein 4; Short=nsP4 [Sleeping disease virus] Sequence ID: Q8QL53.1 Length: 2593 Range 1: 566 to 1389 Score:612 bits(1579), Expect:0.0, Method:Compositional matrix adjust., Identities:346/825(42%), Positives:484/825(58%), Gaps:44/825(5%) Query 3 VETPRRHIKVTTYPGEETIGSYAVLSPQAVLNSEKLACI-HPLAEQVLVMTHKGRAGRYK 61 ++ R +KV T G+ T+G Y VLSP VL + KLA + PLAE+V+ HKGR GRY Sbjct 566 IDCQRGTVKVITAFGDNTMGEYLVLSPVTVLRTRKLAVLLGPLAEEVMQYVHKGRTGRYA 625 Query 62 VEPYHGRVVVPSGTAIPIPDFQALSESATIVYNEREFVNRYLHHIAINGGAINTDEEYYK 121 +E + +V++P+G ++ FQAL+ESAT+ YN+ F R L +A G A NTDE YYK Sbjct 626 IEKNNLKVLIPTGVSLKTAHFQALTESATLTYNDYLFTCRTLDQLATRGSAKNTDEVYYK 685 Query 122 VLRSSEADSEYVFDIDARKCVKKADAGPMCLVGELVDPPFHEFAYESLKTRPAAPHKVPT 181 ++ +++A EYV+++ +++CVKK DA L G++ +PP+H+FA+E+L+ RPA H V T Sbjct 686 LVDAAKAKDEYVYELSSKQCVKKEDATGTVLQGDICNPPYHQFAFEALRKRPAHTHDVHT 745 Query 182 IGVYGVPGSGKSGIIKSAVTKRDLVVSAKKENCTEIIKDVKRMRGMDIAARTVDSVLLNG 241 IG+YGVPG+GK+ II + VT RDLV S KKENC +I + V RG+ IAARTVDS+L Sbjct 746 IGIYGVPGAGKTAIITTEVTTRDLVASGKKENCEDIKRCVLERRGLKIAARTVDSLLYGA 805 Query 242 VKHPVDTLYIDEAFACHAGTLLALIAIVKPK-KVVLCGDPKQCGFFNMMCLKVHFNHEIC 300 + VDTLY+DEA+ACH+GTLLALIA V+P KVVLCGDPKQ G N + +++H+NHEI Sbjct 806 YRGAVDTLYVDEAYACHSGTLLALIAAVRPTGKVVLCGDPKQVGCVNQLQMRMHYNHEIS 865 Query 301 TEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTSTTKPQRDDIILTCFR 360 V K+ISRRCT T+TAIVS L Y+ RM+T NPC ++IDTT +TKP ++ ++LTCFR Sbjct 866 DRVLRKNISRRCTHTLTAIVSNLNYEGRMKTTNPCKKPVLIDTTGSTKPDKEALVLTCFR 925 Query 361 GWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHVNVLLTRTEKRI 420 GWVK L+I Y ++E+MTAAASQGLTR+ VYAVR +V NPLY TSEH+ VLLTRT + Sbjct 926 GWVKDLKILYPHNELMTAAASQGLTREKVYAVRCRVTSNPLYEPTSEHITVLLTRTNDEL 985 Query 421 VWKTLAGDPWIKTLTAHYPGEFSATLEEWQAEHDAIMERILETPASS-DVYQNKVHVCWA 479 VWKTL DP I L+ G++SAT+E+W+ EH+ I+ + E + K + CWA Sbjct 986 VWKTLPNDPLIPILSKPPKGDYSATMEDWEDEHNGILAALREACVPRMNFAHGKRNTCWA 1045 Query 480 KALEPVLATANITLTRSQWETI-PAFKDDKAFSPEMALNFLCTRFFGVDIDSGLFSAPTV 538 VL A + +T + I PAF++DK S AL+ + +G+D SG+ S Sbjct 1046 VTSSRVLHEAGVLITPEDFNRIFPAFREDKPHSALAALDAVAALVWGLDTSSGILSGKGS 1105 Query 539 PLTYTNEHWDNSPGPNRYGLCMRTAKELARRYPCILKAVDTGR---LADVRTNTIKDYSP 595 + N HW NS YGL + + P ++KA+ R D+ T + P Sbjct 1106 FMRLENSHWSNSNRGYEYGLNLDALEGYEIANPRMIKALKQRRGRECYDIETGKLVPMDP 1165 Query 596 LINVVPLNRRLPHSLV----------VSHRYTGDG-------------NYSQLLSKLIGK 632 VP+NR +PH LV + +R + D +++L ++ Sbjct 1166 GRVQVPINRVVPHVLVDTSAAAKPGFLENRLSVDRWDQVHSFKTRAAVKFAELTKRVSYN 1225 Query 633 TVLVIGTPIS-------VPGKRV----ETLGPGPQCTYKADLDLGIP-STIGKYDIIFVN 680 +VL +G GK V E P+ D+ P + +G +D++F + Sbjct 1226 SVLDLGAARGGVTDYCVKKGKTVTCVSEQWDSKPRGAVVITADINGPLNNLGIFDLVFCD 1285 Query 681 VRTPYKHHHYQQCEDHAIHHSMLTRKAVDHLNKGGTCVALGYGTADRATENIISAVARSF 740 P ++HHY QCEDHA + + V+ KGG + YG ADR TE + AR F Sbjct 1286 AAGPRRYHHYAQCEDHARRSTSACKHGVERTAKGGVFIVKAYGMADRRTERAVECTARYF 1345 Query 741 RFSRVCQPKCA-WENTEVAFVFFGKDNGNHLRDQDQLSIVLNNIY 784 + V +P + N EV F F G+ H R L L +IY Sbjct 1346 KSVSVEKPVSSRITNVEVFFKFSGRCR-PHARSIAHLGPQLTDIY 1389 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Singapore 1)] Sequence ID: Q84133.2 Length: 1612 Range 1: 824 to 1089 Score:77.4 bits(189), Expect:3e-13, Method:Compositional matrix adjust., Identities:74/267(28%), Positives:119/267(44%), Gaps:19/267(7%) Query 184 VYGVPGSGKSG-IIKSAVTKRDLVVSAKKENCTEIIKDVKR---MRGMDIAARTVDSVLL 239 V GVPG GK+ I+++ DL++ KE C IIK + +R RTVDS L+ Sbjct 824 VDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHVRATRDNVRTVDSFLM 883 Query 240 NGVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMCLKVHFNHEI 299 + + L+IDE H G + L+A+ ++ ++ GD +Q F N + + H Sbjct 884 HLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVANFPYPKHFR 943 Query 300 CTEVYHKSISR---RCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTS-------TTKP 349 T +YH+ + R RC VT +++ YD ++ N + + +KP Sbjct 944 YTCLYHREVRRLSLRCPADVTHFMNSK-YDGKVLCTNDVIRSVDAEVVRGKGVFNPKSKP 1002 Query 350 QRDDIILTCFRGWVKQLQIDYKN----HEIMTAAASQGLTRKGVYAVRYKVNENPLYAQT 405 + II + + Y+ EI T QG T + V VR L +++ Sbjct 1003 LKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLELISKS 1062 Query 406 SEHVNVLLTRTEKRIVWKTLAGDPWIK 432 S HV V LTR K + ++ DP +K Sbjct 1063 SPHVLVALTRHTKSFKYYSVVLDPLVK 1089 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Odontoglossum ringspot virus (isolate Korean Cy)] Sequence ID: P89659.2 Length: 1612 Range 1: 809 to 1089 Score:75.1 bits(183), Expect:2e-12, Method:Compositional matrix adjust., Identities:78/283(28%), Positives:121/283(42%), Gaps:21/283(7%) Query 169 LKTRPAAPHKVPTIGVYGVPGSGKSG-IIKSAVTKRDLVVSAKKENCTEIIKDVKR---M 224 LK P V GVPG GK+ I+++ DL++ KE C IIK + + Sbjct 809 LKDGEPVPSDAKVTLVDGVPGCGKTKEILETVNFDEDLILVPGKEACKMIIKRANKSGHV 868 Query 225 RGMDIAARTVDSVLLNGVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCG 284 R RTVDS L++ + L+IDE H G + LIA+ ++ ++ GD +Q Sbjct 869 RATKDNVRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIP 928 Query 285 FFNMMCLKVHFNHEICTEVY-HKSISR---RCTKTVTAIVSTLFYDKRMRTVNPCSDKII 340 F N + + T VY H+ + R RC VT +++ YD ++ N + Sbjct 929 FINRVA-NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNSK-YDGKVLCTNDVIRSVD 986 Query 341 IDTTS-------TTKPQRDDIILTCFRGWVKQLQIDYKN----HEIMTAAASQGLTRKGV 389 + +KP + II + + Y+ EI T QG T + V Sbjct 987 AEVVRGKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046 Query 390 YAVRYKVNENPLYAQTSEHVNVLLTRTEKRIVWKTLAGDPWIK 432 VR L +++S HV V LTR K + ++ DP +K Sbjct 1047 SVVRLTPTPLELISKSSPHVLVALTRHTKSFKYYSVVLDPLVK 1089 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Tobacco mild green mosaic virus] Sequence ID: P18339.2 Length: 1609 Range 1: 815 to 1090 Score:58.9 bits(141), Expect:2e-07, Method:Compositional matrix adjust., Identities:72/280(26%), Positives:113/280(40%), Gaps:21/280(7%) Query 172 RPAAPHKVPT---IGVYGVPGSGK-SGIIKSAVTKRDLVVSAKKENCTEIIKDVKR---M 224 R PH+ PT + V GVPG GK G + DL++ K+ I + + Sbjct 815 RDGEPHE-PTAKMVLVDGVPGCGKYKGDFERFDLDEDLILVPGKQAAAMIRRRANSSGLI 873 Query 225 RGMDIAARTVDSVLLNGVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCG 284 R RTVDS+L++ L+IDE H G + L+ I + GD +Q Sbjct 874 RATMDNVRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIP 933 Query 285 FFNMMC---LKVHFNHEICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIII 341 F N + HF EV + + RC V + + Y+ + T + + Sbjct 934 FINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSK-YEGAVTTTSTVQRSVSS 992 Query 342 DT-------TSTTKPQRDDIILTCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRY 394 + S +KP + I+ + + YKN + T QG T + V VR Sbjct 993 EMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEKGYKN--VNTVHEIQGETFEDVSLVRL 1050 Query 395 KVNENPLYAQTSEHVNVLLTRTEKRIVWKTLAGDPWIKTL 434 L +++S HV V LTR K + T+ DP ++ + Sbjct 1051 TATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQII 1090 >RecName: Full=Replicase large subunit; AltName: Full=183 kDa protein; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Replicase small subunit; AltName: Full=126 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Turnip vein-clearing virus] Sequence ID: Q88920.1 Length: 1601 Range 1: 814 to 1087 Score:55.8 bits(133), Expect:1e-06, Method:Compositional matrix adjust., Identities:68/278(24%), Positives:109/278(39%), Gaps:18/278(6%) Query 172 RPAAPHKVPTIGVYGVPGSGKSG-IIKSAVTKRDLVVSAKKENCTEIIKDVKR---MRGM 227 P P+ I V GVPG GK+ II+ DL++ KE II+ + +R Sbjct 814 EPPEPN-AKVILVDGVPGCGKTKEIIEKVNFSEDLILVPGKEASKMIIRRANQAGVIRAD 872 Query 228 DIAARTVDSVLLNGVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFN 287 RTVDS L++ + L+IDE H G + L+ + + + GD KQ F Sbjct 873 KDNVRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFIC 932 Query 288 MMC---LKVHFNHEICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTT 344 + HF + E + ++ RC VT ++ YD + + + + Sbjct 933 RVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKK-YDGAVMCTSAVERSVKAEVV 991 Query 345 S-------TTKPQRDDIILTCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVN 397 T P I+ + L+ YK ++ T QG T + VR Sbjct 992 RGKGALNPITLPLEGKILTFTQADKFELLEKGYK--DVNTVHEVQGETYEKTAIVRLTST 1049 Query 398 ENPLYAQTSEHVNVLLTRTEKRIVWKTLAGDPWIKTLT 435 + + S HV V LTR + T+ DP + ++ Sbjct 1050 PLEIISSASPHVLVALTRHTTCCKYYTVVLDPMVNVIS 1087 >RecName: Full=Replicase large subunit; AltName: Full=182 kDa protein; Contains: RecName: Full=Replicase small subunit; AltName: Full=125 kDa protein; AltName: Full=Methyltransferase/RNA helicase; Short=MT/HEL [Youcai mosaic virus] Sequence ID: Q66220.2 Length: 1597 Range 1: 821 to 1083 Score:52.8 bits(125), Expect:1e-05, Method:Compositional matrix adjust., Identities:65/266(24%), Positives:103/266(38%), Gaps:17/266(6%) Query 184 VYGVPGSGKSG-IIKSAVTKRDLVVSAKKENCTEIIKDVKR---MRGMDIAARTVDSVLL 239 V GVPG GK+ I++ DLV+ KE II+ + R RTVDS L+ Sbjct 821 VDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGITRADKDNVRTVDSFLM 880 Query 240 NGVKHPVDTLYIDEAFACHAGTLLALIAIVKPKKVVLCGDPKQCGFFNMMC---LKVHFN 296 + K L+IDE H G + L+ + + D +Q F + HF Sbjct 881 HPPKRVFKRLFIDEGLMLHTGCVNFLMLLSHCDVAYVYVDTQQIPFICRVANFPYPAHFA 940 Query 297 HEICTEVYHKSISRRCTKTVTAIVSTLFYDKRMRTVNPCSDKIIIDTTS-------TTKP 349 + E + ++ RC VT ++ YD + + + + T P Sbjct 941 KLVVDEKEDRRVTLRCPADVTYFLNQK-YDGSVLCTSSVERSVSAEVVRGKGALNPITLP 999 Query 350 QRDDIILTCFRGWVKQLQIDYKNHEIMTAAASQGLTRKGVYAVRYKVNENPLYAQTSEHV 409 I+ + L YK ++ T QG T + VR + ++ S HV Sbjct 1000 LEGKILTFTQADKFELLDKGYK--DVNTVHEVQGETYEKTAIVRLTATPLEIISRASPHV 1057 Query 410 NVLLTRTEKRIVWKTLAGDPWIKTLT 435 V LTR R + T+ DP + ++ Sbjct 1058 LVALTRHTTRCKYYTVVLDPMVNVIS 1083