FastQCFastQC Report
Ñð 15 íîÿ 2017
chr11.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenamechr11.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4198
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATAGCTATGTATCAGCATCCTAATGATTCTCTCTTCACAAGTCACCT70.16674606955693186No Hit
ACTGTGTACCCATGGAGCCTACTGTCACATCATCTCATTAATGTTGGATG60.14292520247737017No Hit
AAAAAACAGTATGAGCCTAAATTGGTCTCTGCACTTTCATATTTTTACCT50.11910433539780849No Hit
CATCCTAATGATTCTCTCTTCACAAGTCACCTCCAGCTGATGATTCCCAG50.11910433539780849No Hit
AACAGGAAAGAGAGGGGGACCCTATGGCCAACTTCATCAAGAAGAATAAG50.11910433539780849No Hit
ACTCCCAGCCTTCGCCTTCATCCAATACTAATAAATAACCTACAGAAAGA50.11910433539780849No Hit
AGCTGAATTTCAATATGCTGAAACCGTATTTCGAGATAAGTCTGGTCGTA50.11910433539780849No Hit
ACATACAGCGAGAACAGCAGGAGCTCAAGGAACAGGATCAAGAAACCATG50.11910433539780849No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)