RID: ZZ2YDVDH013 Job Title:POLG_POL1M P03300 RNA-directed RNA polymerase... Program: BLASTP Query: POLG_POL1M P03300 RNA-directed RNA polymerase (2.7.7.48) (RdRp) ID: lcl|Query_2402429(amino acid) Length: 461 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12081 967 967 100% 0.0 100.00 2209 P03300.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12084 963 963 100% 0.0 98.92 2207 P06210.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human poliov... NA 12082 961 961 100% 0.0 99.13 2209 P03301.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 36404 960 960 100% 0.0 98.26 2214 P36290.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 12070 959 959 100% 0.0 98.48 2206 P22055.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12088 957 957 100% 0.0 98.26 2206 P03302.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P3;... Poliovirus t... NA 12087 956 956 100% 0.0 98.26 2206 P06209.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Poliovirus t... NA 12085 952 952 100% 0.0 98.26 2205 P23069.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 6 ... NA 103913 747 747 100% 0.0 74.24 2191 Q66474.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 30... NA 176284 746 746 100% 0.0 74.24 2194 Q9WN78.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103904 744 744 100% 0.0 74.68 2185 Q66282.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 12068 743 743 100% 0.0 74.24 2201 P21404.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 5 ... NA 176283 742 742 100% 0.0 74.46 2196 Q9YLJ1.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 9 ... NA 103914 740 740 100% 0.0 73.81 2203 Q66577.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 9 ... NA 103915 739 739 100% 0.0 74.03 2193 Q66849.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231474 739 739 100% 0.0 73.81 2184 Q9QL88.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Swine vesicu... NA 12077 738 738 100% 0.0 73.81 2185 P13900.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Swine vesicu... NA 12076 737 737 100% 0.0 73.59 2185 P16604.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P3;... Coxsackievir... NA 103902 735 735 100% 0.0 73.59 2182 P08291.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 31915 734 734 97% 0.0 77.30 2194 P32537.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 1 ... NA 103908 731 731 100% 0.0 73.81 2184 O91734.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231473 731 731 100% 0.0 74.03 2187 Q9YLG5.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103906 730 730 100% 0.0 73.81 2183 P08292.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103907 730 730 100% 0.0 74.46 2185 Q03053.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 11... NA 31705 729 729 100% 0.0 73.38 2195 P29813.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Echovirus 12... NA 103909 729 729 100% 0.0 74.03 2193 Q66575.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103903 726 726 100% 0.0 74.03 2185 P03313.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... enterovirus D68 NA 42789 718 718 97% 0.0 74.38 2188 Q68T42.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 103905 711 711 100% 0.0 71.86 2183 Q86887.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Porcine ente... NA 64141 699 699 100% 0.0 70.93 2168 O41174.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Coxsackievir... NA 231417 685 685 100% 0.0 68.40 2193 Q9QF31.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human coxsac... NA 69159 684 684 100% 0.0 68.40 2193 Q65900.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Enterovirus A71 NA 39054 682 682 100% 0.0 67.97 2193 B9VUU3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 103922 677 677 100% 0.0 67.32 2193 Q66479.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human entero... NA 69153 671 671 100% 0.0 67.32 2193 Q66478.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Bovine enter... NA 12065 669 669 100% 0.0 68.33 2175 P12915.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus B14 NA 12131 642 642 100% 0.0 64.43 2179 P03303.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus B3 NA 44130 637 637 98% 0.0 65.04 2178 Q82081.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus C15 NA 1418033 571 571 100% 0.0 57.70 2153 E5D8F2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human rhinov... NA 12134 567 567 100% 0.0 57.36 2157 P23008.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A1B NA 2777147 561 561 100% 0.0 56.71 2157 P12916.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A2 NA 12130 558 558 100% 1e-180 56.93 2150 P04936.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... rhinovirus A16 NA 31708 552 552 100% 3e-178 55.84 2153 Q82122.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1;... Human rhinov... NA 650130 526 526 97% 9e-169 58.04 2164 P07210.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Mengo virus NA 12107 253 253 97% 5e-73 31.59 2293 P12296.3 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 248 248 97% 5e-71 31.15 2292 P17594.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 247 247 97% 7e-71 30.72 2292 P17593.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... cardiovirus A1 NA 2870365 246 246 97% 2e-70 30.72 2292 Q66765.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12104 246 246 97% 2e-70 30.72 2290 P03304.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Aichi virus ... NA 650132 243 243 98% 2e-69 35.47 2432 O91464.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12125 238 238 97% 1e-67 31.67 2303 P08544.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Seneca Valle... NA 686944 235 235 96% 1e-66 33.19 2181 Q155Z9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's en... NA 12126 234 234 97% 2e-66 31.97 2301 P13899.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Theiler's mu... NA 12127 233 233 97% 5e-66 31.02 2303 P08545.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Saffold virus NA 434309 231 231 97% 3e-65 30.65 2295 C0MHL9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 73481 229 229 95% 2e-64 32.54 2336 P49303.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Human klasse... NA 655603 228 228 97% 4e-64 32.61 2370 C6KEF6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12113 228 228 95% 4e-64 32.46 2332 P03307.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 110195 227 227 95% 6e-64 32.46 2329 A2I7M2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12115 227 227 95% 6e-64 32.46 2333 P03309.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12117 227 227 95% 7e-64 32.46 2328 P03310.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12121 227 227 95% 8e-64 32.46 2327 P15072.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12118 226 226 95% 2e-63 32.46 2332 P03305.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12114 226 226 95% 2e-63 32.24 2333 P03308.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12120 225 225 95% 4e-63 32.24 2327 P03311.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Foot-and-mou... NA 12112 223 223 95% 1e-62 32.10 2332 P03306.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Salivirus NG-J1 NA 651733 223 223 94% 2e-62 32.67 2374 C5MSH2.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Cosavirus A ... NA 1554483 218 218 97% 5e-61 31.74 2124 B8XTP8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470593 156 156 92% 1e-39 28.98 2228 Q9DWR1.4 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470591 153 153 92% 1e-38 27.83 2225 Q5Y944.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 474341 151 151 92% 4e-38 28.48 2228 A5LGW7.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470423 148 148 92% 5e-37 28.91 2227 A3FMB2.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470592 147 147 92% 8e-37 27.17 2227 Q8V0N6.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... parechovirus B1 NA 1001061 146 146 96% 2e-36 28.88 2253 Q8JV21.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470424 146 146 92% 3e-36 28.70 2052 Q05794.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12100 145 145 92% 4e-36 28.70 2227 P13901.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12098 145 145 92% 4e-36 28.91 2227 P08617.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 470422 145 145 92% 5e-36 28.91 2227 Q67825.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Human hepati... NA 12099 144 144 92% 9e-36 28.48 2227 P06441.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Echovirus 22... NA 103911 125 125 90% 3e-29 27.73 2180 Q66578.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... Echovirus 23... NA 122962 122 122 90% 2e-28 27.05 2179 O73556.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Caps... HPeV 5 strai... NA 122961 120 120 90% 7e-28 27.27 2188 Q9YID8.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Feline calic... NA 11980 92.0 92.0 96% 2e-18 26.81 1763 P27408.2 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337080 85.5 85.5 95% 3e-16 23.73 3471 Q91PP5.1 RecName: Full=Genome polyprotein; Contains: RecName:... Rice tungro ... NA 337081 85.5 85.5 95% 3e-16 23.73 3473 Q83034.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1;... Feline calic... NA 11979 82.8 82.8 97% 2e-15 25.20 1762 P27407.3 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine ch... NA 12273 80.9 80.9 91% 9e-15 22.38 2252 P13025.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Andean potat... NA 12259 77.8 77.8 79% 5e-14 24.64 729 Q02941.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Southampton ... NA 37129 72.0 72.0 95% 6e-12 25.41 1788 Q04544.2 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314537 70.9 70.9 74% 1e-11 25.40 2344 Q89273.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato black... NA 283677 70.9 70.9 80% 1e-11 24.12 2266 Q8B8X3.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Norovirus Hu... NA 524364 68.9 68.9 95% 4e-11 25.00 1789 Q83883.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314538 68.6 68.6 74% 6e-11 25.40 2344 Q86119.2 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... European bro... NA 316979 67.8 67.8 75% 1e-10 26.18 2334 Q96725.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314535 67.4 67.4 74% 1e-10 25.40 2344 Q86117.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 314536 67.4 67.4 74% 1e-10 25.40 2344 P27410.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Raspberry ri... NA 281921 67.0 67.0 69% 2e-10 21.39 2367 Q6W8W4.1 RecName: Full=Genome polyprotein; AltName: Full=p254; Contains... Rabbit hemor... NA 11977 64.7 64.7 74% 9e-10 25.94 2344 P27411.2 RecName: Full=RNA1 polyprotein; Contains: RecName:... Tomato torra... NA 686948 63.5 63.5 77% 3e-09 24.07 2158 A1XIP9.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-... Lordsdale virus NA 82658 49.7 49.7 86% 5e-05 24.06 1699 P54634.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cherry rasp ... NA 650137 47.8 47.8 90% 2e-04 23.33 2250 Q6EWG9.1 Alignments: >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 Mahoney] Sequence ID: P03300.3 Length: 2209 Range 1: 1749 to 2209 Score:967 bits(2501), Expect:0.0, Method:Compositional matrix adjust., Identities:461/461(100%), Positives:461/461(100%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS Sbjct 1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 1808 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1809 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1868 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1869 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1928 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1929 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1988 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1989 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2048 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2049 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2108 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2109 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2168 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2169 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 2 strain Lansing] Sequence ID: P06210.3 Length: 2207 Range 1: 1747 to 2207 Score:963 bits(2489), Expect:0.0, Method:Compositional matrix adjust., Identities:456/461(99%), Positives:461/461(100%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKEVGYP+INAPSKTKLEPSAFHYVFEGVKEPAVLTK+DPRLKTDFEEAIFS Sbjct 1747 GEIQWMRPSKEVGYPVINAPSKTKLEPSAFHYVFEGVKEPAVLTKSDPRLKTDFEEAIFS 1806 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1807 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1866 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDILNKQTRDTKEMQ+LLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1867 VAMGKKKRDILNKQTRDTKEMQRLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1926 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGV+TGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1927 LNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1986 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1987 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2046 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2047 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2106 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADEKYPFL+HPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2107 ATFETVTWENVTFLKRFFRADEKYPFLVHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2166 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2167 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2207 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human poliovirus 1 strain Sabin] Sequence ID: P03301.3 Length: 2209 Range 1: 1749 to 2209 Score:961 bits(2484), Expect:0.0, Method:Compositional matrix adjust., Identities:457/461(99%), Positives:460/461(99%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKT+FEEAIFS Sbjct 1749 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTNFEEAIFS 1808 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDE+MKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1809 KYVGNKITEVDEHMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1868 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1869 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1928 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1929 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1988 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEAL+MVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1989 LSPAWFEALEMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2048 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2049 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2108 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 A FETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2109 AIFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2168 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2169 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2209 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A24 EH24/70] Sequence ID: P36290.3 Length: 2214 Range 1: 1754 to 2214 Score:960 bits(2482), Expect:0.0, Method:Compositional matrix adjust., Identities:453/461(98%), Positives:459/461(99%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKEVGYP+INAPSKTKLEPS FH+VFEG KEPAVLTKNDPRLKTDFEEAIFS Sbjct 1754 GEIQWMRPSKEVGYPVINAPSKTKLEPSVFHHVFEGAKEPAVLTKNDPRLKTDFEEAIFS 1813 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1814 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1873 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDILNKQTRDTKEMQ+LLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1874 VAMGKKKRDILNKQTRDTKEMQRLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1933 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGV+TGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1934 LNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1993 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1994 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2053 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2054 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2113 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADEKYPFL+HPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2114 ATFETVTWENVTFLKRFFRADEKYPFLVHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2173 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEEEYNKFLAK+RSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2174 AWHNGEEEYNKFLAKVRSVPIGRALLLPEYSTLYRRWLDSF 2214 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A21 Coe] Sequence ID: P22055.3 Length: 2206 Range 1: 1746 to 2206 Score:959 bits(2478), Expect:0.0, Method:Compositional matrix adjust., Identities:454/461(98%), Positives:460/461(99%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMR SKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS Sbjct 1746 GEIQWMRSSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 1805 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1806 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1865 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDIL+KQTRDTKEMQ+LLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1866 VAMGKKKRDILDKQTRDTKEMQRLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1925 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGV+TGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1926 LNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1985 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFG+RVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1986 LSPAWFEALKMVLEKIGFGNRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2045 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLL+TYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2046 NNLIIRTLLLRTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2105 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADEKYPFL+HPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2106 ATFETVTWENVTFLKRFFRADEKYPFLVHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2165 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2166 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2206 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)] Sequence ID: P03302.3 Length: 2206 Range 1: 1746 to 2206 Score:957 bits(2475), Expect:0.0, Method:Compositional matrix adjust., Identities:453/461(98%), Positives:458/461(99%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKE GYPIINAP+KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS Sbjct 1746 GEIQWMRPSKEAGYPIINAPTKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 1805 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDI+TEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1806 KYVGNKITEVDEYMKEAVDHYAGQLMSLDISTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1865 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDILNKQTRDTKEMQ+LLD YGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1866 VAMGKKKRDILNKQTRDTKEMQRLLDAYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1925 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFH+NPGV+TGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1926 LNDSVAMRMAFGNLYAAFHRNPGVVTGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1985 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNK YCVKGGMPSGCSGTSIFNSMI Sbjct 1986 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKIYCVKGGMPSGCSGTSIFNSMI 2045 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2046 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2105 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2106 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2165 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2166 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2206 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 3 (strain 23127)] Sequence ID: P06209.3 Length: 2206 Range 1: 1746 to 2206 Score:956 bits(2472), Expect:0.0, Method:Compositional matrix adjust., Identities:453/461(98%), Positives:457/461(99%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPR KT FEEAIFS Sbjct 1746 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRFKTGFEEAIFS 1805 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1806 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1865 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V MGKKKRDILNKQTRDTKEMQ+LLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1866 VTMGKKKRDILNKQTRDTKEMQRLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1925 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGV+TGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS Sbjct 1926 LNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 1985 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1986 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2045 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2046 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2105 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADE+YPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2106 ATFETVTWENVTFLKRFFRADERYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2165 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGE+EYNKFLA IRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2166 AWHNGEDEYNKFLAMIRSVPIGRALLLPEYSTLYRRWLDSF 2206 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Poliovirus type 2 strain W-2] Sequence ID: P23069.3 Length: 2205 Range 1: 1747 to 2205 Score:952 bits(2462), Expect:0.0, Method:Compositional matrix adjust., Identities:453/461(98%), Positives:459/461(99%), Gaps:2/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWMRPSKEVGYP+INAPSKTKLEPSAFHYVFEGVKEPAVLTK+DPRLKTDFEEAIFS Sbjct 1747 GEIQWMRPSKEVGYPVINAPSKTKLEPSAFHYVFEGVKEPAVLTKSDPRLKTDFEEAIFS 1806 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY Sbjct 1807 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 1866 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMGKKKRDILNKQTRDTKEMQ+LLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS Sbjct 1867 VAMGKKKRDILNKQTRDTKEMQRLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 1926 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMRMAFGNLYAAFHKNPGV+TGSAVGCDPDLFWSKIPVLMEEKLF DYTGYDAS Sbjct 1927 LNDSVAMRMAFGNLYAAFHKNPGVVTGSAVGCDPDLFWSKIPVLMEEKLF--DYTGYDAS 1984 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI Sbjct 1985 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 2044 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS Sbjct 2045 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 2104 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 ATFETVTWENVTFLKRFFRADEKYPFL+HPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL Sbjct 2105 ATFETVTWENVTFLKRFFRADEKYPFLVHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 2164 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWH+GEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF Sbjct 2165 AWHSGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 2205 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 6 strain Charles] Sequence ID: Q66474.3 Length: 2191 Range 1: 1730 to 2191 Score:747 bits(1928), Expect:0.0, Method:Compositional matrix adjust., Identities:343/462(74%), Positives:402/462(87%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ GYP+IN PS+TKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1730 GEIEFIESSKDAGYPVINTPSRTKLEPSVFHQVFEGSKEPAVLRNGDPRLKANFEEAIFS 1789 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EA+DHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1790 KYIGNVNTHVDEYMLEAIDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1849 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1850 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1909 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY AFH+NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1910 LNDSVAMRQTFGNLYKAFHQNPGIVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1969 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1970 LSPVWFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2029 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2030 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2089 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2090 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2149 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE+EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2150 LAWHNGEQEYEEFIQKIRSVPVGRCLTLPAFSTLRRKWLDSF 2191 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 30 (strain Bastianni)] Sequence ID: Q9WN78.3 Length: 2194 Range 1: 1733 to 2194 Score:746 bits(1927), Expect:0.0, Method:Compositional matrix adjust., Identities:343/462(74%), Positives:402/462(87%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SKE G+P+IN PSKTKLEPS FH+VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1733 GEIEFIESSKEAGFPVINTPSKTKLEPSVFHHVFEGNKEPAVLRNGDPRLKANFEEAIFS 1792 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1793 KYIGNVNTHVDEYMMEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1852 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1853 VALGIKKRDILSKKTKDLAKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1912 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1913 LNDSVAMRQTFGNLYKTFHMNPGIVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1972 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1973 LSPVWFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2032 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYPH +DASLLA++GK YGL MTPADK Sbjct 2033 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPHPIDASLLAEAGKGYGLIMTPADK 2092 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2093 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2152 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE+EY +F++KIRSVP+GR L LP +STL R+WLDSF Sbjct 2153 LAWHNGEQEYEEFVSKIRSVPVGRCLTLPAFSTLRRKWLDSF 2194 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B3 (strain Woodruff)] Sequence ID: Q66282.3 Length: 2185 Range 1: 1724 to 2185 Score:744 bits(1920), Expect:0.0, Method:Compositional matrix adjust., Identities:345/462(75%), Positives:399/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SKE G+PIIN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1724 GEIEFIESSKEAGFPIINTPSKTKLEPSVFHQVFEGDKEPAVLRNGDPRLKVNFEEAIFS 1783 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1784 KYIGNVNTHVDEYMMEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1843 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1844 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1903 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPGV+TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1904 LNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1963 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1964 LSPVWFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2023 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2024 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2083 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2084 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2143 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +ST+ R+WLDSF Sbjct 2144 LAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTIRRKWLDSF 2185 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A9 (strain Griggs)] Sequence ID: P21404.4 Length: 2201 Range 1: 1740 to 2201 Score:743 bits(1918), Expect:0.0, Method:Compositional matrix adjust., Identities:343/462(74%), Positives:399/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+PIIN PSKTKLEPS FH VFEGVKEPAVL DPRLK +FEEAIFS Sbjct 1740 GEIEFIESSKDAGFPIINTPSKTKLEPSVFHQVFEGVKEPAVLRNGDPRLKANFEEAIFS 1799 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1800 KYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1859 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP++TYVKD+LRS KV +GKSRLIEASS Sbjct 1860 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMITYVKDQLRSAEKVAKGKSRLIEASS 1919 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV++ L AFDY+GYDAS Sbjct 1920 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVMLNGHLIAFDYSGYDAS 1979 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1980 LSPVWFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2039 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2040 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2099 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2100 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2159 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2160 LAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2201 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 5 (strain Noyce)] Sequence ID: Q9YLJ1.3 Length: 2196 Range 1: 1735 to 2196 Score:742 bits(1915), Expect:0.0, Method:Compositional matrix adjust., Identities:344/462(74%), Positives:399/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+PIIN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1735 GEIEFIESSKDAGFPIINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFS 1794 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1795 KYIGNVNTHVDEYMMEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1854 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1855 VALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1914 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1915 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1974 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LKM+LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1975 LSPVWFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2034 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2035 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2094 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2095 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2154 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2155 LAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2196 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 9 strain Barty] Sequence ID: Q66577.3 Length: 2203 Range 1: 1742 to 2203 Score:740 bits(1911), Expect:0.0, Method:Compositional matrix adjust., Identities:341/462(74%), Positives:399/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PSKTKLEPS FH VFEG KEPAVL DPRLK DFEEAIFS Sbjct 1742 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKADFEEAIFS 1801 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM+EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1802 KYIGNVNTHVDEYMQEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1861 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS K +GKSRLIEASS Sbjct 1862 VALGIKKRDILSKRTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKSPRGKSRLIEASS 1921 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPD+FWSKIPV+++ L AFDY+GYDAS Sbjct 1922 LNDSVAMRQTFGNLYKVFHLNPGIVTGSAVGCDPDVFWSKIPVMLDGHLIAFDYSGYDAS 1981 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1982 LSPVWFACLKLLLEKLGYSSKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2041 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2042 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2101 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2102 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2161 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2162 LAWHNGEHEYEEFIHKIRSVPVGRCLTLPAFSTLRRKWLDSF 2203 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 9 strain Hill] Sequence ID: Q66849.3 Length: 2193 Range 1: 1732 to 2193 Score:739 bits(1909), Expect:0.0, Method:Compositional matrix adjust., Identities:342/462(74%), Positives:398/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SKE G+P+IN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEA+FS Sbjct 1732 GEIEFIESSKEAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKANFEEALFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1792 KYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMRLEDAVYGTEGLEALDLTTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1852 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSA GCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1912 LNDSVAMRQTFGNLYKTFHLNPGIVTGSASGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1972 LSPVWFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2032 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2092 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2152 LAWHNGEREYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B6 (strain Schmitt)] Sequence ID: Q9QL88.4 Length: 2184 Range 1: 1723 to 2184 Score:739 bits(1908), Expect:0.0, Method:Compositional matrix adjust., Identities:341/462(74%), Positives:398/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+PIIN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1723 GEIEFIESSKDAGFPIINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKANFEEAIFS 1782 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDINTE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1783 KYIGNVNTHVDEYMLEAVDHYAGQLATLDINTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1842 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+++D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1843 VALGIKKRDILSKKSKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1902 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1903 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1962 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1963 LSPVWFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2022 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GK YGL MTPADK Sbjct 2023 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADK 2082 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2083 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2142 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ K+RSVP+GR L LP +STL R+WLDSF Sbjct 2143 LAWHNGEHEYEEFIRKVRSVPVGRCLTLPAFSTLRRKWLDSF 2184 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Swine vesicular disease virus (STRAIN UKG/27/72)] Sequence ID: P13900.3 Length: 2185 Range 1: 1724 to 2185 Score:738 bits(1906), Expect:0.0, Method:Compositional matrix adjust., Identities:341/462(74%), Positives:400/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PSKTKLEPS FH+VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1724 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHHVFEGNKEPAVLRNGDPRLKANFEEAIFS 1783 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1784 KYIGNVNTHVDEYMMEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1843 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1844 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSRLIEASS 1903 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPD+FWSKIPV+++ L AFDY+GYDAS Sbjct 1904 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDVFWSKIPVMLDGHLIAFDYSGYDAS 1963 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ ++ +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1964 LSPVWFTCLKLLLEKLGYTNKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2023 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2024 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2083 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2084 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2143 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSV +GR L LP +STL R+WLDSF Sbjct 2144 LAWHNGEHEYEEFIRKIRSVRVGRCLSLPAFSTLRRKWLDSF 2185 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Swine vesicular disease virus (STRAIN H/3 '76)] Sequence ID: P16604.3 Length: 2185 Range 1: 1724 to 2185 Score:737 bits(1902), Expect:0.0, Method:Compositional matrix adjust., Identities:340/462(74%), Positives:400/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PSKTKLEPS FH+VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1724 GEIEFVESSKDAGFPVINTPSKTKLEPSVFHHVFEGNKEPAVLRNGDPRLKANFEEAIFS 1783 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVD+YAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1784 KYIGNVNTHVDEYMMEAVDYYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1843 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1844 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSRLIEASS 1903 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPD+FWSKIPV+++ L AFDY+GYDAS Sbjct 1904 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDVFWSKIPVMLDGHLIAFDYSGYDAS 1963 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ ++ +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1964 LSPVWFTCLKLLLEKLGYTNKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2023 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GK YGL MTPADK Sbjct 2024 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADK 2083 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2084 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2143 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2144 LAWHNGEHEYEEFIRKIRSVPVGRCLSLPAFSTLRRKWLDSF 2185 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=P2; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B1 (strain Japan)] Sequence ID: P08291.3 Length: 2182 Range 1: 1721 to 2182 Score:735 bits(1897), Expect:0.0, Method:Compositional matrix adjust., Identities:340/462(74%), Positives:397/462(85%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SKE G+P+IN PSKTKLEPS FH VFEG KEPAVL DPRL+ +FEEAIFS Sbjct 1721 GEIEFIESSKEAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLRANFEEAIFS 1780 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1781 KYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMRLEDAVYGTEGLEALDLTTSAGYPY 1840 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1841 VALGIKKRDILSKKTRDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1900 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1901 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVMLDGHLVAFDYSGYDAS 1960 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1961 LSPVWFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2020 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++G+D GL MTPADK Sbjct 2021 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGRDCGLIMTPADK 2080 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2081 GDCFNEVTWANVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2140 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+G L LP +STL R+WLDSF Sbjct 2141 LAWHNGEHEYEEFIRKIRSVPVGACLTLPAFSTLRRKWLDSF 2182 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 70 (strain J670/71)] Sequence ID: P32537.4 Length: 2194 Range 1: 1750 to 2194 Score:734 bits(1896), Expect:0.0, Method:Compositional matrix adjust., Identities:344/445(77%), Positives:384/445(86%), Gaps:0/445(0%) Query 17 INAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKE 76 INAP+KTKLEPS FH VFEGVKEPAVL D RLK DFEEAIFSKYVGNK +DEYM+E Sbjct 1750 INAPAKTKLEPSVFHEVFEGVKEPAVLHSKDKRLKVDFEEAIFSKYVGNKTMLMDEYMEE 1809 Query 77 AVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 AVDHY G L LDI+TE + LE+AMYG DGLEALDL+TSAGYPY+ GKKKRDI N+QTR Sbjct 1810 AVDHYVGCLEPLDISTEPIKLEEAMYGMDGLEALDLTTSAGYPYLLQGKKKRDIFNRQTR 1869 Query 137 DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYA 196 DT EM K+LD YG++LP VT+VKDELRS+ KVE+GKSRLIEASSLNDSVAMR+AFGNLYA Sbjct 1870 DTTEMTKMLDKYGVDLPFVTFVKDELRSREKVEKGKSRLIEASSLNDSVAMRVAFGNLYA 1929 Query 197 AFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKI 256 FHKNPGV TGSAVGCDPDLFWSKIPV ++ K+FAFDYTGYDASLSP WF LK L K+ Sbjct 1930 TFHKNPGVATGSAVGCDPDLFWSKIPVXLDGKIFAFDYTGYDASLSPVWFACLKKTLVKL 1989 Query 257 GFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGI 316 G+ + ++DYL HS HLYK++ Y V GGMPSG SGTSIFN+MINN+IIRTLLLK YKGI Sbjct 1990 GYTHQTAFVDYLCHSVHLYKDRKYIVNGGMPSGSSGTSIFNTMINNIIIRTLLLKVYKGI 2049 Query 317 DLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKR 376 DLD KMIAYGDDVIASYPHE+D LLA++GK+YGL MTPADKS+ F TWENVTFLKR Sbjct 2050 DLDQFKMIAYGDDVIASYPHEIDPGLLAKAGKEYGLIMTPADKSSGFTETTWENVTFLKR 2109 Query 377 FFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKI 436 +FRADE+YPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEE YN+F KI Sbjct 2110 YFRADEQYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEETYNEFCRKI 2169 Query 437 RSVPIGRALLLPEYSTLYRRWLDSF 461 R+VP+GRAL LP YS+L R+WLDSF Sbjct 2170 RTVPVGRALALPVYSSLRRKWLDSF 2194 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 1 (strain Farouk / ATCC VR-1038)] Sequence ID: O91734.4 Length: 2184 Range 1: 1723 to 2184 Score:731 bits(1887), Expect:0.0, Method:Compositional matrix adjust., Identities:341/462(74%), Positives:401/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1723 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKVNFEEAIFS 1782 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM+EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1783 KYIGNVNTHVDEYMQEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1842 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1843 VALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1902 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPD+FWSKIPV+++ L AFDY+GYDAS Sbjct 1903 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDVFWSKIPVMLDGHLIAFDYSGYDAS 1962 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ ++ +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1963 LSPVWFACLKLLLEKLGYTNKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2022 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2023 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2082 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2083 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2142 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2143 LAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2184 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B2 (strain Ohio-1)] Sequence ID: Q9YLG5.3 Length: 2187 Range 1: 1726 to 2187 Score:731 bits(1886), Expect:0.0, Method:Compositional matrix adjust., Identities:342/462(74%), Positives:401/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+INAPS+TKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1726 GEIEFIESSKDAGFPVINAPSRTKLEPSVFHQVFEGNKEPAVLRNGDPRLKANFEEAIFS 1785 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1786 KYIGNVNTRVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1845 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1846 VALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1905 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY AFH NPG++TGSAVGCDPD+FWSKIPV+++ L AFDY+GYDAS Sbjct 1906 LNDSVAMRQTFGNLYKAFHLNPGIVTGSAVGCDPDMFWSKIPVMLDGHLIAFDYSGYDAS 1965 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1966 LSPVWFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2025 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2026 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2085 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2086 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2145 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2146 LAWHNGEHEYEEFIRKIRSVPVGRCLSLPAFSTLRRKWLDSF 2187 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B4 (strain JVB / Benschoten / New York/51)] Sequence ID: P08292.4 Length: 2183 Range 1: 1722 to 2183 Score:730 bits(1884), Expect:0.0, Method:Compositional matrix adjust., Identities:341/462(74%), Positives:400/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PS+TKLEPS FH+VFEG KEPAVL DPRLK +FEEAIF Sbjct 1722 GEIEFIESSKDAGFPVINTPSRTKLEPSVFHHVFEGNKEPAVLRNGDPRLKVNFEEAIFF 1781 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDINTE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1782 KYIGNVNTHVDEYMLEAVDHYAGQLATLDINTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1841 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1842 VALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1901 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY AFH NPG++TGSAVGCDPD+FWSKIPV+++ L AFDY+GYDAS Sbjct 1902 LNDSVAMRQTFGNLYKAFHLNPGIVTGSAVGCDPDVFWSKIPVMLDGHLIAFDYSGYDAS 1961 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1962 LSPVWFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2021 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2022 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2081 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2082 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2141 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2142 LAWHNGEHEYEEFIQKIRSVPVGRCLTLPAFSTLRRKWLDSF 2183 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B5 (strain Peterborough / 1954/UK/85)] Sequence ID: Q03053.3 Length: 2185 Range 1: 1724 to 2185 Score:730 bits(1884), Expect:0.0, Method:Compositional matrix adjust., Identities:344/462(74%), Positives:398/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SKE G P+IN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1724 GEIEFIESSKEAGLPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKANFEEAIFS 1783 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1784 KYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1843 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1844 VALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1903 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPVL++ L AFDY+GYDAS Sbjct 1904 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVLLDGHLIAFDYSGYDAS 1963 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1964 LSPVWFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2023 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GKDYGL MTPADK Sbjct 2024 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKDYGLIMTPADK 2083 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2084 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2143 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2144 LAWHNGEHEYEEFIKKIRSVPVGRCLTLPAFSTLRRKWLDSF 2185 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 11 (strain Gregory)] Sequence ID: P29813.4 Length: 2195 Range 1: 1734 to 2195 Score:729 bits(1881), Expect:0.0, Method:Compositional matrix adjust., Identities:339/462(73%), Positives:396/462(85%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+PIIN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1734 GEIEFIESSKDAGFPIINTPSKTKLEPSVFHQVFEGDKEPAVLRNGDPRLKANFEEAIFS 1793 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1794 KYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMRLEDAVYGTEGLEALDLTTSAGYPY 1853 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+++TRD ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1854 VALGIKKRDILSRRTRDLTKLKECMDKYGLNLPMVTYVKDELRSADKVAKGKSRLIEASS 1913 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1914 LNDSVAMRQTFGNLYRTFHLNPGIVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1973 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y +GGMPSG SGTS+FNSM Sbjct 1974 LSPVWFACLKLLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFERGGMPSGYSGTSMFNSM 2033 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GK YGL MTPADK Sbjct 2034 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAETGKGYGLIMTPADK 2093 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2094 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2153 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2154 LAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2195 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Echovirus 12 (strain Travis)] Sequence ID: Q66575.4 Length: 2193 Range 1: 1732 to 2193 Score:729 bits(1881), Expect:0.0, Method:Compositional matrix adjust., Identities:342/462(74%), Positives:399/462(86%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1732 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRNGDPRLKVNFEEAIFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1792 KYIGNINTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1852 VAIGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSSEKVAKGKSRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1912 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ R +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1972 LSPVWFACLKLLLEKLGYTHRETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GK YGL MTPADK Sbjct 2032 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW NVTFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2092 GECFNEVTWTNVTFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE+EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2152 LAWHNGEQEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B3 (strain Nancy)] Sequence ID: P03313.4 Length: 2185 Range 1: 1724 to 2185 Score:726 bits(1873), Expect:0.0, Method:Compositional matrix adjust., Identities:342/462(74%), Positives:397/462(85%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SK+ G+P+IN PSKTKLEPS FH VFEG KEPAVL DPRLK +FEEAIFS Sbjct 1724 GEIEFIESSKDAGFPVINTPSKTKLEPSVFHQVFEGNKEPAVLRSGDPRLKANFEEAIFS 1783 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1784 KYIGNVNTHVDEYMLEAVDHYAGQLATLDISTEPMKLEDAVYGTEGLEALDLTTSAGYPY 1843 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VA+G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1844 VALGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSIEKVAKGKSRLIEASS 1903 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPGV+TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1904 LNDSVAMRQTFGNLYKTFHLNPGVVTGSAVGCDPDLFWSKIPVMLDGHLIAFDYSGYDAS 1963 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LKM+LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1964 LSPVWFACLKMLLEKLGYTHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2023 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+LK YKGIDLD +MIAYGDDVIASYP +DASLLA++GK YGL MTPADK Sbjct 2024 INNIIIRTLMLKVYKGIDLDQFRMIAYGDDVIASYPWPIDASLLAEAGKGYGLIMTPADK 2083 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F VTW N TFLKR+FRADE+YPFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLCL Sbjct 2084 GECFNEVTWTNATFLKRYFRADEQYPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCL 2143 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE EY +F+ KIRSVP+GR L LP +STL R+WLDSF Sbjct 2144 LAWHNGEHEYEEFIRKIRSVPVGRCLTLPAFSTLRRKWLDSF 2185 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [enterovirus D68] Sequence ID: Q68T42.1 Length: 2188 Range 1: 1744 to 2188 Score:718 bits(1853), Expect:0.0, Method:Compositional matrix adjust., Identities:331/445(74%), Positives:380/445(85%), Gaps:0/445(0%) Query 17 INAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKE 76 INAP+KTKL+PS FH VFEG KEPAVL DPRLKTDFEEAIFSKY GNKI +DEYM+E Sbjct 1744 INAPAKTKLQPSVFHQVFEGSKEPAVLNSKDPRLKTDFEEAIFSKYTGNKIMLMDEYMEE 1803 Query 77 AVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 AVDHY G L LDI+ + + LE+AMYG +GLEALDL+TSAG+PY+ GKKKRDI N+QTR Sbjct 1804 AVDHYVGCLEPLDISVDPIPLENAMYGMEGLEALDLTTSAGFPYLLQGKKKRDIFNRQTR 1863 Query 137 DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYA 196 DT EM K+L+ YG++LP VT+VKDELRS+ KVE+GKSRLIEASSLNDSVAMR+AFGNLYA Sbjct 1864 DTSEMTKMLEKYGVDLPFVTFVKDELRSREKVEKGKSRLIEASSLNDSVAMRVAFGNLYA 1923 Query 197 AFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKI 256 FH NPG TGSAVGCDPD+FWSKIP+L++ ++FAFDYTGYDASLSP WF LK VL K+ Sbjct 1924 TFHNNPGTATGSAVGCDPDIFWSKIPILLDGEIFAFDYTGYDASLSPVWFACLKKVLIKL 1983 Query 257 GFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGI 316 G+ + +IDYL HS HLYK++ Y + GGMPSG SGTSIFN+MINN+IIRTLL+K YKGI Sbjct 1984 GYTHQTSFIDYLCHSVHLYKDRKYVINGGMPSGSSGTSIFNTMINNIIIRTLLIKVYKGI 2043 Query 317 DLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKR 376 DLD KMIAYGDDVIASYPH++D LLA++GK YGL MTPADK +F WENVTFLKR Sbjct 2044 DLDQFKMIAYGDDVIASYPHKIDPGLLAEAGKHYGLVMTPADKGTSFIDTNWENVTFLKR 2103 Query 377 FFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKI 436 +FRAD++YPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLC LAWHNGEE YN+F KI Sbjct 2104 YFRADDQYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCYLAWHNGEEAYNEFCRKI 2163 Query 437 RSVPIGRALLLPEYSTLYRRWLDSF 461 RSVP+GRAL LP YS+L R+WLDSF Sbjct 2164 RSVPVGRALTLPAYSSLRRKWLDSF 2188 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus B4 (strain E2)] Sequence ID: Q86887.3 Length: 2183 Range 1: 1722 to 2183 Score:711 bits(1834), Expect:0.0, Method:Compositional matrix adjust., Identities:332/462(72%), Positives:394/462(85%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI+++ SKE G+P+IN P+KTKLEPS FH++FEG KEPAVL D RLK +FEEAIFS Sbjct 1722 GEIEFIESSKEAGFPVINTPNKTKLEPSVFHHIFEGNKEPAVLRNGDTRLKVNFEEAIFS 1781 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN T VDEYM EAVDHYAGQL +LDI+TE M LEDA+YGT+GLEALDL+TSAGYPY Sbjct 1782 KYIGNVNTHVDEYMMEAVDHYAGQLATLDISTEPMRLEDAVYGTEGLEALDLTTSAGYPY 1841 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V +G KKRDIL+K+T+D ++++ +D YG+NLP+VTYVKDELRS KV +GKSRLIEASS Sbjct 1842 VTLGIKKRDILSKKTKDLTKLKECMDKYGLNLPMVTYVKDELRSAEKVAKGKSRLIEASS 1901 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG++TGSAVGCDPDLFWSKIPV+++ L AFDY+GYDAS Sbjct 1902 LNDSVAMRQTFGNLYKTFHLNPGIVTGSAVGCDPDLFWSKIPVMLDGHLRAFDYSGYDAS 1961 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF LK++LEK+G+ + +YIDYL +SHHLY++K Y V+GGMPSGCSGTSIFNSM Sbjct 1962 LSPVWFACLKLLLEKLGYSHKETNYIDYLCNSHHLYRDKHYFVRGGMPSGCSGTSIFNSM 2021 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+ K YKGIDLD +MIAYGDDVIASYP +DASLLA++GK YGL MTPADK Sbjct 2022 INNIIIRTLMFKVYKGIDLDQFRMIAYGDDVIASYPLPIDASLLAEAGKGYGLIMTPADK 2081 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 F +TW NVTFLKR+FRADE+YPFL+HPVMP+K+IHESIRWTKDP+NTQ HVRSLCL Sbjct 2082 GECFNELTWTNVTFLKRYFRADEQYPFLVHPVMPIKDIHESIRWTKDPKNTQYHVRSLCL 2141 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNGE+EY + KIRSVP+GR L LP +STL R+WLD+F Sbjct 2142 LAWHNGEQEYEELYPKIRSVPVGRCLTLPAFSTLRRKWLDAF 2183 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Porcine enterovirus 9] Sequence ID: O41174.3 Length: 2168 Range 1: 1708 to 2168 Score:699 bits(1805), Expect:0.0, Method:Compositional matrix adjust., Identities:327/461(71%), Positives:387/461(83%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G+I W+ PSK+ G+P+INAPSKTKLEPS F VFEGVKEPA L DPRL+ + EEA+FS Sbjct 1708 GKIDWVEPSKKHGFPVINAPSKTKLEPSVFFDVFEGVKEPAALHPKDPRLEVNLEEALFS 1767 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN E+ E MKEAVDHYA QL++LDI TE + +E+A+YGT+GLEALDL+TSAGYPY Sbjct 1768 KYTGNVDIEMPEEMKEAVDHYANQLLALDIPTEPLSMEEAIYGTEGLEALDLTTSAGYPY 1827 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V MG KKRDILNK+TRD K+MQ+ +D YG+NLP+VTY+KDELRSK KV++GKSRLIEASS Sbjct 1828 VTMGIKKRDILNKETRDVKKMQECIDKYGLNLPMVTYIKDELRSKEKVKKGKSRLIEASS 1887 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY AFH+NPG +TG AVGCDPD FWSKIPV+M+ +LF FDYT YDAS Sbjct 1888 LNDSVAMRCYFGNLYKAFHQNPGTLTGCAVGCDPDTFWSKIPVMMDGELFGFDYTAYDAS 1947 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSP F+AL+MVLEKIGFG+ +ID L +SHHL+++K Y VKGGMPSGCSGTSIFNSMI Sbjct 1948 LSPLMFQALQMVLEKIGFGEGKHFIDNLCYSHHLFRDKYYFVKGGMPSGCSGTSIFNSMI 2007 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NN+IIRT++L+TYKGI+LD LK+IAYGDDVIASYP+ +D + LA++G GL MTP DKS Sbjct 2008 NNIIIRTVVLQTYKGIELDQLKIIAYGDDVIASYPYRIDPAELAKAGAKLGLHMTPPDKS 2067 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 T+ + W NVTFLKR F DEKYPFL+HPVMPMKEI+ESIRWT+D RNTQDHVRSLCLL Sbjct 2068 ETYVDLDWTNVTFLKRNFVPDEKYPFLVHPVMPMKEIYESIRWTRDARNTQDHVRSLCLL 2127 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNG +EY +F KIRSVP+GRAL LP YS+L R W + F Sbjct 2128 AWHNGRKEYEEFCRKIRSVPVGRALHLPSYSSLLREWYEKF 2168 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Coxsackievirus A16 (strain Tainan/5079/98)] Sequence ID: Q9QF31.3 Length: 2193 Range 1: 1732 to 2193 Score:685 bits(1767), Expect:0.0, Method:Compositional matrix adjust., Identities:316/462(68%), Positives:379/462(82%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWM+P+KE G IN P++TKLEPS FH VFEG KEPAVLT DPRL+ DFE+A+FS Sbjct 1732 GEIQWMKPNKETGRLNINGPTRTKLEPSVFHDVFEGNKEPAVLTSKDPRLEVDFEQALFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGN + E DEY+ +A HYA QL LDIN +M +E+A YGT+ LEA+DL TSAGYPY Sbjct 1792 KYVGNTLHEPDEYVTQAALHYANQLKQLDININKMSMEEACYGTEYLEAIDLHTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 A+G KKRDIL+ TRDT +M+ +D YG++LP TYVKDELRS K+++GKSRLIEASS Sbjct 1852 SALGVKKRDILDPITRDTTKMKFYMDKYGLDLPYSTYVKDELRSLDKIKKGKSRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSV +RM FG+LY FH NPG +TGSAVGC+PD+FWSK+P+L+ LFAFDY+GYDAS Sbjct 1912 LNDSVYLRMTFGHLYETFHANPGTVTGSAVGCNPDVFWSKLPILLPGSLFAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF AL++VL +IG+ + V I+ +NH+HH+Y+NKTYCV GGMPSGCSGTSIFNSM Sbjct 1972 LSPVWFRALEVVLREIGYSEEAVSLIEGINHTHHVYRNKTYCVLGGMPSGCSGTSIFNSM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTLL+KT+KGIDLD L M+AYGDDV+ASYP +D S LA++GK+YGLTMTPADK Sbjct 2032 INNIIIRTLLIKTFKGIDLDELNMVAYGDDVLASYPFPIDCSELAKTGKEYGLTMTPADK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F VTWEN TFLKR F D ++PFLIHP MPM+EIHESIRWTKD RNTQDHVRSLCL Sbjct 2092 SPCFNEVTWENATFLKRGFLPDHQFPFLIHPTMPMREIHESIRWTKDARNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNG+EEY KF++ IRSVPIG+AL +P + L R WL+ F Sbjct 2152 LAWHNGKEEYEKFVSTIRSVPIGKALAIPNFENLRRNWLELF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human coxsackievirus A16 (strain G-10)] Sequence ID: Q65900.3 Length: 2193 Range 1: 1732 to 2193 Score:684 bits(1765), Expect:0.0, Method:Compositional matrix adjust., Identities:316/462(68%), Positives:377/462(81%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQW++P+KE G IN P++TKLEPS FH VFEG KEPAVL DPRL+ DFE+A+FS Sbjct 1732 GEIQWVKPNKETGRLNINGPTRTKLEPSVFHDVFEGNKEPAVLHSRDPRLEVDFEQALFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGN + E DEY+KEA HYA QL LDINT QM +E+A YGT+ LEA+DL TSAGYPY Sbjct 1792 KYVGNTLHEPDEYIKEAALHYANQLKQLDINTSQMSMEEACYGTENLEAIDLHTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 A+G KKRDIL+ TRD +M+ +D YG++LP TYVKDELRS K+++GKSRLIEASS Sbjct 1852 SALGIKKRDILDPTTRDVSKMKFYMDKYGLDLPYSTYVKDELRSIDKIKKGKSRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSV +RMAFG+LY FH NPG ITGSAVGC+PD FWSK+P+L+ LFAFDY+GYDAS Sbjct 1912 LNDSVYLRMAFGHLYETFHANPGTITGSAVGCNPDTFWSKLPILLPGSLFAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF AL++VL ++G+ + V I+ +NH+HH+Y+NKTYCV GGMPSGCSGTSIFNSM Sbjct 1972 LSPVWFRALELVLREVGYSEEAVSLIEGINHTHHVYRNKTYCVLGGMPSGCSGTSIFNSM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTLL+KT+KGIDLD L M+AYGDDV+ASYP +D LA++GK+YGLTMTPADK Sbjct 2032 INNIIIRTLLIKTFKGIDLDELNMVAYGDDVLASYPFPIDCLELARTGKEYGLTMTPADK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F V W N TFLKR F DE++PFLIHP MPMKEIHESIRWTKD RNTQDHVRSLCL Sbjct 2092 SPCFNEVNWGNATFLKRGFLPDEQFPFLIHPTMPMKEIHESIRWTKDARNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNG++EY KF++ IRSVP+G+AL +P Y L R WL+ F Sbjct 2152 LAWHNGKQEYEKFVSTIRSVPVGKALAIPNYENLRRNWLELF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Enterovirus A71] Sequence ID: B9VUU3.1 Length: 2193 Range 1: 1732 to 2193 Score:682 bits(1759), Expect:0.0, Method:Compositional matrix adjust., Identities:314/462(68%), Positives:377/462(81%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQW++P+KE G IN P++TKLEPS FH VFEG KEPAVL DPRL+ DFE+A+FS Sbjct 1732 GEIQWVKPNKETGRLNINGPTRTKLEPSVFHDVFEGSKEPAVLHSKDPRLEVDFEQALFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGN + DEY++EA HYA QL LDI+T QM +E+A YGTD LEA+DL TSAGYPY Sbjct 1792 KYVGNTLHVPDEYIREAALHYANQLKQLDIDTTQMSMEEACYGTDNLEAIDLHTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 A+G KKRDIL+ TRD +M+ +D YG++LP TYVKDELRS K+++GKSRLIEASS Sbjct 1852 SALGIKKRDILDPTTRDVSKMKFYMDKYGLDLPYSTYVKDELRSIDKIKKGKSRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSV +RMAFG+LY FH NPG +TGSAVGC+PD+FWSK+P+L+ LFAFDY+GYDAS Sbjct 1912 LNDSVYLRMAFGHLYETFHANPGTVTGSAVGCNPDVFWSKLPILLPGSLFAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF AL++VL +IG+ + V I+ +NH+HH+Y+NKTYCV GGMPSGCSGTSIFN+M Sbjct 1972 LSPVWFRALELVLREIGYSEEAVSLIEGINHTHHVYRNKTYCVLGGMPSGCSGTSIFNTM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIR LL+KT+KGIDLD L M+AYGDDV+ASYP +D LA++GK+YGLTMTPADK Sbjct 2032 INNIIIRALLIKTFKGIDLDELNMVAYGDDVLASYPFPIDCLELAKTGKEYGLTMTPADK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F V WEN TFLKR F DE++PFLIHP MPMKEIHESIRWTKD RNTQDHVRSLCL Sbjct 2092 SPCFNEVNWENATFLKRGFLPDEQFPFLIHPTMPMKEIHESIRWTKDARNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNG++EY KF++ IRSVPIG+AL +P Y L R WL+ F Sbjct 2152 LAWHNGKQEYEKFVSSIRSVPIGKALAIPNYENLRRNWLELF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 71 (strain 7423/MS/87)] Sequence ID: Q66479.3 Length: 2193 Range 1: 1732 to 2193 Score:677 bits(1746), Expect:0.0, Method:Compositional matrix adjust., Identities:311/462(67%), Positives:376/462(81%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQW++ +KE G IN P++TKLEPS FH VFE KEPAVLT DPRL+ DFE+A+FS Sbjct 1732 GEIQWVKSNKETGRLNINGPTRTKLEPSVFHDVFEANKEPAVLTSKDPRLEVDFEQALFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGN + E DEY+ +A HYA QL LDINT++M +E+A YGTD LEA+DL TSAGYPY Sbjct 1792 KYVGNVLHEPDEYVHQAALHYANQLKQLDINTKKMSMEEACYGTDNLEAIDLHTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 A+G KKRDIL+ TRD +M+ +D YG++LP TYVKDELRS K+++GKSRLIEASS Sbjct 1852 SALGIKKRDILDPATRDVSKMKSYMDKYGLDLPYSTYVKDELRSLDKIKKGKSRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSV +RM FG+LY FH NPG +TGSAVGC+PD+FWSK+P+L+ LFAFDY+GYDAS Sbjct 1912 LNDSVYLRMTFGHLYEVFHANPGTVTGSAVGCNPDVFWSKLPILLPGSLFAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF AL++VL +IG+ + V I+ +NH+HH+Y+NKTYCV GGMPSGCSGTSIFNSM Sbjct 1972 LSPVWFRALEVVLREIGYSEEAVSLIEGINHTHHIYRNKTYCVLGGMPSGCSGTSIFNSM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTLL+KT+KGIDLD L M+AYGDDV+ASYP +D LA++GK+YGLTMTPA K Sbjct 2032 INNIIIRTLLIKTFKGIDLDELNMVAYGDDVLASYPFPIDCLELAKTGKEYGLTMTPAGK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F VTWEN TFLKR F D ++PFLIHP MPMKEIHESIRWTKD RNTQDHVRSLCL Sbjct 2092 SPCFNEVTWENATFLKRGFLPDHQFPFLIHPTMPMKEIHESIRWTKDARNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNG++EY KF++ IRSVP+G+AL +P + L R WL+ F Sbjct 2152 LAWHNGKDEYEKFVSTIRSVPVGKALAIPNFENLRRNWLELF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human enterovirus 71 (strain BRCR)] Sequence ID: Q66478.3 Length: 2193 Range 1: 1732 to 2193 Score:671 bits(1732), Expect:0.0, Method:Compositional matrix adjust., Identities:311/462(67%), Positives:372/462(80%), Gaps:1/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEIQWM+P++E G IN P++TKLEPS FH VFEG KEPAVLT DPRL+ DFE+A+FS Sbjct 1732 GEIQWMKPNRETGRLNINGPTRTKLEPSVFHDVFEGNKEPAVLTSKDPRLEVDFEQALFS 1791 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KYVGN + E DEY+ +A HYA QL LDINT +M +E+A YGT+ LEA+DL TSAGYPY Sbjct 1792 KYVGNTLHEPDEYVTQAALHYANQLKQLDINTSKMSMEEACYGTEYLEAIDLHTSAGYPY 1851 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 A+G KKRDIL+ TRDT M+ +D YG++LP TYVKDEL S K+ +G+SRLIEASS Sbjct 1852 SALGIKKRDILDPVTRDTSRMKLYMDKYGLDLPNSTYVKDELSSLDKIRKGESRLIEASS 1911 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LND V R+ FG+LY FH NPG +TGSAVGC+PD+FWSK+P+L+ LFAFDY+GYDAS Sbjct 1912 LNDPVYPRLTFGHLYEVFHANPGTVTGSAVGCNPDVFWSKLPILLPGSLFAFDYSGYDAS 1971 Query 241 LSPAWFEALKMVLEKIGFGDR-VDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 LSP WF AL++VL +IG+ + V I+ +NH+HH+Y+NKTYCV GGMPSGCSGTSIFNSM Sbjct 1972 LSPVWFRALELVLREIGYSEEAVSLIEGINHTHHVYRNKTYCVLGGMPSGCSGTSIFNSM 2031 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTLL+KT+KGIDLD LKM+AYGDDV+ASYP +D ++GK+YGLTMTPADK Sbjct 2032 INNIIIRTLLIKTFKGIDLDELKMVAYGDDVLASYPFPIDCLEWGKTGKEYGLTMTPADK 2091 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F VTWEN TFLKR F D ++PFLIHP MPM+EIHESIRWTKD RNTQDHVRSLCL Sbjct 2092 SPCFNEVTWENATFLKRGFLPDHQFPFLIHPTMPMREIHESIRWTKDARNTQDHVRSLCL 2151 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LAWHNG+EEY KF++ IRSVPIGRAL +P L R WL+ F Sbjct 2152 LAWHNGKEEYEKFVSTIRSVPIGRALAIPNLENLRRNWLELF 2193 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Bovine enterovirus strain VG-5-27] Sequence ID: P12915.3 Length: 2175 Range 1: 1715 to 2175 Score:669 bits(1726), Expect:0.0, Method:Compositional matrix adjust., Identities:315/461(68%), Positives:375/461(81%), Gaps:0/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G+I+++ SK+ GYP+INAP++TKLEPS F VF GVKEPAVL K D RL+T+FEEA+FS Sbjct 1715 GQIEYIEKSKDAGYPVINAPTQTKLEPSVFFDVFPGVKEPAVLHKKDKRLETNFEEALFS 1774 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY+GN ++ E + A+DHY+ QL L+I+ + +EDA+YGT+GLEALDL TSA YPY Sbjct 1775 KYIGNVQRDMPEELLIAIDHYSEQLKMLNIDPRPISMEDAIYGTEGLEALDLGTSASYPY 1834 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 VAMG KKRDILNK+TRD +MQ+ +D YG+NLP+VTYVKDELR+ K+ +GKSRLIEASS Sbjct 1835 VAMGIKKRDILNKETRDVTKMQECIDKYGLNLPMVTYVKDELRAPDKIRKGKSRLIEASS 1894 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSVAMR FGNLY FH NPG I+G AVGCDP+ FWSKIPV+M+ +LF FDYT YDAS Sbjct 1895 LNDSVAMRCYFGNLYKVFHTNPGTISGCAVGCDPETFWSKIPVMMDGELFGFDYTAYDAS 1954 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSP WF AL VL +IGF + +ID L SHHLY +K Y V GGMPSGCSGTSIFNSMI Sbjct 1955 LSPMWFHALAEVLRRIGFVECKHFIDQLCCSHHLYMDKHYYVVGGMPSGCSGTSIFNSMI 2014 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NNLIIRTL+L YK IDLD LK+IAYGDDV+ASYP+E+DASLLA++GK +GL MTP DKS Sbjct 2015 NNLIIRTLVLTVYKNIDLDDLKIIAYGDDVLASYPYEIDASLLAEAGKSFGLIMTPPDKS 2074 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 A F +TW+NVTFLKR F D +YPFL+HPVM M IHESIRWTKDPR+T+DHVRSLCLL Sbjct 2075 AEFVKLTWDNVTFLKRKFVRDARYPFLVHPVMDMSNIHESIRWTKDPRHTEDHVRSLCLL 2134 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWH GEEEYN+F+ KIRSVP+GRAL LP + L R+W DSF Sbjct 2135 AWHCGEEEYNEFVTKIRSVPVGRALHLPSFKALERKWYDSF 2175 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus B14] Sequence ID: P03303.3 Length: 2179 Range 1: 1720 to 2179 Score:642 bits(1656), Expect:0.0, Method:Compositional matrix adjust., Identities:297/461(64%), Positives:372/461(80%), Gaps:1/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G++ +E +N P+K+KL PS F+ VF G KEPAVL+ NDPRL+ E++FS Sbjct 1720 GQVIARHKVREFNINPVNTPTKSKLHPSVFYDVFPGDKEPAVLSDNDPRLEVKLTESLFS 1779 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN TE E M AVDHYAGQL+SLDI T ++ L++A+YG DGLE +D++TSAG+PY Sbjct 1780 KYKGNVNTEPTENMLVAVDHYAGQLLSLDIPTSELTLKEALYGVDGLEPIDITTSAGFPY 1839 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V++G KKRDILNK+T+DT++M+ LD YGI+LPLVTY+KDELRS KV GKSRLIEASS Sbjct 1840 VSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGKSRLIEASS 1899 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 LNDSV MRM GNLY AFH+NPGV+TGSAVGCDPD+FWS IP LM+ L AFDY+ +DAS Sbjct 1900 LNDSVNMRMKLGNLYKAFHQNPGVLTGSAVGCDPDVFWSVIPCLMDGHLMAFDYSNFDAS 1959 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 LSP WF L+ VL K+GF I + ++HH+++++ Y V+GGMPSGCSGTSIFNSMI Sbjct 1960 LSPVWFVCLEKVLTKLGFAGS-SLIQSICNTHHIFRDEIYVVEGGMPSGCSGTSIFNSMI 2018 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NN+IIRTL+L YKGIDLD LK++AYGDD+I SYP+E+D +LA GK+YGLT+TP DKS Sbjct 2019 NNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSYPYELDPQVLATLGKNYGLTITPPDKS 2078 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 TF +TWEN+TFLKR+F+ D+++PFL+HPVMPMK+IHESIRWTKDP+NTQDHVRSLC+L Sbjct 2079 ETFTKMTWENLTFLKRYFKPDQQFPFLVHPVMPMKDIHESIRWTKDPKNTQDHVRSLCML 2138 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWH+GE+EYN+F+ KIR+ IG+ L+LPEYS L RRWLD F Sbjct 2139 AWHSGEKEYNEFIQKIRTTDIGKCLILPEYSVLRRRWLDLF 2179 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus B3] Sequence ID: Q82081.4 Length: 2178 Range 1: 1728 to 2178 Score:637 bits(1642), Expect:0.0, Method:Compositional matrix adjust., Identities:294/452(65%), Positives:368/452(81%), Gaps:1/452(0%) Query 10 KEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITE 69 +++G IN P+KTKL PS F+ VF G K+PAVL NDPRL+ E++FSKY GN E Sbjct 1728 RDIGLNPINTPTKTKLHPSVFYNVFPGSKQPAVLNDNDPRLEVKLAESLFSKYKGNVQME 1787 Query 70 VDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRD 129 E M AVDHYAGQLMSLDI+T+++ L++A+YG DGLE +D++TSAGYPYV++G KKRD Sbjct 1788 PTENMLIAVDHYAGQLMSLDISTKELTLKEALYGVDGLEPIDVTTSAGYPYVSLGIKKRD 1847 Query 130 ILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRM 189 ILNK+T+D ++M+ LD YGI+LPLVTY+KDELRS KV GKSRLIEASSLNDSV MRM Sbjct 1848 ILNKETQDVEKMKFYLDKYGIDLPLVTYIKDELRSVDKVRLGKSRLIEASSLNDSVNMRM 1907 Query 190 AFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEAL 249 GNLY AFH+NPG+IT SAVGCDPD+FWS IP LM+ L AFDY+ +DASLSP WFE L Sbjct 1908 KLGNLYKAFHQNPGIITESAVGCDPDVFWSVIPCLMDGHLMAFDYSNFDASLSPVWFECL 1967 Query 250 KMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLL 309 + VL K+GF + I + ++HH+++++ Y V+GGMPSGCSGTSIFNSMINN+IIRTL+ Sbjct 1968 EKVLNKLGF-KQPSLIQSICNTHHIFRDEIYRVEGGMPSGCSGTSIFNSMINNIIIRTLI 2026 Query 310 LKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWE 369 L YKGIDLD L+++AYGDD+I SYP E+D+++LA GK+YGLT+TP DKS F +TWE Sbjct 2027 LDAYKGIDLDSLRILAYGDDLIVSYPFELDSNILAAIGKNYGLTITPPDKSDAFTKITWE 2086 Query 370 NVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEY 429 N+TFLKR+FR D ++PFLIHPVMPM++I+ESIRWT+DPRNTQDHVRSLC+LAWH+GE++Y Sbjct 2087 NITFLKRYFRPDPQFPFLIHPVMPMQDIYESIRWTRDPRNTQDHVRSLCMLAWHSGEKDY 2146 Query 430 NKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 N F+ KIR+ IG+ L LPEYS L RRWLD F Sbjct 2147 NDFITKIRTTDIGKCLNLPEYSVLRRRWLDLF 2178 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus C15] Sequence ID: E5D8F2.1 Length: 2153 Range 1: 1694 to 2152 Score:571 bits(1471), Expect:0.0, Method:Compositional matrix adjust., Identities:266/461(58%), Positives:344/461(74%), Gaps:2/461(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 GEI +E G P IN P+KTKL+PS F+ VF GVKEPA L+ DPRL+ D ++ S Sbjct 1694 GEITAKHDVREKGLPQINTPNKTKLQPSVFYDVFPGVKEPAALSNGDPRLEVDLSTSVLS 1753 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN E ++ ++ AVDHY+ QL LDIN + + +E A+YG + LE LDL+TSAG+PY Sbjct 1754 KYKGNTQVEWNDNIQIAVDHYSAQLYMLDINPQPLTMEQAVYGIEHLEPLDLTTSAGFPY 1813 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V MG KK+DI+NK T+D ++Q+++D YGI+LP VTY+KDELR+ K+++GK+R IEA+S Sbjct 1814 VTMGIKKKDIVNKVTKDVTKLQEMIDKYGIDLPYVTYLKDELRAPEKIKKGKTRAIEAAS 1873 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 +ND+ RM FGNL++ FH NPGV+TGSAVGC+PD+FWS++ M+ +L AFDYT YD S Sbjct 1874 INDTTHFRMVFGNLFSVFHANPGVLTGSAVGCNPDVFWSQMYACMDGELLAFDYTNYDGS 1933 Query 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 L P WF+AL VL+ +GF + ++ L ++ H++KN Y V+GGMPSG GTSIFN+MI Sbjct 1934 LHPIWFKALGKVLDNLGFPGHL--VNRLCNTTHIFKNLIYTVEGGMPSGICGTSIFNTMI 1991 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NN+IIR L+L+TYK IDLD LK+IAYGDDV+ SYP E+D +A YGLT+TP DK Sbjct 1992 NNIIIRVLVLETYKNIDLDKLKIIAYGDDVVVSYPFELDPMEIANKAVRYGLTITPPDKG 2051 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 +TF + W NVTFLKR F+ D KY FLIHPV M++I+ESIRWTKDP+NTQDHV SLCLL Sbjct 2052 STFHKIDWTNVTFLKRHFKPDTKYKFLIHPVYKMEDIYESIRWTKDPKNTQDHVHSLCLL 2111 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 AWHNGEE Y KF KIRS +G+ L P YS LYR+W+D F Sbjct 2112 AWHNGEEVYEKFREKIRSTSVGKVLYTPPYSLLYRQWIDQF 2152 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human rhinovirus 1A] Sequence ID: P23008.3 Length: 2157 Range 1: 1698 to 2157 Score:567 bits(1461), Expect:0.0, Method:Compositional matrix adjust., Identities:265/462(57%), Positives:350/462(75%), Gaps:3/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G+I+ + + E G P I+ PSKTKL+PS F+ VF G KEPAVLT NDPRL+ +F+EA+FS Sbjct 1698 GQIKVNKHATECGLPTIHTPSKTKLQPSVFYDVFPGSKEPAVLTDNDPRLEVNFKEALFS 1757 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN ++E+M+ A+ HY+ QLM+LDI++ + LED+++G +GLEALDL+TSAG+PY Sbjct 1758 KYKGNVECNLNEHMEIAIAHYSAQLMTLDIDSRPIALEDSVFGIEGLEALDLNTSAGFPY 1817 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V MG KKRD++N +T+D +++ LD YG++LP++T++KDELR K K+ GK+R+IEASS Sbjct 1818 VTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISTGKTRVIEASS 1877 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME-EKLFAFDYTGYDA 239 +ND++ R FGNL++ FH NPGV+TGSAVGCDP+ FWSKIPV+++ + + AFDYT YD Sbjct 1878 INDTILFRTTFGNLFSKFHLNPGVVTGSAVGCDPETFWSKIPVMLDGDCIMAFDYTNYDG 1937 Query 240 SLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 S+ P WF+ALK VLE + F + + ID L +S HL+K+ Y V GG+PSGCSGTSIFN+M Sbjct 1938 SIHPVWFQALKKVLENLSF--QSNLIDRLCYSKHLFKSTYYEVAGGVPSGCSGTSIFNTM 1995 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+L YK IDLD LK+IAYGDDVI SY + +D +A GK YGLT+TPADK Sbjct 1996 INNIIIRTLVLDAYKNIDLDKLKIIAYGDDVIFSYKYTLDMEAIANEGKKYGLTITPADK 2055 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F+ + + NVTFLKR F+ DE++ FLIHP P++EIHESIRWTK P Q+HV SLC Sbjct 2056 SNEFKKLDYSNVTFLKRGFKQDERHTFLIHPTFPVEEIHESIRWTKKPSQMQEHVLSLCH 2115 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 L WHNG + Y F +KIRSV GRAL +P Y L W + F Sbjct 2116 LMWHNGRKVYEDFSSKIRSVSAGRALYIPPYDLLKHEWYEKF 2157 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A1B] Sequence ID: P12916.3 Length: 2157 Range 1: 1698 to 2157 Score:561 bits(1447), Expect:0.0, Method:Compositional matrix adjust., Identities:262/462(57%), Positives:349/462(75%), Gaps:3/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G+I+ + + E G P I+ PSKTKL+PS F+ VF G KEPAV NDPRLK +F+EA+FS Sbjct 1698 GQIKISKHANECGLPTIHTPSKTKLQPSVFYDVFPGSKEPAVSRDNDPRLKVNFKEALFS 1757 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN ++++M+ A+ HY+ QL++LDI+++ + LED+++G +GLEALDL+TSAG+PY Sbjct 1758 KYKGNTECSLNQHMEIAIAHYSAQLITLDIDSKPIALEDSVFGIEGLEALDLNTSAGFPY 1817 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V MG KKRD++N +T+D +++ LD YG++LP++T++KDELR K K+ GK+R+IEASS Sbjct 1818 VTMGIKKRDLINNKTKDISRLKEALDKYGVDLPMITFLKDELRKKEKISAGKTRVIEASS 1877 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME-EKLFAFDYTGYDA 239 +ND++ R FGNL++ FH NPGV+TGSAVGCDP+ FWSKIPV+++ + + AFDYT YD Sbjct 1878 INDTILFRTTFGNLFSKFHLNPGVVTGSAVGCDPETFWSKIPVMLDGDCIMAFDYTNYDG 1937 Query 240 SLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 S+ P WF+ALK VLE + F + + ID L +S HL+K+ Y V GG+PSGCSGTSIFN+M Sbjct 1938 SIHPVWFQALKKVLENLSF--QSNLIDRLCYSKHLFKSTYYEVAGGVPSGCSGTSIFNTM 1995 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+L YK IDLD LK+IAYGDDVI SY + +D +A GK YGLT+TPADK Sbjct 1996 INNIIIRTLVLDAYKNIDLDKLKIIAYGDDVIFSYKYTLDMEAIANEGKKYGLTITPADK 2055 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F+ + + NVTFLKR F+ DEK+ FLIHP P++EI+ESIRWTK P Q+HV SLC Sbjct 2056 STEFKKLDYNNVTFLKRGFKQDEKHTFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCH 2115 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 L WHNG + Y F +KIRSV GRAL +P Y L W + F Sbjct 2116 LMWHNGRKVYEDFSSKIRSVSAGRALYIPPYDLLKHEWYEKF 2157 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A2] Sequence ID: P04936.3 Length: 2150 Range 1: 1691 to 2150 Score:558 bits(1438), Expect:1e-180, Method:Compositional matrix adjust., Identities:263/462(57%), Positives:343/462(74%), Gaps:3/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G+I + + E P I+ P KTKL+PS F+ VF G KEPAVL++ D RL+ DF EA+FS Sbjct 1691 GQITLSKKTSECNLPSIHTPCKTKLQPSVFYDVFPGSKEPAVLSEKDARLQVDFNEALFS 1750 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN ++++++ A HYA QL++LDI+ + + LED+++GTDGLEALDL+TSAG+PY Sbjct 1751 KYKGNTDCSINDHIRIASSHYAAQLITLDIDPKPITLEDSVFGTDGLEALDLNTSAGFPY 1810 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 +AMG KKRD++N +T+D ++++ +D YG++LP+VT++KDELR KV +GK+R+IEASS Sbjct 1811 IAMGVKKRDLINNKTKDISKLKEAIDKYGVDLPMVTFLKDELRKHEKVIKGKTRVIEASS 1870 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEK-LFAFDYTGYDA 239 +ND++ R FGNL++ FH NPG++TGSAVGCDP++FWSKIP ++++K + AFDYT YD Sbjct 1871 VNDTLLFRTTFGNLFSKFHLNPGIVTGSAVGCDPEVFWSKIPAMLDDKCIMAFDYTNYDG 1930 Query 240 SLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 S+ P WFEALK VL + F + ID L S H++KN Y V+GG+PSGCSGTSIFN+M Sbjct 1931 SIHPIWFEALKQVLVDLSFNPTL--IDRLCKSKHIFKNTYYEVEGGVPSGCSGTSIFNTM 1988 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+L YK IDLD LK+IAYGDDVI SY HE+D +A G YGLT+TPADK Sbjct 1989 INNIIIRTLVLDAYKNIDLDKLKIIAYGDDVIFSYIHELDMEAIAIEGVKYGLTITPADK 2048 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S TF + + NVTFLKR F+ DEKY FLIHP P EI ESIRWTK P +HV SLC Sbjct 2049 SNTFVKLDYSNVTFLKRGFKQDEKYNFLIHPTFPEDEIFESIRWTKKPSQMHEHVLSLCH 2108 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 L WHNG + Y KF+ KIRSV GRAL +P Y L W + F Sbjct 2109 LMWHNGRDAYKKFVEKIRSVSAGRALYIPPYDLLLHEWYEKF 2150 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [rhinovirus A16] Sequence ID: Q82122.4 Length: 2153 Range 1: 1694 to 2153 Score:552 bits(1422), Expect:3e-178, Method:Compositional matrix adjust., Identities:258/462(56%), Positives:349/462(75%), Gaps:3/462(0%) Query 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFS 60 G+IQ + K+VG P I+ P+KTKL+PS F+ +F G KEPAVLT+ DPRLK DF+ A+FS Sbjct 1694 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFS 1753 Query 61 KYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPY 120 KY GN ++E+++ AV HY+ QL +LDI+ + + +ED+++G DGLEALDL+TSAGYPY Sbjct 1754 KYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPY 1813 Query 121 VAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASS 180 V +G KK+D++N +T+D +++ LD Y ++LP++T++KDELR K K+ GK+R+IEASS Sbjct 1814 VTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAGKTRVIEASS 1873 Query 181 LNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME-EKLFAFDYTGYDA 239 +ND++ R +GNL++ FH NPGV+TG AVGCDP+ FWSKIP++++ + + AFDYT YD Sbjct 1874 INDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDG 1933 Query 240 SLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 S+ P WF+AL MVL+ + F + I+ L +S H++K+ Y V+GG+PSGCSGTSIFNSM Sbjct 1934 SIHPIWFKALGMVLDNLSFNPTL--INRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSM 1991 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+IIRTL+L YK IDLD LK+IAYGDDVI SY +++D +A+ G+ YGLT+TPADK Sbjct 1992 INNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADK 2051 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S+ F+ + + NVTFLKR FR D+KY FLIHP P++EI+ESIRWTK P Q+HV SLC Sbjct 2052 SSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCH 2111 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 L WHNG E Y F KIRSV GRAL +P Y L W + F Sbjct 2112 LMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 2153 >RecName: Full=Genome polyprotein; Contains: RecName: Full=P1; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=P2; Contains: RecName: Full=Protease 2A; Short=P2A; AltName: Full=Picornain 2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=P3; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human rhinovirus 89 ATCC VR-1199] Sequence ID: P07210.3 Length: 2164 Range 1: 1719 to 2164 Score:526 bits(1355), Expect:9e-169, Method:Compositional matrix adjust., Identities:260/448(58%), Positives:352/448(78%), Gaps:3/448(0%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 P ++ SKT+L+PS FH VF G KEPAVL+ NDPRL+TDF+ A+FSKY GN +V +M Sbjct 1719 PSVHVSSKTRLQPSVFHDVFPGTKEPAVLSSNDPRLETDFDSALFSKYKGNPACQVTPHM 1778 Query 75 KEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQ 134 K AV HYA QL +LDIN + + LE++++G +GLEALDL+TSAG+PYV++G KK+D+++K+ Sbjct 1779 KIAVAHYAAQLSTLDINPQPLSLEESVFGIEGLEALDLNTSAGFPYVSLGIKKKDLIDKK 1838 Query 135 TRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNL 194 T+D +++K +D YGI+LP+VT++KDELR K K++ GK+R+IEA+S+ND+V R FGNL Sbjct 1839 TKDITKLRKAIDEYGIDLPMVTFLKDELRKKEKIKDGKTRVIEANSVNDTVLFRSVFGNL 1898 Query 195 YAAFHKNPGVITGSAVGCDPDLFWSKIPVLME-EKLFAFDYTGYDASLSPAWFEALKMVL 253 ++AFHKNPG++TGSAVGCDP++FWS IP++++ E L AFDY+ YD SL P WF+ L M+L Sbjct 1899 FSAFHKNPGIVTGSAVGCDPEVFWSTIPLMLDGECLMAFDYSNYDGSLHPVWFKCLSMLL 1958 Query 254 EKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTY 313 E IGF ++ I+ + +S H+YK+K Y V+GGMPSGC+GTSIFN++INN+IIRTL+L Y Sbjct 1959 EDIGFSSQL--INQICNSKHIYKSKYYEVEGGMPSGCAGTSIFNTIINNIIIRTLVLDAY 2016 Query 314 KGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTF 373 K IDLD LK++AYGDDVI SY ++D ++LA+ G+ YGLT+TPADKS F+ +T++NVTF Sbjct 2017 KNIDLDKLKILAYGDDVIFSYNFKLDMAVLAKEGEKYGLTITPADKSDVFQELTYKNVTF 2076 Query 374 LKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFL 433 LKR FRADE++ FLIHP P+ EIH+SIRWTK+P Q+HV SLC L WHNG Y +F+ Sbjct 2077 LKRGFRADERHSFLIHPTFPVAEIHDSIRWTKNPSCMQEHVLSLCHLMWHNGRHAYQEFI 2136 Query 434 AKIRSVPIGRALLLPEYSTLYRRWLDSF 461 IRSV GRAL +P Y L W + F Sbjct 2137 KGIRSVSAGRALYIPAYEVLEHEWYEKF 2164 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Mengo virus] Sequence ID: P12296.3 Length: 2293 Range 1: 1843 to 2292 Score:253 bits(647), Expect:5e-73, Method:Compositional matrix adjust., Identities:145/459(32%), Positives:256/459(55%), Gaps:21/459(4%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 P I+ P KT L P+ VF+ PAVL+K DPR D +E FSK+ N+ T + Sbjct 1843 PRIHVPRKTALRPTVARQVFQPAFAPAVLSKFDPRTDADVDEVAFSKHTSNQET-LPPVF 1901 Query 75 KEAVDHYAGQLMSL-DINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNK 133 + YA ++ +L + ++ ++ A+ G +G++ +D +TS G PY +G ++ D+++ Sbjct 1902 RMVAREYANRVFALLGRDNGRLSVKQALDGLEGMDPMDKNTSPGLPYTTLGMRRTDVVDW 1961 Query 134 QTRD-----TKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMR 188 +T + ++K+ + ++ T++KDELR KV+ K+R+++ + R Sbjct 1962 ETATLIPFAAERLEKMNNKDFSDIVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGR 2021 Query 189 MAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPAWF 246 G + F PG+ GSA+GCDPD+ W+ V M+ E+++ DY+ +D++ S A F Sbjct 2022 QLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAVF 2081 Query 247 EAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNL 303 L + E+ GF V DY++ L S H Y+ K Y + GG+PSGC+ TS+ N+++NN+ Sbjct 2082 RLLAEEFFSEENGFDPLVKDYLESLAISKHAYEEKRYLITGGLPSGCAATSMLNTIMNNI 2141 Query 304 IIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATF 363 IIR L TYK + D +K+++YGDD++ + ++++ + S G +TPA+K++TF Sbjct 2142 IIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDRVRTSLAKTGYKITPANKTSTF 2201 Query 364 E-TVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAW 422 T E+V FLKR F+ + L PVM + + + + + P + + S+ +LA Sbjct 2202 PLESTLEDVVFLKRKFKKEGP---LYRPVMNREALEAMLSYYR-PGTLSEKLTSITMLAV 2257 Query 423 HNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 H+G++EY++ A R V +++P + ++ RW F Sbjct 2258 HSGKQEYDRLFAPFREV----GVIVPTFESVEYRWRSLF 2292 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 1842 to 2291 Score:248 bits(632), Expect:5e-71, Method:Compositional matrix adjust., Identities:143/459(31%), Positives:254/459(55%), Gaps:21/459(4%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 P I+ P KT L P+ VF+ PAVL+K DPR + D +E FSK+ N+ + Sbjct 1842 PRIHVPRKTALRPTVARRVFQPAYAPAVLSKFDPRTEADVDEVAFSKHTSNQ-ESLPPVF 1900 Query 75 KEAVDHYAGQLMSL-DINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNK 133 + YA ++ +L + ++ ++ A+ G +G++ +D +TS G PY A+G ++ D+++ Sbjct 1901 RMVAKEYANRVFTLLGRDNGRLTVKQALEGLEGMDPMDKNTSPGLPYTALGMRRTDVVDW 1960 Query 134 QTRD-----TKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMR 188 ++ ++K+ + ++ T++KDELR KV+ K+R+++ + R Sbjct 1961 ESATLIPYAADRLKKMNEGDFSDIVYQTFLKDELRPVEKVQAAKTRIVDVPPFEHCILGR 2020 Query 189 MAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPAWF 246 G + F PG+ GSA+GCDPD+ W+ V M+ E+++ DY+ +D++ S A F Sbjct 2021 QLLGRFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMF 2080 Query 247 EAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNL 303 L + + GF V +Y++ L S H ++ K Y + GG+PSGC+ TS+ N+++NN+ Sbjct 2081 RLLAEEFFTPENGFDPLVKEYLESLAISTHAFEEKRYLITGGLPSGCAATSMLNTIMNNI 2140 Query 304 IIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATF 363 IIR L TYK + D +K+++YGDD++ + ++++ + S G +TPA+K++TF Sbjct 2141 IIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDKVRASLAKTGYKITPANKTSTF 2200 Query 364 ET-VTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAW 422 T E+V FLKR F+ + L PVM +E E++ P + + S+ +LA Sbjct 2201 PLDSTLEDVVFLKRKFKKEGP---LYRPVM-NREALEAMLSYYRPGTLSEKLTSITMLAV 2256 Query 423 HNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 H+G+ EY++ A R V +++P + ++ RW F Sbjct 2257 HSGKPEYDRLFAPFREV----GVVVPSFESVEYRWRSLF 2291 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 1842 to 2291 Score:247 bits(631), Expect:7e-71, Method:Compositional matrix adjust., Identities:141/459(31%), Positives:254/459(55%), Gaps:21/459(4%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 P I+ P KT L P+ VF+ PAVL+K DPR + D +E FSK+ N+ + Sbjct 1842 PRIHVPRKTALRPTVARRVFQPAYAPAVLSKFDPRTEADVDEVAFSKHTSNQ-ESLPPVF 1900 Query 75 KEAVDHYAGQLMSL-DINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNK 133 + YA ++ +L + ++ ++ A+ G +G++ +D +TS G PY A+G ++ D+++ Sbjct 1901 RMVAKEYANRVFTLLGRDNGRLTVKQALEGLEGMDPMDKNTSPGLPYTALGMRRTDVVDW 1960 Query 134 QTRD-----TKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMR 188 ++ ++K+ + ++ T++KDELR KV+ K+R+++ + R Sbjct 1961 ESATLIPYAADRLKKMNEGDFSDIVYQTFLKDELRPVEKVQAAKTRIVDVPPFEHCILGR 2020 Query 189 MAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPAWF 246 G + F PG+ GSA+GCDPD+ W+ V M+ E+++ DY+ +D++ S A F Sbjct 2021 QLLGRFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMF 2080 Query 247 EAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNL 303 L + + GF V +Y++ L S H ++ K Y + GG+PSGC+ TS+ N+++NN+ Sbjct 2081 RLLAEEFFTPENGFDPLVKEYLESLAISTHAFEEKRYLITGGLPSGCAATSMLNTIMNNI 2140 Query 304 IIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATF 363 IIR L TYK + D +K+++YGDD++ + ++++ + S G +TPA+K++TF Sbjct 2141 IIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLNFDKVRASLAKTGYKITPANKTSTF 2200 Query 364 ET-VTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAW 422 T E+V FLKR F+ + L PVM + + + + + P + + S+ +LA Sbjct 2201 PLDSTLEDVVFLKRKFKKEGP---LYRPVMNREALEAMLSYYR-PGTLSEKLTSITMLAV 2256 Query 423 HNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 H+G+ EY++ A R V +++P + ++ RW F Sbjct 2257 HSGKPEYDRLFAPFREV----GVVVPSFESVEYRWRSLF 2291 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [cardiovirus A1] Sequence ID: Q66765.1 Length: 2292 Range 1: 1842 to 2291 Score:246 bits(627), Expect:2e-70, Method:Compositional matrix adjust., Identities:141/459(31%), Positives:253/459(55%), Gaps:21/459(4%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 P I+ P KT L P+ VF+ PAVL+K DPR + D +E FSK+ N+ + Sbjct 1842 PRIHVPRKTALRPTVARQVFQPAYAPAVLSKFDPRTEADVDEVAFSKHTSNQ-ESLPPVF 1900 Query 75 KEAVDHYAGQLMSL-DINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNK 133 + YA ++ +L + ++ ++ A+ G +G++ +D +TS G PY A+G ++ D+++ Sbjct 1901 RMVAKEYANRVFTLLGKDNGRLTVKQALEGLEGMDPMDRNTSPGLPYTALGMRRTDVVDW 1960 Query 134 QTRD-----TKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMR 188 ++ + ++K+ + + T++KDELR KV+ K+R+++ + R Sbjct 1961 ESATLIPFAAERLRKMNEGDFSEVVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGR 2020 Query 189 MAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPAWF 246 G + F PG+ GSA+GCDPD+ W+ V M+ E+++ DY+ +D++ S A F Sbjct 2021 QLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMF 2080 Query 247 EAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNL 303 L + + GF +Y++ L S H ++ K + + GG+PSGC+ TS+ N+++NN+ Sbjct 2081 RLLAEEFFTPENGFDPLTREYLESLAISTHAFEEKRFLITGGLPSGCAATSMLNTIMNNI 2140 Query 304 IIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATF 363 IIR L TYK + D +K+++YGDD++ + +++D + S G +TPA+ ++TF Sbjct 2141 IIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLDFDKVRASLAKTGYKITPANTTSTF 2200 Query 364 E-TVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAW 422 T E+V FLKR F+ + L PVM +E E++ P + + S+ +LA Sbjct 2201 PLNSTLEDVVFLKRKFKKEGP---LYRPVM-NREALEAMLSYYRPGTLSEKLTSITMLAV 2256 Query 423 HNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 H+G++EY++ A R V +++P + ++ RW F Sbjct 2257 HSGKQEYDRLFAPFREV----GVVVPSFESVEYRWRSLF 2291 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus] Sequence ID: P03304.1 Length: 2290 Range 1: 1840 to 2289 Score:246 bits(627), Expect:2e-70, Method:Compositional matrix adjust., Identities:141/459(31%), Positives:253/459(55%), Gaps:21/459(4%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 P I+ P KT L P+ VF+ PAVL+K DPR + D +E FSK+ N+ + Sbjct 1840 PRIHVPRKTALRPTVARQVFQPAYAPAVLSKFDPRTEADVDEVAFSKHTSNQ-ESLPPVF 1898 Query 75 KEAVDHYAGQLMSL-DINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNK 133 + YA ++ +L + ++ ++ A+ G +G++ +D +TS G PY A+G ++ D+++ Sbjct 1899 RMVAKEYANRVFTLLGKDNGRLTVKQALEGLEGMDPMDRNTSPGLPYTALGMRRTDVVDW 1958 Query 134 QTRD-----TKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMR 188 ++ + ++K+ + + T++KDELR KV+ K+R+++ + R Sbjct 1959 ESATLIPFAAERLRKMNEGDFSEVVYQTFLKDELRPIEKVQAAKTRIVDVPPFEHCILGR 2018 Query 189 MAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPAWF 246 G + F PG+ GSA+GCDPD+ W+ V M+ E+++ DY+ +D++ S A F Sbjct 2019 QLLGKFASKFQTQPGLELGSAIGCDPDVHWTAFGVAMQGFERVYDVDYSNFDSTHSVAMF 2078 Query 247 EAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNL 303 L + + GF +Y++ L S H ++ K + + GG+PSGC+ TS+ N+++NN+ Sbjct 2079 RLLAEEFFTPENGFDPLTREYLESLAISTHAFEEKRFLITGGLPSGCAATSMLNTIMNNI 2138 Query 304 IIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATF 363 IIR L TYK + D +K+++YGDD++ + +++D + S G +TPA+ ++TF Sbjct 2139 IIRAGLYLTYKNFEFDDVKVLSYGDDLLVATNYQLDFDKVRASLAKTGYKITPANTTSTF 2198 Query 364 E-TVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAW 422 T E+V FLKR F+ + L PVM +E E++ P + + S+ +LA Sbjct 2199 PLNSTLEDVVFLKRKFKKEGP---LYRPVM-NREALEAMLSYYRPGTLSEKLTSITMLAV 2254 Query 423 HNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 H+G++EY++ A R V +++P + ++ RW F Sbjct 2255 HSGKQEYDRLFAPFREV----GVVVPSFESVEYRWRSLF 2289 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Aichi virus A846/88] Sequence ID: O91464.2 Length: 2432 Range 1: 1969 to 2428 Score:243 bits(620), Expect:2e-69, Method:Compositional matrix adjust., Identities:166/468(35%), Positives:248/468(52%), Gaps:24/468(5%) Query 8 PSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLK--TDFEEAIFSKYVGN 65 P+ EV P +N ++L PS + F K+PA L +ND RL+ D + +F K+ Sbjct 1969 PTAEV-RPGVNVNRMSRLHPSPAYGAFPVKKQPAPLKRNDKRLQEGVDLDTQLFLKHGKG 2027 Query 66 KITEVDEYMKEAVDHYAGQL-MSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMG 124 +TE ++ A D Y SL + T+ E A++GT +E LD+ +AGYP+ +G Sbjct 2028 DVTEPWPGLEAAADLYFSTFPTSLPVLTQ----EQAIHGTPNMEGLDMGQAAGYPWNTLG 2083 Query 125 KKKRDILNKQTRDT----KEMQKLLDTYGINLPLV--TYVKDELRSKTKVEQGKSRLIEA 178 + +R + ++ E+Q ++ + V T++KDELR KVEQG +R++EA Sbjct 2084 RSRRSLFDEVEPGVFVPKPELQAEINQTLEDPDYVYSTFLKDELRPTAKVEQGLTRIVEA 2143 Query 179 SSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTG 236 + ++ VA RM G L PG GSAVGC+PD+ W+ E +++ DY Sbjct 2144 APIHAIVAGRMLLGGLIDYMQGRPGE-HGSAVGCNPDVHWTSFFYAFSEFSQVYDLDYKC 2202 Query 237 YDASLSPAWFEALKMVLEKIGFGDRVD-YIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSI 295 +DA+L A F + L +I RV YI + HSHH+Y N+ Y + GG PSGC TSI Sbjct 2203 FDATLPSAVFTLVADHLTRITGDPRVGRYIHSIRHSHHIYGNRMYDMIGGNPSGCVATSI 2262 Query 296 FNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQ-SGKDYGLTM 354 N++INN+ + + L++ + ++AYGDDVI + + S L + K L + Sbjct 2263 LNTIINNICVLSALIQ-HPDFSPSRFHILAYGDDVIYATEPPIHPSFLREFYQKHTPLVV 2321 Query 355 TPADKSATF-ETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDH 413 TPA+K F T T VTFLKR+F D+ P IHPVM +S+ W +D + QD Sbjct 2322 TPANKGQDFPPTSTIYEVTFLKRWFVPDDVRPIYIHPVMDPDTYEQSVMWLRD-GDFQDV 2380 Query 414 VRSLCLLAWHNGEEEYNKFLAKIR--SVPIGRALLLPEYSTLYRRWLD 459 V SLC LA+H+G + Y + K+R + G A YS L RWL+ Sbjct 2381 VTSLCHLAFHSGPKTYAAWCMKVREQCLKSGFAPNFLPYSYLQLRWLN 2428 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN BEAN 8386)] Sequence ID: P08544.1 Length: 2303 Range 1: 1853 to 2302 Score:238 bits(606), Expect:1e-67, Method:Compositional matrix adjust., Identities:146/461(32%), Positives:246/461(53%), Gaps:26/461(5%) Query 16 IINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMK 75 +++ P KTKL + H VF+ EPAVL++ DPR D + FSK+ N + + Sbjct 1853 VVHVPRKTKLRRTVAHDVFQPKFEPAVLSRYDPRTDKDVDVVAFSKHTTN-MESLPPIFD 1911 Query 76 EAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQ 134 YA ++ + L + +E A+ G G++ ++ TS G PY G ++ D+LN Sbjct 1912 VVCGEYANRVFTILGKENGLLTVEQAVLGLPGMDPMEKDTSPGLPYTQQGLRRTDLLN-- 1969 Query 135 TRDTKEMQKLLD------TYGINLPLV--TYVKDELRSKTKVEQGKSRLIEASSLNDSVA 186 T +M LD G+ +V +++KDE+R K+ + K+R+++ + Sbjct 1970 -FITAKMTPQLDYAHSKLVIGVYDDVVYQSFLKDEIRPIEKIHEAKTRIVDVPPFAHCIW 2028 Query 187 MRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPA 244 R G + F PG+ GSA+G DPD+ W++ V + ++ DY+ +DAS S A Sbjct 2029 GRQLLGRFASKFQTKPGLELGSAIGTDPDVDWTRYAVELSGFNYVYDVDYSNFDASHSTA 2088 Query 245 WFEAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMIN 301 FE L E+ GF R+ +Y+ L S H Y+++ ++GG+PSGC+ TS+ N+++N Sbjct 2089 MFECLINNFFTEQNGFDRRIAEYLRSLAVSRHAYEDRRVLIRGGLPSGCAATSMLNTIMN 2148 Query 302 NLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSA 361 N+IIR L TY D D +K+++YGDD++ +++D +L+ + +G +TPA+K+ Sbjct 2149 NVIIRAALYLTYSNFDFDDIKVLSYGDDLLIGTNYQIDFNLVKERLAPFGYKITPANKTT 2208 Query 362 TFE-TVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 TF T ++VTFLKR F Y L P M + + + K P ++ + S+ LL Sbjct 2209 TFPLTSHLQDVTFLKRRFVRFNSY--LFRPQMDAVNLKAMVSYCK-PGTLKEKLMSIALL 2265 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 A H+G + Y++ R+V +++P YS++ RWL F Sbjct 2266 AVHSGPDIYDEIFLPFRNV----GIVVPTYSSMLYRWLSLF 2302 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; AltName: Full=Protein 3B; Short=P3B; AltName: Full=Viral protein genome-linked; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Seneca Valley virus USA/SSV-001] Sequence ID: Q155Z9.1 Length: 2181 Range 1: 1731 to 2176 Score:235 bits(599), Expect:1e-66, Method:Compositional matrix adjust., Identities:152/458(33%), Positives:246/458(53%), Gaps:29/458(6%) Query 17 INAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLK--TDFEEAIFSKYVGNKITEVD--- 71 ++ P K+KL + H V++ EPAVL+K DPRL D +E I+SK+ N + Sbjct 1731 VHVPRKSKLRKTTAHAVYKPEFEPAVLSKFDPRLNKDVDLDEVIWSKHTANVPYQPPLFY 1790 Query 72 EYMKEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDI 130 YM E YA ++ S L + + + +++A+ G GL+ +D T+ G PY G ++ D+ Sbjct 1791 TYMSE----YAHRVFSFLGKDNDILTVKEAILGIPGLDPMDPHTAPGLPYAINGLRRTDL 1846 Query 131 LN--KQTRDTK---EMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSV 185 ++ T D ++QK LD + T++KDE+R KV GK+R+++ SL + Sbjct 1847 VDFVNGTVDAALAVQIQKFLDGDYSDHVFQTFLKDEIRPSEKVRAGKTRIVDVPSLAHCI 1906 Query 186 AMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSP 243 RM G A F +PG + GSA+G DPD+FW+ I +E + + DY+ +D+S Sbjct 1907 VGRMLLGRFAAKFQSHPGFLLGSAIGSDPDVFWTVIGAQLEGRKNTYDVDYSAFDSSHGT 1966 Query 244 AWFEALKMVLEKI--GFGDRVD-YIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMI 300 FEAL + GF + Y+ L S H Y + + GG+PSGC+ TS+ N+++ Sbjct 1967 GSFEALISHFFTVDNGFSPALGPYLRSLAVSVHAYGERRIKITGGLPSGCAATSLLNTVL 2026 Query 301 NNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS 360 NN+IIRT L TYK + D + +IAYGDD++ +++D + +A+ G MTPA+K Sbjct 2027 NNVIIRTALALTYKEFEYDMVDIIAYGDDLLVGTDYDLDFNEVARRAAKLGYKMTPANKG 2086 Query 361 ATF-ETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 + F T + + FLKR F + L PVM +K + + + K P + ++S+ + Sbjct 2087 SVFPPTSSLSDAVFLKRKFVQNNDG--LYKPVMDLKNLEAMLSYFK-PGTLLEKLQSVSM 2143 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRW 457 LA H+G+EEY++ + P +P + L RW Sbjct 2144 LAQHSGKEEYDRLMH-----PFADYGAVPSHEYLQARW 2176 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's encephalomyelitis virus (STRAIN DA)] Sequence ID: P13899.1 Length: 2301 Range 1: 1851 to 2300 Score:234 bits(598), Expect:2e-66, Method:Compositional matrix adjust., Identities:148/463(32%), Positives:244/463(52%), Gaps:30/463(6%) Query 16 IINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMK 75 +++ P KTKL + H VF+ EPAVL++ DPR D + FSK+ N + + Sbjct 1851 VVHVPRKTKLRRTVAHDVFQPKFEPAVLSRYDPRTDKDVDVVAFSKHTTN-MESLPPVFD 1909 Query 76 EAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQ 134 D YA ++ + L + + +E A+ G G++ ++ TS G PY G ++ D+LN Sbjct 1910 IVCDEYANRVFTILGKDNGLLTVEQAVLGLPGMDPMEKDTSPGLPYTQQGLRRTDLLN-- 1967 Query 135 TRDTKEMQKLLDTYGINLPLVTY--------VKDELRSKTKVEQGKSRLIEASSLNDSVA 186 +T +M LD L L Y +KDE+R K+ + K+R+++ + Sbjct 1968 -FNTAKMTPQLDYAHSKLVLGVYDDVVYQSFLKDEIRPLEKIHEAKTRIVDVPPFAHCIW 2026 Query 187 MRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAF----DYTGYDASLS 242 R G + F PG+ GSA+G DPD+ W+ P E F + DY+ +DAS S Sbjct 2027 GRQLLGRFASKFQTKPGLELGSAIGTDPDVDWT--PYAAELSGFNYVYDVDYSNFDASHS 2084 Query 243 PAWFEAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 A FE L E+ GF R+ +Y+ L S H Y+++ ++GG+ SGC+ TS+ N++ Sbjct 2085 TAMFECLIKNFFTEQNGFDRRIAEYLRSLAVSRHAYEDRRVLIRGGLLSGCAATSMLNTI 2144 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 +NN+IIR L TY + D +K+++YGDD++ +++D +L+ + +G +TPA+K Sbjct 2145 MNNVIIRAALYLTYSNFEFDDIKVLSYGDDLLIGTNYQIDFNLVKERLAPFGYKITPANK 2204 Query 360 SATFE-TVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLC 418 + TF T ++VTFLKR F Y L P M + + + K P ++ + S+ Sbjct 2205 TTTFPLTSHLQDVTFLKRRFVRFNSY--LFRPQMDAVNLKAMVSYCK-PGTLKEKLMSIA 2261 Query 419 LLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 LLA H+G + Y++ R+V +++P YS++ RWL F Sbjct 2262 LLAVHSGPDIYDEIFLPFRNV----GIVVPTYSSMLYRWLSLF 2300 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Theiler's murine encephalomyeltits virus GDVII] Sequence ID: P08545.2 Length: 2303 Range 1: 1853 to 2302 Score:233 bits(595), Expect:5e-66, Method:Compositional matrix adjust., Identities:143/461(31%), Positives:242/461(52%), Gaps:26/461(5%) Query 16 IINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMK 75 +++ P KTKL + H VF+ EPAVL++ DPR D + FSK+ N + + Sbjct 1853 VVHVPRKTKLRRTVAHDVFQPKFEPAVLSRYDPRTDKDVDVVAFSKHTTN-MESLPPIFD 1911 Query 76 EAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQ 134 YA ++ + L + + +E A+ G G++ ++ TS G PY G ++ D+L+ Sbjct 1912 IVCGEYANRVFTILGKDNGLLTVEQAVLGLSGMDPMEKDTSPGLPYTQQGLRRTDLLD-- 1969 Query 135 TRDTKEMQKLLDTYGINLPLVTY--------VKDELRSKTKVEQGKSRLIEASSLNDSVA 186 +T +M LD L L Y +KDE+R K+ + K+R+++ + Sbjct 1970 -FNTAKMTPQLDYAHSKLVLGVYDDVVYQSFLKDEIRPLEKIHEAKTRIVDVPPFAHCIW 2028 Query 187 MRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLSPA 244 R G + F PG GSA+G DPD+ W++ + ++ DY+ +DAS S A Sbjct 2029 GRQLLGRFASKFQTKPGFELGSAIGTDPDVDWTRYAAELSGFNYVYDVDYSNFDASHSTA 2088 Query 245 WFEAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMIN 301 FE L E+ GF R+ +Y+ L S H Y+++ ++GG+PSGC+ TS+ N+++N Sbjct 2089 MFECLINNFFTEQNGFDRRIAEYLRSLAVSRHAYEDRRVLIRGGLPSGCAATSMLNTIMN 2148 Query 302 NLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSA 361 N+IIR L TY + D +K+++YGDD++ +++D +L+ + +G +TPA+K+ Sbjct 2149 NVIIRAALYLTYSNFEFDDIKVLSYGDDLLIGTNYQIDFNLVKERLAPFGYKITPANKTT 2208 Query 362 TFE-TVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLL 420 TF T ++VTFLKR F Y L P M + + + K P ++ + S+ LL Sbjct 2209 TFPLTSHLQDVTFLKRRFVRFNSY--LFRPQMDAVNLKAMVSYCK-PGTLKEKLMSIALL 2265 Query 421 AWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 A H+G + Y++ R+V +++P Y ++ RWL F Sbjct 2266 AVHSGPDIYDEIFLPFRNV----GIVVPTYDSMLYRWLSLF 2302 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Saffold virus] Sequence ID: C0MHL9.1 Length: 2295 Range 1: 1845 to 2294 Score:231 bits(589), Expect:3e-65, Method:Compositional matrix adjust., Identities:141/460(31%), Positives:245/460(53%), Gaps:24/460(5%) Query 16 IINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMK 75 +++ P KTKL + H F+ EPAVL++ DPR D ++ FSK+ N + E+ Sbjct 1845 VVHVPRKTKLRRTVAHPCFQPKFEPAVLSRYDPRTTKDVDQVAFSKHTTN-LEELPSVFS 1903 Query 76 EAVDHYAGQLMSLDINTEQMCL--EDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILN- 132 YA ++ + I E L E A+ G G++ ++ TS G PY G K+ ++N Sbjct 1904 MVAREYATRVFT-TIGKENKILTPEQAILGLPGMDPMEKDTSPGLPYTQQGLKRAQLVNF 1962 Query 133 ---KQTRDTKEMQ-KLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMR 188 ++ KE KL + ++ +++KDE+R K+ + K+R+++ + + R Sbjct 1963 EQGTMVQNLKEAHTKLTEGNYEDILYQSFLKDEIRPIEKIHEAKTRIVDVPPFHHCIWGR 2022 Query 189 MAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIP--VLMEEKLFAFDYTGYDASLSPAWF 246 G + F NPG+ GSA+G DPD W+ +L + ++ DY+ +DAS S A F Sbjct 2023 QLLGRFASRFQTNPGLDLGSAIGTDPDTDWTAFAFQLLQYKYVYDVDYSNFDASHSTAMF 2082 Query 247 EAL--KMVLEKIGFGDRV-DYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNL 303 E L + GF +R+ DY+ L S H ++ + V+GG+PSGC+ TS+ N++INN+ Sbjct 2083 EVLIENFFTTENGFDERIGDYLRSLAVSRHAFEERRVLVRGGLPSGCAATSMLNTIINNI 2142 Query 304 IIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATF 363 +IR L TY + D +K+++YGDD++ + ++++ +L+ Q + +TPA+K+ F Sbjct 2143 VIRAALHLTYSNFEFDDIKVLSYGDDLLIATNYQINFNLVKQRLAPFNYKITPANKTVEF 2202 Query 364 -ETVTWENVTFLKR-FFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLA 421 E VTFLKR F R + L P M + + + + + P ++ + S+ LLA Sbjct 2203 PEISNLYEVTFLKRKFVRYNS---CLFKPQMDTENLKAMVSYCR-PGTLKEKLNSIALLA 2258 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDSF 461 H+G+ Y++ R + +++PE+ T+ RWL+ F Sbjct 2259 VHSGKSVYDEIFDPFRRI----GIIIPEHGTMLYRWLNLF 2294 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus A22/550/Azerbaijan/65] Sequence ID: P49303.1 Length: 2336 Range 1: 1881 to 2328 Score:229 bits(583), Expect:2e-64, Method:Compositional matrix adjust., Identities:150/461(33%), Positives:246/461(53%), Gaps:35/461(7%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K+TE D+ + + Sbjct 1881 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMTEEDKALFRRC 1940 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L + L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1941 AADYASRLHNVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGTLIDFENG 2000 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + +L++ T++KDE+R KV GK+R+++ + + RM G Sbjct 2001 TVGPEVASALELMEKRQYKFTCQTFLKDEVRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2060 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2061 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYKNVWDVDYSAFDANHCS---DAMN 2117 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2118 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2177 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS---- 360 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2178 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2237 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCL 419 +++T +VTFLKR FR D F PVM K + + + + R T Q+ + S+ Sbjct 2238 VLGQSIT--DVTFLKRHFRMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAG 2292 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 LA H+G +EY + P +P Y +LY RW+++ Sbjct 2293 LAVHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2328 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Human klassevirus 1] Sequence ID: C6KEF6.1 Length: 2370 Range 1: 1908 to 2360 Score:228 bits(580), Expect:4e-64, Method:Composition-based stats., Identities:151/463(33%), Positives:243/463(52%), Gaps:27/463(5%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLK--TDFEEAIFSKYVGNKITEVDE 72 P + +++L PS F KEPA L++ DPRL TD + +K+ I Sbjct 1908 PPAHVSRRSRLHPSPAFGAFPITKEPAALSRKDPRLPEGTDLDAITLAKHDKGDIATPWP 1967 Query 73 YMKEAVDHYAGQLM-SLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL 131 M+EA D Y QL SL + ++ EDA+ G D ++A+DLS S GYP+ G+ +R + Sbjct 1968 CMEEAADWYFSQLPDSLPVLSQ----EDAIRGLDHMDAIDLSQSPGYPWTTQGRSRRSLF 2023 Query 132 NKQTRDTKEMQKLLDTY--GINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRM 189 ++ E+QK +D+ G + +++KDELR K GK+R++EA+ + V R Sbjct 2024 DEDGNPVPELQKAIDSVWDGGSYIYQSFLKDELRPTAKARAGKTRIVEAAPIQAIVVGRR 2083 Query 190 AFGNLYAAFHKNPGVITGSAVGCDPDLFWSKI--PVLMEEKLFAFDYTGYDASLSPAWFE 247 G+L NP + GSAVGC+PD+ W++I + +++ DY+ +DA++ Sbjct 2084 LLGSLINHLQGNP-LQYGSAVGCNPDIHWTQIFHSLTPFSNVWSIDYSCFDATIPSVLLS 2142 Query 248 AL--KMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLII 305 A+ ++ G +DY+ Y S+H+Y + Y + GG PSGC GTSI N++ NN+ I Sbjct 2143 AIASRIASRSDQPGRVLDYLSYTTTSYHVYDSLWYTMVGGNPSGCVGTSILNTIANNIAI 2202 Query 306 RTLLLKTYKGIDLDHLKMIAYGDDVIAS-----YPHEVDASLLAQSGKDYGLTMTPADKS 360 + ++ K D + YGDD+I +P E+ A K +TPADK+ Sbjct 2203 ISAMMYCNKFDPRDPPVLYCYGDDLIWGSNQDFHPRELQAFY----QKFTNFVVTPADKA 2258 Query 361 ATF-ETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 + F ++ + ++TFLKR+F D+ +P LIHPVM + SI W + ++ +RSL Sbjct 2259 SDFPDSSSIYDITFLKRYFVPDDIHPHLIHPVMDEATLTNSIMWLRGGE-FEEVLRSLET 2317 Query 420 LAWHNGEEEYNKFLAKIRSV--PIGRALLLPEYSTLYRRWLDS 460 LA+H+G Y+ + KI++ G YS L R W+ + Sbjct 2318 LAFHSGPNNYSTWCEKIKAKIRENGCDATFTPYSVLQRGWVST 2360 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A5)] Sequence ID: P03307.2 Length: 2332 Range 1: 1880 to 2327 Score:228 bits(580), Expect:4e-64, Method:Compositional matrix adjust., Identities:149/459(32%), Positives:245/459(53%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++E D+ + + Sbjct 1880 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSEEDKALFRRC 1939 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1940 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1999 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 2000 TVGPEVEAALKLMEKREYKFVCQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2059 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2060 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2116 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK + V+GGMPSGCS TSI N+++NN+ Sbjct 2117 IMFEEVFRTDFGFHPNAEWILKTLVNTEHAYENKRHTVEGGMPSGCSATSIINTILNNIY 2176 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2177 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2236 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2237 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2293 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2294 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2327 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus Asia 1] Sequence ID: A2I7M2.1 Length: 2329 Range 1: 1877 to 2324 Score:227 bits(579), Expect:6e-64, Method:Compositional matrix adjust., Identities:149/459(32%), Positives:244/459(53%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++E D+ + + Sbjct 1877 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSEEDKALFRRC 1936 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1937 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1996 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 1997 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2056 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2057 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2113 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2114 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRIVVEGGMPSGCSATSIINTILNNIY 2173 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2174 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2233 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2234 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2290 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2291 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2324 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A24 Cruzeiro)] Sequence ID: P03309.2 Length: 2333 Range 1: 1881 to 2328 Score:227 bits(579), Expect:6e-64, Method:Compositional matrix adjust., Identities:149/459(32%), Positives:244/459(53%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++E D+ + + Sbjct 1881 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNDGVVLDEVIFSKHKGDTKMSEEDKALFRRC 1940 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1941 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 2000 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 2001 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2060 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2061 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2117 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2118 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2177 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2178 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2237 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2238 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2294 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2295 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2328 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C3 Indaial)] Sequence ID: P03310.2 Length: 2328 Range 1: 1876 to 2323 Score:227 bits(578), Expect:7e-64, Method:Compositional matrix adjust., Identities:149/459(32%), Positives:244/459(53%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++E D+ + + Sbjct 1876 KTKLAPTVAHGVFNPDFGPAALSNRDPRLNEGVVLDEVIFSKHKGDTKMSEEDKALFRRC 1935 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1936 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1995 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 1996 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2055 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2056 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2112 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2113 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2172 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2173 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSIGQTITPADKSDKGF 2232 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2233 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2289 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2290 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2323 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus C1] Sequence ID: P15072.2 Length: 2327 Range 1: 1875 to 2322 Score:227 bits(578), Expect:8e-64, Method:Compositional matrix adjust., Identities:149/459(32%), Positives:244/459(53%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++E D+ + + Sbjct 1875 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSEEDKALFRRC 1934 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1935 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1994 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 1995 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2054 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2055 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2111 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2112 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2171 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2172 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2231 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2232 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2288 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2289 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2322 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus O] Sequence ID: P03305.1 Length: 2332 Range 1: 1880 to 2327 Score:226 bits(575), Expect:2e-63, Method:Compositional matrix adjust., Identities:149/459(32%), Positives:243/459(52%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++E D+ + + Sbjct 1880 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSEEDKALFRRC 1939 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1940 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1999 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 2000 TVGPEVEAALKLMEKREYKFVCQTFLKDEIRPLEKVRAGKTRIVDVLPVEHILYTRMMIG 2059 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2060 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2116 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V GGMPSGCS TSI N+++NN+ Sbjct 2117 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVGGGMPSGCSATSIINTILNNIY 2176 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2177 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2236 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2237 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2293 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2294 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2327 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A12)] Sequence ID: P03308.2 Length: 2333 Range 1: 1881 to 2328 Score:226 bits(575), Expect:2e-63, Method:Compositional matrix adjust., Identities:148/459(32%), Positives:243/459(52%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++ D+ + + Sbjct 1881 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRC 1940 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1941 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMESDTAPGLPWAFQGKRRGALIDFENG 2000 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 2001 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2060 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2061 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2117 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2118 IMFEEVFRTDFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2177 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2178 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2237 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2238 VLGHSITDVTFLKRHFHIDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLTSVAGLA 2294 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2295 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2328 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain C1-Santa Pau)] Sequence ID: P03311.2 Length: 2327 Range 1: 1875 to 2322 Score:225 bits(573), Expect:4e-63, Method:Compositional matrix adjust., Identities:148/459(32%), Positives:243/459(52%), Gaps:31/459(6%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ H VF PA L+ DPRL +E IFSK+ G+ K++ D+ + + Sbjct 1875 KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRC 1934 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1935 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1994 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + RM G Sbjct 1995 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIG 2054 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2055 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2111 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2112 IMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2171 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFE 364 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2172 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2231 Query 365 TV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCLLA 421 + + +VTFLKR F D F PVM K + + + + R T Q+ + S+ LA Sbjct 2232 VLGHSITDVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAGLA 2288 Query 422 WHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 H+G +EY + P +P Y +LY RW+++ Sbjct 2289 VHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2322 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protease; Short=Lpro; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=P52; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Protein 3B-1; Short=P3B-1; AltName: Full=Genome-linked protein VPg1; Contains: RecName: Full=Protein 3B-2; Short=P3B-2; AltName: Full=Genome-linked protein VPg2; Contains: RecName: Full=Protein 3B-3; Short=P3B-3; AltName: Full=Genome-linked protein VPg3; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; AltName: Full=Protease P20B; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL; AltName: Full=P56A [Foot-and-mouth disease virus (strain A10-61)] Sequence ID: P03306.2 Length: 2332 Range 1: 1880 to 2327 Score:223 bits(569), Expect:1e-62, Method:Compositional matrix adjust., Identities:148/461(32%), Positives:246/461(53%), Gaps:35/461(7%) Query 22 KTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTD--FEEAIFSKYVGN-KITEVDEYM-KEA 77 KTKL P+ + VF PA L+ DPRL ++ IFSK+ G+ K+TE D+ + + Sbjct 1880 KTKLAPTVAYGVFNPEFGPAALSNKDPRLNEGVVLDDVIFSKHKGDAKMTEEDKALFRRC 1939 Query 78 VDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTR 136 YA +L S L + + +A+ G DGL+A++ T+ G P+ GK++ +++ + Sbjct 1940 AADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENG 1999 Query 137 ----DTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFG 192 + + KL++ T++KDE+R KV GK+R+++ + + +M G Sbjct 2000 TVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTKMMIG 2059 Query 193 NLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE--KLFAFDYTGYDASLSPAWFEALK 250 A H N G GSAVGC+PD+ W + + ++ DY+ +DA+ +A+ Sbjct 2060 RFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCS---DAMN 2116 Query 251 MVLEKI-----GFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLI 304 ++ E++ GF ++I L ++ H Y+NK V+GGMPSGCS TSI N+++NN+ Sbjct 2117 IMFEEVFRTDFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIY 2176 Query 305 IRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKS---- 360 + L + Y+G++LD MI+YGDD++ + +++D L K G T+TPADKS Sbjct 2177 VLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGF 2236 Query 361 ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNT-QDHVRSLCL 419 +++T +VTFLKR F D F PVM K + + + + R T Q+ + S+ Sbjct 2237 VLGQSIT--DVTFLKRHFHMDYGTGFY-KPVMASKTLEAILSFAR--RGTIQEKLISVAG 2291 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLDS 460 LA H+G +EY + P +P Y +LY RW+++ Sbjct 2292 LAVHSGPDEYRRLFE-----PFQGLFEIPSYRSLYLRWVNA 2327 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=Protein 3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; AltName: Full=Picornain 3C; Short=P3C; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Salivirus NG-J1] Sequence ID: C5MSH2.2 Length: 2374 Range 1: 1925 to 2364 Score:223 bits(568), Expect:2e-62, Method:Composition-based stats., Identities:147/450(33%), Positives:237/450(52%), Gaps:26/450(5%) Query 27 PSAFHYVFEGVKEPAVLTKNDPRLK--TDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQ 84 P AF F KEPA L++ DPRL TD + +K+ I M+EA D Y Q Sbjct 1925 PPAFG-AFPITKEPAALSRKDPRLPEGTDLDAITLAKHDKGDIATPWPCMEEAADWYFSQ 1983 Query 85 LMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKL 144 L N + EDA+ G D ++A+DLS S GYP+ G+ +R + ++ E+Q+ Sbjct 1984 LPD---NLPVLSQEDAIRGLDHMDAIDLSQSPGYPWTTQGRSRRSLFDEDGNPLPELQEA 2040 Query 145 LDTY--GINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNP 202 +D+ G + +++KDELR K GK+R++EA+ + V R G+L NP Sbjct 2041 IDSVWDGGSYIYQSFLKDELRPTAKARAGKTRIVEAAPIQAIVVGRRLLGSLINHLQGNP 2100 Query 203 GVITGSAVGCDPDLFWSKI--PVLMEEKLFAFDYTGYDASLSPAWFEAL--KMVLEKIGF 258 + GSAVGC+PD+ W++I + +++ DY+ +DA++ A+ ++ Sbjct 2101 -LQHGSAVGCNPDIHWTQIFHSLTSFSNVWSIDYSCFDATIPSVLLSAIASRIAARSDQP 2159 Query 259 GDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDL 318 G +DY+ Y S+H+Y + Y + GG PSGC GTSI N++ NN+ + + ++ K Sbjct 2160 GRVLDYLSYTTTSYHVYDSLWYTMIGGNPSGCVGTSILNTIANNIAVISAMMYCNKFDPR 2219 Query 319 DHLKMIAYGDDVIAS-----YPHEVDASLLAQSGKDYGLTMTPADKSATF-ETVTWENVT 372 D + YGDD+I +P E+ A K +TPADK++ F ++ + ++T Sbjct 2220 DPPVLYCYGDDLIWGSNQDFHPRELQAFY----QKFTNFVVTPADKASDFPDSSSIFDIT 2275 Query 373 FLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKF 432 FLKR+F D+ +P LIHPVM + + SI W + ++ +RSL LA+H+G + Y+ + Sbjct 2276 FLKRYFVPDDIHPHLIHPVMDEQTLTNSIMWLRGGE-FEEVLRSLETLAFHSGPKNYSAW 2334 Query 433 LAKIRSV--PIGRALLLPEYSTLYRRWLDS 460 KI++ G YS L R W+ + Sbjct 2335 CEKIKAKIRENGCDATFTPYSVLQRGWVST 2364 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=Protein 3D; Short=3D [Cosavirus A isolate Human/Pakistan/0553/-] Sequence ID: B8XTP8.1 Length: 2124 Range 1: 1671 to 2120 Score:218 bits(556), Expect:5e-61, Method:Compositional matrix adjust., Identities:146/460(32%), Positives:228/460(49%), Gaps:25/460(5%) Query 15 PIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLK--TDFEEAIFSKYVGNKITEVDE 72 P ++ P +KL+ + Y PA L++ DPRL + +E IFSK+ N + E Sbjct 1671 PRVHVPRTSKLKRTNATYPATEKYGPAALSRYDPRLNEGVNLDEVIFSKHTQNTLVEKGS 1730 Query 73 YMKEAVDH----YAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKR 128 + A+D Y + D + + +EDA+ G GL+ LD +T++G PY ++ Sbjct 1731 TFRSALDMAAEIYGEKFRGNDFS--PLSVEDAILGIPGLDRLDPNTASGLPYTKTRRQMI 1788 Query 129 DILNKQTRDTKEMQKLLDTYGINLP----LVTYVKDELRSKTKVEQGKSRLIEASSLNDS 184 D Q D +L P T++KDE+R KV+ GK+R+I+ L+ Sbjct 1789 DFNTGQILDDTLKCRLGQWLAGRPPQEVHYQTFLKDEIRPIEKVKAGKTRIIDVPPLDHV 1848 Query 185 VAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLME--EKLFAFDYTGYDASLS 242 +A RM FG A +H N G TGSA+GCDPD+ W+ + L+ FDY+ +DAS S Sbjct 1849 IAFRMLFGRFIAHYHLNFGFKTGSAIGCDPDVAWASFGFELSGFPYLYDFDYSNFDASHS 1908 Query 243 PAWFEAL--KMVLEKIGFGDRVDYI-DYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSM 299 + FE L K ++GF R + L S H Y+NK + GG+PSG +GTS+ N++ Sbjct 1909 TSIFEILEQKFFSPELGFDPRCSLLLKSLAVSTHCYENKRLQIAGGLPSGTAGTSVLNTV 1968 Query 300 INNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADK 359 INN+I L TY + D + M+AYGDD++ + E+D ++ G +TPADK Sbjct 1969 INNIIFHGALYHTYTNFERDDISMLAYGDDIVVASKFELDLVMVKAFMNRIGYKITPADK 2028 Query 360 SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPRNTQDHVRSLCL 419 S F +++ FLKR F K + PVM + + + W K P + ++S+ Sbjct 2029 SDEFRPKCMDDICFLKRRF---VKVAGVWAPVMETENLEAMLSWYK-PGTLNEKLQSVSR 2084 Query 420 LAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWLD 459 LA +G + Y+ I + + L+ WL+ Sbjct 2085 LAHFSGRDVYDHLFKPF----IRDGFDVTPWKQLHLEWLN 2120 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Norway/NOR-21/1998] Sequence ID: Q9DWR1.4 Length: 2228 Range 1: 1751 to 2198 Score:156 bits(394), Expect:1e-39, Method:Compositional matrix adjust., Identities:133/459(29%), Positives:217/459(47%), Gaps:47/459(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PAV+ + R + D + SKY + E D+Y Sbjct 1751 MNVVSKTLFRKSPIHHHIDKNMINFPAVMPFS--RAEIDPMAVMLSKYSLPIVDEPDDYK 1808 Query 75 KEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL--- 131 +V L + + + +E A+ G G++A+++ +S GYPYV KRD++ Sbjct 1809 DVSVFFQNKILGKSPLVDDFLDIEMAITGAPGIDAINMDSSPGYPYVQEKLTKRDLIWLD 1868 Query 132 -------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEA 178 + +T M+ D +++ T KDELR KV + K+R I++ Sbjct 1869 DNGMFLGLHPRLAQRILFNTTMMENCSD---LDVVFTTCPKDELRPLDKVLESKTRAIDS 1925 Query 179 SSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDYT 235 L+ ++ RM +G + FH NPG TG A+G DPD W K + + D++ Sbjct 1926 CPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDQLFKTMIRFGDVGLDLDFS 1985 Query 236 GYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGC 290 +DASLSP EA +++ E G FG+ + I+ + +S HL N Y V G MPSG Sbjct 1986 AFDASLSPFMIREAGRILTEMSGAPVHFGEAL--INTIIYSKHLLYNCCYHVCGSMPSGS 2043 Query 291 SGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQSG 347 T++ NS+INN+ + + K +K + D ++++ YGDDV+ + +V L G Sbjct 2044 PCTALLNSIINNVNLYYVFSKIFKKSPVFFCDAVRILCYGDDVLIVFSRQVQIDNLDSIG 2103 Query 348 -------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHES 400 K G+T T ADKS + +TFLKR F E I P + K I Sbjct 2104 QRIVDEFKKLGMTATSADKSVP-QLKPVSELTFLKRSFNLVEDR---IRPAIAEKTIWSL 2159 Query 401 IRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 + W ++ + ++ + A+ +G E Y +F ++S Sbjct 2160 VAWQRNNAEFEQNLENAQWFAFMHGYEFYQQFYHFVQSC 2198 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/France/CF-53/1979] Sequence ID: Q5Y944.1 Length: 2225 Range 1: 1748 to 2195 Score:153 bits(386), Expect:1e-38, Method:Compositional matrix adjust., Identities:128/460(28%), Positives:215/460(46%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT + S H+ + + PA + + R + D + SKY + E + Y Sbjct 1748 MNVVSKTLFKKSPIHHHIDKDMINFPAAMPFS--RAEIDPMAVMLSKYSLPMVEEPEGY- 1804 Query 75 KEAVDHYAGQLMSLDINTEQMC-LEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 K+ + ++M I + L+ A+ GT G++A+++ +S G+PYV KRD++ Sbjct 1805 KDVSIFFQNKIMGKSILVDDFLDLDMAITGTPGIDAINMDSSPGFPYVQEKLTKRDLIWL 1864 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1865 HENGLLLGIHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLDKVLESKTRAID 1921 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1922 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDKQWDELFKTMIRFGDVGLDLDF 1981 Query 235 TGYDASLSPAWFEALKMVLEKIG-----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP ++ +I FG + I+ + +S HL N Y V G MPSG Sbjct 1982 SAFDASLSPFMIREAGRIMSEISGTPSHFGTAL--INTIIYSKHLLYNCCYHVYGSMPSG 2039 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K ++ + ++++ YGDDV+ + ++ L Q Sbjct 2040 SPCTALLNSIINNINLYYVFAKIFRKSPVFFSQAVRILCYGDDVLVVFSRDIQIDNLDQI 2099 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K+ G+T T ADK+ + +TFLKR F E I P + K I Sbjct 2100 GQKIVHEFKELGMTATSADKTVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 2155 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 + W + + ++ + A+ +G E Y KF ++S Sbjct 2156 LVAWQRSNAEFEQNLENAQWFAFMHGFEFYQKFYYFVQSC 2195 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Japan/HAJ85-1/1985] Sequence ID: A5LGW7.1 Length: 2228 Range 1: 1751 to 2198 Score:151 bits(382), Expect:4e-38, Method:Compositional matrix adjust., Identities:131/460(28%), Positives:218/460(47%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT + S H+ + + PAV+ + R + D + SKY + E ++Y Sbjct 1751 MNVVSKTLFKKSPIHHHIDKNMINFPAVMPFS--RAEIDPMAVMLSKYSLPIVDEPEDYK 1808 Query 75 KEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL--- 131 +V L + + + +E A+ G G++A+++ +S GYPYV KRD++ Sbjct 1809 DVSVFFQNKILGKSPLVDDFLDIEMAITGAPGIDAINMDSSPGYPYVQEKLTKRDLIWLD 1868 Query 132 -------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEA 178 + +T M+ D +++ T KDELR KV + K+R I++ Sbjct 1869 DNGMFLGVHPRLAQRILFNTTMMENCSD---LDVVFTTCPKDELRPLDKVLESKTRAIDS 1925 Query 179 SSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDYT 235 L+ ++ RM +G + FH NPG TG A+G DPD W K + + D++ Sbjct 1926 CPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDQLFKTMIRFGDVGLDLDFS 1985 Query 236 GYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGC 290 +DASLSP EA +++ E G FG+ + I+ + +S HL N Y V G MPSG Sbjct 1986 AFDASLSPFMIREAGRILTEMSGAPNHFGEAL--INTIIYSKHLLYNCCYHVYGSMPSGS 2043 Query 291 SGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQSG 347 T++ NS+INN+ + + K +K + D ++++ YGDDV+ + +V L G Sbjct 2044 PCTALLNSIINNVNLYYVFSKIFKKSPVFFCDAIRILCYGDDVLIVFSRQVQFDNLDSIG 2103 Query 348 -------KDYGLTMTPADKSATFETVTWENVTFLKRFFR-ADEKYPFLIHPVMPMKEIHE 399 + G+T T ADKS + +TFLKR F D++ I P + K I Sbjct 2104 QRIVDEFRKLGMTATSADKSVP-QLKPVSELTFLKRSFNLVDDR----IRPAIAEKTIWS 2158 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 + W + + ++ + A+ +G E Y F ++S Sbjct 2159 LVAWQRSNAEFEQNLENAQWFAFMHGYEFYQDFYHFVQSC 2198 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/China/H2/1982] Sequence ID: A3FMB2.1 Length: 2227 Range 1: 1750 to 2197 Score:148 bits(374), Expect:5e-37, Method:Compositional matrix adjust., Identities:133/460(29%), Positives:217/460(47%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PAV+ + + + D + SKY + E ++Y Sbjct 1750 MNVVSKTLFRKSPIHHHIDKTMINFPAVMPFS--KAEVDPMAVMLSKYSLPIVEEPEDY- 1806 Query 75 KEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 KEA Y +++ + + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1807 KEASIFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQEKLTKRDLIWL 1866 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1867 DENGLLLGVHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLEKVLESKTRAID 1923 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1924 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDELFKTMIRFGDVGLDLDF 1983 Query 235 TGYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP EA +++ E G FG + I+ + +S HL N Y V G MPSG Sbjct 1984 SAFDASLSPFMIREAGRIMSELSGTPSHFGTAL--INTIIYSKHLLYNCCYHVCGSMPSG 2041 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K + + L+++ YGDDV+ + +V L Sbjct 2042 SPCTALLNSIINNINLYYVFSKIFGKSPVFFCQALRILCYGDDVLIVFSRDVQIDNLDLI 2101 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K G+T T ADK+ + +TFLKR F E I P + K I Sbjct 2102 GQKIVDEFKKLGMTATSADKNVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 2157 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 I W + + ++ + A+ +G E Y KF ++S Sbjct 2158 LIAWQRSNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSC 2197 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Sierra Leone/SLF88/1988] Sequence ID: Q8V0N6.1 Length: 2227 Range 1: 1750 to 2197 Score:147 bits(372), Expect:8e-37, Method:Compositional matrix adjust., Identities:125/460(27%), Positives:212/460(46%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PA + + R + D + SKY + E + Y Sbjct 1750 MNVVSKTLFRKSPIHHHIDKDMINFPAAMPFS--RAEIDPMAVMLSKYSLPMVEEPEGY- 1806 Query 75 KEAVDHYAGQLMSLDINTEQMC-LEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 K+ + ++M + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1807 KDVSVFFQNKVMGKSVLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQERLTKRDLIWL 1866 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1867 DENGLLLGIHPRLAQRILFNTVMMENCSD---LDVIFTTCPKDELRPLDKVLESKTRAID 1923 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1924 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDELFKTMIRFGDVGLDLDF 1983 Query 235 TGYDASLSPAWFEALKMVLEKIG-----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP ++ +I FG + I+ + +S HL N Y V G MPSG Sbjct 1984 SAFDASLSPFMIREAGRIMSEISGTPSHFGTAL--INTIIYSKHLLYNCCYHVYGSMPSG 2041 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K ++ + ++++ YGDDV+ + ++ L Q Sbjct 2042 SPCTALLNSIINNINLYYVFSKIFRKSPVFFSQAVRILCYGDDVLIVFSRDIQIDNLDQI 2101 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K G+T T ADK+ + +TFLKR F E + P + K I Sbjct 2102 GQKIVHEFKQLGMTATSADKTVP-QLKPVSELTFLKRSFNLVEDR---VRPAISEKTIWS 2157 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 + W + + ++ + A+ +G E Y KF ++S Sbjct 2158 LVAWQRSNAEFEQNLENAQWFAFMHGFEFYQKFYYFVQSC 2197 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A1; Short=P2A1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A2; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [parechovirus B1] Sequence ID: Q8JV21.1 Length: 2253 Range 1: 1796 to 2248 Score:146 bits(369), Expect:2e-36, Method:Compositional matrix adjust., Identities:134/464(29%), Positives:220/464(47%), Gaps:33/464(7%) Query 17 INAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAI---FSKYVGNKITEVDEY 73 I PSKT L PS + V EPAVL+ +D RL+ + +KY N E Sbjct 1796 IYLPSKTALNPSPLNGVVPVKMEPAVLSPHDTRLEVIMPSVVKTAAAKYRVNIFNPDFEI 1855 Query 74 MKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNK 133 + VD + + + + + A+ G L +LDLSTS G YV G KKRD+L+ Sbjct 1856 WERVVDELKSKFRTKLGIHKHVSFQKAVQGFSSLSSLDLSTSPGQKYVEKGMKKRDLLST 1915 Query 134 Q--------TRDTKEMQKLLDTYGINLP---LVTYVKDELRSKTKVEQGKSRLIEASSLN 182 + D K++ L Y P ++KDELR K K+ QGK+R IEA S++ Sbjct 1916 EPFWMHPQLEGDVKDI--LGAVYSGKKPHTFFAAHLKDELRKKEKIAQGKTRCIEACSID 1973 Query 183 DSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLS 242 +A R+ +LY A ++ P G AVG +P W + +++ + DY+ YD SLS Sbjct 1974 YVIAYRVVMSSLYEAIYQTPAQELGLAVGMNPWTDWDPMINVLQPYNYGLDYSSYDGSLS 2033 Query 243 PAWFEALKMVLEKIGFGDRVDYIDYLNH-----SHHLYKNKTYCVKGGMPSGCSGTSIFN 297 + ++ +E + + + H S HL ++ + V GGMPSG T++ N Sbjct 2034 E---QLMRYGVEILAYCHEQPEAVMILHEPVINSQHLVMDEIWHVNGGMPSGAPCTTVLN 2090 Query 298 SMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQS-GKDYGLTMTP 356 S+ N L+ L + + +D++ L I YGDDVI S +DA L QS +++G+ +T Sbjct 2091 SICNLLVCTYLAYE--QSLDIEVLP-IVYGDDVIFSVSSPLDAEYLVQSAAQNFGMEVTS 2147 Query 357 ADKSATFETVTWENVTFLKRFFRADEKYPFLIHPV--MPMKEIHESIRWTKDPRNTQDHV 414 +DKS + + + + FLK R + +P + V + + + + I W K+ + + Sbjct 2148 SDKSGPPKLLKMDEIEFLK---RTTKFFPGSTYKVGALSLDTMEQHIMWMKNLETFPEQL 2204 Query 415 RSLCLLAWHNGEEEYNKFLAKIRSVPIGRALLLPEYSTLYRRWL 458 S +G+E Y+ + + + + + +Y R L Sbjct 2205 VSFENELVLHGKEIYDDYKNRFNPILNQWRVCMQDYEVALHRML 2248 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Arizona/HAS-15/1979] Sequence ID: Q05794.2 Length: 2052 Range 1: 1584 to 2031 Score:146 bits(368), Expect:3e-36, Method:Compositional matrix adjust., Identities:132/460(29%), Positives:216/460(46%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PA + + + + D + SKY + E ++Y Sbjct 1584 MNVVSKTLFRKSPIHHHIDKTMINFPAAMPFS--KAEIDPMAMMLSKYSLPIVEEPEDY- 1640 Query 75 KEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 KEA Y +++ + + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1641 KEASVFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQEKLTKRDLIWL 1700 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1701 DENGLLLGVHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLEKVLESKTRAID 1757 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1758 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDELFKTMIRFGDVGLDLDF 1817 Query 235 TGYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP EA +++ E G FG + I+ + +S HL N Y V G MPSG Sbjct 1818 SAFDASLSPFMIREAGRIMSELSGTPSHFGTAL--INTIIYSKHLLYNCCYHVCGSMPSG 1875 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K + + L+++ YGDDV+ + +V L Sbjct 1876 SPCTALLNSIINNINLYYVFSKIFGKSPVFFCQALRILCYGDDVLIVFSRDVQIDNLDLI 1935 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K G+T T ADK+ + +TFLKR F E I P + K I Sbjct 1936 GQKIVDEFKKLGMTATSADKNVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 1991 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 I W + + ++ + A+ +G E Y KF ++S Sbjct 1992 LIAWQRSNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSC 2031 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Northern Africa/MBB/1978] Sequence ID: P13901.1 Length: 2227 Range 1: 1750 to 2197 Score:145 bits(367), Expect:4e-36, Method:Compositional matrix adjust., Identities:132/460(29%), Positives:216/460(46%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PA + + + + D + SKY + E ++Y Sbjct 1750 MNVVSKTLFRKSPIHHHIDKTMINFPAAMPFS--KAEIDPMAMMLSKYSLPIVEEPEDY- 1806 Query 75 KEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 KEA Y +++ + + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1807 KEASIFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQERLTKRDLIWL 1866 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1867 DENGLLLGVHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLEKVLESKTRAID 1923 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1924 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDCQWDELFKTMIRFGDVGLDLDF 1983 Query 235 TGYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP EA +++ E G FG + ++ + +S HL N Y V G MPSG Sbjct 1984 SAFDASLSPFMIREAGRIMSELSGTPSHFGTAL--MNTIIYSKHLLYNCCYHVCGSMPSG 2041 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K + + LK++ YGDDV+ + +V L Sbjct 2042 SPCTALLNSIINNVNLYYVFSKIFGKSPVFFCQALKILCYGDDVLIVFSRDVQIDNLDLI 2101 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K G+T T ADK+ + +TFLKR F E I P + K I Sbjct 2102 GQKIVDEFKKLGMTATSADKNVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 2157 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 I W + + ++ + A+ +G E Y KF ++S Sbjct 2158 LIAWQRSNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSC 2197 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VP1-pX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Australia/HM175/1976] Sequence ID: P08617.1 Length: 2227 Range 1: 1750 to 2197 Score:145 bits(367), Expect:4e-36, Method:Compositional matrix adjust., Identities:133/460(29%), Positives:216/460(46%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S ++ + + PA + + + + D + SKY + E ++Y Sbjct 1750 MNVVSKTLFRKSPIYHHIDKTMINFPAAMPFS--KAEIDPMAVMLSKYSLPIVEEPEDY- 1806 Query 75 KEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 KEA Y +++ + + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1807 KEASIFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQEKLTKRDLIWL 1866 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1867 DENGLLLGVHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLEKVLESKTRAID 1923 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ S+ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1924 ACPLDYSILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDELFKTMIRFGDVGLDLDF 1983 Query 235 TGYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP EA +++ E G FG + I+ + +S HL N Y V G MPSG Sbjct 1984 SAFDASLSPFMIREAGRIMSELSGTPSHFGTAL--INTIIYSKHLLYNCCYHVCGSMPSG 2041 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K + + LK++ YGDDV+ + +V L Sbjct 2042 SPCTALLNSIINNVNLYYVFSKIFGKSPVFFCQALKILCYGDDVLIVFSRDVQIDNLDLI 2101 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K G+T T ADK+ + +TFLKR F E I P + K I Sbjct 2102 GQKIVDEFKKLGMTATSADKNVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 2157 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 I W + + ++ + A+ +G E Y KF ++S Sbjct 2158 LIAWQRSNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSC 2197 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Germany/GBM/1976] Sequence ID: Q67825.1 Length: 2227 Range 1: 1750 to 2197 Score:145 bits(366), Expect:5e-36, Method:Compositional matrix adjust., Identities:133/460(29%), Positives:218/460(47%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PA L + + + D + SKY + E ++Y Sbjct 1750 MNVVSKTLFRKSPIHHHIDKTMINFPAALPFS--KAEIDPMAIMLSKYSLPIVEEPEDY- 1806 Query 75 KEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 KEA Y +++ + + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1807 KEASVFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQEKLTKRDLIWL 1866 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1867 DENGLLLGVHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLEKVLESKTRAID 1923 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1924 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDELFKTMIRFGDVGLDLDF 1983 Query 235 TGYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP EA +++ E G FG + I+ + +S HL N Y V G MPSG Sbjct 1984 SAFDASLSPFMIREAGRIMSELSGTPSHFGTAL--INTIIYSKHLLYNCCYHVYGSMPSG 2041 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEV---DASLL 343 T++ NS+INN+ + + K + + L+++ YGDDV+ + +V + L+ Sbjct 2042 SPCTALLNSIINNINLYYVFSKIFGKSPVFFCQALRILCYGDDVLIVFSRDVQIDNLDLI 2101 Query 344 AQSGKD----YGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 Q D G+T T ADK+ + +TFLKR F E I P + K I Sbjct 2102 GQKIVDEFRKLGMTATSADKNVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 2157 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 I W + + ++ + A+ +G E Y KF ++S Sbjct 2158 LIAWQRGNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSC 2197 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Protein VP1-2A; AltName: Full=VPX; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Assembly signal 2A; AltName: Full=pX; Contains: RecName: Full=Protein 2BC; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3ABCD; Short=P3; Contains: RecName: Full=Protein 3ABC; Contains: RecName: Full=Protein 3AB; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protein 3CD; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Human hepatitis A virus Hu/Los Angelos/LA/1975] Sequence ID: P06441.1 Length: 2227 Range 1: 1750 to 2197 Score:144 bits(364), Expect:9e-36, Method:Compositional matrix adjust., Identities:131/460(28%), Positives:216/460(46%), Gaps:49/460(10%) Query 17 INAPSKTKLEPSAFHYVFEG--VKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYM 74 +N SKT S H+ + + PA + + + + D + SKY + E ++Y Sbjct 1750 MNVVSKTLFRKSPIHHHIDKTMINFPAAMPFS--KAEIDPMAMMLSKYSLPIVEEPEDY- 1806 Query 75 KEAVDHYAGQLMS-LDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDIL-- 131 KEA Y +++ + + + L+ A+ G G++A+++ +S G+PYV KRD++ Sbjct 1807 KEASVFYQNKIVGKTQLVDDFLDLDMAITGAPGIDAINMDSSPGFPYVQEKLTKRDLIWL 1866 Query 132 --------------NKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIE 177 + +T M+ D +++ T KDELR KV + K+R I+ Sbjct 1867 DENGLLLGVHPRLAQRILFNTVMMENCSD---LDVVFTTCPKDELRPLEKVLESKTRAID 1923 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWS---KIPVLMEEKLFAFDY 234 A L+ ++ RM +G + FH NPG TG A+G DPD W K + + D+ Sbjct 1924 ACPLDYTILCRMYWGPAISYFHLNPGFHTGVAIGIDPDRQWDELFKTMIRFGDVGLDLDF 1983 Query 235 TGYDASLSPAWF-EALKMVLEKIG----FGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSG 289 + +DASLSP EA +++ E G FG + I+ + +S HL N Y V G MPSG Sbjct 1984 SAFDASLSPFMIREAGRIMSELSGTPSHFGTAL--INTIIYSKHLLYNCCYHVCGSMPSG 2041 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL---DHLKMIAYGDDVIASYPHEVDASLLAQS 346 T++ NS+INN+ + + K + + L+++ YGDDV+ + +V L Sbjct 2042 SPCTALLNSIINNINLYYVFSKIFGKSPVFFCQALRILCYGDDVLIVFSRDVQIDNLDLI 2101 Query 347 G-------KDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHE 399 G K G+T T ADK+ + +TFLKR F E I P + K I Sbjct 2102 GQKIVDEFKKLGMTATSADKNVP-QLKPVSELTFLKRSFNLVEDR---IRPAISEKTIWS 2157 Query 400 SIRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSV 439 + W + + ++ + A+ +G E Y KF ++S Sbjct 2158 LMAWQRSNAEFEQNLENAQWFAFMHGYEFYQKFYYFVQSC 2197 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Echovirus 22 (strain Harris)] Sequence ID: Q66578.1 Length: 2180 Range 1: 1727 to 2150 Score:125 bits(313), Expect:3e-29, Method:Compositional matrix adjust., Identities:122/440(28%), Positives:203/440(46%), Gaps:43/440(9%) Query 21 SKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAI---FSKYVGNKI---TEVDEYM 74 +KT++ S + E PAVL+K+D RL+ E I SKY NK E+ + + Sbjct 1727 TKTQIHKSPVYGAVEVKMGPAVLSKSDTRLEEPVECLIKKSASKYRVNKFQVNNELWQGV 1786 Query 75 KEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRD----- 129 K V ++ ++ + ++ A+ GT + ++DLSTSAGY +V G KK+D Sbjct 1787 KACVKSKFREIFGMNGIVD---MKTAILGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLE 1843 Query 130 ------ILNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLND 183 +L + +D + LL I T +KDELR K+ GK+R IEA ++ Sbjct 1844 PFSVAPLLERLVQD--KFHNLLKGNQITTTFNTCLKDELRKLDKIASGKTRCIEACEVDY 1901 Query 184 SVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSP 243 + RM +Y ++ P +G AVG +P W + + + + DY+ YD SLS Sbjct 1902 CIVYRMIMMEIYDKIYQTPCYYSGLAVGINPYKDWHFMINALNDYNYEMDYSQYDGSLSS 1961 Query 244 A-WFEALKMVLEKIGFGDRVDYIDYLNH----SHHLYKNKTYCVKGGMPSGCSGTSIFNS 298 +EA++++ D D + L+ S H+ N+ + + GGMPSG T++ NS Sbjct 1962 MLLWEAVEVLAY---CHDSPDLVMQLHKPVIDSDHVVFNERWLIHGGMPSGSPCTTVLNS 2018 Query 299 MINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKD-YGLTMTPA 357 + N ++ GID I YGDDVI S E++ L D +G +T + Sbjct 2019 LCNLMMCIYTTNLISPGID---CLPIVYGDDVILSLDKEIEPEKLQSIMADSFGAEVTGS 2075 Query 358 DKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKD----PRNTQDH 413 K V FLKR + F++ + + + + + W K+ + Q + Sbjct 2076 RKDEPPSLKPRMEVEFLKRKPGYFPESTFIVGK-LDTENMIQHLMWMKNFSTFKQQLQSY 2134 Query 414 VRSLCLLAWHNGEEEYNKFL 433 + LCL +G++ Y ++ Sbjct 2135 LMELCL----HGKDTYQHYI 2150 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [Echovirus 23 strain Williamson] Sequence ID: O73556.1 Length: 2179 Range 1: 1726 to 2149 Score:122 bits(307), Expect:2e-28, Method:Compositional matrix adjust., Identities:119/440(27%), Positives:200/440(45%), Gaps:43/440(9%) Query 21 SKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAI---FSKYVGNKI---TEVDEYM 74 +K+++ S + E PAVL+K+D RL+ + + SKY NK E+ + + Sbjct 1726 TKSQIHKSPVYGAVEVKMGPAVLSKSDTRLEEPVDCLVKKSASKYRVNKFQVNNELWQGV 1785 Query 75 KEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQ 134 K V ++ ++ + ++ A+ GT + ++DLSTSAGY +V G KK+D++ + Sbjct 1786 KACVKSKFREIFGVNGIVD---MKTAILGTSHVNSMDLSTSAGYSFVKSGYKKKDLICLE 1842 Query 135 TRDTKEM---------QKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSV 185 M LL I T +KDELR K+ GK+R IEA ++ + Sbjct 1843 PFSVSPMLEKLVQEKFHNLLKGNQITTIFNTCLKDELRKLDKIATGKTRCIEACEIDYCI 1902 Query 186 AMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPAW 245 RM +Y ++ P +G AVG +P W + + + + DY+ YD SLS Sbjct 1903 VYRMIMMEIYDKIYQTPCYYSGLAVGINPYRDWHFMINALNDYNYEMDYSQYDGSLSSML 1962 Query 246 FEALKMVLEKIGFGDRVDYIDYLNH----SHHLYKNKTYCVKGGMPSGCSGTSIFNSMIN 301 VL D D + L+ S H+ N+ + + GGMPSG T++ NS+ N Sbjct 1963 LWEAVQVLAYC--HDSPDLVMQLHKPVIDSDHVVFNERWLIHGGMPSGSPCTTVLNSLCN 2020 Query 302 NLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVD----ASLLAQSGKDYGLTMTPA 357 ++ GID I YGDDVI S E++ S++A+S +G +T + Sbjct 2021 LMMCIYTTNLISPGID---CLPIVYGDDVILSLDKEIEPERLQSIMAES---FGAEVTGS 2074 Query 358 DKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKD----PRNTQDH 413 K V FLKR + F++ + + + + + W K+ + Q + Sbjct 2075 RKDEPPSLKPRMEVEFLKRKPGYFPESTFIVGK-LDTENMIQHLMWMKNFSTFKQQLQSY 2133 Query 414 VRSLCLLAWHNGEEEYNKFL 433 + LCL +G++ Y ++ Sbjct 2134 LMELCL----HGKDTYQHYV 2149 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Capsid protein VP0; AltName: Full=P1AB; AltName: Full=Virion protein 0; Contains: RecName: Full=Capsid protein VP3; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A H-NC; Short=P2A; AltName: Full=Protein 2A; Contains: RecName: Full=Protein 2B; Short=P2B; Contains: RecName: Full=Protein 2C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=Viral protein genome-linked; Short=VPg; AltName: Full=Protein 3B; Short=P3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; Contains: RecName: Full=RNA-directed RNA polymerase 3D-POL; Short=P3D-POL [HPeV 5 strain CT86-6760] Sequence ID: Q9YID8.1 Length: 2188 Range 1: 1735 to 2158 Score:120 bits(302), Expect:7e-28, Method:Compositional matrix adjust., Identities:120/440(27%), Positives:203/440(46%), Gaps:43/440(9%) Query 21 SKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAI---FSKYVGNKI---TEVDEYM 74 +K+++ S + E PAVL+K+D RL+ + I SKY NK E+ + + Sbjct 1735 TKSQIHKSPVYGAVEVKMGPAVLSKSDTRLEEPVDCLIKKSASKYRVNKFQVNNELWQGV 1794 Query 75 KEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDI---- 130 K V ++ ++ + ++ A+ GT + ++DLSTSAGY V G KK+D+ Sbjct 1795 KACVKSKFREIFGVNGIVD---MKTAILGTSHVNSMDLSTSAGYSLVKSGYKKKDLICLE 1851 Query 131 -------LNKQTRDTKEMQKLLDTYGINLPLVTYVKDELRSKTKVEQGKSRLIEASSLND 183 L K +D + LL I T +KDELR K+ GK+R IEA ++ Sbjct 1852 PFSVSPMLEKLVQD--KFHNLLKGNQITTIFNTCLKDELRKLDKIAAGKTRCIEACEVDY 1909 Query 184 SVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSP 243 + RM +Y ++ P +G AVG +P W + + + + DY+ YD SLS Sbjct 1910 CIVYRMIMMEIYDKIYQTPCYYSGLAVGINPYKDWHFMINALNDYNYEMDYSQYDGSLSS 1969 Query 244 A-WFEALKMVLEKIGFGDRVDYIDYLNH----SHHLYKNKTYCVKGGMPSGCSGTSIFNS 298 +EA++++ D D + L+ S H+ N+ + + GGMPSG T++ NS Sbjct 1970 MLLWEAVEVLAY---CHDSPDLVMQLHKPVIDSDHVVFNERWLIHGGMPSGSPCTTVLNS 2026 Query 299 MINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKD-YGLTMTPA 357 + N ++ G+D I YGDDVI S E++ L D +G +T + Sbjct 2027 LCNLMMCIYTTNLISPGVD---CLPIVYGDDVILSLDREIEPERLQSIMADSFGAEVTGS 2083 Query 358 DKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKD----PRNTQDH 413 K V FLKR + F++ + + + + + W K+ + Q + Sbjct 2084 RKDEPPSLKPRMEVEFLKRKPGYFPESTFIVGK-LDTENMIQHLMWMKNFSTFKQQLQSY 2142 Query 414 VRSLCLLAWHNGEEEYNKFL 433 + LCL +G++ Y +++ Sbjct 2143 LMELCL----HGKDIYQRYI 2158 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p5.6; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus strain Japanese F4] Sequence ID: P27408.2 Length: 1763 Range 1: 1264 to 1738 Score:92.0 bits(227), Expect:2e-18, Method:Compositional matrix adjust., Identities:133/496(27%), Positives:203/496(40%), Gaps:75/496(15%) Query 20 PSKTKLEPSAFHY--VFEGVKEPAVLTKNDPRLKTDFEEAIFS-------KYVGNKITEV 70 P T+L S H E +PA L DPR + + G + Sbjct 1264 PKGTRLHVSPAHVDDFEECSHQPASLGSGDPRCPKSLTAIVVDSLKPYCDRVEGPPHDVL 1323 Query 71 DEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDI 130 K +DH +G + ++I++E L L+ TS G PY+ G+KK + Sbjct 1324 HRVQKMLIDHLSG-FVPMNISSETSMLS-------AFHKLNHDTSCG-PYLG-GRKKDHM 1373 Query 131 LN----KQTRDTKEMQKLLDTYGINLP--LVTYVKDELRSKTKVEQGKSRLIEASSLNDS 184 +N KQ D + L T GI LP +KDELR KV++GK R+I + + Sbjct 1374 VNGEPDKQLLDLLSSKWKLATQGIALPHEYTIGLKDELRPIEKVQEGKRRMIWGCDVGVA 1433 Query 185 VAMRMAFGNLYAAFHKNP--GVITGSAVGCDPDLFWSKIPVLMEE-----KLFAFDYTGY 237 AF + A N G I VG + D + VL + K+FA DY+ + Sbjct 1434 TVCAAAFKGVSDAITANHQYGPI---QVGINMDS--PSVEVLYQRIKSAAKVFAVDYSKW 1488 Query 238 DASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHH-----LYKNKTYCVKGGMPSGCSG 292 D++ SP A +L F DR +D ++ ++ V G+PSG Sbjct 1489 DSTQSPRVSAASIDILRY--FSDRSPIVDSAANTLKSPPIAIFNGVAVKVASGLPSGMPL 1546 Query 293 TSIFNSMINNLIIRTLLLKTYKGIDL-------DHLKMIAYGDDVIASYPHEVDASLLAQ 345 TS+ NS+ + + + +L++ + + M+ YGDD + +P + AS+ Q Sbjct 1547 TSVINSLNHCMYVGCAILQSLEARQIPVTWNLFSSFDMMTYGDDGVYMFP-TMFASVSDQ 1605 Query 346 ---SGKDYGLTMTPADKS-ATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEI---- 397 + YGL T DKS E++ E+V FLKR + P I ++ I Sbjct 1606 IFGNLSAYGLKPTRVDKSVGAIESIDPESVVFLKRTI---TRTPNGIRGLLDRSSIIRQF 1662 Query 398 -----HESIRW-----TKDPRNTQDHVRSLCLLAWHNGEEEYNKFLA-KIRSVPI-GRAL 445 S W T DP + + + CL A +G E YNK L +R+V G L Sbjct 1663 FYIKGENSDDWKTPPKTIDPTSRGQQLWNACLYASQHGVEFYNKVLKLAMRAVEYEGLHL 1722 Query 446 LLPEYSTLYRRWLDSF 461 P YS+ + F Sbjct 1723 KPPSYSSALEHYNSQF 1738 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate Vt6)] Sequence ID: Q91PP5.1 Length: 3471 Range 1: 2908 to 3414 Score:85.5 bits(210), Expect:3e-16, Method:Compositional matrix adjust., Identities:121/510(24%), Positives:218/510(42%), Gaps:73/510(14%) Query 21 SKTKLEPSAFHYVFEGVK-EPAVLTKNDPRLK------TDFEEAI--FSKYV----GNKI 67 +KT + S H + +K EP+VL+ D RL ++A+ + Y+ +I Sbjct 2908 TKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWDPMKDAVKKYGSYILPFPTEEI 2967 Query 68 TEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYV------ 121 EV+ ++ + + ++N+ ++ + + + G+D +++ TS GYPY+ Sbjct 2968 QEVENFLIKKFRRKENSRRTRNVNSLEVGI-NGIDGSDFWSPIEMKTSPGYPYILKRPSG 3026 Query 122 AMGKK--------------KRDILNKQTRDTKEMQKLLDTYGINLPLVTY--VKDELRSK 165 A GKK K + + + + E K T G+ ++T +KDE R Sbjct 3027 AQGKKYLFEELEPYPSGRPKYAMKDPELIENYERIKEEVTSGVKPSIMTMECLKDERRKL 3086 Query 166 TKV-EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPD-LFWSKIP- 222 K+ E+ +R S ++ R FG+ +AA + S VG +P+ + WS + Sbjct 3087 AKIYEKPATRTFTILSPEVNILFRQYFGD-FAAMVMSTRREHFSQVGINPESMEWSDLIN 3145 Query 223 --VLMEEKLFAFDYTGYDASLSPAWFEALKMVLE------KIGFGDRVDYIDYLNHSHHL 274 + + K FA DY+ +D SPA + ++ V+ ++ R I + H + Sbjct 3146 SLLRVNTKGFAGDYSKFDGIGSPAIYHSIVNVVNAWYDDGEVNARARHSLISSIVHRDGI 3205 Query 275 YKNKTYCVKGGMPSGCSGTSIFNSMIN---------NLIIRTLLLKTYKGIDLD-HLKMI 324 + GMPSG + T IFNS +N + + +LL D D + K++ Sbjct 3206 CGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIV 3265 Query 325 AYGDDVIASYPHEV----DASLLAQSGKDYGLTMTPADKSATFETVTWENVT---FLKRF 377 AYGDD + S E + +A +G+T T DK+ + +E++T FLKR Sbjct 3266 AYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDGDKNPIHMSKPYEDITKMSFLKRG 3325 Query 378 FRADEKYPFLIHPVMPMKEIHESIRWTKDP----RNTQDHVRSLCLLAWHNGEEEYNKFL 433 F E FL + I E + W +D + ++ S A +G + ++ + Sbjct 3326 FERVESSGFLWKAPLDKTSIEERLNWIRDCPTPVEALEQNIESALHEAAIHGRDYFDDLV 3385 Query 434 AKIRSVPIGRALLLP---EYSTLYRRWLDS 460 ++ S + R +L P + RW S Sbjct 3386 QRLNSA-LKRVMLPPTDISFEECQARWWAS 3414 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Putative leader protein; Contains: RecName: Full=Capsid protein 1; Short=CP-1; AltName: Full=22.5 kDa protein; AltName: Full=Coat protein 1; Contains: RecName: Full=Capsid protein 2; Short=CP-2; AltName: Full=26 kDa protein; AltName: Full=Coat protein 2; Contains: RecName: Full=Capsid protein 3; Short=CP-3; AltName: Full=31 kDa protein; AltName: Full=Coat protein 3; Contains: RecName: Full=Putative helicase; AltName: Full=Putative NTP-binding protein; Contains: RecName: Full=Probable picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=Probable RNA-directed RNA polymerase [Rice tungro spherical virus (isolate A)] Sequence ID: Q83034.1 Length: 3473 Range 1: 2911 to 3417 Score:85.5 bits(210), Expect:3e-16, Method:Compositional matrix adjust., Identities:121/510(24%), Positives:218/510(42%), Gaps:73/510(14%) Query 21 SKTKLEPSAFHYVFEGVK-EPAVLTKNDPRLK------TDFEEAI--FSKYV----GNKI 67 +KT + S H + +K EP+VL+ D RL ++A+ + Y+ +I Sbjct 2911 TKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWDPMKDAVKKYGSYILPFPTEEI 2970 Query 68 TEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYV------ 121 EV+ ++ + + ++N+ ++ + + + G+D +++ TS GYPY+ Sbjct 2971 QEVENFLIKKFRRKENSRRTRNVNSLEVGI-NGIDGSDFWSPIEMKTSPGYPYILKRPSG 3029 Query 122 AMGKK--------------KRDILNKQTRDTKEMQKLLDTYGINLPLVTY--VKDELRSK 165 A GKK K + + + + E K T G+ ++T +KDE R Sbjct 3030 AQGKKYLFEELEPYPSGRPKYAMKDPELIENYERIKEEVTSGVKPSIMTMECLKDERRKL 3089 Query 166 TKV-EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPD-LFWSKIP- 222 K+ E+ +R S ++ R FG+ +AA + S VG +P+ + WS + Sbjct 3090 AKIYEKPATRTFTILSPEVNILFRQYFGD-FAAMVMSTRREHFSQVGINPESMEWSDLIN 3148 Query 223 --VLMEEKLFAFDYTGYDASLSPAWFEALKMVLE------KIGFGDRVDYIDYLNHSHHL 274 + + K FA DY+ +D SPA + ++ V+ ++ R I + H + Sbjct 3149 SLLRVNTKGFAGDYSKFDGIGSPAIYHSIVNVVNAWYNDGEVNARARHSLISSIVHRDGI 3208 Query 275 YKNKTYCVKGGMPSGCSGTSIFNSMIN---------NLIIRTLLLKTYKGIDLD-HLKMI 324 + GMPSG + T IFNS +N + + +LL D D + K++ Sbjct 3209 CGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIV 3268 Query 325 AYGDDVIASYPHEV----DASLLAQSGKDYGLTMTPADKSATFETVTWENVT---FLKRF 377 AYGDD + S E + +A +G+T T DK+ + +E++T FLKR Sbjct 3269 AYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDGDKNPIHMSKPYEDITKMSFLKRG 3328 Query 378 FRADEKYPFLIHPVMPMKEIHESIRWTKDP----RNTQDHVRSLCLLAWHNGEEEYNKFL 433 F E FL + I E + W +D + ++ S A +G + ++ + Sbjct 3329 FERVESSGFLWKAPLDKTSIEERLNWIRDCPTPVEALEQNIESALHEAAIHGRDYFDDLV 3388 Query 434 AKIRSVPIGRALLLP---EYSTLYRRWLDS 460 ++ S + R +L P + RW S Sbjct 3389 RRLNSA-LTRVMLPPTDISFEECQARWWAS 3417 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1; AltName: Full=Protein p5.6; Contains: RecName: Full=NS2; AltName: Full=Protein p32; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p39; Contains: RecName: Full=NS4; AltName: Full=3A-like protein p30; AltName: Full=Protein p30; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; AltName: Full=p13; Contains: RecName: Full=Protease-polymerase p76; Short=Pro-Pol; AltName: Full=NS6-7 [Feline calicivirus strain CFI/68 FIV] Sequence ID: P27407.3 Length: 1762 Range 1: 1261 to 1737 Score:82.8 bits(203), Expect:2e-15, Method:Compositional matrix adjust., Identities:126/500(25%), Positives:203/500(40%), Gaps:77/500(15%) Query 16 IINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAI------FSKYVGNKITE 69 II ++ + P+ E +PA L DPR + + V + Sbjct 1261 IIPKGTRLHVSPAHLEDFEECSHQPASLGSGDPRCPKSLTAIVVDSLKPYCVVVNGPPHD 1320 Query 70 V-DEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKR 128 + K +DH +G + ++I+++ L L+ TS G PY+ G+KK Sbjct 1321 ILHRVQKMLIDHLSG-FVPMNISSDTSMLS-------AFHKLNHDTSCG-PYLG-GRKKD 1370 Query 129 DILN----KQTRDTKEMQKLLDTYGINLP--LVTYVKDELRSKTKVEQGKSRLIEASSLN 182 ++N K D + L T GI LP +KDELR KV++GK R+I + Sbjct 1371 HMVNGEPDKALLDLLSSKWKLATQGIALPHEYTIGLKDELRPIEKVQEGKRRMIWGCDVG 1430 Query 183 DSVAMRMAFGNLYAAFHKNP--GVITGSAVGCDPD------LFWSKIPVLMEEKLFAFDY 234 + AF + A N G I VG + D LF + K+FA DY Sbjct 1431 VATVCAAAFKGVSDAITANHQYGPI---QVGINMDSPSVEALFQR---IKSARKVFAVDY 1484 Query 235 TGYDASLSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHH-----LYKNKTYCVKGGMPSG 289 + +D++ SP A +L F DR +D ++ ++ V G+PSG Sbjct 1485 SKWDSTQSPRVSAASIDILRY--FSDRTPIVDSATNTLKSPPIAVFNGVAVKVSSGLPSG 1542 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDL-------DHLKMIAYGDDVIASYP------- 335 TS+ NS+ + L + +L++ + ++ M+ YGDD + +P Sbjct 1543 MPLTSVINSLNHCLYVGCAILQSLEARNVPVTWNLFSTFDMMTYGDDGVYMFPTMYASIS 1602 Query 336 HEVDASLLAQSGKDYGLTMTPADKS-ATFETVTWENVTFLKR-FFRADEKYPFLIHPVMP 393 ++ A+L A YGL T DKS + E + +V FLKR R + L+ Sbjct 1603 DQIFANLSA-----YGLKPTRVDKSVGSIEPIDPNSVVFLKRTITRTPQGIRGLLDRSSI 1657 Query 394 MKEIH-----ESIRW-----TKDPRNTQDHVRSLCLLAWHNGEEEYNKF--LAKIRSVPI 441 +++ + + W T DP + + + CL A +G + YNK LA+ Sbjct 1658 LRQFYYIKGENTDNWKEPPKTIDPMSRGQQLWNACLYASQHGIDFYNKVYKLAEKAVEYE 1717 Query 442 GRALLLPEYSTLYRRWLDSF 461 G L P YST + F Sbjct 1718 GLHLEPPSYSTALEHYNSQF 1737 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine chrome mosaic virus] Sequence ID: P13025.1 Length: 2252 Range 1: 1477 to 1959 Score:80.9 bits(198), Expect:9e-15, Method:Compositional matrix adjust., Identities:111/496(22%), Positives:197/496(39%), Gaps:88/496(17%) Query 37 VKEPAVLTKNDPRLKTDFE--EAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQ 94 +KEP++++KNDPR + + +A K + ++D+ + +D AG ++ + E Sbjct 1477 IKEPSIISKNDPRCPANVDPPKAAMKKKFQQPMLDLDQ---KCLDEIAGDMLETWYDCED 1533 Query 95 MCLED-----AMYGTDG------LEALDLSTSAGYPYV---AMGKKKRDILN-------- 132 L D A+ G LE + TS GYPY +GK K Sbjct 1534 SILSDIPLATAINGIPAGCEDAELENFVMKTSPGYPYFKNKGLGKGKHPYFEECEDGSLK 1593 Query 133 -KQTRDTKEMQKLLDTYG----INLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAM 187 K+ E+ + + + L ++ KDEL K++ G RL E L+ ++ + Sbjct 1594 LKEGSQAAELYENMAQFAKEEVPELVVIECPKDELLPARKIKVGPCRLFEIMPLHYNLLL 1653 Query 188 RMAFGNLYAAFHKNPGVITGSAVGCDP-----DLFWSKIPVLMEEKLFAFDYTGYDASLS 242 R+ A N + VG +P +++ + + DY+G+D L+ Sbjct 1654 RVKTCAFTAFLQHNRHRLP-CQVGTNPYSREWGHLLNRLRRVKTNEAINCDYSGFDGLLT 1712 Query 243 PAWFEALKMVLEKIGF---------GDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGT 293 P E + ++ ++ R++ I L + L + Y V G+PSG + T Sbjct 1713 PQLVEMMAKMINRLYLRSGESEVMQAQRLNMIMALCGRYALVGTQVYKVNCGLPSGFALT 1772 Query 294 SIFNSMINNLIIR----TLLLKTYKGIDLDHLKMIAYGDDVIASYPHEV------DASLL 343 + NS+ N ++IR TL K ++ ++ YGDD + S V +A + Sbjct 1773 VVMNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRV 1832 Query 344 AQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRW 403 + K +T + T E + + FLKR F ++ + P + I + W Sbjct 1833 TLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAP-LDKSAIFSCLHW 1891 Query 404 TKDPRNTQDHVR----------------------SLCLLAWHNGEEEYNKFLAKIRSVPI 441 P+ ++ ++ SL L HN +EE+N ++RS I Sbjct 1892 LT-PQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFN----RVRSFYI 1946 Query 442 GRALLLPEYSTLYRRW 457 R LP +R W Sbjct 1947 AR---LPMQVDQFRTW 1959 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Andean potato mottle virus] Sequence ID: Q02941.1 Length: 729 Range 1: 57 to 471 Score:77.8 bits(190), Expect:5e-14, Method:Compositional matrix adjust., Identities:103/418(25%), Positives:175/418(41%), Gaps:59/418(14%) Query 17 INAPSKTKLE--PSAFHYVFEGVKEPAVLTKNDPRLKTDFE-----EAIFSKYVGNKITE 69 ++ P+KT E P ++H KEP++L+ +DPR+ E A KY N + Sbjct 57 VSCPTKTSFERTPESYHLGLPCEKEPSILSSHDPRIPEHVEGYCPFRAGIQKY-ANPMGH 115 Query 70 VDEYMKEAVDHYAGQL---MSLDINTEQMCLEDAMYGTDGLEALDL---STSAGYPYV-- 121 +D + V H + D ++ LE A+ G D +E ++ STS G+P+V Sbjct 116 LDHDLMYEVAHDMQESWHDCVQDFTFPEVDLETAINGIDMVEYMECIPKSTSEGFPHVLS 175 Query 122 -AMGKK----------KRDILNKQTRDTKE---MQKLLDTYGINLPLVTYVKDELRSKTK 167 A G+K ++ L + T K +Q+ +D L + KDE K Sbjct 176 RAPGEKGKMRFLEGDGEKFSLREGTSVKKAYDLLQEEIDRSVPTLVAIECPKDEKLPLRK 235 Query 168 V-EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDP-DLFWSKIPVLM 225 + K+R + ++ +R F + K V+ S VG +P L W I + Sbjct 236 IYTSPKTRCFSILPMEYNLLVRQKFLHFVRFMMKRRDVLP-SQVGVNPYSLEWGAIARRL 294 Query 226 EE---KLFAFDYTGYDASLSPAWFEALKMVLEKIGFGD------RVDYIDYLNHSHHLYK 276 +E + DY+ +D +S + + GD R + + + K Sbjct 295 QEVGNSILCCDYSSFDGLMSSQVMSCIADTMNDFMGGDVSLKRQRKNLLMACCSRFSVVK 354 Query 277 NKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYK----------GIDLDHLKMIAY 326 + V+GG+PSG T + N + N L++R K + D +++ + Y Sbjct 355 GNVWRVEGGIPSGFPLTVVMNGIFNELLVRYCFKKIMREGGATPLECSAFD-SYIRFVVY 413 Query 327 GDD-VIASYP---HEVDASLLAQSGKDYGLTMTPA-DKS-ATFETVTWENVTFLKRFF 378 GDD +I+ P + + LL + +G+T+T DK+ T E E+ FLKR F Sbjct 414 GDDNLISVSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGF 471 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p48; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p41; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Southampton virus (serotype 3)] Sequence ID: Q04544.2 Length: 1788 Range 1: 1303 to 1764 Score:72.0 bits(175), Expect:6e-12, Method:Compositional matrix adjust., Identities:123/484(25%), Positives:197/484(40%), Gaps:68/484(14%) Query 21 SKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDH 80 +KTK S+ + GV EPA L DPR+ VG + +V + Sbjct 1303 TKTKFWKSSPEPLPPGVYEPAYLGGRDPRVT-----------VGPSLQQVLRDQLKPFAE 1351 Query 81 YAGQ-----LMSLDINTEQMCLEDAMYG------TDGLEALDLSTSAGYPYVAMGKKKRD 129 G+ L+ + T LE M +D ++LD +TS+G+PY ++K D Sbjct 1352 PRGRMPEPGLLEAAVETVTSSLEQVMDTPVPWSYSDACQSLDKTTSSGFPY---HRRKND 1408 Query 130 ILNKQT--RDTKEM----QKLLDTYGINLPLVT-YVKDELRSKTKVEQG-KSRLIEASSL 181 N T R+ E + + P+ T +KDEL KV Q K RL+ + L Sbjct 1409 DWNGTTFVRELGEQAAHANNMYEQAKSMKPMYTGALKDELVKPEKVYQKVKKRLLWGADL 1468 Query 182 NDSVAMRMAFGNLYAAFH----KNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGY 237 V AFG A K P + +++ P ++ F DYT + Sbjct 1469 GTVVRAARAFGPFCDAIKSHTIKLPIKVGMNSIEDGPLIYAEHSKYKYH---FDADYTAW 1525 Query 238 DASLSPAWFEALKMVLEKIGFGDRVDYI---DYLNHSHHLYKNKTYCVKGGMPSGCSGTS 294 D++ + ++ ++ + + D L S + VK G+PSG TS Sbjct 1526 DSTQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTS 1585 Query 295 IFNSMINNLIIRTLLLKTYKGIDLDHLKMIAY----GDDVIASYPHEVDASLLAQSGKDY 350 NS IN+ +I L G+ D ++ ++Y GDD I S E D + L Q ++Y Sbjct 1586 QVNS-INHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLREY 1644 Query 351 GLTMTPADKSATFETV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPR 408 GL T DKS V + + + FL+R D + I I WT+ P Sbjct 1645 GLRPTRPDKSEGPIIVRKSVDGLVFLRRTISRDAAG---FQGRLDRASIERQIYWTRGPN 1701 Query 409 NT----------QDHVRSLCLL--AWHNGEEEYNKFLAK-IRSVPIGR-ALLLPEYSTLY 454 ++ Q V+ + LL A +GE+ Y K +K I+ + G + +P + ++ Sbjct 1702 HSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMF 1761 Query 455 RRWL 458 RW+ Sbjct 1762 -RWM 1764 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-BS89] Sequence ID: Q89273.1 Length: 2344 Range 1: 1300 to 1657 Score:70.9 bits(172), Expect:1e-11, Method:Compositional matrix adjust., Identities:95/374(25%), Positives:153/374(40%), Gaps:50/374(13%) Query 39 EPAVLTKNDPRLKTDFEEAIFSKYVGN--------KITEVDEYMKEAVDHYAGQLMSLDI 90 PA L ++DP D ++++ + V N K+ +VDE+++ A G L L Sbjct 1300 RPANLGRSDP----DSDKSLMNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTK 1355 Query 91 NTEQMCLE-DAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYG 149 Q L A + T LDLSTS G P+V KK D + D + L + Sbjct 1356 GERQANLNFKAAFNT-----LDLSTSCG-PFVP--GKKIDHVKDGVMDQVLAKHLYKCWS 1407 Query 150 I-------NLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNP 202 + + +KDELR KV +GK RL+ + +V F N+ +K Sbjct 1408 VANSGKALHHIYACGLKDELRPLDKVREGKKRLLWGCDVGVAVCRAAVFHNIC---YKLK 1464 Query 203 GVITGSAVGCDPDLFWSKIPVLME------EKLFAFDYTGYDASLSPA----WFEALKMV 252 V + D+ + V++ DY+ +D+++SP + L Sbjct 1465 MVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVVRLAIDILADC 1524 Query 253 LEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKT 312 E+ V + +H + K G+PSG TS+ NS+ + L+ + K+ Sbjct 1525 CEQTELTKSV-VLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKS 1583 Query 313 YKGIDL------DHLKMIAYGDD-VIASYPHEVDA-SLLAQSGKDYGLTMTPADKSATFE 364 I L + YGDD V A P V + ++ +DYGL+ T ADK+ + Sbjct 1584 CAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTEFID 1643 Query 365 TVTWENVTFLKRFF 378 ++FLKR F Sbjct 1644 VCPLNKISFLKRTF 1657 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=NTP-binding protein; Short=NTB; AltName: Full=membrane-binding protein; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tomato black ring virus (strain MJ)] Sequence ID: Q8B8X3.1 Length: 2266 Range 1: 1493 to 1908 Score:70.9 bits(172), Expect:1e-11, Method:Compositional matrix adjust., Identities:103/427(24%), Positives:172/427(40%), Gaps:71/427(16%) Query 37 VKEPAVLTKNDPR--LKTDFEEAIFSKYVGNKITEVDEYMKEAVDHYAGQLMSLDINTEQ 94 VKEPAVLTK+DPR + D A K + E+++ E +D A ++ + E Sbjct 1493 VKEPAVLTKDDPRCPIGVDPPRAALKKKFTQPMMELEQ---EILDEVATDILETWYDCED 1549 Query 95 MCLED-----AMYGTDG------LEALDLSTSAGYPYVAMGKKKR--------------D 129 L D A+ G LE + TS GYPY + ++ Sbjct 1550 HVLSDISLSVAINGIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGS 1609 Query 130 ILNKQTRDTKEMQKLLDTYGIN----LPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSV 185 + K+ E+ + L + N L ++ KDEL + K++ G RL E L+ ++ Sbjct 1610 LQLKKGGMAAELHENLVEFTKNEVPELVVIECTKDELLPERKIKVGACRLFEIMPLHYNL 1669 Query 186 AMRM---AFGN-LYAAFHKNPGVITGSAVGCDP-DLFWSK-IPVLMEEKL---FAFDYTG 236 +R AF L H+ P VG +P W + LM K DY+G Sbjct 1670 FLRQKTCAFTQFLQHNRHRLP-----CQVGTNPYSREWGHMLNRLMRPKTNEAINCDYSG 1724 Query 237 YDASLSPAWFEALKMVLEKI----GFGD-----RVDYIDYLNHSHHLYKNKTYCVKGGMP 287 +D L+P E + ++ ++ G D R + + L + + Y V G+P Sbjct 1725 FDGLLNPQLIECIARMINRLYALSGESDVQQAQRYNMLMALVGRYAFVGQQVYKVNCGLP 1784 Query 288 SGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLK----MIAYGDDVIASYPHEV----- 338 SG + T + NS+ N ++IR K + + ++ YGDD + S + Sbjct 1785 SGFALTVVVNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFT 1844 Query 339 -DASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKR-FFRADEKYPFLIHPVMPMKE 396 +A + + K +T + T E ++ + FLKR F + D ++ + Sbjct 1845 GEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNG---IVQAPLDRSA 1901 Query 397 IHESIRW 403 I S+ W Sbjct 1902 IFSSLYW 1908 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Protein p48; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p40; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Norovirus Hu/1968/US] Sequence ID: Q83883.1 Length: 1789 Range 1: 1304 to 1765 Score:68.9 bits(167), Expect:4e-11, Method:Compositional matrix adjust., Identities:121/484(25%), Positives:192/484(39%), Gaps:68/484(14%) Query 21 SKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEV-DEYMKEAVD 79 +KTK S+ + GV EPA L DPR++ G + +V + +K D Sbjct 1304 TKTKFWRSSPEPLPPGVYEPAYLGGKDPRVQN-----------GPSLQQVLRDQLKPFAD 1352 Query 80 HYAGQ----LMSLDINTEQMCLEDAMYG------TDGLEALDLSTSAGYPYVAMGKKKRD 129 L+ + T LE M D ++LD +TS+GYP+ K+K D Sbjct 1353 PRGRMPEPGLLEAAVETVTSMLEQTMDTPSPWSYADACQSLDKTTSSGYPH---HKRKND 1409 Query 130 ILNKQT------RDTKEMQKLLDTYGINLPLVTY-VKDELRSKTKVEQG-KSRLIEASSL 181 N T + + P+ T +KDEL K+ Q K RL+ + L Sbjct 1410 DWNGTTFVGELGEQAAHANNMYENAKHMKPIYTAALKDELVKPEKIYQKVKKRLLWGADL 1469 Query 182 NDSVAMRMAFGNLYAAFH----KNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGY 237 V AFG A K P + + + P ++ + F DYT + Sbjct 1470 GTVVRAARAFGPFCDAIKSHVIKLPIKVGMNTIEDGPLIYAEHAKY---KNHFDADYTAW 1526 Query 238 DASLSPAWFEALKMVLEKIGFGDRVDYI---DYLNHSHHLYKNKTYCVKGGMPSGCSGTS 294 D++ + ++ ++ + + D L S + VK G+PSG TS Sbjct 1527 DSTQNRQIMTESFSIMSRLTASPELAEVVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTS 1586 Query 295 IFNSMINNLIIRTLLLKTYKGIDLDHLKMIAY----GDDVIASYPHEVDASLLAQSGKDY 350 NS IN+ II L G+ D ++ ++Y GDD I S + D + L Q K+Y Sbjct 1587 QVNS-INHWIITLCALSEATGLSPDVVQSMSYFSFYGDDEIVSTDIDFDPARLTQILKEY 1645 Query 351 GLTMTPADKSATFETV--TWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTKDPR 408 GL T DK+ V + + FL+R D + I I WT+ P Sbjct 1646 GLKPTRPDKTEGPIQVRKNVDGLVFLRRTISRDAAG---FQGRLDRASIERQIFWTRGPN 1702 Query 409 ----------NTQDHVRSLCLL--AWHNGEEEYNKFLAK-IRSVPIGR-ALLLPEYSTLY 454 +TQ ++ + LL A +GE+ Y K +K I + G + +P + ++ Sbjct 1703 HSDPSETLVPHTQRKIQLISLLGEASLHGEKFYRKISSKVIHEIKTGGLEMYVPGWQAMF 1762 Query 455 RRWL 458 RW+ Sbjct 1763 -RWM 1765 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-AST89] Sequence ID: Q86119.2 Length: 2344 Range 1: 1300 to 1657 Score:68.6 bits(166), Expect:6e-11, Method:Compositional matrix adjust., Identities:95/374(25%), Positives:154/374(41%), Gaps:50/374(13%) Query 39 EPAVLTKNDPRLKTDFEEAIFSKYVGN--------KITEVDEYMKEAVDHYAGQLMSLDI 90 PA L ++DP D ++++ + V N K+ +VDE+++ A G L L Sbjct 1300 RPANLGRSDP----DSDKSLMNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTK 1355 Query 91 NTEQMCLE-DAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYG 149 Q L A + T LDLSTS G P+V KK D + D + L + Sbjct 1356 GERQANLNFKAAFNT-----LDLSTSCG-PFVP--GKKIDHVKDGVMDQVHAKHLYKCWS 1407 Query 150 I-------NLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNP 202 + + +KDELR KV++GK RL+ + +V F N+ +K Sbjct 1408 VANSGKALHHIYACGLKDELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNIC---YKLK 1464 Query 203 GVITGSAVGCDPDLFWSKIPVLME------EKLFAFDYTGYDASLSPA----WFEALKMV 252 V + D+ + V++ DY+ +D+++SP + L Sbjct 1465 MVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVVRLAIDILADC 1524 Query 253 LEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKT 312 E+ V + +H + K G+PSG TS+ NS+ + L+ + K+ Sbjct 1525 CEQTELTKSV-VLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKS 1583 Query 313 YKGIDL------DHLKMIAYGDD-VIASYPHEVDA-SLLAQSGKDYGLTMTPADKSATFE 364 I L + YGDD V A P V + ++ +DYGL+ T ADK+ + Sbjct 1584 CAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTEFID 1643 Query 365 TVTWENVTFLKRFF 378 ++FLKR F Sbjct 1644 VCPLNKISFLKRTF 1657 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [European brown hare syndrome virus GD] Sequence ID: Q96725.1 Length: 2334 Range 1: 1293 to 1654 Score:67.8 bits(164), Expect:1e-10, Method:Compositional matrix adjust., Identities:100/382(26%), Positives:159/382(41%), Gaps:58/382(15%) Query 39 EPAVLTKNDPRLKTDFEEAIFSKYVGN--------KITEVDEYMKEAVDHYAGQLMSLDI 90 PA L + DP D + + V N K+T+VD +++ A G L L Sbjct 1293 RPANLGRGDP----DSHCTLMNIAVKNLQVYQQEPKLTKVDTFIERAAADVLGFLRFLTK 1348 Query 91 NTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRD--TKEMQKLLDTY 148 QM L + LDLSTS G P+V GKK + + + + +K + K Sbjct 1349 GERQMNLNFSA----AFNVLDLSTSCG-PFVP-GKKIDHVKDGKLDEVLSKHLYKCWSVA 1402 Query 149 GINLPL----VTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGV 204 L +KDELR KV++GK RL+ ++ ++ F NL K Sbjct 1403 NSGKALHHVYACGLKDELRPLDKVKEGKKRLLWGCNVGVALCAAAVFHNLCFKL-KTVAR 1461 Query 205 ITGSAVGCDPDLFWSKIPVLMEE------KLFAFDYTGYDASLSPAWFEALKMVLEKIGF 258 AVG D + + V++ + DY+ +D+++SP +++ ++ + Sbjct 1462 FGPIAVGID--MTSRDVDVMITQLTSKAGDFLCLDYSKWDSTMSPC---VVRLAIDILA- 1515 Query 259 GDRVDYIDYLNHSHHLYKNKTYCV--------KGGMPSGCSGTSIFNSMINNLIIRTLLL 310 D + + K+ V K G+PSG TS+ NS+ + L+ + Sbjct 1516 -DCCEQTELTKSVVLTLKSLPMTVLDAMIVPTKRGLPSGMPFTSVINSICHWLLWSAAVY 1574 Query 311 KTYKGIDL------DHLKMIAYGDD-VIASYPHEVDASLLA---QSGKDYGLTMTPADKS 360 K I L + YGDD V A P V SLL + +DYGL+ T ADK+ Sbjct 1575 KACDEIGLFCSNLYEDAPFFVYGDDGVYAMTPMMV--SLLPAILDNLRDYGLSPTAADKT 1632 Query 361 ATFETVTWENVTFLKRFFRADE 382 + ++++FLKR F E Sbjct 1633 EFIDVCPLKDISFLKRKFVMSE 1654 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-SD] Sequence ID: Q86117.1 Length: 2344 Range 1: 1300 to 1657 Score:67.4 bits(163), Expect:1e-10, Method:Compositional matrix adjust., Identities:95/374(25%), Positives:154/374(41%), Gaps:50/374(13%) Query 39 EPAVLTKNDPRLKTDFEEAIFSKYVGN--------KITEVDEYMKEAVDHYAGQLMSLDI 90 PA L ++DP D ++++ + V N K+ +VDE+++ A G L L Sbjct 1300 RPANLGRSDP----DSDKSLMNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTK 1355 Query 91 NTEQMCLE-DAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYG 149 Q+ L A + T LDLSTS G P+V KK D + D + L + Sbjct 1356 GERQVNLNFKAAFNT-----LDLSTSCG-PFVP--GKKIDHVKDGVMDQVLAKHLYKCWS 1407 Query 150 I-------NLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNP 202 + + +KDELR KV++GK RL+ + +V F N+ +K Sbjct 1408 VANSGKALHHIYACGLKDELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNIC---YKLK 1464 Query 203 GVITGSAVGCDPDLFWSKIPVLME------EKLFAFDYTGYDASLSPA----WFEALKMV 252 V + D+ + V++ DY+ +D+++SP + L Sbjct 1465 MVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVVRLAIDILADC 1524 Query 253 LEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKT 312 E+ V + +H + K G+PSG TS+ NS+ + L+ + K+ Sbjct 1525 CEQTELTKSV-VLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKS 1583 Query 313 YKGIDL------DHLKMIAYGDD-VIASYPHEVDA-SLLAQSGKDYGLTMTPADKSATFE 364 I L + YGDD V A P V + ++ +DYGL T ADK+ + Sbjct 1584 CAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLLPTAADKTEFID 1643 Query 365 TVTWENVTFLKRFF 378 ++FLKR F Sbjct 1644 VCPLNKISFLKRTF 1657 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-FRG] Sequence ID: P27410.1 Length: 2344 Range 1: 1300 to 1657 Score:67.4 bits(163), Expect:1e-10, Method:Compositional matrix adjust., Identities:95/374(25%), Positives:154/374(41%), Gaps:50/374(13%) Query 39 EPAVLTKNDPRLKTDFEEAIFSKYVGN--------KITEVDEYMKEAVDHYAGQLMSLDI 90 PA L ++DP D ++++ + V N K+ +VDE+++ A G L L Sbjct 1300 RPANLGRSDP----DSDKSLMNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTK 1355 Query 91 NTEQMCLE-DAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYG 149 Q L A + T LDLSTS G P+V KK D + D + L + Sbjct 1356 GERQANLNFKAAFNT-----LDLSTSCG-PFVP--GKKIDHVKDGVMDQVLAKHLYKCWS 1407 Query 150 I-------NLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNP 202 + + +KDELR KV++GK RL+ + +V F N+ +K Sbjct 1408 VANSGKALHHIYACGLKDELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNIC---YKLK 1464 Query 203 GVITGSAVGCDPDLFWSKIPVLME------EKLFAFDYTGYDASLSPA----WFEALKMV 252 V + D+ + V++ DY+ +D+++SP + L Sbjct 1465 MVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVVRLAIDILADC 1524 Query 253 LEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKT 312 E+ V + +H + K G+PSG TS+ NS+ + L+ + K+ Sbjct 1525 CEQTELTKSV-VLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKS 1583 Query 313 YKGIDL------DHLKMIAYGDD-VIASYPHEVDA-SLLAQSGKDYGLTMTPADKSATFE 364 I L + YGDD V A P V + ++ +DYGL+ T ADK+ + Sbjct 1584 CAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTEFID 1643 Query 365 TVTWENVTFLKRFF 378 ++FLKR F Sbjct 1644 VCPLNKISFLKRTF 1657 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Raspberry ringspot virus strain cherry] Sequence ID: Q6W8W4.1 Length: 2367 Range 1: 1676 to 2026 Score:67.0 bits(162), Expect:2e-10, Method:Compositional matrix adjust., Identities:77/360(21%), Positives:157/360(43%), Gaps:53/360(14%) Query 90 INTEQMCLEDAMYGTDGLEALDLSTSAGYPYV---AMGKKKRDILNKQTRDTK------- 139 + C E+ + + LDL+TS GYP G K ++ + + + K Sbjct 1676 VKARSPCCEEIFF-----DGLDLTTSEGYPLFLDRPAGAKGKERFFEGSENQKFLIPDCP 1730 Query 140 ---EMQKLLDTYGINLPLVTY---VKDELRSKTKVEQGK----SRLIEASSLNDSVAMRM 189 +++K ++ + P + KDEL + KV + +RL ++ +R Sbjct 1731 LDVQLKKGIEETHLGTPQLIIKESAKDELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQ 1790 Query 190 AFGNLYAAFHK-------NPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLS 242 F + + K G++ GS + D +++ +K++ DY+ +D ++ Sbjct 1791 HFVYIAESVRKRRRTLSSQVGIVVGSR---EWDDLAARLRSKKNDKMYCCDYSKFDGLMT 1847 Query 243 PAWFEALKMVLEKIGFGD------RVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIF 296 P A+ + E++ G+ R + + + + + ++ Y V+ GMPSG + T F Sbjct 1848 PQIVHAITNIYERMFSGNDGMSQFRQNLLMGICNRISICGSQVYRVEAGMPSGFALTVDF 1907 Query 297 NSMINNLII----RTLLLKTYKGIDLDHLKMIAYGDDVIASYPHEVDASLLAQSGKDY-- 350 NS+ N +++ R+L+ + + +++ +I YGDD + ++++ + K Y Sbjct 1908 NSIFNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMK 1967 Query 351 ---GLTMT-PADK-SATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTK 405 G+ +T ADK S E FLKR +R D +Y P++ I+ +R+ + Sbjct 1968 EELGIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVET-SIYSCLRYVR 2026 >RecName: Full=Genome polyprotein; AltName: Full=p254; Contains: RecName: Full=NS1; AltName: Full=Protein p16; Contains: RecName: Full=NS2; AltName: Full=Protein p23; Contains: RecName: Full=NTPase; AltName: Full=2C-like protein; AltName: Full=NS3; AltName: Full=P2C; AltName: Full=p37; Contains: RecName: Full=Precursor p41; Contains: RecName: Full=NS4; AltName: Full=Protein p29; Contains: RecName: Full=Protein p23/2; Contains: RecName: Full=Protein p18; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=NS5; AltName: Full=VPg; AltName: Full=p13; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; AltName: Full=Thiol protease P3C; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=3Dpol; AltName: Full=NS7; AltName: Full=p58; Contains: RecName: Full=Capsid protein VP60 [Rabbit hemorrhagic disease virus-V351] Sequence ID: P27411.2 Length: 2344 Range 1: 1300 to 1657 Score:64.7 bits(156), Expect:9e-10, Method:Compositional matrix adjust., Identities:97/374(26%), Positives:153/374(40%), Gaps:50/374(13%) Query 39 EPAVLTKNDPRLKTDFEEAIFSKYVGN--------KITEVDEYMKEAVDHYAGQLMSLDI 90 PA L ++DP D ++++ + V N K+ +VDE+++ A G L L Sbjct 1300 RPANLGRSDP----DSDKSLMNIAVKNLQVYQQEPKLDKVDEFIERAAADVLGYLRFLTK 1355 Query 91 NTEQMCLE-DAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYG 149 Q L A + T LDLSTS G P+ KK D + D + L + Sbjct 1356 GERQANLNFKAAFNT-----LDLSTSCG-PFAP--GKKIDHVKDGVMDQVLAKHLYKCWS 1407 Query 150 I-------NLPLVTYVKDELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGN----LYAAF 198 + + +KDELR KV++GK RL+ + +V F N L Sbjct 1408 VANSGKALHHIYACGLKDELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNICYELKMVA 1467 Query 199 HKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDASLSPA----WFEALKMVLE 254 P + D D+ + + + DY+ +D+++SP + L E Sbjct 1468 RFGPIAVGVDMTSRDVDVIINNLTSKASD-FLCLDYSKWDSTMSPCVVRLAIDILADCCE 1526 Query 255 KIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYK 314 + V + +H + K G+PSG TS+ NS+ + L+ + K+ Sbjct 1527 QTELTKSV-VLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLLWSAAVYKSCA 1585 Query 315 GIDL------DHLKMIAYGDD-VIASYPHEVDASLLA---QSGKDYGLTMTPADKSATFE 364 I L + YGDD V A P V SLL ++ +DYGL+ T ADK+ + Sbjct 1586 EIGLHCSNLYEDAPFYTYGDDGVYAMTPMMV--SLLPAIIENLRDYGLSPTAADKTEFID 1643 Query 365 TVTWENVTFLKRFF 378 ++FLKR F Sbjct 1644 VCPLNKISFLKRTF 1657 >RecName: Full=RNA1 polyprotein; Contains: RecName: Full=Protease-cofactor; Contains: RecName: Full=Putative helicase; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Tomato torrado virus ESP/PRIToTV0301] Sequence ID: A1XIP9.1 Length: 2158 Range 1: 1231 to 1641 Score:63.5 bits(153), Expect:3e-09, Method:Compositional matrix adjust., Identities:103/428(24%), Positives:177/428(41%), Gaps:89/428(20%) Query 103 GTDGLEALDLSTSAGYPY--VAMGKKKRDILN----------KQTRDTKEMQKLLDT--- 147 G D + ++LSTS GYPY + MG KR+ + K+T + + LD Sbjct 1231 GFDYFDGMELSTSCGYPYNKLGMGTSKREFVEPSGDGDRVQLKRTTPIFDDWEALDVEIR 1290 Query 148 YGINLPLVT--YVKDELRSKTKV-EQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGV 204 G + LVT KDE KV + K+RL E + ++ +R F + A+ + Sbjct 1291 KGNFVELVTTQCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNA 1350 Query 205 ITGSAVGCDPD-LFWSKIPVLMEEKLFAFDYTGYDASLSPAWFEALKMVLEKIGFGDRVD 263 + VG +P + W+ L+ A TG+ A S F+ + F D VD Sbjct 1351 LP-CKVGINPGGIEWT----LLANGFRAVSDTGFSADYSS--FDGRAPIFAFQWFCDLVD 1403 Query 264 ---------------YIDYLNHSHH--LYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIR 306 ++ + S H + +NK + + GGMPSG + T IFNS++N +R Sbjct 1404 DYYGSPPGSPDSNARHVLLMMASCHYTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMR 1463 Query 307 ----TLLLKTY--------KGIDLDHLKMIAYGDDVIASYPHEVD-------------AS 341 +LL + + K D + L + YGDD + + P E+ + Sbjct 1464 YAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAVPMELHWYTLPAIAQELEMVN 1523 Query 342 LLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMK--EIHE 399 ++ ++G D + ++ + + + +TFL R F+ L + P+K I E Sbjct 1524 VIIKNGIDKNMDVSSS------KMLDLSELTFLSRGFKRHR----LGYVQAPLKWVSIIE 1573 Query 400 SIRWTKDPRNTQDHVRSLCLL------AWHNGEEEYNKFLAKIRSVPIGR---ALLLPEY 450 + W + D + L + A+H+G + + K + +++ R A P Y Sbjct 1574 PMYWIRPSVGCPDALAMLENIDTGVREAFHHGPQVFEKLVTDVQNALKERCFPATTFPTY 1633 Query 451 STLYRRWL 458 L + WL Sbjct 1634 FELEQDWL 1641 >RecName: Full=Genome polyprotein; Contains: RecName: Full=NS1-2; AltName: Full=NS1.2; AltName: Full=NS1/2; AltName: Full=Nterm; AltName: Full=Protein p37; Contains: RecName: Full=NS1; Contains: RecName: Full=NS2; Contains: RecName: Full=NTPase; AltName: Full=NS3; AltName: Full=p40; Contains: RecName: Full=NS4; AltName: Full=Protein p22; Contains: RecName: Full=Viral genome-linked protein; Short=VPg; AltName: Full=NS5; Contains: RecName: Full=3C-like protease; Short=3CLpro; AltName: Full=Calicivirin; AltName: Full=NS6; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=NS7 [Lordsdale virus] Sequence ID: P54634.1 Length: 1699 Range 1: 1198 to 1610 Score:49.7 bits(117), Expect:5e-05, Method:Compositional matrix adjust., Identities:102/424(24%), Positives:168/424(39%), Gaps:39/424(9%) Query 12 VGYPII---NAP---SKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGN 65 G PI+ +AP +KTK S+ + G EPA L DPR+K + Sbjct 1198 CGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLK 1257 Query 66 KITEVDEYMKEAVDHYAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGK 125 TE + A + +++ + + T +LD +TS+G+P+ Sbjct 1258 PFTEPRGKPPKPSVLEAAKRTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPH---HM 1314 Query 126 KKRDILNKQT-----RDTKEMQKLLDTYGINL-PLVT-YVKDELRSKTKV-EQGKSRLIE 177 +K D N ++ D L+ G N+ P+ T +KDEL K+ + K RL+ Sbjct 1315 RKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLW 1374 Query 178 ASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKL-----FAF 232 S L + AFG L K V VG + + P++ E + Sbjct 1375 GSDLATMIRCARAFGGLMDEL-KAHCVTLPIRVGMNMN---EDGPIIFERHSRYKYHYDA 1430 Query 233 DYTGYDASLSPAWFEALKMVLEKIGFGDRVDYI---DYLNHSHHLYKNKTYCVKGGMPSG 289 DY+ +D++ A A ++ K + I D L+ S + + G+PSG Sbjct 1431 DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSG 1490 Query 290 CSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIA----YGDDVIASYPHEVDASLLAQ 345 TS +NS I + ++ L + D ++ + YGDD I S ++ L Sbjct 1491 VPCTSQWNS-IAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDINLNPEKLTA 1549 Query 346 SGKDYGLTMTPADKSATFETVTWE--NVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRW 403 K+YGL T DK+ ++ + +TFL+R D P + I + W Sbjct 1550 KLKEYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRD---PAGWFGKLDQSSILRQMYW 1606 Query 404 TKDP 407 T+ P Sbjct 1607 TRGP 1610 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Cherry rasp leaf virus isolate potato] Sequence ID: Q6EWG9.1 Length: 2250 Range 1: 1577 to 2058 Score:47.8 bits(112), Expect:2e-04, Method:Compositional matrix adjust., Identities:115/493(23%), Positives:202/493(40%), Gaps:89/493(18%) Query 22 KTKLEPSAFHYVF--EGVKEPAVLTKNDPRLKTDF--EEAIF----SKYV--GNKITEVD 71 KT L PS E EPA+L++ D RLK E +F KY + + E Sbjct 1577 KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSLDEDL 1636 Query 72 EYMKEAVDHYAGQL---MSLDINTEQMC--LEDAMYGTDGLEALDLSTSAGYPYV----A 122 E ++A+D ++ D+ +Q+C +ED Y E + + T+ G+P+ A Sbjct 1637 EVFEDALDRVFLEIPEHACEDLTNDQVCNGIEDDPYA----EGIVMQTAEGFPFCTQRPA 1692 Query 123 MGKKKRDILNKQTRD---------TKEMQK--LLDTYGINLPLV--TYVKDELRSKTKVE 169 K + D EM K + + G+ PL+ + KDE +KV Sbjct 1693 GASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVY 1752 Query 170 -QGKSRLIEASSLNDSVAMRMAF-GNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEE 227 + K+RL ++ ++ +R F ++ ++ + + C + WS + + Sbjct 1753 IKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNE-WSILYHQLRS 1811 Query 228 K---LFAFDYTGYDASLSPAWFEALKMVLEKI----------GFGD----------RVDY 264 K F DY+ +D ++P L+ ++++I D R Sbjct 1812 KGTNWFNGDYSRFDG-ITPR--NVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLL 1868 Query 265 IDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHL--- 321 D + + L + V G+PSG T I NS++NN I +K K +L+ L Sbjct 1869 TDMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPL 1928 Query 322 ----KMIA---YGDDVIASYPHEVDASL----LAQSGKDYGLTM-TPADKSATFETVTW- 368 +M+A YGDD + S + +A ++G+T+ ADK+ + + Sbjct 1929 HSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYP 1988 Query 369 -ENVTFLKRFFRADEKYPFLIHPVMPMKEIHESIRWTK----DPRNTQDHVRSLCLLAWH 423 E V FLKR F + + ++ P+ P+ I E + W + + T ++ S A Sbjct 1989 LEKVDFLKRKFVHYQGH--VVAPLNPVN-ITERLHWIRKGLGEADATLENCSSAAFEALF 2045 Query 424 NGEEEYNKFLAKI 436 +G Y+ +AKI Sbjct 2046 HGRCYYDTLVAKI 2058