Operon IdGene Type COGgene PosLeft postRight Strand Function 1 thrL CDS NA 190 255 + NA 2 thrA CDS COG0527 337 2799 + [E] Aspartokinases thrB CDS COG0083 2801 3730 + [E] Homoserine kinase thrC CDS COG0498 3734 5020 + [E] Threonine synthase 3 yaaA CDS COG3022 5114 5887 - [S] Uncharacterized protein conserved in bacteria yaaJ CDS COG1115 5966 7396 - [E] Na+/alanine symporter 4 talB CDS COG0176 7665 8618 + [G] Transaldolase mog CDS COG0521 8729 9319 + [H] Molybdopterin biosynthesis enzymes 5 yaaH CDS COG1584 9376 9942 - [S] Predicted membrane protein 6 htgA CDS COG4735 10092 10805 - [S] Uncharacterized protein conserved in bacteria yaaI CDS NA 10841 11245 - NA 7 dnaK CDS COG0443 11593 13509 + [O] Molecular chaperone dnaJ CDS COG0484 13595 14734 + [O] DnaJ-class molecular chaperone with C-terminal Zn 8 cds-NP_459019.1 CDS COG2522 15014 15961 + [R] Predicted transcriptional regulator 9 cds-NP_459020.1 CDS ROG7288 16088 16432 + NA 10 cds-NP_459021.1 CDS COG3926 16493 17026 - [R] Putative secretion activating protein cds-NP_459022.1 CDS COG3710 17043 17486 - [K] DNA-binding winged-HTH domains 11 cds-NP_459023.1 CDS COG3325 17867 19966 + [G] Chitinase 12 cds-NP_459024.1 CDS NA 20058 23054 + NA 13 cds-NP_459025.1 CDS NA 23335 24039 + NA 14 bcfA CDS COG3539 24469 25011 + [NU] P pilus assembly protein, pilin FimA bcfB CDS COG3121 25112 25798 + [NU] P pilus assembly protein, chaperone PapD bcfC CDS COG3188 25803 28424 + [NU] P pilus assembly protein, porin PapC bcfD CDS COG3539 28425 29432 + [NU] P pilus assembly protein, pilin FimA bcfE CDS COG3539 29433 29978 + [NU] P pilus assembly protein, pilin FimA bcfF CDS COG3539 29994 30512 + [NU] P pilus assembly protein, pilin FimA bcfG CDS COG3121 30478 31209 + [NU] P pilus assembly protein, chaperone PapD bcfH CDS COG1651 31274 32119 + [O] Protein-disulfide isomerase 15 cds-NP_459034.1 CDS COG3710 32545 32994 - [K] DNA-binding winged-HTH domains 16 cds-NP_459035.1 CDS COG0583 33364 34368 + [K] Transcriptional regulator 17 cds-NP_459036.1 CDS COG3710 34376 34816 - [K] DNA-binding winged-HTH domains 18 cds-NP_459037.1 CDS ROG2478 35339 37057 + NA 19 cds-NP_459038.1 CDS COG0737 37103 38674 - [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 20 cds-NP_459039.1 CDS NA 38773 39534 - NA 21 cds-NP_459040.1 CDS COG3119 40131 41624 + [P] Arylsulfatase A and related enzymes cds-NP_459041.1 CDS COG0641 41723 42913 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) cds-NP_459042.1 CDS COG3677 42932 44185 + [L] Transposase and inactivated derivatives 22 cds-NP_459043.1 CDS ROG2478 44312 46027 + NA 23 nhaA CDS COG3004 46190 47356 + [P] Na+/H+ antiporter nhaR CDS COG0583 47418 48317 + [K] Transcriptional regulator 24 cds-NP_459046.1 CDS COG1501 48372 50411 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases cds-NP_459047.1 CDS COG2211 50451 51824 - [G] Na+/melibiose symporter and related transporters 25 rpsT CDS COG0268 52280 52543 - [J] Ribosomal protein S20 26 yaaY CDS NA 52649 52864 + NA ribF CDS COG0196 52872 53810 + [H] FAD synthase ileS CDS COG0060 53855 56689 + [J] Isoleucyl-tRNA synthetase lspA CDS COG0597 56689 57189 + [MU] Lipoprotein signal peptidase slpA CDS COG1047 57344 57793 + [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 lytB CDS COG0761 57796 58746 + [IM] Penicillin tolerance protein 27 cds-NP_459055.1 CDS NA 58946 60148 + NA rihC CDS COG1957 60164 61084 + [F] Inosine-uridine nucleoside N-ribohydrolase 28 cds-NP_459057.1 CDS COG4565 61106 61792 - [KT] Response regulator of citrate/malate metabolism cds-NP_459058.1 CDS COG3290 61794 63413 - [T] Signal transduction histidine kinase regulating citrate/malate 29 cds-NP_459059.1 CDS COG1883 63548 64849 - [C] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit cds-NP_459060.1 CDS COG5016 64862 66637 - [C] Pyruvate/oxaloacetate carboxyltransferase cds-NP_459061.1 CDS COG3630 66654 66893 - [C] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit 30 cds-NP_459062.1 CDS COG3493 67052 68392 - [C] Na+/citrate symporter 31 citC2 CDS COG3053 68637 69680 + [C] Citrate lyase synthetase citD2 CDS COG3052 69710 70003 + [C] Citrate lyase, gamma subunit citE2 CDS COG2301 70000 70869 + [G] Citrate lyase beta subunit citF2 CDS COG3051 70880 72400 + [C] Citrate lyase, alpha subunit citX2 CDS COG3697 72400 72951 + [HI] Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) citG2 CDS COG1767 72929 73837 + [H] Triphosphoribosyl-dephospho-CoA synthetase 32 dapB CDS COG0289 74017 74838 + [E] Dihydrodipicolinate reductase 33 cds-NP_446529.1 CDS NA 75088 75435 + NA 34 carA CDS COG0505 75880 77028 + [EF] Carbamoylphosphate synthase small subunit carB CDS COG0458 77047 80274 + [EF] Carbamoylphosphate synthase large subunit (split gene 35 caiF CDS NA 80548 80943 + NA 36 caiE CDS COG0663 81020 81616 - [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily caiD CDS COG1024 81725 82510 - [I] Enoyl-CoA hydratase/carnithine racemase caiC CDS COG0318 82564 84117 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II caiB CDS COG1804 84180 85397 - [C] Predicted acyl-CoA transferases/carnitine dehydratase caiA CDS COG1960 85509 86651 - [I] Acyl-CoA dehydrogenases caiT CDS COG1292 86686 88203 - [M] Choline-glycine betaine transporter 37 fixA CDS COG2086 88684 89454 + [C] Electron transfer flavoprotein, beta subunit fixB CDS COG2025 89470 90411 + [C] Electron transfer flavoprotein, alpha subunit fixC CDS COG0644 90461 91747 + [C] Dehydrogenases (flavoproteins) fixX CDS COG2440 91744 92031 + [C] Ferredoxin-like protein 38 yaaU CDS ROG2472 92178 93518 + NA 39 cds-NP_459085.1 CDS ROG7894 93607 93837 + NA 40 cds-NP_459086.1 CDS NA 94131 94547 + NA 41 cds-NP_459087.1 CDS COG3656 94771 95061 - [S] Predicted periplasmic protein 42 cds-NP_446547.1 CDS NA 95271 95465 + NA 43 cds-NP_459089.1 CDS COG3119 95959 97848 + [P] Arylsulfatase A and related enzymes 44 yabF CDS COG2249 98255 98785 + [R] Putative NADPH-quinone reductase (modulator of drug kefC CDS COG0475 98778 100640 + [P] Kef-type K+ transport systems, membrane components 45 folA CDS COG0262 100839 101318 + [H] Dihydrofolate reductase 46 apaH CDS ROG1223 101424 102272 - NA apaG CDS COG2967 102283 102660 - [P] Uncharacterized protein affecting Mg2+/Co2+ transport ksgA CDS COG0030 102663 103484 - [J] Dimethyladenosine transferase (rRNA methylation) pdxA CDS COG1995 103481 104470 - [H] Pyridoxal phosphate biosynthesis protein surA CDS COG0760 104470 105756 - [O] Parvulin-like peptidyl-prolyl isomerase imp CDS COG1452 105810 108170 - [M] Organic solvent tolerance protein OstA 47 djlA CDS COG1076 108424 109236 + [O] DnaJ-domain-containing proteins 1 48 rluA CDS COG0564 109331 109990 - [J] Pseudouridylate synthases, 23S RNA-specific hepA CDS COG0553 110002 112908 - [KL] Superfamily II DNA/RNA helicases, SNF2 family polB CDS COG0417 113082 115433 - [L] DNA polymerase elongation subunit (family B) cds-NP_459103.1 CDS COG1434 115477 116097 - [S] Uncharacterized conserved protein 49 cds-NP_446563.1 CDS NA 116299 116601 + NA 50 cds-NP_459105.1 CDS NA 116816 117235 + NA 51 araD CDS COG0235 117241 117936 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and araA CDS COG2160 118077 119579 - [G] L-arabinose isomerase araB CDS COG1069 119590 121299 - [C] Ribulose kinase 52 araC CDS COG2207 121640 122485 + [K] AraC-type DNA-binding domain-containing proteins 53 yabI CDS COG0586 122604 123371 + [S] Uncharacterized membrane-associated protein 54 yabJ CDS COG3840 123410 124117 - [H] ABC-type thiamine transport system, ATPase component yabK CDS COG1178 124101 125711 - [P] ABC-type Fe3+ transport system, permease component tbpA CDS COG4143 125687 126670 - [H] ABC-type thiamine transport system, periplasmic component yabN CDS COG4533 126848 128506 - [R] ABC-type uncharacterized transport system, periplasmic component 55 leuD CDS COG0066 129057 129662 - [E] 3-isopropylmalate dehydratase small subunit leuC CDS COG0065 129673 131073 - [E] 3-isopropylmalate dehydratase large subunit leuB CDS COG0473 131076 132167 - [CE] Isocitrate/isopropylmalate dehydrogenase leuA CDS COG0119 132167 133738 - [E] Isopropylmalate/homocitrate/citramalate synthases 56 leuL CDS NA 133826 133912 - NA 57 leuO CDS COG0583 134569 135513 + [K] Transcriptional regulator 58 ilvI CDS COG0028 135898 137559 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate ilvH CDS COG0440 137562 138053 + [E] Acetolactate synthase, small (regulatory) subunit 59 fruR CDS COG1609 138337 139341 + [K] Transcriptional regulators 60 yabB CDS COG2001 139947 140405 + [S] Uncharacterized protein conserved in bacteria yabC CDS COG0275 140407 141348 + [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in cell ftsL CDS COG3116 141345 141710 + [D] Cell division protein ftsI CDS COG0768 141726 143492 + [M] Cell division protein FtsI/penicillin-binding protein 2 murE CDS COG0769 143479 144966 + [M] UDP-N-acetylmuramyl tripeptide synthase murF CDS COG0770 144963 146321 + [M] UDP-N-acetylmuramyl pentapeptide synthase mraY CDS COG0472 146315 147397 + [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase murD CDS COG0771 147400 148716 + [M] UDP-N-acetylmuramoylalanine-D-glutamate ligase ftsW CDS COG0772 148716 149960 + [D] Bacterial cell division membrane protein murG CDS COG0707 149957 151024 + [M] UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase murC CDS COG0773 151143 152618 + [M] UDP-N-acetylmuramate-alanine ligase ddlB CDS COG1181 152611 153531 + [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes ftsQ CDS COG1589 153533 154363 + [M] Cell division septal protein ftsA CDS COG0849 154360 155622 + [D] Actin-like ATPase involved in cell division ftsZ CDS COG0206 155683 156834 + [D] Cell division GTPase lpxC CDS COG0774 156935 157852 + [M] UDP-3-O-acyl-N-acetylglucosamine deacetylase 61 yacA CDS NA 158199 158627 + NA secA CDS COG0653 158689 161394 + [U] Preprotein translocase subunit SecA (ATPase, RNA mutT CDS COG0494 161546 161941 + [LR] NTP pyrophosphohydrolases including oxidative damage repair 62 yacG CDS COG3024 162263 162454 - [S] Uncharacterized protein conserved in bacteria yacF CDS COG4582 162464 163207 - [S] Uncharacterized protein conserved in bacteria yacE CDS COG0237 163207 163827 - [H] Dephospho-CoA kinase 63 guaC CDS COG0516 164053 165096 + [F] IMP dehydrogenase/GMP reductase 64 hofC CDS COG1459 165127 166329 - [NU] Type II secretory pathway, component PulF hofB CDS COG2804 166319 167704 - [NU] Type II secretory pathway, ATPase PulE/Tfp ppdD CDS COG4969 167714 168151 - [NU] Tfp pilus assembly protein, major pilin 65 nadC CDS COG0157 168373 169266 - [H] Nicotinate-nucleotide pyrophosphorylase 66 ampD CDS COG3023 169354 169917 + [V] Negative regulator of beta-lactamase expression ampE CDS COG3725 169914 170768 + [V] Membrane protein required for beta-lactamase induction 67 cds-NP_459153.1 CDS COG3940 170860 171810 - [R] Predicted beta-xylosidase cds-NP_459154.1 CDS COG2211 171810 173216 - [G] Na+/melibiose symporter and related transporters 68 aroP CDS COG1113 173380 174753 - [E] Gamma-aminobutyrate permease and related permeases 69 pdhR CDS COG2186 175316 176080 + [K] Transcriptional regulators aceE CDS COG2609 176240 178903 + [C] Pyruvate dehydrogenase complex, dehydrogenase (E1) component aceF CDS COG0508 178918 180807 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) lpdA CDS COG1249 181007 182431 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 70 cds-NP_459160.1 CDS NA 182720 183004 + NA 71 cds-NP_459161.1 CDS ROG0521 183042 183833 - NA yacH CDS ROG0224 183846 185468 - NA 72 acnB CDS COG1049 185857 188454 + [C] Aconitase B 73 cds-NP_459164.1 CDS COG3183 188515 189357 - [V] Predicted restriction endonuclease 74 yacL CDS COG3112 189603 189965 + [S] Uncharacterized protein conserved in bacteria 75 kdgT CDS ROG0711 190200 191153 + NA cds-NP_459167.1 CDS COG3395 191150 192421 + [S] Uncharacterized protein conserved in bacteria cds-NP_459168.1 CDS COG1995 192411 193394 + [H] Pyridoxal phosphate biosynthesis protein cds-NP_459169.1 CDS COG1349 193404 194171 + [KG] Transcriptional regulators of sugar metabolism 76 speD CDS COG1586 194201 194995 - [E] S-adenosylmethionine decarboxylase speE CDS COG0421 195016 195876 - [E] Spermidine synthase 77 yacC CDS NA 195983 196330 - NA 78 cueO CDS COG2132 196532 198142 + [Q] Putative multicopper oxidases 79 gcd CDS COG4993 198220 200610 - [G] Glucose dehydrogenase 80 hpt CDS COG0634 200816 201352 + [F] Hypoxanthine-guanine phosphoribosyltransferase 81 yadF CDS COG0288 201410 202072 - [P] Carbonic anhydrase 82 yadG CDS COG1131 202181 203107 + [V] ABC-type multidrug transport system, ATPase component yadH CDS COG0842 203104 203874 + [V] ABC-type multidrug transport system, permease component 83 stiH CDS COG3539 203991 205070 - [NU] P pilus assembly protein, pilin FimA stiC CDS COG3188 205079 207625 - [NU] P pilus assembly protein, porin PapC stiB CDS COG3121 207652 208335 - [NU] P pilus assembly protein, chaperone PapD stiA CDS COG3539 208383 208922 - [NU] P pilus assembly protein, pilin FimA 84 yadI CDS COG2893 209293 209733 + [G] Phosphotransferase system, mannose/fructose-specific component IIA 85 yadE CDS COG0726 209795 211024 + [G] Predicted xylanase/chitin deacetylase 86 panD CDS COG0853 211031 211411 - [H] Aspartate 1-decarboxylase panC CDS COG0414 211506 212360 - [H] Panthothenate synthetase panB CDS COG0413 212486 213277 - [H] Ketopantoate hydroxymethyltransferase folK CDS COG0801 213398 213877 - [H] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase pcnB CDS COG0617 213874 215292 - [J] tRNA nucleotidyltransferase/poly(A) polymerase yadB CDS COG0008 215433 216374 - [J] Glutamyl- and glutaminyl-tRNA synthetases dksA CDS COG1734 216398 216853 - [T] DnaK suppressor protein 87 sfsA CDS COG1489 217030 217734 - [R] DNA-binding protein, stimulates sugar fermentation ligT CDS COG1514 217751 218281 - [J] 2'-5' RNA ligase 88 hrpB CDS COG1643 218309 220783 + [L] HrpA-like helicases 89 mrcB CDS COG0744 220924 223446 + [M] Membrane carboxypeptidase (penicillin-binding protein) 90 fhuA CDS COG1629 223739 225928 + [P] Outer membrane receptor proteins, mostly Fe fhuC CDS COG1120 225977 226774 + [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fhuD CDS COG0614 226774 227664 + [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component fhuB CDS COG0609 227661 229718 + [P] ABC-type Fe3+-siderophore transport system, permease component 91 stfA CDS COG3539 230658 231218 + [NU] P pilus assembly protein, pilin FimA stfC CDS COG3188 231304 233961 + [NU] P pilus assembly protein, porin PapC stfD CDS COG3121 233979 234731 + [NU] P pilus assembly protein, chaperone PapD stfE CDS COG3539 234750 235262 + [NU] P pilus assembly protein, pilin FimA stfF CDS COG3539 235259 235735 + [NU] P pilus assembly protein, pilin FimA stfG CDS COG3539 235735 236265 + [NU] P pilus assembly protein, pilin FimA cds-NP_459206.1 CDS NA 236265 237104 + NA 92 hemL CDS COG0001 237212 238492 - [H] Glutamate-1-semialdehyde aminotransferase 93 yadQ CDS COG0038 238662 240083 + [P] Chloride channel protein EriC yadR CDS COG0316 240120 240509 + [S] Uncharacterized conserved protein 94 yadS CDS COG2860 240610 241233 - [S] Predicted membrane protein btuF CDS COG0614 241270 242070 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component pfs CDS COG0775 242063 242761 - [F] Nucleoside phosphorylase 95 dgt CDS COG0232 242846 244363 + [F] dGTP triphosphohydrolase 96 htrA CDS COG0265 244493 245920 + [O] Trypsin-like serine proteases, typically periplasmic, contain 97 cdaR CDS COG3835 246073 247230 + [KT] Sugar diacid utilization regulator 98 yaeH CDS ROG5092 247319 247705 - NA 99 cds-NP_459217.1 CDS COG0477 247952 249253 + [GEPR] Permeases of the major facilitator superfamily 100 dapD CDS COG2171 249290 250114 - [E] Tetrahydrodipicolinate N-succinyltransferase glnD CDS COG2844 250144 252816 - [O] UTP:GlnB (protein PII) uridylyltransferase 101 map CDS COG0024 253053 253847 - [J] Methionine aminopeptidase 102 rpsB CDS COG0052 254298 255023 + [J] Ribosomal protein S2 tsf CDS COG0264 255281 256132 + [J] Translation elongation factor Ts pyrH CDS COG0528 256277 257002 + [F] Uridylate kinase frr CDS COG0233 257149 257706 + [J] Ribosome recycling factor dxr CDS COG0743 257847 259043 + [I] 1-deoxy-D-xylulose 5-phosphate reductoisomerase uppS CDS COG0020 259356 260114 + [I] Undecaprenyl pyrophosphate synthase cdsA CDS COG0575 260127 260984 + [I] CDP-diglyceride synthetase yaeL CDS COG0750 260996 262348 + [M] Predicted membrane-associated Zn-dependent proteases 1 yaeT CDS COG4775 262380 264794 + [M] Outer membrane protein/protective antigen OMA87 hlpA CDS COG2825 264917 265402 + [M] Outer membrane protein lpxD CDS COG1044 265406 266431 + [M] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase fabZ CDS COG0764 266537 266992 + [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases lpxA CDS COG1043 266996 267784 + [M] Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase lpxB CDS COG0763 267784 268932 + [M] Lipid A disaccharide synthetase rnhB CDS COG0164 268929 269525 + [L] Ribonuclease HII dnaE CDS COG0587 269549 273031 + [L] DNA polymerase III, alpha subunit accA CDS COG0825 273044 274003 + [I] Acetyl-CoA carboxylase alpha subunit 103 cds-NP_459238.1 CDS COG3979 274184 275947 + [R] Uncharacterized protein contain chitin-binding domain type ldcC CDS COG1982 276023 278164 + [E] Arginine/lysine/ornithine decarboxylases yaeR CDS COG0346 278220 278609 + [E] Lactoylglutathione lyase and related lyases 104 mesJ CDS COG0037 278672 279964 + [D] Predicted ATPase of the PP-loop superfamily 105 rof CDS COG4568 280048 280308 - [K] Transcriptional antiterminator yaeP CDS NA 280295 280513 - NA 106 yaeQ CDS COG4681 280693 281238 + [S] Uncharacterized protein conserved in bacteria yaeJ CDS COG1186 281235 281657 + [J] Protein chain release factor B 107 proS CDS COG0442 282468 284186 - [J] Prolyl-tRNA synthetase yaeB CDS COG1720 284297 285004 - [S] Uncharacterized conserved protein rcsF CDS ROG4703 285001 285405 - NA 108 yaeC CDS COG1464 285524 286339 - [P] ABC-type metal ion transport system, periplasmic yaeE CDS COG2011 286378 287031 - [P] ABC-type metal ion transport system, permease abc CDS COG1135 287024 288055 - [P] ABC-type metal ion transport system, ATPase 109 yaeD CDS COG0241 288245 288811 + [E] Histidinol phosphatase and related phosphatases 110 rrsH rRNA NA 289190 290733 + NA ileV tRNA NA 290801 290874 + NA alaV tRNA NA 290987 291059 + NA rrlH rRNA NA 291245 294337 + NA rrfH rRNA NA 294520 294641 + NA aspU tRNA NA 294839 294912 + NA 111 yafB CDS COG0656 295070 295873 + [R] Aldo/keto reductases, related to diketogulonate reductase 112 yafC CDS COG0583 295894 296808 - [K] Transcriptional regulator 113 cds-NP_459255.1 CDS COG2814 296913 298088 + [G] Arabinose efflux permease 114 yafD CDS COG3021 298241 299020 + [S] Uncharacterized protein conserved in bacteria 115 yafE CDS COG0500 299098 299868 + [QR] SAM-dependent methyltransferases 116 dniR CDS COG1388 299924 301291 - [M] FOG: LysM repeat 117 gloB CDS COG0491 301363 302118 - [R] Zn-dependent hydrolases, including glyoxylases 118 yafS CDS COG0500 302153 302875 + [QR] SAM-dependent methyltransferases 119 rnhA CDS COG0328 302872 303339 - [L] Ribonuclease HI 120 dnaQ CDS COG0847 303403 304134 + [L] DNA polymerase III, epsilon subunit and 121 aspV tRNA NA 304278 304351 + NA 122 cds-NP_459263.1 CDS COG3515 304666 305721 - [S] Uncharacterized protein conserved in bacteria cds-NP_459264.1 CDS COG3520 305732 306727 - [S] Uncharacterized protein conserved in bacteria cds-NP_459265.1 CDS COG3519 306724 308607 - [S] Uncharacterized protein conserved in bacteria cds-NP_459266.1 CDS COG3518 308623 309117 - [S] Uncharacterized protein conserved in bacteria cds-NP_459267.1 CDS COG4455 309114 309938 - [R] Protein of avirulence locus involved in cds-NP_459268.1 CDS NA 309925 310827 - NA 123 cds-NP_459269.1 CDS COG0542 311195 313834 + [O] ATPases with chaperone activity, ATP-binding subunit cds-NP_459270.1 CDS COG3516 313934 314476 + [S] Uncharacterized protein conserved in bacteria cds-NP_459271.1 CDS COG3517 314500 316008 + [S] Uncharacterized protein conserved in bacteria 124 cds-NP_459272.1 CDS NA 316071 316181 + NA 125 cds-NP_459273.3 CDS NA 316308 316640 + NA 126 cds-NP_459274.1 CDS COG3157 316894 317379 + [S] Hemolysin-coregulated protein (uncharacterized) 127 cds-NP_459275.1 CDS NA 317684 318169 + NA cds-NP_459276.1 CDS NA 318154 318537 + NA 128 cds-NP_459277.1 CDS COG3157 318680 319165 + [S] Hemolysin-coregulated protein (uncharacterized) cds-NP_459278.1 CDS COG3521 319232 319768 + [S] Uncharacterized protein conserved in bacteria cds-NP_459279.1 CDS COG3522 319772 321115 + [S] Uncharacterized protein conserved in bacteria cds-NP_459280.1 CDS COG3455 321112 322416 + [S] Uncharacterized protein conserved in bacteria cds-NP_459281.1 CDS COG2244 322421 323194 + [R] Membrane protein involved in the export 129 cds-NP_459282.1 CDS NA 323397 323828 + NA cds-NP_459283.1 CDS COG3523 323862 327731 + [S] Uncharacterized protein conserved in bacteria cds-NP_459284.1 CDS COG3913 327731 328519 + [S] Uncharacterized protein conserved in bacteria cds-NP_459285.1 CDS COG4893 328516 328932 + [S] Uncharacterized protein conserved in bacteria cds-NP_459286.1 CDS NA 328956 329477 + NA 130 cds-NP_459287.1 CDS COG3501 329874 332063 + [S] Uncharacterized protein conserved in bacteria cds-NP_459288.1 CDS COG5435 332087 332533 + [S] Uncharacterized conserved protein cds-NP_459289.1 CDS COG3209 332552 336646 + [M] Rhs family protein cds-NP_459290.1 CDS COG3209 337096 337836 + [M] Rhs family protein cds-NP_459291.1 CDS NA 337830 338276 + NA 131 cds-NP_459292.1 CDS ROG8497 338839 339276 + NA 132 cds-NP_459293.1 CDS NA 340045 340353 + NA 133 cds-NP_446753.1 CDS NA 340455 340703 - NA 134 safA CDS NA 342210 342722 + NA 135 safB CDS COG3121 342830 343543 + [NU] P pilus assembly protein, chaperone PapD safC CDS COG3188 343567 346077 + [NU] P pilus assembly protein, porin PapC safD CDS NA 346099 346569 + NA 136 ybeJ CDS ROG4852 346975 347796 + NA 137 sinR CDS COG0583 348611 349558 + [K] Transcriptional regulator 138 cds-NP_459303.1 CDS NA 349675 349890 + NA 139 cds-NP_459304.1 CDS COG3637 349894 350613 - [M] Opacity protein and related surface antigens 140 cds-NP_459305.1 CDS COG3678 350944 351351 - [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 141 yafV CDS COG0388 351722 352489 - [R] Predicted amidohydrolase yafH CDS COG1960 352598 355042 - [I] Acyl-CoA dehydrogenases 142 ghmA CDS COG0279 355282 355860 + [G] Phosphoheptose isomerase 143 yafJ CDS COG0121 356073 356840 + [R] Predicted glutamine amidotransferase 144 yafK CDS COG3034 356811 357551 - [S] Uncharacterized protein conserved in bacteria 145 dinP CDS COG0389 357801 358856 + [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair 146 prfH CDS COG1186 360204 360818 + [J] Protein chain release factor B 147 pepD CDS COG2195 360974 362431 - [E] Di- and tripeptidases 148 gpt CDS COG2236 362680 363138 + [R] Predicted phosphoribosyltransferases 149 yafA CDS COG3131 363227 364471 + [P] Periplasmic glucans biosynthesis protein crl CDS NA 364529 364930 + NA 150 phoE CDS COG3203 364981 366033 - [M] Outer membrane protein (porin) 151 proB CDS COG0263 366316 367419 + [E] Glutamate 5-kinase proA CDS COG0014 367431 368681 + [E] Gamma-glutamyl phosphate reductase 152 thrW tRNA NA 368807 368879 + NA 153 cds-NP_446779.1 CDS NA 369159 369380 + NA 154 cds-NP_459321.1 CDS COG2801 369198 369998 - [L] Transposase and inactivated derivatives 155 cds-NP_459322.1 CDS COG0272 370740 371063 + [L] NAD-dependent DNA ligase (contains BRCT domain 156 cds-NP_459323.3 CDS COG0477 371404 372642 + [GEPR] Permeases of the major facilitator superfamily 157 cds-NP_459324.1 CDS COG0065 372774 374195 + [E] 3-isopropylmalate dehydratase large subunit cds-NP_459325.1 CDS COG0066 374197 374823 + [E] 3-isopropylmalate dehydratase small subunit cds-NP_459326.1 CDS COG0179 374838 375716 + [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) cds-NP_459327.1 CDS COG0596 375716 376630 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase cds-NP_459328.1 CDS COG0583 376664 377629 + [K] Transcriptional regulator 158 cds-NP_459329.1 CDS ROG4582 377574 377846 - NA 159 cds-NP_459330.1 CDS NA 378537 378935 + NA 160 stbE CDS COG3121 378982 379740 - [NU] P pilus assembly protein, chaperone PapD stbD CDS COG3539 379706 381031 - [NU] P pilus assembly protein, pilin FimA stbC CDS COG3188 381036 383597 - [NU] P pilus assembly protein, porin PapC stbB CDS COG3121 383581 384342 - [NU] P pilus assembly protein, chaperone PapD stbA CDS COG3539 384404 384940 - [NU] P pilus assembly protein, pilin FimA 161 cds-NP_459336.1 CDS COG3710 385574 386338 + [K] DNA-binding winged-HTH domains cds-NP_459337.1 CDS NA 386311 386610 + NA 162 cds-NP_459338.1 CDS COG2200 387110 388684 + [T] FOG: EAL domain 163 cds-NP_459339.1 CDS COG3710 388784 389527 + [K] DNA-binding winged-HTH domains cds-NP_459340.1 CDS NA 389500 389988 + NA 164 cds-NP_459341.1 CDS COG3637 390389 390913 + [M] Opacity protein and related surface antigens 165 cds-NP_459342.1 CDS NA 391057 391698 + NA cds-NP_459343.1 CDS NA 391709 391933 + NA cds-NP_459344.1 CDS ROG5059 391991 392350 + NA 166 cds-NP_459345.3 CDS COG1538 392420 393931 - [MU] Outer membrane protein cds-NP_459346.1 CDS COG0841 393894 397061 - [V] Cation/multidrug efflux pump cds-NP_459347.3 CDS COG0845 397058 398284 - [M] Membrane-fusion protein 167 cds-NP_459348.1 CDS COG2217 398561 400849 + [P] Cation transport ATPase cds-NP_459349.1 CDS COG0789 400861 401325 + [K] Predicted transcriptional regulators 168 cds-NP_459350.1 CDS COG2608 401403 401597 + [P] Copper chaperone 169 cds-NP_459351.1 CDS COG0477 401890 403143 + [GEPR] Permeases of the major facilitator superfamily 170 mod CDS COG2189 403332 405290 + [L] Adenine specific DNA methylase Mod res CDS COG3587 405300 408272 + [V] Restriction endonuclease 171 cds-NP_459354.1 CDS NA 408549 408650 + NA 172 cds-NP_459355.1 CDS COG1271 408767 410170 + [C] Cytochrome bd-type quinol oxidase, subunit 1 cds-NP_459356.1 CDS COG1294 410167 411177 + [C] Cytochrome bd-type quinol oxidase, subunit 2 cds-NP_459357.2 CDS NA 411177 411308 + NA 173 cds-NP_459358.1 CDS COG2207 411514 412518 + [K] AraC-type DNA-binding domain-containing proteins foxA CDS COG1629 412664 414772 + [P] Outer membrane receptor proteins, mostly Fe 174 yahN CDS COG1280 414813 415445 - [E] Putative threonine efflux protein 175 yahO CDS NA 415677 415952 + NA 176 prpR CDS COG1221 416088 417713 - [KT] Transcriptional regulators containing an AAA-type ATPase 177 prpB CDS COG2513 417978 418865 + [G] PEP phosphonomutase and related enzymes prpC CDS COG0372 418988 420157 + [C] Citrate synthase prpD CDS COG2079 420197 421648 + [R] Uncharacterized protein involved in propionate catabolism prpE CDS COG0365 421689 423575 + [I] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 178 hemB CDS COG0113 423679 424653 - [H] Delta-aminolevulinic acid dehydratase 179 yaiU CDS COG3468 425166 428102 + [MU] Type V secretory pathway, adhesin AidA 180 yaiV CDS NA 428188 428811 + NA 181 ampH CDS COG1680 428856 429986 - [V] Beta-lactamase class C and other penicillin 182 sbmA CDS COG1133 430360 431580 + [I] ABC-type long-chain fatty acid transport system, yaiW CDS ROG1186 431595 432689 + NA 183 yaiY CDS NA 432727 433035 - NA 184 yaiZ CDS NA 433303 433518 + NA 185 ddlA CDS COG1181 433544 434638 - [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes 186 cds-NP_459376.1 CDS COG3921 434716 435429 + [S] Uncharacterized protein conserved in bacteria 187 cds-NP_459377.1 CDS ROG2472 435598 436809 + NA 188 yaiB CDS ROG2546 437100 437366 + NA 189 psiF CDS ROG1291 437718 438038 + NA 190 yaiC CDS COG3706 438130 439242 + [T] Response regulator containing a CheY-like receiver 191 proC CDS COG0345 439257 440066 - [E] Pyrroline-5-carboxylate reductase 192 yaiI CDS COG1671 440206 440661 + [S] Uncharacterized protein conserved in bacteria 193 aroL CDS COG0703 440846 441391 + [E] Shikimate kinase yaiA CDS NA 441418 441609 + NA 194 aroM CDS ROG4371 441860 442537 + NA 195 yaiE CDS COG3123 442608 442892 + [S] Uncharacterized protein conserved in bacteria 196 rdgC CDS COG2974 442930 443841 - [L] DNA recombination-dependent growth factor C 197 yajF CDS COG1940 443967 444875 + [KG] Transcriptional regulator/sugar kinase 198 araJ CDS COG2814 444897 446069 - [G] Arabinose efflux permease 199 sbcC CDS COG0419 446242 449382 - [L] ATPase involved in DNA repair sbcD CDS COG0420 449379 450581 - [L] DNA repair exonuclease 200 phoB CDS COG0745 450796 451485 + [TK] Response regulators consisting of a CheY-like phoR CDS COG0642 451555 452850 + [T] Signal transduction histidine kinase 201 brnQ CDS COG1114 453259 454578 + [E] Branched-chain amino acid permeases proY CDS COG1113 454653 456023 + [E] Gamma-aminobutyrate permease and related permeases 202 malZ CDS COG0366 456185 458002 + [G] Glycosidases 203 cds-NP_459397.1 CDS COG0450 458074 458676 - [O] Peroxiredoxin 204 yajB CDS COG3124 458886 459467 - [S] Uncharacterized protein conserved in bacteria 205 queA CDS COG0809 459561 460625 + [J] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) tgt CDS COG0343 460822 461949 + [J] Queuine/archaeosine tRNA-ribosyltransferase yajC CDS COG1862 461972 462304 + [U] Preprotein translocase subunit YajC secD CDS COG0342 462332 464179 + [U] Preprotein translocase subunit SecD secF CDS COG0341 464190 465161 + [U] Preprotein translocase subunit SecF 206 cds-NP_459404.1 CDS COG3324 465309 465674 + [R] Predicted enzyme related to lactoylglutathione lyase cds-NP_459405.1 CDS COG2378 465700 466392 + [K] Predicted transcriptional regulator 207 yajD CDS ROG0341 466562 466909 + NA 208 cds-NP_446866.1 CDS NA 467157 467483 - NA tsx CDS COG3248 467538 468401 - [M] Nucleoside-binding outer membrane protein 209 yajI CDS ROG7933 468701 469240 - NA 210 ybaD CDS COG1327 469392 469841 + [K] Predicted transcriptional regulator, consists of a ribD CDS COG1985 469845 470948 + [H] Pyrimidine reductase, riboflavin biosynthesis ribH CDS COG0054 471037 471507 + [H] Riboflavin synthase beta-chain nusB CDS COG0781 471528 471947 + [K] Transcription termination factor thiL CDS COG0611 472026 473003 + [H] Thiamine monophosphate kinase pgpA CDS COG1267 472981 473496 + [I] Phosphatidylglycerophosphatase A and related proteins 211 yajO CDS COG0667 473600 474574 - [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 212 dxs CDS COG1154 474631 476493 - [HI] Deoxyxylulose-5-phosphate synthase ispA CDS COG0142 476517 477416 - [H] Geranylgeranyl pyrophosphate synthase xseB CDS COG1722 477417 477659 - [L] Exonuclease VII small subunit 213 thiI CDS COG0301 477869 479317 + [H] Thiamine biosynthesis ATP pyrophosphatase 214 phnV CDS COG1178 479361 480158 - [P] ABC-type Fe3+ transport system, permease component phnU CDS COG0555 480161 481021 - [O] ABC-type sulfate transport system, permease component phnT CDS COG3842 481024 482133 - [E] ABC-type spermidine/putrescine transport systems, ATPase components phnS CDS COG1840 482139 483152 - [P] ABC-type Fe3+ transport system, periplasmic component 215 phnR CDS COG2188 483350 484069 - [K] Transcriptional regulators 216 phnW CDS COG0075 484209 485312 + [E] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase phnX CDS COG0637 485319 486131 + [R] Predicted phosphatase/phosphohexomutase 217 thiJ CDS COG0693 486228 486818 - [R] Putative intracellular protease/amidase apbA CDS COG1893 486781 487692 - [H] Ketopantoate reductase 218 yajQ CDS COG1666 487800 488309 + [S] Uncharacterized protein conserved in bacteria 219 yajR CDS COG0477 488356 489705 - [GEPR] Permeases of the major facilitator superfamily 220 cds-NP_446891.1 CDS NA 489948 490109 - NA 221 cds-NP_459433.1 CDS COG0790 490257 491768 + [R] FOG: TPR repeat, SEL1 subfamily cds-NP_459434.1 CDS COG0790 491990 493273 + [R] FOG: TPR repeat, SEL1 subfamily 222 cyoE CDS COG0109 493355 494245 - [O] Polyprenyltransferase (cytochrome oxidase assembly factor) cyoD CDS COG3125 494257 494586 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 4 cyoC CDS COG1845 494586 495200 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 3 cyoB CDS COG0843 495190 497181 - [C] Heme/copper-type cytochrome/quinol oxidases, subunit 1 cyoA CDS COG1622 497192 498148 - [C] Heme/copper-type cytochrome/quinol oxidases, subunit 2 223 ampG CDS NA 498601 500076 - NA yajG CDS COG3056 500120 500752 - [M] Uncharacterized lipoprotein 224 bolA CDS COG0271 501002 501319 + [T] Stress-induced morphogen (activity unknown) 225 tig CDS COG0544 501666 502964 + [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) clpP CDS COG0740 503211 503834 + [OU] Protease subunit of ATP-dependent Clp proteases clpX CDS COG1219 504086 505357 + [O] ATP-dependent protease Clp, ATPase subunit lon CDS COG0466 505543 507897 + [O] ATP-dependent Lon protease, bacterial type 226 hupB CDS COG0776 508106 508378 + [L] Bacterial nucleoid DNA-binding protein 227 cypD CDS COG0760 508669 510540 + [O] Parvulin-like peptidyl-prolyl isomerase 228 ybaV CDS COG1555 510690 511064 + [L] DNA uptake protein and related DNA-binding 229 ybaW CDS COG0824 511168 511566 + [R] Predicted thioesterase 230 ybaX CDS COG0603 511672 512367 - [R] Predicted PP-loop superfamily ATPase 231 ybaE CDS COG4533 512432 514132 - [R] ABC-type uncharacterized transport system, periplasmic component 232 cof CDS COG0561 514233 515051 + [R] Predicted hydrolases of the HAD superfamily 233 cds-NP_459454.1 CDS COG0031 515101 516156 - [E] Cysteine synthase 234 ybaO CDS COG1522 516269 516727 + [K] Transcriptional regulators mdlA CDS COG1132 516768 518540 + [V] ABC-type multidrug transport system, ATPase and mdlB CDS COG1132 518533 520314 + [V] ABC-type multidrug transport system, ATPase and 235 glnK CDS COG0347 520527 520865 + [E] Nitrogen regulatory protein PII amtB CDS COG0004 520897 522183 + [P] Ammonia permease 236 tesB CDS COG1946 522283 523143 - [I] Acyl-CoA thioesterase 237 ybaY CDS COG3126 523358 523927 + [S] Uncharacterized protein conserved in bacteria 238 ybaZ CDS COG3695 523960 524349 - [L] Predicted methylated DNA-protein cysteine methyltransferase 239 ylaB CDS COG4943 524580 526130 - [T] Predicted signal transduction protein containing sensor 240 rpmE2 CDS COG0254 526355 526615 + [J] Ribosomal protein L31 rpmJ2 CDS COG0257 526621 526761 + [J] Ribosomal protein L36 241 ylaC CDS NA 526817 527287 - NA 242 maa CDS COG0110 527404 527955 - [R] Acetyltransferase (isoleucine patch superfamily) 243 hha CDS NA 528134 528352 - NA ybaJ CDS NA 528380 528754 - NA 244 acrB CDS COG0841 529250 532399 - [V] Cation/multidrug efflux pump acrA CDS COG0845 532422 533615 - [M] Membrane-fusion protein 245 acrR CDS COG1309 533757 534410 + [K] Transcriptional regulator 246 aefA CDS COG3264 534529 537891 + [M] Small-conductance mechanosensitive channel 247 cds-NP_459474.1 CDS COG5464 537933 538868 - [S] Uncharacterized conserved protein 248 ybaM CDS NA 538938 539105 - NA priC CDS COG3923 539119 539634 - [L] Primosomal replication protein N'' 249 ybaN CDS COG2832 539715 540092 + [S] Uncharacterized protein conserved in bacteria 250 apt CDS COG0503 540245 540796 + [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins dnaX CDS COG2812 540910 542838 + [L] DNA polymerase III, gamma/tau subunits ybaB CDS COG0718 542884 543213 + [S] Uncharacterized protein conserved in bacteria recR CDS COG0353 543213 543818 + [L] Recombinational DNA repair protein (RecF pathway) htpG CDS COG0326 543905 545803 + [O] Molecular chaperone, HSP90 family 251 adk CDS COG0563 546044 546688 + [F] Adenylate kinase and related kinases 252 hemH CDS COG0276 546917 547879 + [H] Protoheme ferro-lyase (ferrochelatase) 253 aes CDS COG0657 547876 548847 - [I] Esterase/lipase 254 gsk CDS COG0524 549000 550304 + [G] Sugar kinases, ribokinase family 255 ybaL CDS COG4651 550353 552029 - [P] Kef-type K+ transport system, predicted NAD-binding 256 fsr CDS NA 552244 553464 - NA 257 ushA CDS COG0737 553637 555289 + [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 258 ybaK CDS COG2606 555406 555885 - [S] Uncharacterized conserved protein 259 ybaP CDS COG3735 556087 556881 - [S] Uncharacterized protein conserved in bacteria 260 cds-NP_459492.1 CDS NA 556967 557794 - NA 261 copA CDS COG2217 557948 560449 - [P] Cation transport ATPase 262 cueR CDS COG0789 560559 560975 + [K] Predicted transcriptional regulators 263 ybbJ CDS COG1585 560976 561428 - [OU] Membrane protein implicated in regulation of ybbK CDS COG0330 561425 562342 - [O] Membrane protease subunits, stomatin/prohibitin homologs 264 ybbL CDS COG4619 562489 563166 + [R] ABC-type uncharacterized transport system, ATPase component ybbM CDS COG0390 563153 563932 + [R] ABC-type uncharacterized transport system, permease component 265 ybbN CDS COG3118 564018 564872 - [O] Thioredoxin domain-containing protein ybbO CDS COG0300 564932 565702 - [R] Short-chain dehydrogenases of various substrate specificities 266 tesA CDS COG2755 565857 566471 - [E] Lysophospholipase L1 and related esterases 267 ybbA CDS COG4181 566442 567128 + [Q] Predicted ABC-type transport system involved in ybbP CDS COG3127 567125 569539 + [Q] Predicted ABC-type transport system involved in 268 cds-NP_459504.1 CDS COG3203 569725 570858 + [M] Outer membrane protein (porin) 269 sfbA CDS COG1464 571115 571945 + [P] ABC-type metal ion transport system, periplasmic sfbB CDS COG1135 571982 572998 + [P] ABC-type metal ion transport system, ATPase sfbC CDS COG2011 572991 573650 + [P] ABC-type metal ion transport system, permease 270 ybbB CDS COG2603 573689 574783 - [R] Predicted ATPase 271 ybbS CDS COG0583 574853 575779 - [K] Transcriptional regulator 272 allA CDS COG3194 576006 576488 + [F] Ureidoglycolate hydrolase 273 allR CDS COG1414 576567 577385 + [K] Transcriptional regulator gcl CDS COG3960 577470 579251 + [R] Glyoxylate carboligase gip CDS COG3622 579264 580040 + [G] Hydroxypyruvate isomerase glxR CDS COG2084 580141 581019 + [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases cds-NP_459515.1 CDS COG0477 581085 582332 + [GEPR] Permeases of the major facilitator superfamily 274 ybbV CDS NA 582408 582662 + NA allP CDS COG1953 582569 583882 + [FH] Cytosine/uracil/thiamine/allantoin permeases allB CDS COG0044 583961 585322 + [F] Dihydroorotase and related cyclic amidohydrolases ybbY CDS NA 585381 586679 + NA glxK CDS COG1929 586702 587850 + [G] Glycerate kinase 275 ylbA CDS COG3257 587930 588715 - [R] Uncharacterized protein, possibly involved in glyoxylate allC CDS COG0624 588726 589961 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases allD CDS COG2055 589983 591032 - [C] Malate/L-lactate dehydrogenases 276 fdrA CDS COG0074 591363 593027 + [C] Succinyl-CoA synthetase, alpha subunit ylbE CDS ROG1330 593037 594296 + NA ylbF CDS NA 594308 595117 + NA arcC CDS COG0549 595121 596014 + [E] Carbamate kinase 277 purK CDS COG0026 596055 597122 - [F] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) purE CDS COG0041 597119 597628 - [F] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 278 lpxH CDS COG2908 597746 598468 - [S] Uncharacterized protein conserved in bacteria ppiB CDS COG0652 598471 598965 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 279 cysS CDS COG0215 599138 600523 + [J] Cysteinyl-tRNA synthetase 280 cds-NP_459533.1 CDS COG4727 600567 601391 - [S] Uncharacterized protein conserved in bacteria cds-NP_459534.1 CDS ROG2333 601388 601825 - NA ybcI CDS COG1988 601818 602363 - [R] Predicted membrane-bound metal-dependent hydrolases 281 ybcJ CDS COG2501 602491 602703 - [S] Uncharacterized conserved protein folD CDS COG0190 602705 603571 - [H] 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 282 fimA CDS COG3539 604118 604675 + [NU] P pilus assembly protein, pilin FimA fimI CDS COG3539 604751 605284 + [NU] P pilus assembly protein, pilin FimA fimC CDS COG3121 605328 606020 + [NU] P pilus assembly protein, chaperone PapD fimD CDS COG3188 606051 608663 + [NU] P pilus assembly protein, porin PapC fimH CDS COG3539 608678 609685 + [NU] P pilus assembly protein, pilin FimA fimF CDS COG3539 609695 610213 + [NU] P pilus assembly protein, pilin FimA 283 fimZ CDS COG2197 610259 610891 - [TK] Response regulator containing a CheY-like receiver 284 fimY CDS ROG7279 611495 612217 - NA cds-NP_459546.1 CDS COG2200 612236 612547 - [T] FOG: EAL domain fimW CDS COG2771 612709 613305 - [K] DNA-binding HTH domain-containing proteins 285 argU tRNA NA 613570 613643 + NA 286 cds-NP_459548.1 CDS NA 613596 613784 - NA 287 cds-NP_459550.1 CDS NA 614807 616459 - NA yfdH CDS COG0463 616440 617366 - [M] Glycosyltransferases involved in cell wall biogenesis rfbI CDS COG2246 617363 617725 - [S] Predicted membrane protein 288 cds-NP_459553.1 CDS COG5002 618593 618922 - [T] Signal transduction histidine kinase 289 cds-NP_447013.1 CDS COG3696 619031 619210 + [P] Putative silver efflux pump 290 cds-NP_459555.1 CDS COG2207 619261 620115 - [K] AraC-type DNA-binding domain-containing proteins 291 cds-NP_459556.1 CDS COG1249 620331 621656 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 292 cds-NP_459557.1 CDS NA 621813 622049 + NA cds-NP_459558.1 CDS COG3059 622062 622622 + [S] Predicted membrane protein 293 cds-NP_459559.1 CDS COG1076 622701 623876 - [O] DnaJ-domain-containing proteins 1 294 pheP CDS COG1113 624202 625596 + [E] Gamma-aminobutyrate permease and related permeases 295 ybdG CDS COG0668 625638 626885 - [M] Small-conductance mechanosensitive channel 296 apeE CDS COG3240 627196 629166 + [IR] Phospholipase/lecithinase/hemolysin 297 cds-NP_459563.1 CDS COG3933 629333 632062 + [K] Transcriptional antiterminator 298 cds-NP_459564.1 CDS COG2222 632190 633176 - [M] Predicted phosphosugar isomerases cds-NP_459565.1 CDS COG2222 633243 634286 - [M] Predicted phosphosugar isomerases cds-NP_459566.1 CDS COG3716 634319 635173 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID cds-NP_459567.1 CDS COG3715 635176 635919 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC cds-NP_459568.1 CDS COG3444 635934 636404 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB cds-NP_459569.1 CDS COG2893 636382 636831 - [G] Phosphotransferase system, mannose/fructose-specific component IIA 299 nfnB CDS COG0778 637031 637684 - [C] Nitroreductase 300 ybdF CDS COG2315 637781 638149 - [S] Uncharacterized protein conserved in bacteria cds-NP_459572.1 CDS COG1309 638149 638730 - [K] Transcriptional regulator 301 cds-NP_459573.1 CDS COG2207 639019 639360 + [K] AraC-type DNA-binding domain-containing proteins 302 ybdJ CDS NA 639366 639614 - NA 303 ybdK CDS COG2170 639681 640799 - [S] Uncharacterized conserved protein entD CDS COG2977 640811 641515 - [Q] Phosphopantetheinyl transferase component of siderophore synthetase fepA CDS COG4771 641561 643816 - [P] Outer membrane receptor for ferrienterochelin and 304 fes CDS COG2382 644005 645219 + [P] Enterochelin esterase and related enzymes ybdZ CDS COG3251 645250 645468 + [S] Uncharacterized protein conserved in bacteria entF CDS COG1020 645465 649349 + [Q] Non-ribosomal peptide synthetase modules and related 305 fepE CDS COG3765 649599 650735 + [M] Chain length determinant protein 306 fepC CDS COG1120 650788 651582 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fepG CDS COG4779 651579 652568 - [P] ABC-type enterobactin transport system, permease component fepD CDS COG0609 652568 653575 - [P] ABC-type Fe3+-siderophore transport system, permease component 307 ybdA CDS NA 653686 654930 + NA 308 fepB CDS COG4592 654993 655949 - [P] ABC-type Fe2+-enterobactin transport system, periplasmic component 309 entC CDS COG1169 656258 657433 + [HQ] Isochorismate synthase entE CDS COG1021 657443 659053 + [Q] Peptide arylation enzymes entB CDS COG1535 659067 659924 + [Q] Isochorismate hydrolase entA CDS COG1028 659924 660679 + [IQR] Dehydrogenases with different specificities (related to ybdB CDS COG2050 660682 661095 + [Q] Uncharacterized protein, possibly involved in aromatic 310 cstA CDS COG1966 661277 663382 + [T] Carbon starvation protein, predicted membrane protein ybdD CDS COG2879 663446 663643 + [S] Uncharacterized small protein 311 ybdH CDS COG0371 663679 664767 - [C] Glycerol dehydrogenase and related enzymes 312 ybdL CDS COG0436 664894 666054 + [E] Aspartate/tyrosine/aromatic aminotransferase 313 ybdM CDS NA 666055 666672 - NA ybdN CDS COG3969 666645 667880 - [R] Predicted phosphoadenosine phosphosulfate sulfotransferase 314 ybdO CDS COG0583 668046 668948 - [K] Transcriptional regulator 315 dsbG CDS COG1651 669265 670011 - [O] Protein-disulfide isomerase 316 ahpC CDS COG0450 670452 671015 + [O] Peroxiredoxin ahpF CDS COG3634 671257 672822 + [O] Alkyl hydroperoxide reductase, large subunit 317 cds-NP_459602.1 CDS COG3381 673154 673714 + [R] Uncharacterized component of anaerobic dehydrogenases cds-NP_459603.1 CDS COG0243 673707 675986 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing cds-NP_459604.1 CDS COG0437 675983 676540 + [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_459605.1 CDS COG3302 676540 677307 + [R] DMSO reductase anchor subunit 318 ybdQ CDS COG0589 677375 677803 - [T] Universal stress protein UspA and related 319 ybdR CDS COG1063 678026 679264 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 320 rnk CDS COG0782 679347 679757 - [K] Transcription elongation factor 321 rna CDS COG3719 679992 680798 - [J] Ribonuclease I 322 citT CDS COG0471 680908 682371 - [P] Di- and tricarboxylate transporters citG CDS COG1767 682409 683305 - [H] Triphosphoribosyl-dephospho-CoA synthetase citX CDS COG3697 683277 683828 - [HI] Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) citF CDS COG3051 683832 685361 - [C] Citrate lyase, alpha subunit citE CDS COG2301 685371 686279 - [G] Citrate lyase beta subunit citD CDS COG3052 686276 686572 - [C] Citrate lyase, gamma subunit citC CDS COG3053 686569 687645 - [C] Citrate lyase synthetase 323 dpiB CDS COG3290 688030 689691 + [T] Signal transduction histidine kinase regulating citrate/malate dpiA CDS COG4565 689660 690340 + [KT] Response regulator of citrate/malate metabolism 324 dcuC CDS COG3069 690394 691779 - [C] C4-dicarboxylate transporter 325 pagP CDS ROG4459 692158 692730 + NA 326 cspE CDS COG1278 692918 693127 + [K] Cold shock proteins 327 crcB CDS COG0239 693185 693568 - [D] Integral membrane protein possibly involved in 328 ybeM CDS COG0388 693659 694447 + [R] Predicted amidohydrolase 329 ybeC CDS COG1826 694576 694779 + [U] Sec-independent protein secretion pathway components 330 lipA CDS COG0320 694865 695830 - [H] Lipoate synthase 331 ybeF CDS COG0583 696036 696989 - [K] Transcriptional regulator 332 lipB CDS COG0321 697291 697866 - [H] Lipoate-protein ligase B ybeD CDS COG2921 698032 698295 - [S] Uncharacterized conserved protein dacA CDS COG1686 698404 699615 - [M] D-alanyl-D-alanine carboxypeptidase rlpA CDS COG0797 699755 700900 - [M] Lipoproteins mrdB CDS COG0772 700911 702023 - [D] Bacterial cell division membrane protein mrdA CDS COG0768 702026 703927 - [M] Cell division protein FtsI/penicillin-binding protein 2 ybeA CDS COG1576 703958 704425 - [S] Uncharacterized conserved protein ybeB CDS COG0799 704429 704746 - [S] Uncharacterized homolog of plant Iojap protein 333 cobC CDS COG0406 705075 705683 - [G] Fructose-2,6-bisphosphatase 334 cobD CDS COG0079 705780 706874 + [E] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 335 nadD CDS COG1057 706849 707490 - [H] Nicotinic acid mononucleotide adenylyltransferase holA CDS COG1466 707492 708523 - [L] DNA polymerase III, delta subunit rlpB CDS COG2980 708523 709113 - [M] Rare lipoprotein B leuS CDS COG0495 709128 711710 - [J] Leucyl-tRNA synthetase 336 cds-NP_447100.1 CDS COG2721 711947 712288 + [G] Altronate dehydratase cds-NP_447101.1 CDS COG2721 712305 713477 + [G] Altronate dehydratase cds-NP_459643.1 CDS ROG0711 713527 714480 + NA 337 cds-NP_459644.1 CDS COG3829 714548 716476 + [KT] Transcriptional regulator containing PAS, AAA-type ATPase, 338 ybeL CDS ROG1153 716569 717042 + NA 339 ybeQ CDS COG0790 717081 718076 - [R] FOG: TPR repeat, SEL1 subfamily 340 ybeR CDS ROG2994 718201 718908 + NA ybeS CDS NA 718905 720338 + NA ybeU CDS ROG2994 720350 721045 + NA ybeV CDS NA 721042 722514 + NA 341 hscC CDS COG0443 722536 724215 - [O] Molecular chaperone 342 cds-NP_459652.1 CDS NA 724291 725529 - NA ybeK CDS COG1957 725561 726496 - [F] Inosine-uridine nucleoside N-ribohydrolase 343 gltL CDS COG1126 726613 727338 - [E] ABC-type polar amino acid transport system, gltK CDS COG0765 727338 728012 - [E] ABC-type amino acid transport system, permease gltJ CDS COG0765 728012 728752 - [E] ABC-type amino acid transport system, permease gltI CDS COG0834 728912 729838 - [ET] ABC-type amino acid transport/signal transduction systems, 344 lnt CDS COG0815 730175 731713 - [M] Apolipoprotein N-acyltransferase ybeX CDS COG4535 731733 732611 - [P] Putative Mg2+ and Co2+ transporter CorC ybeY CDS COG0319 732769 733242 - [R] Predicted metal-dependent hydrolase phoL CDS COG1702 733239 734324 - [T] Phosphate starvation-inducible protein PhoH, predicted ATPase miaB CDS COG0621 734490 735914 - [J] 2-methylthioadenine synthetase 345 ubiF CDS COG0654 736058 737233 + [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 346 cds-NP_459664.1 CDS NA 737300 737875 - NA 347 glnX tRNA NA 738014 738085 - NA glnV tRNA NA 738132 738203 - NA metU tRNA NA 738253 738326 - NA glnW tRNA NA 738345 738416 - NA glnU tRNA NA 738455 738526 - NA leuW tRNA NA 738553 738634 - NA metT tRNA NA 738646 738719 - NA 348 asnB CDS COG0367 738942 740606 - [E] Asparagine synthase (glutamine-hydrolyzing) 349 nagD CDS COG0647 740896 741648 - [G] Predicted sugar phosphatases of the HAD nagC CDS COG1940 741695 742915 - [KG] Transcriptional regulator/sugar kinase nagA CDS COG1820 742920 744074 - [G] N-acetylglucosamine-6-phosphate deacetylase nagB CDS COG0363 744134 744934 - [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 350 nagE CDS COG1263 745261 747213 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 351 glnS CDS COG0008 747424 749091 + [J] Glutamyl- and glutaminyl-tRNA synthetases 352 ybfM CDS ROG8456 749537 750943 + NA ybfN CDS NA 750993 751325 + NA 353 citA CDS COG0477 751374 752678 - [GEPR] Permeases of the major facilitator superfamily citB CDS ROG8337 752729 753868 - NA cds-NP_459676.1 CDS COG2081 753855 755258 - [R] Predicted flavoproteins 354 cds-NP_459677.1 CDS COG0583 755356 756282 - [K] Transcriptional regulator fur CDS COG0735 756397 756849 - [P] Fe2+/Zn2+ uptake regulation proteins 355 fldA CDS COG0716 757131 757661 - [C] Flavodoxins 356 ybfE CDS ROG2075 757812 758105 - NA 357 ybfF CDS COG0596 758239 759009 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 358 seqA CDS COG3057 759194 759736 + [L] Negative regulator of replication initiationR pgm CDS COG0033 759761 761401 + [G] Phosphoglucomutase 359 cds-NP_459684.1 CDS COG3467 761516 762001 - [R] Predicted flavin-nucleotide-binding protein potE CDS COG0531 762066 763385 - [E] Amino acid transporters speF CDS COG1982 763382 765580 - [E] Arginine/lysine/ornithine decarboxylases 360 kdpE CDS COG0745 766342 767019 - [TK] Response regulators consisting of a CheY-like kdpD CDS COG2205 767016 769700 - [T] Osmosensitive K+ channel histidine kinase kdpC CDS COG2156 769697 770281 - [P] K+-transporting ATPase, c chain kdpB CDS COG2216 770290 772338 - [P] High-affinity K+ transport system, ATPase chain kdpA CDS COG2060 772359 774038 - [P] K+-transporting ATPase, A chain cds-NP_459692.1 CDS NA 774038 774127 - NA 361 ybfA CDS NA 774464 774670 + NA 362 phrB CDS COG0415 774781 776202 + [L] Deoxyribodipyrimidine photolyase 363 ybgH CDS COG3104 776241 777722 - [E] Dipeptide/tripeptide permease 364 ybgI CDS COG0327 778051 778794 + [S] Uncharacterized conserved protein ybgJ CDS COG2049 778810 779466 + [E] Allophanate hydrolase subunit 1 ybgK CDS COG1984 779460 780392 + [E] Allophanate hydrolase subunit 2 ybgL CDS COG1540 780382 781116 + [R] Uncharacterized proteins, homologs of lactam utilization 365 cds-NP_459700.1 CDS NA 781440 781571 + NA cds-NP_459701.1 CDS COG4974 781631 782197 + [L] Site-specific recombinase XerD 366 cds-NP_459702.1 CDS NA 782657 782992 + NA cds-NP_459703.1 CDS NA 782994 783734 + NA 367 cds-NP_459704.1 CDS COG0562 784020 785171 + [M] UDP-galactopyranose mutase cds-NP_459705.1 CDS COG1216 785168 786064 + [R] Predicted glycosyltransferases cds-NP_459706.1 CDS COG0438 786077 787210 + [M] Glycosyltransferase cds-NP_459707.1 CDS COG1682 787339 788109 + [GM] ABC-type polysaccharide/polyol phosphate export systems, permease cds-NP_459708.1 CDS COG1134 788113 788823 + [GM] ABC-type polysaccharide/polyol phosphate transport system, ATPase 368 cds-NP_459709.1 CDS NA 788917 790695 + NA 369 cds-NP_459710.1 CDS NA 790888 791721 + NA cds-NP_459711.1 CDS COG5610 791779 793674 + [R] Predicted hydrolase (HAD superfamily) 370 cds-NP_459712.1 CDS NA 793742 793879 + NA nei CDS COG0266 793928 794719 + [L] Formamidopyrimidine-DNA glycosylase 371 abrB CDS COG3180 794774 795820 - [R] Putative ammonia monooxygenase 372 gltA CDS COG0372 795957 797240 - [C] Citrate synthase 373 cds-NP_459716.1 CDS NA 797200 797586 + NA 374 sdhC CDS COG2009 797995 798384 + [C] Succinate dehydrogenase/fumarate reductase, cytochrome b subunit sdhD CDS COG2142 798378 798725 + [C] Succinate dehydrogenase, hydrophobic anchor subunit sdhA CDS COG1053 798725 800491 + [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit sdhB CDS COG0479 800505 801224 + [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 375 sucA CDS COG0567 801748 804549 + [C] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, sucB CDS COG0508 804564 805772 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) sucC CDS COG0045 805914 807080 + [C] Succinyl-CoA synthetase, beta subunit sucD CDS COG0074 807080 807949 + [C] Succinyl-CoA synthetase, alpha subunit 376 cydA CDS COG1271 809532 811100 + [C] Cytochrome bd-type quinol oxidase, subunit 1 cydB CDS COG1294 811116 812255 + [C] Cytochrome bd-type quinol oxidase, subunit 2 ybgT CDS COG4890 812270 812383 + [S] Predicted outer membrane lipoprotein 377 ybgE CDS COG3790 812520 812801 + [S] Predicted membrane protein 378 ybgC CDS COG0824 813030 813434 + [R] Predicted thioesterase tolQ CDS COG0811 813431 814123 + [U] Biopolymer transport proteins tolR CDS COG0848 814127 814555 + [U] Biopolymer transport protein tolA CDS COG3064 814620 815843 + [M] Membrane protein involved in colicin uptake tolB CDS COG0823 815967 817259 + [U] Periplasmic component of the Tol biopolymer pal CDS COG2885 817294 817818 + [M] Outer membrane protein and related peptidoglycan-associated ybgF CDS COG1729 817828 818616 + [S] Uncharacterized protein conserved in bacteria 379 lysT tRNA NA 818778 818850 + NA valT tRNA NA 818985 819057 + NA lysW tRNA NA 819064 819136 + NA lysY tRNA NA 819189 819261 + NA lysZ tRNA NA 819399 819471 + NA 380 nadA CDS COG0379 820236 821279 + [H] Quinolinate synthase pnuC CDS COG3201 821304 822023 + [H] Nicotinamide mononucleotide transporter 381 ybgR CDS COG1230 822020 822958 - [P] Co/Zn/Cd efflux system component 382 ybgS CDS ROG3493 823069 823455 - NA 383 aroG CDS COG0722 823775 824827 + [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 384 cds-NP_459741.1 CDS COG1838 824921 825466 - [C] Tartrate dehydratase beta subunit/Fumarate hydratase class cds-NP_459742.1 CDS COG1951 825481 826326 - [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class 385 cds-NP_459743.3 CDS COG0583 826495 827346 + [K] Transcriptional regulator 386 cds-NP_459744.1 CDS COG0583 827347 828330 - [K] Transcriptional regulator 387 cds-NP_459745.1 CDS COG0471 828574 829821 + [P] Di- and tricarboxylate transporters dcoC CDS COG3630 829871 830116 + [C] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit 388 dcoB CDS COG1883 831922 833223 + [C] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit cds-NP_459748.1 CDS COG1767 833342 834040 + [H] Triphosphoribosyl-dephospho-CoA synthetase 389 cds-NP_459749.1 CDS COG0609 834420 835499 + [P] ABC-type Fe3+-siderophore transport system, permease component cds-NP_459750.1 CDS COG1120 835499 836275 + [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 390 gpmA CDS COG0588 836366 837118 - [G] Phosphoglycerate mutase 1 galM CDS COG2017 837342 838382 - [G] Galactose mutarotase and related enzymes galK CDS COG0153 838376 839524 - [G] Galactokinase galT CDS COG1085 839527 840573 - [C] Galactose-1-phosphate uridylyltransferase galE CDS COG1087 840584 841600 - [M] UDP-glucose 4-epimerase 391 cds-NP_459756.1 CDS COG4714 841823 842731 - [S] Uncharacterized membrane-anchored protein conserved in bacteria 392 modF CDS COG1119 842902 844377 - [P] ABC-type molybdenum transport system, ATPase component/photorepair modE CDS COG2005 844445 845233 - [R] N-terminal domain of molybdenum-binding protein 393 cds-NP_459759.1 CDS NA 845362 845511 + NA 394 modA CDS COG0725 845678 846451 + [P] ABC-type molybdate transport system, periplasmic component modB CDS COG4149 846451 847140 + [P] ABC-type molybdate transport system, permease component modC CDS COG4148 847143 848201 + [P] ABC-type molybdate transport system, ATPase component 395 ybhA CDS COG0561 848202 849020 - [R] Predicted hydrolases of the HAD superfamily 396 ybhE CDS COG2706 849184 850179 + [G] 3-carboxymuconate cyclase 397 ybhC CDS COG4677 850323 851606 - [G] Pectin methylesterase 398 hutI CDS COG1228 851844 853067 + [Q] Imidazolonepropionase and related amidohydrolases hutG CDS COG0010 853064 854005 + [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family hutC CDS COG2188 854050 854775 + [K] Transcriptional regulators 399 hutH CDS COG2986 856658 858178 + [E] Histidine ammonia-lyase 400 ybhB CDS COG1881 858263 858739 - [R] Phospholipid-binding protein bioA CDS COG0161 858797 860086 - [H] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 401 bioB CDS COG0502 860173 861213 + [H] Biotin synthase and related enzymes bioF CDS COG0156 861210 862367 + [H] 7-keto-8-aminopelargonate synthetase and related enzymes bioC CDS COG0500 862351 863106 + [QR] SAM-dependent methyltransferases bioD CDS COG0132 863099 863785 + [H] Dethiobiotin synthetase 402 uvrB CDS COG0556 864436 866457 + [L] Helicase subunit of the DNA excision 403 cds-NP_447236.1 CDS NA 866766 866939 + NA slrP CDS COG4886 866947 869244 + [S] Leucine-rich repeat (LRR) protein 404 ybhK CDS COG0391 869336 870244 - [S] Uncharacterized conserved protein 405 moaA CDS COG2896 870641 871630 + [H] Molybdenum cofactor biosynthesis enzyme moaB CDS COG0521 871652 872164 + [H] Molybdopterin biosynthesis enzymes moaC CDS COG0315 872167 872652 + [H] Molybdenum cofactor biosynthesis enzyme moaD CDS COG1977 872639 872890 + [H] Molybdopterin converting factor, small subunit moaE CDS COG0314 872892 873344 + [H] Molybdopterin converting factor, large subunit ybhL CDS COG0670 873392 874096 + [R] Integral membrane protein, interacts with FtsH ybhM CDS COG0670 874243 874950 + [R] Integral membrane protein, interacts with FtsH cds-NP_459787.1 CDS NA 874974 875582 + NA cds-NP_459788.1 CDS NA 875590 876150 + NA 406 ybhN CDS COG0392 876153 877115 - [S] Predicted integral membrane protein ybhO CDS COG1502 877115 878356 - [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes ybhP CDS COG3568 878353 879111 - [R] Metal-dependent hydrolase 407 ybhQ CDS ROG0816 879244 879654 + NA 408 ybhR CDS COG0842 879616 880722 - [V] ABC-type multidrug transport system, permease component ybhS CDS COG0842 880838 881968 - [V] ABC-type multidrug transport system, permease component ybhF CDS COG1131 881961 883697 - [V] ABC-type multidrug transport system, ATPase component cds-NP_459796.1 CDS COG1566 883690 884685 - [V] Multidrug resistance efflux pump ybiH CDS COG1309 884685 885359 - [K] Transcriptional regulator 409 rhlE CDS COG0513 885589 886953 + [LKJ] Superfamily II DNA and RNA helicases dinG CDS COG1199 887161 889305 + [KL] Rad3-related DNA helicases ybiB CDS COG0547 889335 890309 + [E] Anthranilate phosphoribosyltransferase 410 ybiJ CDS NA 890465 890725 - NA 411 ybiI CDS COG1734 891010 891276 - [T] DnaK suppressor protein 412 ybiN CDS COG3129 891481 892407 + [R] Predicted SAM-dependent methyltransferase 413 ybiO CDS COG0668 892404 894626 - [M] Small-conductance mechanosensitive channel 414 glnQ CDS COG1126 894745 895467 - [E] ABC-type polar amino acid transport system, glnP CDS COG0765 895464 896123 - [E] ABC-type amino acid transport system, permease glnH CDS COG0834 896267 897013 - [ET] ABC-type amino acid transport/signal transduction systems, 415 dps CDS COG0783 897490 897993 - [P] DNA-binding ferritin-like protein (oxidative damage protectant) 416 ybiF CDS COG5006 898296 899183 - [R] Predicted permease, DMT superfamily 417 ompX CDS COG3637 899537 900052 + [M] Opacity protein and related surface antigens 418 ybiP CDS COG2194 900115 901695 - [R] Predicted membrane-associated, metal-dependent hydrolase 419 cds-NP_459812.1 CDS COG1321 902274 902747 + [K] Mn-dependent transcriptional regulator ybiR CDS COG1055 902744 903856 + [P] Na+/H+ antiporter NhaD and related arsenite 420 ybiS CDS COG1376 903900 904820 - [S] Uncharacterized protein conserved in bacteria 421 ybiT CDS COG0488 905039 906631 + [R] ATPase components of ABC transporters with 422 cds-NP_459816.1 CDS ROG4333 907240 907983 + NA 423 ybiV(2) CDS COG0561 908012 908731 - [R] Predicted hydrolases of the HAD superfamily 424 ybiU CDS NA 908936 910201 - NA 425 ybiV(1) CDS COG0561 910463 911272 + [R] Predicted hydrolases of the HAD superfamily 426 pflF CDS COG1882 911350 913782 - [C] Pyruvate-formate lyase pflE CDS COG1180 913788 914687 - [O] Pyruvate-formate lyase-activating enzyme 427 moeB CDS COG0476 914965 915714 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and moeA CDS COG0303 915714 916955 - [H] Molybdopterin biosynthesis enzyme 428 ybiK CDS COG1446 917152 918093 + [E] Asparaginase yliA CDS COG1123 918104 919975 + [R] ATPase components of various ABC-type transport yliB CDS COG0747 920008 921546 + [E] ABC-type dipeptide transport system, periplasmic component yliC CDS COG0601 921607 922527 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components yliD CDS COG1173 922530 923441 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 429 yliG CDS COG0621 923532 924857 - [J] 2-methylthioadenine synthetase 430 yliH CDS NA 925088 925471 + NA 431 cds-NP_459831.1 CDS COG2301 926184 926699 + [G] Citrate lyase beta subunit cds-NP_459832.3 CDS COG2086 926617 927471 + [C] Electron transfer flavoprotein, beta subunit cds-NP_459833.1 CDS COG2025 927482 928429 + [C] Electron transfer flavoprotein, alpha subunit cds-NP_459834.1 CDS COG1960 928723 929886 + [I] Acyl-CoA dehydrogenases 432 cds-NP_459835.1 CDS COG0644 930335 932020 + [C] Dehydrogenases (flavoproteins) 433 cds-NP_459836.1 CDS COG0583 932026 932916 - [K] Transcriptional regulator 434 cds-NP_459837.1 CDS COG2610 933181 933606 - [GE] H+/gluconate symporter and related permeases 435 yliI CDS COG2133 933953 934633 + [G] Glucose/sorbosone dehydrogenases 436 yliJ CDS COG0625 934630 935256 - [O] Glutathione S-transferase 437 dacC CDS COG1686 935500 936702 + [M] D-alanyl-D-alanine carboxypeptidase 438 deoR CDS COG1349 936747 937505 - [KG] Transcriptional regulators of sugar metabolism 439 ybjG CDS COG0671 937577 938185 - [I] Membrane-associated phospholipid phosphatase 440 mdfA CDS COG0477 938498 939730 + [GEPR] Permeases of the major facilitator superfamily 441 cds-NP_459844.1 CDS COG0561 939784 940599 - [R] Predicted hydrolases of the HAD superfamily cds-NP_459845.1 CDS COG2814 940596 941807 - [G] Arabinose efflux permease 442 cds-NP_459846.1 CDS COG3226 941975 942595 + [S] Uncharacterized protein conserved in bacteria 443 cds-NP_459847.1 CDS COG2985 942712 944397 - [R] Predicted permease 444 ybjM CDS NA 944668 945045 + NA 445 grxA CDS COG0695 945077 945340 - [O] Glutaredoxin and related proteins 446 ybjC CDS NA 945510 945800 + NA mdaA CDS COG0778 945784 946506 + [C] Nitroreductase rimK CDS COG0189 946564 947466 + [HJ] Glutathione synthase/Ribosomal protein S6 modification enzyme 447 ybjN CDS ROG6463 947563 948039 + NA 448 potF CDS COG0687 948388 949500 + [E] Spermidine/putrescine-binding periplasmic protein potG CDS COG3842 949588 950721 + [E] ABC-type spermidine/putrescine transport systems, ATPase components potH CDS COG1176 950731 951684 + [E] ABC-type spermidine/putrescine transport system, permease component potI CDS COG1177 951681 952526 + [E] ABC-type spermidine/putrescine transport system, permease component 449 ybjO CDS NA 952600 953073 + NA ybjF CDS COG2265 953116 954246 + [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 450 cds-NP_459860.1 CDS COG3037 954529 955872 + [S] Uncharacterized protein conserved in bacteria cds-NP_459861.1 CDS COG3414 955902 956222 + [G] Phosphotransferase system, galactitol-specific IIB component cds-NP_459862.1 CDS COG3119 956232 957719 + [P] Arylsulfatase A and related enzymes 451 artJ CDS COG0834 957938 958669 - [ET] ABC-type amino acid transport/signal transduction systems, artM CDS COG4160 958906 959574 - [E] ABC-type arginine/histidine transport system, permease component artQ CDS COG4215 959574 960290 - [E] ABC-type arginine transport system, permease component artI CDS COG0834 960297 961028 - [ET] ABC-type amino acid transport/signal transduction systems, artP CDS COG4161 961046 961774 - [E] ABC-type arginine transport system, ATPase component 452 ybjP CDS COG3042 962004 962519 - [R] Putative hemolysin 453 cds-NP_459869.1 CDS COG0582 962615 963940 - [L] Integrase cds-NP_459870.1 CDS NA 963968 964210 - NA 454 cds-NP_459871.1 CDS NA 964576 964884 - NA 455 cds-NP_459872.1 CDS ROG3242 965344 965736 - NA 456 cds-NP_459873.1 CDS NA 966312 966728 - NA 457 cds-NP_459874.1 CDS COG2932 967914 968609 - [K] Predicted transcriptional regulator 458 cds-NP_459875.1 CDS COG1396 968722 968976 + [K] Predicted transcriptional regulators 459 cds-NP_459876.1 CDS ROG6437 969476 969844 + NA 460 cds-NP_459877.1 CDS COG1061 970002 971585 + [KL] DNA or RNA helicases of superfamily cds-NP_459878.1 CDS COG4643 971582 972550 + [S] Uncharacterized protein conserved in bacteria cds-NP_459879.1 CDS NA 972550 973410 + NA cds-NP_459880.1 CDS NA 973407 974222 + NA 461 cds-NP_459881.1 CDS NA 974377 974769 - NA 462 cds-NP_459882.1 CDS COG5558 975827 976225 + [L] Transposase 463 cds-NP_459883.1 CDS NA 976815 977159 + NA cds-NP_459884.1 CDS COG3179 977162 977776 + [R] Predicted chitinase cds-NP_459885.1 CDS NA 977773 978258 + NA 464 cds-NP_459886.1 CDS ROG1146 979093 979584 + NA cds-NP_459887.1 CDS COG5525 979571 981679 + [R] Bacteriophage tail assembly protein cds-NP_459888.1 CDS COG5511 981879 983414 + [R] Bacteriophage capsid protein cds-NP_459889.3 CDS COG0740 983266 985452 + [OU] Protease subunit of ATP-dependent Clp proteases 465 cds-NP_459890.1 CDS NA 985466 986137 - NA 466 cds-NP_459891.1 CDS ROG6459 986136 986720 + NA cds-NP_459892.1 CDS NA 986717 987118 + NA cds-NP_459893.1 CDS COG5492 987129 987872 + [N] Bacterial surface proteins containing Ig-like domains 467 cds-NP_459894.1 CDS NA 988339 988656 + NA cds-NP_459895.1 CDS COG5281 988628 991789 + [S] Phage-related minor tail protein cds-NP_459896.1 CDS COG4718 991789 992118 + [S] Phage-related protein 468 cds-NP_459897.1 CDS COG3637 992245 992763 + [M] Opacity protein and related surface antigens 469 cds-NP_459898.1 CDS COG4672 992895 993590 + [S] Phage-related protein cds-NP_459899.1 CDS COG1310 993602 994336 + [R] Predicted metal-dependent protease of the PAD1/JAB1 cds-NP_459900.1 CDS COG4723 994234 994911 + [S] Phage-related protein, tail component 470 cds-NP_459901.1 CDS COG2032 994965 995489 - [P] Cu/Zn superoxide dismutase 471 cds-NP_459902.3 CDS COG4733 995583 999029 + [S] Phage-related protein, tail component cds-NP_459903.1 CDS COG5301 999073 1001445 + [R] Phage-related tail fibre protein cds-NP_459904.1 CDS NA 1001445 1002020 + NA 472 nanH CDS COG4409 1002091 1003329 - [G] Neuraminidase (sialidase) 473 cds-NP_447365.1 CDS NA 1003903 1004274 - NA 474 cds-NP_459907.1 CDS COG0393 1005370 1005693 + [S] Uncharacterized conserved protein ybjR CDS COG3023 1005690 1006520 + [V] Negative regulator of beta-lactamase expression 475 cds-NP_459909.1 CDS COG0451 1006517 1007530 - [MG] Nucleoside-diphosphate-sugar epimerases ybjT CDS COG0702 1007626 1009059 - [MG] Predicted nucleoside-diphosphate-sugar epimerases ltaA CDS COG2008 1009070 1010071 - [E] Threonine aldolase poxB CDS COG0028 1010110 1011828 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 476 hcr CDS COG1018 1011986 1012957 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 hcp CDS COG1151 1012966 1014618 - [C] 6Fe-6S prismane cluster-containing protein 477 ybjE CDS COG2431 1014762 1015661 - [S] Predicted membrane protein 478 ybjD CDS COG3593 1015863 1017521 + [L] Predicted ATP-dependent endonuclease of the OLD 479 ybjX CDS COG2990 1017518 1018486 - [S] Uncharacterized protein conserved in bacteria 480 ybjY CDS COG0845 1018614 1019732 + [M] Membrane-fusion protein ybjZ CDS COG0577 1019729 1021675 + [V] ABC-type antimicrobial peptide transport system, permease 481 cspD CDS COG1278 1021805 1022026 - [K] Cold shock proteins 482 yljA CDS COG2127 1022350 1022670 + [S] Uncharacterized conserved protein clpA CDS COG0542 1022701 1024977 + [O] ATPases with chaperone activity, ATP-binding subunit 483 tnpA_1 CDS COG1943 1025169 1025627 + [L] Transposase and inactivated derivatives 484 serW tRNA NA 1027444 1027528 - NA 485 cds-NP_459926.1 CDS COG1335 1027682 1028359 - [Q] Amidases related to nicotinamidase cds-NP_459927.1 CDS COG1741 1028379 1029239 - [R] Pirin-related protein 486 cds-NP_459928.1 CDS COG0583 1029348 1030259 + [K] Transcriptional regulator 487 infA CDS COG0361 1030350 1030568 - [J] Translation initiation factor 1 (IF-1) cds-NP_459930.1 CDS NA 1030496 1030879 - NA aat CDS COG2360 1030880 1031584 - [O] Leu/Phe-tRNA-protein transferase cydC CDS COG4987 1031629 1033350 - [CO] ABC-type transport system involved in cytochrome cydD CDS COG4988 1033351 1035117 - [CO] ABC-type transport system involved in cytochrome 488 trxB CDS COG0492 1035231 1036199 - [O] Thioredoxin reductase 489 lrp CDS COG1522 1036745 1037239 + [K] Transcriptional regulators 490 ftsK CDS COG1674 1037374 1041429 + [D] DNA segregation ATPase FtsK/SpoIIIE and related lolA CDS COG2834 1041569 1042183 + [M] Outer membrane lipoprotein-sorting protein ycaJ CDS COG2256 1042193 1043536 + [L] ATPase related to the helicase subunit 491 serS CDS COG0172 1043795 1045087 + [J] Seryl-tRNA synthetase 492 dmsA CDS COG0243 1045324 1047768 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing dmsB CDS COG0437 1047779 1048396 + [C] Fe-S-cluster-containing hydrogenase components 1 dmsC CDS COG3302 1048398 1049261 + [R] DMSO reductase anchor subunit 493 ycaD CDS COG2211 1049611 1050759 + [G] Na+/melibiose symporter and related transporters 494 ycaM CDS COG0531 1050977 1052398 + [E] Amino acid transporters 495 pflA CDS COG1180 1052691 1053515 - [O] Pyruvate-formate lyase-activating enzyme 496 cds-NP_459946.1 CDS NA 1053607 1053933 - NA 497 cds-NP_459947.1 CDS NA 1054064 1055023 + NA 498 pflB CDS COG1882 1055099 1057381 - [C] Pyruvate-formate lyase focA CDS COG2116 1057441 1058298 - [P] Formate/nitrite family of transporters 499 ycaO CDS COG1944 1058703 1060463 - [S] Uncharacterized conserved protein 500 ycaP CDS COG2323 1060600 1061292 + [S] Predicted membrane protein 501 serC CDS COG1932 1061478 1062566 + [HE] Phosphoserine aminotransferase aroA CDS COG0128 1062637 1063920 + [E] 5-enolpyruvylshikimate-3-phosphate synthase 502 ycaL CDS COG4784 1064063 1064824 + [R] Putative Zn-dependent protease 503 cmk CDS COG0283 1064997 1065680 + [F] Cytidylate kinase rpsA CDS COG0539 1065794 1067467 + [J] Ribosomal protein S1 himD CDS COG0776 1067623 1067907 + [L] Bacterial nucleoid DNA-binding protein 504 ycaI CDS COG0658 1068137 1070401 + [R] Predicted membrane metal-binding protein msbA CDS COG1132 1070438 1072186 + [V] ABC-type multidrug transport system, ATPase and lpxK CDS COG1663 1072183 1073160 + [M] Tetraacyldisaccharide-1-P 4'-kinase ycaQ CDS COG3214 1073204 1074436 + [S] Uncharacterized protein conserved in bacteria 505 ycaR CDS COG2835 1074488 1074670 + [S] Uncharacterized conserved protein kdsB CDS COG1212 1074667 1075413 + [M] CMP-2-keto-3-deoxyoctulosonic acid synthetase 506 cds-NP_459964.1 CDS NA 1075624 1076517 + NA 507 ycbC CDS COG1434 1076497 1077273 - [S] Uncharacterized conserved protein 508 smtA CDS COG0500 1077409 1078212 + [QR] SAM-dependent methyltransferases mukF CDS COG3006 1078205 1079527 + [D] Uncharacterized protein involved in chromosome partitioning mukE CDS COG3095 1079508 1080212 + [D] Uncharacterized protein involved in chromosome partitioning mukB CDS COG3096 1080212 1084678 + [D] Uncharacterized protein involved in chromosome partitioning 509 ycbB CDS COG2989 1085023 1086864 + [S] Uncharacterized protein conserved in bacteria 510 ycbK CDS COG3108 1087124 1087672 + [S] Uncharacterized protein conserved in bacteria ycbL CDS COG0491 1087700 1088347 + [R] Zn-dependent hydrolases, including glyoxylases 511 aspC CDS COG1448 1088409 1089599 - [E] Aspartate/tyrosine/aromatic aminotransferase 512 ompF CDS COG3203 1089784 1090875 - [M] Outer membrane protein (porin) 513 asnS CDS COG0017 1091482 1092882 - [J] Aspartyl/asparaginyl-tRNA synthetases 514 cds-NP_459976.1 CDS COG1522 1093083 1093544 - [K] Transcriptional regulators 515 cds-NP_459977.1 CDS COG1171 1093861 1095075 + [E] Threonine dehydratase 516 cds-NP_459978.1 CDS COG1115 1095320 1096756 + [E] Na+/alanine symporter 517 pncB CDS COG1488 1096834 1098036 - [H] Nicotinic acid phosphoribosyltransferase 518 cds-NP_459980.1 CDS COG0582 1098231 1099523 - [L] Integrase cds-NP_459981.1 CDS NA 1099568 1099816 - NA cds-NP_459982.1 CDS NA 1099857 1100096 - NA cds-NP_459983.3 CDS ROG6587 1100139 1101296 - NA cds-NP_459984.1 CDS ROG6166 1101259 1104144 - NA 519 cds-NP_459985.1 CDS NA 1104271 1104570 - NA 520 cds-NP_459986.1 CDS NA 1104743 1105003 - NA cds-NP_459987.1 CDS COG2932 1105053 1105463 - [K] Predicted transcriptional regulator 521 cds-NP_459988.1 CDS COG1191 1105788 1106162 + [K] DNA-directed RNA polymerase specialized sigma subunit 522 cds-NP_459989.1 CDS NA 1106247 1107230 + NA cds-NP_459990.1 CDS COG1484 1107233 1107982 + [L] DNA replication protein cds-NP_459991.1 CDS COG1349 1107993 1108340 + [KG] Transcriptional regulators of sugar metabolism cds-NP_459992.1 CDS NA 1108337 1108648 + NA 523 cds-NP_459993.1 CDS NA 1108726 1109016 + NA 524 cds-NP_459994.1 CDS NA 1109308 1109541 + NA 525 cds-NP_459995.1 CDS NA 1109957 1110559 + NA 526 cds-NP_459996.1 CDS NA 1110768 1111379 + NA 527 cds-NP_459997.1 CDS NA 1111512 1112309 + NA 528 cds-NP_459998.1 CDS NA 1112376 1112693 + NA 529 cds-NP_459999.1 CDS NA 1112867 1112992 + NA 530 cds-NP_460000.1 CDS NA 1113128 1113577 - NA 531 cds-NP_460001.1 CDS NA 1113938 1114450 - NA 532 cds-NP_460002.1 CDS NA 1114981 1115229 + NA cds-NP_460003.1 CDS COG3772 1115213 1115665 + [R] Phage-related lysozyme (muraminidase) cds-NP_460004.1 CDS COG0711 1115683 1116162 + [C] F0F1-type ATP synthase, subunit b 533 cds-NP_460005.1 CDS NA 1116370 1116903 + NA cds-NP_460006.1 CDS COG5525 1116860 1118998 + [R] Bacteriophage tail assembly protein 534 cds-NP_460007.1 CDS COG5511 1119432 1120745 + [R] Bacteriophage capsid protein cds-NP_460008.1 CDS COG0740 1120669 1122750 + [OU] Protease subunit of ATP-dependent Clp proteases 535 cds-NP_460009.1 CDS COG5471 1122841 1123164 + [S] Uncharacterized conserved protein cds-NP_460010.1 CDS COG1934 1123157 1123456 + [S] Uncharacterized protein conserved in bacteria cds-NP_460011.1 CDS ROG6459 1123437 1124003 + NA cds-NP_460012.1 CDS NA 1124000 1124401 + NA cds-NP_460013.1 CDS COG5492 1124413 1125162 + [N] Bacterial surface proteins containing Ig-like domains cds-NP_460014.1 CDS NA 1125208 1125606 + NA cds-NP_460015.1 CDS NA 1125603 1125932 + NA 536 cds-NP_460016.1 CDS COG5281 1126012 1128999 + [S] Phage-related minor tail protein cds-NP_460017.1 CDS COG4718 1128996 1129328 + [S] Phage-related protein cds-NP_460018.1 CDS COG3637 1129427 1129924 + [M] Opacity protein and related surface antigens 537 sodC CDS COG2032 1130041 1130574 - [P] Cu/Zn superoxide dismutase 538 cds-NP_460020.1 CDS COG4672 1130664 1131359 + [S] Phage-related protein cds-NP_460021.1 CDS COG1310 1131369 1132106 + [R] Predicted metal-dependent protease of the PAD1/JAB1 cds-NP_460022.1 CDS COG4723 1132004 1132708 + [S] Phage-related protein, tail component cds-NP_460023.1 CDS COG4733 1132780 1135227 + [S] Phage-related protein, tail component 539 cds-NP_460024.1 CDS COG5301 1136464 1138902 + [R] Phage-related tail fibre protein cds-NP_460025.1 CDS NA 1138902 1139483 + NA 540 sseI CDS NA 1139959 1140927 + NA 541 cds-NP_460027.1 CDS COG2135 1141575 1142201 - [S] Uncharacterized conserved protein 542 cds-NP_460028.1 CDS NA 1142270 1142569 - NA cds-NP_460029.1 CDS ROG7300 1142554 1143240 - NA 543 cds-NP_460030.1 CDS NA 1143511 1143702 - NA 544 pepN CDS COG0308 1144129 1146741 + [E] Aminopeptidase N 545 pyrD CDS COG0167 1146949 1147959 + [F] Dihydroorotate dehydrogenase 546 ycbW CDS ROG3478 1148125 1148667 + NA 547 cds-NP_460034.1 CDS COG3217 1148664 1149773 - [R] Uncharacterized Fe-S protein 548 ycbY CDS COG0116 1149872 1151980 + [L] Predicted N6-adenine-specific DNA methylase uup CDS COG0488 1151993 1153900 + [R] ATPase components of ABC transporters with pqiA CDS COG2995 1153915 1155168 + [S] Uncharacterized paraquat-inducible protein A pqiB CDS COG3008 1155173 1156813 + [R] Paraquat-inducible protein B ymbA CDS COG3009 1156810 1157373 + [S] Uncharacterized protein conserved in bacteria 549 rmf CDS COG3130 1157629 1157796 + [J] Ribosome modulation factor 550 fabA CDS COG0764 1157896 1158414 - [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases lonH CDS COG1067 1158483 1160243 - [O] Predicted ATP-dependent protease 551 ycbG CDS COG3120 1160429 1160881 + [S] Uncharacterized protein conserved in bacteria 552 ompA CDS COG2885 1160953 1162005 - [M] Outer membrane protein and related peptidoglycan-associated 553 sulA CDS COG5404 1162362 1162871 - [D] SOS-response cell division inhibitor, blocks FtsZ 554 yccR CDS COG3070 1163088 1163693 + [K] Regulator of competence-specific genes 555 yccS CDS COG1289 1163680 1165833 - [S] Predicted membrane protein yccF CDS COG3304 1165852 1166298 - [S] Predicted membrane protein 556 helD CDS COG1074 1166422 1168476 + [L] ATP-dependent exoDNAse (exonuclease V) beta subunit 557 mgsA CDS COG1803 1168512 1168970 - [G] Methylglyoxal synthase yccT CDS COG3110 1169065 1169727 - [S] Uncharacterized protein conserved in bacteria 558 cds-NP_460052.1 CDS COG1832 1169898 1170314 + [R] Predicted CoA-binding protein 559 yccV CDS COG3785 1170359 1170676 - [S] Uncharacterized conserved protein yccW CDS COG1092 1170734 1171945 - [R] Predicted SAM-dependent methyltransferases 560 cds-NP_460055.1 CDS COG1881 1172160 1172708 + [R] Phospholipid-binding protein cds-NP_460056.1 CDS COG2207 1172734 1173513 + [K] AraC-type DNA-binding domain-containing proteins yccX CDS COG1254 1173562 1173843 + [C] Acylphosphatases 561 yccK CDS COG2920 1173840 1174169 - [P] Dissimilatory sulfite reductase (desulfoviridin), gamma subunit yccA CDS COG0670 1174256 1174915 - [R] Integral membrane protein, interacts with FtsH 562 serT tRNA NA 1175309 1175393 + NA 563 pipA CDS NA 1175536 1176216 - NA 564 pipB CDS COG1357 1176438 1177313 - [S] Uncharacterized low-complexity proteins 565 cds-NP_460062.1 CDS NA 1177531 1177851 + NA 566 pipC CDS NA 1177861 1178202 - NA sopB CDS NA 1178219 1179904 - NA 567 orfX CDS NA 1180236 1180406 + NA 568 cds-NP_447525.1 CDS NA 1180407 1180517 - NA 569 pipD CDS COG4690 1180626 1182095 - [E] Dipeptidase 570 copS CDS COG2205 1182268 1183632 - [T] Osmosensitive K+ channel histidine kinase copR CDS COG0745 1183625 1184371 - [TK] Response regulators consisting of a CheY-like 571 cds-NP_460070.1 CDS COG2351 1184441 1184851 + [R] Transthyretin-like protein 572 hpaC CDS COG1853 1185184 1185696 - [R] Conserved protein/domain typically associated with flavoprotein hpaB CDS COG2368 1185714 1187276 - [Q] Aromatic ring hydroxylase 573 hpaR CDS COG1846 1187494 1187934 - [K] Transcriptional regulators 574 hpaG CDS COG0179 1188209 1189498 + [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) hpaE CDS COG1012 1189495 1190961 + [C] NAD-dependent aldehyde dehydrogenases hpaD CDS COG3384 1190963 1191814 + [S] Uncharacterized conserved protein hpaF CDS COG3232 1191824 1192204 + [E] 5-carboxymethyl-2-hydroxymuconate isomerase hpaH CDS COG3971 1192347 1193150 + [Q] 2-keto-4-pentenoate hydratase hpaI CDS COG3836 1193161 1193952 + [G] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 575 hpaX CDS COG0477 1194024 1195400 + [GEPR] Permeases of the major facilitator superfamily hpaA CDS COG2207 1195410 1196306 + [K] AraC-type DNA-binding domain-containing proteins cds-NP_460082.1 CDS COG1234 1196320 1197258 + [R] Metal-dependent hydrolases of the beta-lactamase superfamily 576 cds-NP_460083.1 CDS NA 1197666 1198028 - NA 577 yccD CDS ROG0188 1198682 1198987 - NA cbpA CDS COG2214 1198987 1199907 - [O] DnaJ-class molecular chaperone 578 scsA CDS NA 1200142 1200504 + NA scsB CDS COG4232 1200553 1202439 + [OC] Thiol:disulfide interchange protein scsC CDS COG1651 1202436 1203059 + [O] Protein-disulfide isomerase scsD CDS COG0526 1203049 1203555 + [OC] Thiol-disulfide isomerase and thioredoxins 579 agp CDS ROG1885 1203688 1204929 + NA 580 yccJ CDS NA 1204963 1205190 - NA wraB CDS COG0655 1205211 1205807 - [R] Multimeric flavodoxin WrbA 581 ymdF CDS COG3729 1206192 1206359 + [R] General stress protein 582 ycdC CDS COG1309 1206496 1207134 + [K] Transcriptional regulator 583 cds-NP_460095.1 CDS COG3755 1207131 1207526 - [S] Uncharacterized protein conserved in bacteria putA CDS COG4230 1207585 1211547 - [C] Delta 1-pyrroline-5-carboxylate dehydrogenase 584 putP CDS COG0591 1211969 1213477 + [ER] Na+/proline symporter 585 phoH CDS COG1702 1214304 1215158 + [T] Phosphate starvation-inducible protein PhoH, predicted ATPase 586 cds-NP_460099.1 CDS COG1737 1215264 1216145 - [K] Transcriptional regulators 587 cds-NP_460100.1 CDS COG0591 1216430 1217926 - [ER] Na+/proline symporter 588 cds-NP_460101.1 CDS COG3010 1218263 1218943 - [G] Putative N-acetylmannosamine-6-phosphate epimerase 589 cds-NP_460102.1 CDS COG3055 1219449 1220609 + [S] Uncharacterized protein conserved in bacteria cds-NP_460103.1 CDS ROG3116 1220655 1221347 + NA 590 cds-NP_460104.1 CDS COG0477 1221630 1222910 + [GEPR] Permeases of the major facilitator superfamily cds-NP_460105.1 CDS COG0673 1222921 1224027 + [R] Predicted dehydrogenases and related proteins 591 serX tRNA NA 1224732 1224816 - NA 592 ycdW CDS COG0111 1225055 1225993 + [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 593 ycdX CDS COG1387 1226077 1226814 + [ER] Histidinol phosphatase and related hydrolases of ycdY CDS COG3381 1226838 1227392 + [R] Uncharacterized component of anaerobic dehydrogenases ycdZ CDS ROG2796 1227445 1227975 + NA 594 csgG CDS COG1462 1228014 1228847 - [M] Uncharacterized protein involved in formation of csgF CDS ROG3787 1228874 1229290 - NA csgE CDS NA 1229317 1229712 - NA csgD CDS COG2197 1229717 1230367 - [TK] Response regulator containing a CheY-like receiver 595 csgB CDS ROG1255 1231122 1231577 + NA csgA CDS ROG1255 1231619 1232074 + NA csgC CDS NA 1232136 1232462 + NA 596 ymdA CDS NA 1232593 1232913 + NA 597 cds-NP_460118.1 CDS COG2110 1233002 1233541 + [R] Predicted phosphatase homologous to the C-terminal ymdC CDS COG1502 1233480 1234964 + [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 598 mdoC CDS ROG0348 1234981 1236135 - NA 599 mdoG CDS COG3131 1236407 1237942 + [P] Periplasmic glucans biosynthesis protein mdoH CDS COG2943 1237935 1240478 + [M] Membrane glycosyltransferase yceK CDS COG5645 1240552 1240779 + [R] Predicted periplasmic lipoprotein 600 msyB CDS NA 1240780 1241154 - NA 601 yceE CDS ROG2472 1241236 1242450 - NA 602 htrB CDS COG1560 1242605 1243525 - [M] Lauroyl/myristoyl acyltransferase 603 yceA CDS COG1054 1243745 1244797 + [R] Predicted sulfurtransferase 604 yceI CDS COG2353 1244849 1245424 - [S] Uncharacterized conserved protein cds-NP_460129.1 CDS COG3038 1245421 1245993 - [C] Cytochrome B561 605 yceO CDS NA 1246256 1246369 - NA solA CDS COG0665 1246410 1247528 - [E] Glycine/D-amino acid oxidases (deaminating) 606 yceP CDS NA 1247641 1247895 - NA 607 dinI CDS ROG4049 1248185 1248430 - NA 608 pyrC CDS COG0418 1248504 1249550 - [F] Dihydroorotase 609 yceB CDS ROG2451 1249655 1250215 - NA 610 grxB CDS COG2999 1250340 1250987 - [O] Glutaredoxin 2 611 yceL CDS NA 1251051 1252259 - NA 612 rimJ CDS COG1670 1252496 1253080 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins yceH CDS COG3132 1253116 1253763 + [S] Uncharacterized protein conserved in bacteria mviM CDS COG0673 1253765 1254688 + [R] Predicted dehydrogenases and related proteins 613 mviN CDS COG0728 1254953 1256527 + [R] Uncharacterized membrane protein, putative virulence factor 614 flgN CDS COG3418 1256609 1257031 - [NUO] Flagellar biosynthesis/type III secretory pathway chaperone flgM CDS COG2747 1257036 1257329 - [KNU] Negative regulator of flagellin synthesis (anti-sigma28 flgA CDS COG1261 1257421 1258080 - [NO] Flagellar basal body P-ring biosynthesis protein 615 flgB CDS COG1815 1258237 1258653 + [N] Flagellar basal body protein flgC CDS COG1558 1258657 1259061 + [N] Flagellar basal body rod protein flgD CDS COG1843 1259073 1259771 + [N] Flagellar hook capping protein flgE CDS COG1749 1259798 1261009 + [N] Flagellar hook protein FlgE flgF CDS COG4787 1261030 1261785 + [N] Flagellar basal body rod protein flgG CDS COG4786 1261799 1262581 + [N] Flagellar basal body rod protein flgH CDS COG2063 1262636 1263334 + [N] Flagellar basal body L-ring protein flgI CDS COG1706 1263346 1264443 + [N] Flagellar basal-body P-ring protein flgJ CDS COG3951 1264443 1265393 + [MNO] Rod binding protein flgK CDS COG1256 1265458 1267119 + [N] Flagellar hook-associated protein flgL CDS ROG2760 1267134 1268087 + NA 616 rne CDS COG1530 1268344 1271547 - [J] Ribonucleases G and E 617 rluC CDS COG0564 1272121 1273080 + [J] Pseudouridylate synthases, 23S RNA-specific 618 cds-NP_460158.1 CDS NA 1273236 1273979 + NA 619 yceF CDS COG0424 1274481 1275065 - [D] Nucleotide-binding protein implicated in inhibition of 620 yceD CDS COG1399 1275263 1275784 + [R] Predicted metal-binding, possibly nucleic acid-binding protein rpmF CDS COG0333 1275836 1276009 + [J] Ribosomal protein L32 plsX CDS COG0416 1276143 1277222 + [I] Fatty acid/phospholipid biosynthesis enzyme fabH CDS COG0332 1277302 1278255 + [I] 3-oxoacyl-[acyl-carrier-protein] synthase III fabD CDS COG0331 1278271 1279200 + [I] (acyl-carrier-protein) S-malonyltransferase fabG CDS COG1028 1279213 1279947 + [IQR] Dehydrogenases with different specificities (related to acpP CDS COG0236 1280103 1280339 + [IQ] Acyl carrier protein fabF CDS COG0304 1280425 1281666 + [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase pabC CDS COG0115 1281790 1282599 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase yceG CDS COG1559 1282602 1283624 + [R] Predicted periplasmic solute-binding protein tmk CDS COG0125 1283614 1284255 + [F] Thymidylate kinase holB CDS COG2812 1284252 1285256 + [L] DNA polymerase III, gamma/tau subunits ycfH CDS COG0084 1285267 1286064 + [L] Mg-dependent DNase 621 ptsG CDS COG1263 1286359 1287792 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 622 fhuE CDS COG4773 1287877 1290051 - [P] Outer membrane receptor for ferric coprogen 623 ycfF CDS COG0537 1290393 1290752 + [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other ycfL CDS COG5633 1290755 1291129 + [R] Predicted periplasmic lipoprotein ycfM CDS COG3417 1291143 1291781 + [R] Collagen-binding surface adhesin SpaP (antigen I/II ycfN CDS COG0510 1291762 1292586 + [M] Predicted choline kinase involved in LPS nagZ CDS COG1472 1292597 1293622 + [G] Beta-glucosidase-related glycosidases ycfP CDS COG3150 1293647 1294189 + [R] Predicted esterase 624 ndh CDS COG1252 1294444 1295748 + [C] NADH dehydrogenase, FAD-containing subunit 625 ycfJ CDS COG3134 1295927 1296466 + [S] Predicted outer membrane lipoprotein 626 ycfQ CDS COG1309 1296541 1297176 - [K] Transcriptional regulator 627 ycfR CDS NA 1297418 1297675 + NA 628 ycfS CDS COG1376 1297772 1298737 - [S] Uncharacterized protein conserved in bacteria 629 mfd CDS COG1197 1298885 1302331 - [LK] Transcription-repair coupling factor (superfamily II helicase) 630 ycfU CDS COG4591 1302558 1303868 + [M] ABC-type transport system, involved in lipoprotein ycfV CDS COG1136 1303861 1304562 + [V] ABC-type antimicrobial peptide transport system, ATPase ycfW CDS COG4591 1304562 1305806 + [M] ABC-type transport system, involved in lipoprotein ycfX CDS COG1940 1305835 1306746 + [KG] Transcriptional regulator/sugar kinase cobB CDS COG0846 1306765 1307586 + [K] NAD-dependent protein deacetylases, SIR2 family 631 potD CDS COG0687 1307668 1308714 - [E] Spermidine/putrescine-binding periplasmic protein potC CDS COG1177 1308739 1309518 - [E] ABC-type spermidine/putrescine transport system, permease component 632 sifA CDS NA 1309834 1310844 - NA 633 potB CDS COG1176 1311173 1312036 - [E] ABC-type spermidine/putrescine transport system, permease component potA CDS COG3842 1312020 1313156 - [E] ABC-type spermidine/putrescine transport systems, ATPase components 634 pepT CDS COG2195 1313407 1314636 + [E] Di- and tripeptidases cds-NP_460198.1 CDS ROG1225 1314640 1315974 + NA 635 ycfD CDS COG2850 1316014 1317135 - [S] Uncharacterized conserved protein 636 phoQ CDS COG2205 1317216 1318679 - [T] Osmosensitive K+ channel histidine kinase phoP CDS COG0745 1318679 1319353 - [TK] Response regulators consisting of a CheY-like 637 purB CDS COG0015 1319477 1320847 - [F] Adenylosuccinate lyase ycfC CDS COG2915 1320851 1321498 - [R] Uncharacterized protein involved in purine metabolism trmU CDS COG0482 1321579 1322730 - [J] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ymfB CDS COG1051 1322739 1323200 - [F] ADP-ribose pyrophosphatase cds-NP_460206.1 CDS COG4461 1323212 1323541 - [S] Uncharacterized protein conserved in bacteria, putative ymfC CDS COG1187 1323538 1324203 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 638 icdA CDS COG0538 1324375 1325625 + [C] Isocitrate dehydrogenases 639 cds-NP_460209.1 CDS ROG5075 1326073 1327197 + NA 640 envF CDS ROG7103 1328179 1328967 - NA 641 msgA CDS NA 1329456 1329695 - NA 642 envE CDS NA 1329886 1330407 - NA 643 cds-NP_460213.1 CDS COG1278 1330822 1331034 - [K] Cold shock proteins 644 pagD CDS ROG1100 1331166 1331429 - NA 645 pagC CDS COG3637 1332241 1332798 + [M] Opacity protein and related surface antigens 646 rna-STM1247 tRNA NA 1333199 1333272 + NA 647 cds-NP_460216.1 CDS NA 1334035 1334379 - NA 648 cds-NP_460217.1 CDS NA 1335082 1335354 + NA 649 cds-NP_460218.1 CDS COG0071 1335506 1335973 + [O] Molecular chaperone (small heat shock protein) 650 cds-NP_460219.1 CDS COG4692 1336312 1337355 + [G] Predicted neuraminidase (sialidase) 651 cds-NP_460220.1 CDS COG3038 1337438 1337968 - [C] Cytochrome B561 652 cds-NP_460221.1 CDS NA 1338117 1338431 - NA 653 cds-NP_460222.1 CDS COG0747 1339113 1340747 + [E] ABC-type dipeptide transport system, periplasmic component cds-NP_460223.1 CDS COG0601 1340747 1341721 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components cds-NP_460224.1 CDS COG1173 1341711 1342523 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components cds-NP_460225.1 CDS COG1124 1342517 1343314 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component cds-NP_460226.1 CDS COG1124 1343308 1343898 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 654 cds-NP_460227.1 CDS COG0668 1343980 1345113 - [M] Small-conductance mechanosensitive channel 655 cds-NP_460228.1 CDS NA 1345307 1345633 + NA rna-STM1262 tRNA NA 1345637 1345710 + NA 656 cds-NP_460229.3 CDS COG3443 1345830 1346477 + [R] Predicted periplasmic or secreted protein 657 aadA CDS COG1708 1346586 1347374 + [R] Predicted nucleotidyltransferases 658 cds-NP_460231.1 CDS NA 1347519 1348112 + NA 659 cds-NP_460232.1 CDS NA 1348181 1349029 + NA 660 cds-NP_460233.1 CDS NA 1349284 1349532 - NA 661 cds-NP_460234.1 CDS NA 1349611 1349760 - NA 662 cds-NP_460235.1 CDS COG1605 1349843 1350388 + [E] Chorismate mutase 663 yeaS CDS COG1280 1350585 1351223 + [E] Putative threonine efflux protein 664 yeaR CDS COG3615 1351396 1351758 + [P] Uncharacterized protein/domain, possibly involved in tellurite yoaG CDS COG3427 1351761 1351943 + [S] Uncharacterized conserved protein 665 cds-NP_460239.1 CDS NA 1352173 1352814 + NA 666 yeaQ CDS COG2261 1353129 1353377 + [S] Predicted membrane protein 667 yaoF CDS COG3042 1353810 1354061 + [R] Putative hemolysin 668 cds-NP_460242.1 CDS NA 1354130 1354441 + NA 669 yeaO CDS COG3189 1354427 1354774 - [S] Uncharacterized conserved protein 670 yeaN CDS COG2807 1354893 1356077 - [P] Cyanate permease 671 yeaM CDS COG2207 1356178 1356972 + [K] AraC-type DNA-binding domain-containing proteins 672 yeaL CDS COG2707 1356952 1357398 - [S] Predicted membrane protein 673 cds-NP_460247.1 CDS NA 1357604 1357711 + NA 674 yeaK CDS COG2606 1357708 1358226 - [S] Uncharacterized conserved protein yeaJ CDS COG3706 1358276 1359769 - [T] Response regulator containing a CheY-like receiver 675 yeaH CDS COG2718 1360410 1361696 - [S] Uncharacterized conserved protein yeaG CDS COG2766 1361819 1363753 - [T] Putative Ser protein kinase 676 mipA CDS COG3713 1364180 1364926 + [M] Outer membrane protein V 677 cds-NP_460253.1 CDS COG0641 1365216 1366412 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) 678 cds-NP_460254.1 CDS COG0667 1366509 1367366 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 679 yeaD CDS COG0676 1367465 1368349 - [G] Uncharacterized enzymes related to aldose 1-epimerase 680 gapA CDS COG0057 1368684 1369679 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 681 yeaA CDS COG0229 1369991 1370434 + [O] Conserved domain frequently associated with peptide yeaC CDS COG3139 1370476 1370754 + [S] Uncharacterized protein conserved in bacteria 682 pncA CDS COG1335 1371106 1371762 - [Q] Amidases related to nicotinamidase ansA CDS COG0252 1371789 1372805 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D sppA CDS COG0616 1372901 1374757 - [OU] Periplasmic serine proteases (ClpP class) 683 ydjA CDS COG0778 1374931 1375482 + [C] Nitroreductase 684 selD CDS COG0709 1375600 1376643 + [E] Selenophosphate synthase topB CDS COG0550 1376648 1378597 + [L] Topoisomerase IA 685 gdhA CDS COG0334 1378627 1379970 - [E] Glutamate dehydrogenase/leucine dehydrogenase 686 cds-NP_460266.1 CDS NA 1380209 1380484 + NA 687 cds-NP_460267.1 CDS COG1051 1380444 1380860 - [F] ADP-ribose pyrophosphatase 688 xthA CDS COG0708 1380933 1381739 - [L] Exonuclease III 689 astC CDS COG4992 1382185 1383411 + [E] Ornithine/acetylornithine aminotransferase astA CDS COG3138 1383402 1384436 + [E] Arginine/ornithine N-succinyltransferase beta subunit astD CDS COG1012 1384433 1385911 + [C] NAD-dependent aldehyde dehydrogenases astB CDS COG3724 1385908 1387251 + [E] Succinylarginine dihydrolase astE CDS COG2988 1387244 1388212 + [E] Succinylglutamate desuccinylase 690 spy CDS COG3678 1388548 1389033 + [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 691 cds-NP_460275.1 CDS COG0322 1389108 1390016 - [L] Nuclease subunit of the excinuclease complex 692 nadE CDS COG0171 1390110 1390937 - [H] NAD synthase 693 osmE CDS ROG1335 1391156 1391497 + NA 694 celA CDS COG1440 1391798 1392118 + [G] Phosphotransferase system cellobiose-specific component IIB celB CDS COG1455 1392201 1393559 + [G] Phosphotransferase system cellobiose-specific component IIC celC CDS COG1447 1393610 1393957 + [G] Phosphotransferase system cellobiose-specific component IIA celD CDS COG2169 1393968 1394810 + [F] Adenosine deaminase 695 celF CDS COG1486 1394935 1396290 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases celG CDS COG3394 1396303 1397061 + [S] Uncharacterized protein conserved in bacteria 696 katE CDS COG0753 1397105 1399357 - [P] Catalase 697 cedA CDS NA 1399722 1399964 + NA 698 ydjN CDS COG1823 1400066 1401457 - [R] Predicted Na+/dicarboxylate symporter 699 ydjM CDS COG1988 1401594 1402193 - [R] Predicted membrane-bound metal-dependent hydrolases 700 yniC CDS COG0637 1402331 1402999 - [R] Predicted phosphatase/phosphohexomutase 701 yniB CDS NA 1403148 1403684 + NA 702 cds-NP_460290.1 CDS COG3001 1403727 1404587 - [G] Fructosamine-3-kinase 703 ydiZ CDS ROG7109 1404694 1404984 - NA 704 pfkB CDS COG1105 1405081 1406013 - [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase 705 ydiY CDS COG3137 1406302 1407060 + [M] Putative salt-induced outer membrane protein 706 cds-NP_460294.1 CDS COG3528 1407109 1408068 - [S] Uncharacterized protein conserved in bacteria 707 cds-NP_460295.1 CDS NA 1408211 1408525 + NA cds-NP_460296.1 CDS COG1864 1408522 1409376 + [F] DNA/RNA endonuclease G, NUC1 708 cds-NP_447756.1 CDS NA 1409549 1409755 + NA 709 rfc CDS NA 1410078 1411301 - NA 710 thrS CDS COG0441 1412193 1414121 + [J] Threonyl-tRNA synthetase infC CDS COG0290 1414233 1414667 + [J] Translation initiation factor 3 (IF-3) rpmI CDS COG0291 1414763 1414960 + [J] Ribosomal protein L35 rplT CDS COG0292 1415011 1415367 + [J] Ribosomal protein L20 pheS CDS COG0016 1415669 1416652 + [J] Phenylalanyl-tRNA synthetase alpha subunit pheT CDS COG0072 1416668 1419055 + [J] Phenylalanyl-tRNA synthetase beta subunit himA CDS COG0776 1419060 1419359 + [L] Bacterial nucleoid DNA-binding protein 711 btuC CDS COG4139 1419562 1420542 + [H] ABC-type cobalamin transport system, permease component btuE CDS COG0386 1420634 1421185 + [O] Glutathione peroxidase btuD CDS COG4138 1421185 1421934 + [H] ABC-type cobalamin transport system, ATPase component 712 nlpC CDS COG0791 1422011 1422475 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 713 ydiV CDS NA 1422789 1423502 + NA ydiU CDS COG0397 1423564 1425006 + [S] Uncharacterized conserved protein 714 ydiE CDS COG4256 1425041 1425232 - [P] Hemin uptake protein 715 aroH CDS COG0722 1425389 1426435 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 716 ydiA CDS COG1806 1426591 1427424 - [S] Uncharacterized protein conserved in bacteria 717 pps CDS COG0574 1427761 1430139 + [G] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 718 ydiD CDS COG0318 1430181 1431821 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 719 ydiT CDS COG2440 1431911 1432204 - [C] Ferredoxin-like protein ydiS CDS COG0644 1432201 1433487 - [C] Dehydrogenases (flavoproteins) ydiR CDS COG2025 1433544 1434479 - [C] Electron transfer flavoprotein, alpha subunit ydiQ CDS COG2086 1434501 1435265 - [C] Electron transfer flavoprotein, beta subunit 720 ydiP CDS COG2207 1435728 1436618 + [K] AraC-type DNA-binding domain-containing proteins 721 ydiO CDS COG1960 1436694 1437845 - [I] Acyl-CoA dehydrogenases ydiF CDS COG4670 1437859 1439412 - [I] Acyl CoA:acetate/3-ketoacid CoA transferase 722 aroD CDS COG0710 1439608 1440366 - [E] 3-dehydroquinate dehydratase ydiB CDS COG0169 1440411 1441277 - [E] Shikimate 5-dehydrogenase ydiN CDS COG0477 1441344 1442579 - [GEPR] Permeases of the major facilitator superfamily ydiM CDS COG0477 1442943 1444154 - [GEPR] Permeases of the major facilitator superfamily 723 ydiL CDS ROG6032 1444295 1444654 - NA 724 ydiK CDS NA 1445112 1446230 - NA 725 ydiJ CDS COG0277 1446495 1449551 + [C] FAD/FMN-containing dehydrogenases cds-NP_460331.1 CDS COG2050 1449548 1449958 + [Q] Uncharacterized protein, possibly involved in aromatic ydiH CDS NA 1450018 1450245 + NA 726 cds-NP_460333.1 CDS COG1823 1450533 1451879 - [R] Predicted Na+/dicarboxylate symporter 727 sufA CDS COG0316 1452306 1452674 + [S] Uncharacterized conserved protein sufB CDS COG0719 1452683 1454170 + [O] ABC-type transport system involved in Fe-S sufC CDS COG0396 1454187 1454933 + [O] ABC-type transport system involved in Fe-S sufD CDS COG0719 1454908 1456179 + [O] ABC-type transport system involved in Fe-S sufS CDS COG0520 1456176 1457396 + [E] Selenocysteine lyase ynhA CDS COG2166 1457409 1457825 + [R] SufE protein probably involved in Fe-S 728 ynhG CDS COG1376 1457980 1458981 + [S] Uncharacterized protein conserved in bacteria 729 lppB CDS COG4238 1459048 1459287 - [M] Murein lipoprotein lpp CDS COG4238 1459370 1459606 - [M] Murein lipoprotein 730 pykF CDS COG0469 1459917 1461329 - [G] Pyruvate kinase 731 orf48 CDS COG0531 1461731 1463074 - [E] Amino acid transporters orf32 CDS COG0596 1463096 1463989 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase orf245 CDS COG5426 1464048 1464785 - [S] Uncharacterized membrane protein orf408 CDS COG0524 1464797 1466023 - [G] Sugar kinases, ribokinase family 732 ttrA CDS COG0243 1466346 1469408 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing ttrC CDS ROG3256 1469401 1470423 - NA ttrB CDS COG0437 1470424 1471176 - [C] Fe-S-cluster-containing hydrogenase components 1 733 ttrS CDS COG4191 1471340 1473118 + [T] Signal transduction histidine kinase regulating C4-dicarboxylate ttrR CDS COG4566 1473093 1473713 + [T] Response regulator 734 orf70 CDS NA 1473811 1474023 + NA 735 orf319 CDS COG3272 1474119 1475078 - [S] Uncharacterized conserved protein 736 orf242 CDS COG0789 1475251 1475979 - [K] Predicted transcriptional regulators ssrB CDS COG2197 1476158 1476796 - [TK] Response regulator containing a CheY-like receiver ssrA CDS COG0642 1476827 1479589 - [T] Signal transduction histidine kinase 737 ssaB CDS NA 1479990 1480391 + NA ssaC CDS COG1450 1480393 1481886 + [NU] Type II secretory pathway, component PulD ssaD CDS ROG8041 1481867 1483078 + NA ssaE CDS NA 1483086 1483328 + NA 738 sseA CDS COG2960 1483592 1483918 + [S] Uncharacterized protein conserved in bacteria sseB CDS NA 1483925 1484515 + NA sscA CDS COG0457 1484512 1484985 + [R] FOG: TPR repeat sseC CDS COG5613 1484988 1486442 + [S] Uncharacterized conserved protein sseD CDS NA 1486458 1487045 + NA sseE CDS NA 1487048 1487464 + NA sscB CDS COG0457 1487516 1487950 + [R] FOG: TPR repeat sseF CDS NA 1487966 1488748 + NA sseG CDS NA 1488745 1489434 + NA 739 ssaG CDS NA 1489528 1489743 + NA ssaH CDS NA 1489784 1490011 + NA ssaI CDS NA 1490023 1490271 + NA ssaJ CDS COG4669 1490268 1491017 + [U] Type III secretory pathway, lipoprotein EscJ cds-NP_460375.1 CDS NA 1491035 1491583 + NA ssaK CDS COG2718 1491580 1492254 + [S] Uncharacterized conserved protein ssaL CDS NA 1492220 1493236 + NA ssaM CDS NA 1493294 1493662 + NA ssaV CDS COG4789 1493647 1495692 + [U] Type III secretory pathway, component EscV ssaN CDS COG1157 1495682 1496983 + [NU] Flagellar biosynthesis/type III secretory pathway ATPase ssaO CDS COG3605 1496986 1497363 + [T] Signal transduction protein containing GAF and ssaP CDS COG5085 1497344 1497718 + [S] Predicted membrane protein ssaQ CDS COG1886 1497699 1498667 + [NU] Flagellar motor switch/type III secretory pathway ssaR CDS COG4790 1498735 1499382 + [U] Type III secretory pathway, component EscR ssaS CDS COG4794 1499379 1499645 + [U] Type III secretory pathway, component EscS ssaT CDS COG4791 1499646 1500425 + [U] Type III secretory pathway, component EscT ssaU CDS COG4792 1500422 1501480 + [U] Type III secretory pathway, component EscU 740 valW tRNA NA 1501631 1501704 - NA valV tRNA NA 1501718 1501791 - NA 741 ydhE CDS COG0534 1501953 1503326 - [V] Na+-driven multidrug efflux pump 742 ribE CDS COG0307 1503543 1504184 + [H] Riboflavin synthase alpha chain 743 cfa CDS COG2230 1504226 1505374 - [M] Cyclopropane fatty acid synthase and related 744 ydhC CDS COG0477 1505664 1506869 - [GEPR] Permeases of the major facilitator superfamily 745 ydhB CDS COG0583 1506982 1507914 + [K] Transcriptional regulator 746 purR CDS COG1609 1507911 1508936 - [K] Transcriptional regulators 747 sodB CDS COG0605 1509404 1509985 - [P] Superoxide dismutase 748 ydhO CDS COG0791 1510112 1510966 - [M] Cell wall-associated hydrolases (invasion-associated proteins) 749 ydhD CDS COG0278 1511268 1511615 + [O] Glutaredoxin-related protein 750 rnt CDS COG0847 1511693 1512340 - [L] DNA polymerase III, epsilon subunit and 751 gloA CDS COG0346 1512441 1512848 - [E] Lactoylglutathione lyase and related lyases nemA CDS COG1902 1512917 1514014 - [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family ydhM CDS COG1309 1514073 1514672 - [K] Transcriptional regulator 752 ydhL CDS COG3313 1514775 1515014 + [R] Predicted Fe-S protein ydhF CDS COG4989 1515065 1515961 + [R] Predicted oxidoreductase 753 sodC_2 CDS COG2032 1516041 1516562 + [P] Cu/Zn superoxide dismutase 754 cds-NP_460404.1 CDS COG1289 1516538 1518577 - [S] Predicted membrane protein ydhJ CDS COG1566 1518577 1519473 - [V] Multidrug resistance efflux pump ydhI CDS NA 1519440 1519676 - NA 755 slyA CDS COG1846 1519871 1520311 + [K] Transcriptional regulators 756 slyB CDS COG3133 1520359 1520826 - [M] Outer membrane lipoprotein 757 ydhH CDS COG2377 1521098 1522219 + [O] Predicted molecular chaperone distantly related to 758 ydhA CDS COG3895 1522307 1522636 + [R] Predicted periplasmic protein pdxH CDS COG0259 1522695 1523351 + [H] Pyridoxamine-phosphate oxidase tyrS CDS COG0162 1523478 1524752 + [J] Tyrosyl-tRNA synthetase pdxY CDS COG2240 1524812 1525672 + [H] Pyridoxal/pyridoxine/pyridoxamine kinase 759 gst CDS COG0625 1525731 1526336 - [O] Glutathione S-transferase ydgR CDS COG3104 1526441 1527946 - [E] Dipeptide/tripeptide permease 760 nth CDS COG0177 1528548 1529183 - [L] Predicted EndoIII-related endonuclease ydgQ CDS COG4660 1529183 1529875 - [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE ydgP CDS COG4659 1529878 1530498 - [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfG ydgO CDS COG4658 1530502 1531560 - [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD cds-NP_460420.1 CDS COG4656 1531561 1533768 - [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC ydgM CDS COG2878 1533761 1534339 - [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfB cds-NP_460422.1 CDS COG4657 1534339 1534920 - [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 761 ydgK CDS NA 1534997 1535437 - NA 762 ydgT CDS NA 1535526 1535741 - NA 763 ydgJ CDS COG0673 1536297 1537412 + [R] Predicted dehydrogenases and related proteins 764 add CDS COG1816 1537487 1538488 - [F] Adenosine deaminase 765 ydgA CDS COG5339 1539192 1540700 - [S] Uncharacterized protein conserved in bacteria 766 manA CDS COG1482 1540803 1541978 - [G] Phosphomannose isomerase 767 fumA CDS COG1951 1542178 1543824 + [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class fumC CDS COG0114 1543992 1545395 + [C] Fumarase 768 tus CDS NA 1545392 1546321 - NA 769 rstB CDS COG2205 1546397 1547698 - [T] Osmosensitive K+ channel histidine kinase 770 cds-NP_460433.1 CDS COG1574 1547809 1549515 - [R] Predicted metal-dependent hydrolase with the TIM-barrel 771 ompN CDS COG3203 1549668 1550801 - [M] Outer membrane protein (porin) 772 rstA CDS COG0745 1551281 1552012 - [TK] Response regulators consisting of a CheY-like 773 ydgC CDS COG3136 1552139 1552474 + [R] Uncharacterized membrane protein required for alginate 774 ydgI CDS COG0531 1552536 1553918 - [E] Amino acid transporters 775 ydgH CDS NA 1554217 1555161 - NA 776 pntA CDS COG3288 1555688 1557217 + [C] NAD/NADP transhydrogenase alpha subunit pntB CDS COG1282 1557228 1558616 + [C] NAD/NADP transhydrogenase beta subunit 777 cds-NP_460441.1 CDS COG0628 1558791 1559825 - [R] Predicted permease 778 ydgF CDS COG2076 1560243 1560605 + [P] Membrane transporters of cations and cationic ydgE CDS COG2076 1560592 1560921 + [P] Membrane transporters of cations and cationic 779 cds-NP_460444.1 CDS COG3591 1560961 1561782 - [E] V8-like Glu-specific endopeptidase 780 cds-NP_460445.3 CDS COG2358 1562051 1562335 - [R] TRAP-type uncharacterized transport system, periplasmic component 781 ynfM CDS COG0477 1562694 1563947 - [GEPR] Permeases of the major facilitator superfamily 782 ynfL CDS COG0583 1564067 1564966 + [K] Transcriptional regulator 783 mlc CDS COG1940 1565094 1566314 + [KG] Transcriptional regulator/sugar kinase 784 ynfK CDS COG0132 1566440 1567135 + [H] Dethiobiotin synthetase 785 cds-NP_460450.3 CDS COG0038 1567091 1568380 - [P] Chloride channel protein EriC cds-NP_460451.1 CDS COG1125 1568516 1569664 - [E] ABC-type proline/glycine betaine transport systems, ATPase cds-NP_460452.1 CDS COG1174 1569664 1570311 - [E] ABC-type proline/glycine betaine transport systems, permease cds-NP_460453.1 CDS COG1732 1570321 1571223 - [M] Periplasmic glycine betaine/choline-binding (lipo)protein of an cds-NP_460454.1 CDS COG1174 1571252 1571962 - [E] ABC-type proline/glycine betaine transport systems, permease 786 ynfI CDS COG3381 1572267 1572881 - [R] Uncharacterized component of anaerobic dehydrogenases cds-NP_460456.1 CDS COG3302 1572924 1573781 - [R] DMSO reductase anchor subunit cds-NP_460457.1 CDS COG0437 1573783 1574400 - [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_460458.1 CDS COG0243 1574411 1576846 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing cds-NP_460459.1 CDS COG0243 1576945 1579386 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 787 ynfD CDS NA 1579540 1579848 - NA 788 ynfC CDS COG3209 1579943 1580662 + [M] Rhs family protein 789 speG CDS COG1670 1580703 1581263 - [J] Acetyltransferases, including N-acetylases of ribosomal proteins ynfB CDS ROG5185 1581299 1581640 - NA 790 ynfA CDS COG1742 1581793 1582119 + [S] Uncharacterized conserved protein 791 rspA CDS COG4948 1582241 1583455 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of rspB CDS COG1063 1583466 1584485 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases ydfJ CDS COG0477 1584539 1585516 + [GEPR] Permeases of the major facilitator superfamily 792 ydfI CDS COG0246 1586062 1587528 + [G] Mannitol-1-phosphate/altronate dehydrogenases 793 ydfZ CDS NA 1587595 1587798 - NA 794 ydfH CDS COG1802 1587979 1588665 - [K] Transcriptional regulators 795 ydfG CDS COG4221 1588795 1589541 - [R] Short-chain alcohol dehydrogenase of unknown specificity 796 dcp CDS COG0339 1589680 1591722 + [E] Zn-dependent oligopeptidases 797 cds-NP_460473.1 CDS COG3729 1592067 1592249 + [R] General stress protein 798 ydeJ CDS COG1546 1592369 1592896 - [R] Uncharacterized protein (competence- and mitomycin-induced) 799 ydeI CDS COG3111 1593323 1593715 + [S] Uncharacterized conserved protein 800 ydeE CDS NA 1594407 1595594 - NA 801 ydeD CDS COG0697 1595822 1596724 + [GER] Permeases of the drug/metabolite transporter (DMT) 802 marB CDS NA 1596843 1597058 - NA marA CDS COG2207 1597087 1597521 - [K] AraC-type DNA-binding domain-containing proteins marR CDS COG1846 1597490 1597924 - [K] Transcriptional regulators 803 marC CDS COG2095 1598183 1598848 + [U] Multiple antibiotic transporter 804 ydeA CDS COG2814 1598895 1600085 - [G] Arabinose efflux permease 805 yneJ CDS COG0583 1600201 1601073 - [K] Transcriptional regulator 806 yneI CDS COG1012 1601176 1602564 + [C] NAD-dependent aldehyde dehydrogenases yneH CDS COG2066 1602637 1603563 + [E] Glutaminase yneG CDS ROG2377 1603563 1603922 + NA 807 cds-NP_460487.1 CDS COG3781 1604146 1605093 + [S] Predicted membrane protein 808 cds-NP_460488.1 CDS ROG3622 1605149 1605691 - NA 809 cds-NP_447948.1 CDS NA 1605540 1605866 + NA 810 cds-NP_460490.1 CDS COG3203 1606408 1607526 + [M] Outer membrane protein (porin) 811 cds-NP_460491.1 CDS COG0375 1607667 1608008 - [R] Zn finger protein HypA/HybF (possibly regulating cds-NP_460492.1 CDS ROG7299 1608021 1608908 - NA cds-NP_460493.1 CDS ROG0413 1608896 1609957 - NA cds-NP_460494.1 CDS ROG1104 1609975 1610385 - NA cds-NP_460495.1 CDS ROG2156 1610382 1610681 - NA cds-NP_460496.1 CDS COG0680 1610681 1611289 - [C] Ni,Fe-hydrogenase maturation factor cds-NP_460497.1 CDS COG1969 1611295 1612038 - [C] Ni,Fe-hydrogenase I cytochrome b subunit cds-NP_460498.1 CDS COG0374 1611989 1613791 - [C] Ni,Fe-hydrogenase I large subunit cds-NP_460499.1 CDS COG1740 1613794 1614897 - [C] Ni,Fe-hydrogenase I small subunit 812 cds-NP_460500.1 CDS COG3049 1615326 1616417 + [M] Penicillin V acylase and related amidases cds-NP_460501.1 CDS COG2186 1616463 1617254 + [K] Transcriptional regulators 813 cds-NP_460502.1 CDS COG1063 1617313 1618338 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases cds-NP_460503.1 CDS COG2271 1618313 1619599 - [G] Sugar phosphate permease 814 pqaA CDS COG4287 1619776 1621332 - [R] PhoPQ-activated pathogenicity-related protein 815 cds-NP_460505.1 CDS COG0477 1621402 1622643 - [GEPR] Permeases of the major facilitator superfamily cds-NP_460506.1 CDS COG0654 1622633 1624141 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 816 cds-NP_460507.1 CDS COG1846 1624186 1624674 + [K] Transcriptional regulators 817 cds-NP_460508.3 CDS COG0809 1624906 1625946 + [J] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 818 cds-NP_460509.1 CDS COG0251 1625998 1626387 - [J] Putative translation initiation inhibitor, yjgF family 819 cds-NP_460510.1 CDS COG2026 1626558 1626842 - [JD] Cytotoxic translational repressor of toxin-antitoxin stability cds-NP_460511.1 CDS COG2161 1626832 1627080 - [D] Antitoxin of toxin-antitoxin stability system 820 cds-NP_460512.1 CDS NA 1627912 1628820 + NA 821 cds-NP_460513.1 CDS NA 1630398 1631864 - NA 822 cds-NP_460514.1 CDS COG1609 1632123 1633130 + [K] Transcriptional regulators 823 cds-NP_460515.1 CDS COG1757 1633274 1634725 + [C] Na+/H+ antiporter cds-NP_460516.1 CDS COG1168 1634738 1635940 + [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and 824 cds-NP_460517.1 CDS COG1523 1636053 1638128 - [G] Type II secretory pathway, pullulanase PulA cds-NP_460518.1 CDS COG3280 1638185 1640713 - [G] Maltooligosyl trehalose synthase cds-NP_460519.1 CDS COG1523 1640710 1642494 - [G] Type II secretory pathway, pullulanase PulA 825 cds-NP_460520.1 CDS ROG3632 1642623 1643408 - NA 826 cds-NP_460521.1 CDS NA 1643551 1643880 - NA 827 osmC CDS COG1764 1644230 1644661 - [O] Predicted redox protein, regulator of disulfide 828 yddX CDS ROG0864 1645174 1645389 + NA 829 rpsV CDS NA 1645484 1645627 + NA 830 sfcA CDS COG0281 1645804 1647501 + [C] Malic enzyme 831 adhP CDS COG1064 1647787 1648797 + [R] Zn-dependent alcohol dehydrogenases 832 fdnI CDS COG2864 1648888 1649544 - [C] Cytochrome b subunit of formate dehydrogenase fdnH CDS COG0437 1649537 1650421 - [C] Fe-S-cluster-containing hydrogenase components 1 fdnG CDS COG0243 1650435 1653482 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 833 yddG CDS COG0697 1653817 1654641 + [GER] Permeases of the drug/metabolite transporter (DMT) 834 nmpC CDS COG3203 1655166 1656254 + [M] Outer membrane protein (porin) 835 cds-NP_460532.3 CDS COG3791 1656398 1656778 + [S] Uncharacterized conserved protein 836 smvA CDS COG0477 1656803 1658290 - [GEPR] Permeases of the major facilitator superfamily 837 cds-NP_460534.1 CDS COG1309 1658408 1658986 + [K] Transcriptional regulator 838 narU CDS COG2223 1659201 1660589 + [P] Nitrate/nitrite transporter narZ CDS COG5013 1660681 1664421 + [C] Nitrate reductase alpha subunit narY CDS COG1140 1664418 1665962 + [C] Nitrate reductase beta subunit narW CDS COG2180 1665962 1666657 + [C] Nitrate reductase delta subunit narV CDS COG2181 1666654 1667334 + [C] Nitrate reductase gamma subunit 839 yddE CDS COG0384 1667440 1668333 + [R] Predicted epimerase, PhzC/PhzF homolog 840 nhoA CDS COG2162 1668369 1669214 - [Q] Arylamine N-acetyltransferase 841 cds-NP_460542.1 CDS NA 1669498 1670130 - NA 842 ansP CDS COG1113 1670643 1672136 + [E] Gamma-aminobutyrate permease and related permeases 843 cds-NP_460544.1 CDS ROG7894 1672213 1672434 - NA 844 cds-NP_460545.1 CDS COG3391 1672579 1673640 - [S] Uncharacterized conserved protein 845 yncD CDS COG1629 1673904 1676024 + [P] Outer membrane receptor proteins, mostly Fe 846 yncC CDS COG1802 1676091 1676756 - [K] Transcriptional regulators 847 yncB CDS COG2130 1677090 1678160 - [R] Putative NADP-dependent oxidoreductases 848 yncA CDS COG1247 1678339 1678854 + [M] Sortase and related acyltransferases ydcZ CDS COG3238 1678854 1679303 + [S] Uncharacterized protein conserved in bacteria 849 ydcY CDS NA 1679308 1679541 - NA 850 srfA CDS ROG5046 1679765 1681084 + NA srfB CDS COG4457 1681089 1684070 + [S] Uncharacterized protein conserved in bacteria, putative srfC CDS COG4458 1684067 1686211 + [S] Uncharacterized protein conserved in bacteria, putative 851 ydcX CDS NA 1686256 1686519 - NA 852 ydcW CDS COG1012 1686828 1688273 - [C] NAD-dependent aldehyde dehydrogenases ydcR CDS COG1167 1688388 1689812 - [KE] Transcriptional regulators containing a DNA-binding HTH 853 pdgL CDS COG2173 1689948 1690718 - [M] D-alanyl-D-alanine dipeptidase 854 cds-NP_448018.1 CDS NA 1690977 1691207 - NA ugtL CDS NA 1691240 1691638 - NA 855 sifB CDS NA 1692175 1693125 + NA 856 yncJ CDS NA 1693399 1693629 + NA 857 ydcP CDS COG0826 1693630 1695594 - [O] Collagenase and related proteases ydcN CDS COG1396 1695673 1696209 - [K] Predicted transcriptional regulators 858 cds-NP_460565.1 CDS COG3135 1696300 1697478 + [Q] Uncharacterized protein involved in benzoate metabolism 859 cds-NP_460566.1 CDS ROG4587 1697532 1698200 - NA 860 tehB CDS COG0500 1698356 1698952 - [QR] SAM-dependent methyltransferases tehA CDS COG1275 1698939 1699952 - [P] Tellurite resistance protein and related permeases 861 ydcK CDS COG1208 1700059 1701039 + [MJ] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation 862 rimL CDS COG1670 1701036 1701575 - [J] Acetyltransferases, including N-acetylases of ribosomal proteins 863 cds-NP_460571.1 CDS COG1363 1701792 1702910 + [G] Cellulase M and related proteins cds-NP_460572.1 CDS COG3414 1702907 1703188 + [G] Phosphotransferase system, galactitol-specific IIB component cds-NP_460573.1 CDS COG3775 1703199 1704512 + [G] Phosphotransferase system, galactitol-specific IIC component cds-NP_460574.1 CDS COG0434 1704526 1705332 + [R] Predicted TIM-barrel enzyme 864 cds-NP_460575.1 CDS COG1762 1705464 1705901 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) cds-NP_460576.1 CDS COG0036 1705913 1706545 + [G] Pentose-5-phosphate-3-epimerase cds-NP_460577.1 CDS COG1349 1706561 1707352 + [KG] Transcriptional regulators of sugar metabolism cds-NP_460578.1 CDS COG0454 1707352 1707789 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 865 cds-NP_460579.1 CDS COG1304 1707836 1709038 - [C] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy cds-NP_460580.1 CDS COG2353 1709050 1709625 - [S] Uncharacterized conserved protein 866 ydcG CDS COG3131 1709821 1711476 - [P] Periplasmic glucans biosynthesis protein 867 cds-NP_460582.1 CDS COG2272 1711696 1713204 - [I] Carboxylesterase type B cds-NP_460583.1 CDS COG5383 1713253 1714596 - [S] Uncharacterized protein conserved in bacteria 868 ydcI CDS COG0583 1714889 1715812 + [K] Transcriptional regulator 869 trg CDS COG0840 1715873 1717498 - [NT] Methyl-accepting chemotaxis protein 870 cds-NP_460586.1 CDS COG1062 1717667 1718785 - [C] Zn-dependent alcohol dehydrogenases, class III cds-NP_460587.1 CDS COG1937 1718817 1719092 - [S] Uncharacterized protein conserved in bacteria 871 cds-NP_448047.1 CDS NA 1719615 1720016 + NA 872 cds-NP_460589.1 CDS NA 1720145 1720861 - NA 873 sseJ CDS COG3240 1721287 1722513 + [IR] Phospholipase/lecithinase/hemolysin 874 cds-NP_460591.1 CDS COG3326 1722634 1722978 - [S] Predicted membrane protein 875 cds-NP_460592.1 CDS COG0834 1723885 1724646 + [ET] ABC-type amino acid transport/signal transduction systems, cds-NP_460593.1 CDS COG0765 1724653 1725300 + [E] ABC-type amino acid transport system, permease cds-NP_460594.1 CDS COG1126 1725325 1726056 + [E] ABC-type polar amino acid transport system, cds-NP_460595.1 CDS COG0765 1726053 1726733 + [E] ABC-type amino acid transport system, permease 876 cds-NP_460596.1 CDS COG5305 1726870 1728420 + [S] Predicted membrane protein 877 cds-NP_460597.1 CDS NA 1729109 1729546 + NA 878 cybB CDS COG3038 1729817 1730347 - [C] Cytochrome B561 879 ydcF CDS COG1434 1730464 1731264 - [S] Uncharacterized conserved protein 880 hrpA CDS COG1643 1731328 1735230 - [L] HrpA-like helicases 881 acpD CDS COG1182 1735431 1736036 + [I] Acyl carrier protein phosphodiesterase 882 cds-NP_460602.1 CDS COG3791 1736033 1736482 - [S] Uncharacterized conserved protein 883 ydbL CDS COG3784 1736625 1736948 - [S] Uncharacterized protein conserved in bacteria ynbE CDS ROG0130 1736956 1737147 - NA ydbH CDS ROG3879 1737147 1739783 - NA 884 ldhA CDS COG1052 1740023 1741012 + [CHR] Lactate dehydrogenase and related dehydrogenases 885 hslJ CDS COG3187 1741123 1741533 + [O] Heat shock protein 886 cds-NP_460608.2 CDS COG3042 1741577 1741843 - [R] Putative hemolysin 887 cds-NP_460609.1 CDS NA 1741759 1742058 + NA nifJ CDS COG0674 1742119 1745643 + [C] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, 888 ynaF CDS COG0589 1746125 1746559 + [T] Universal stress protein UspA and related 889 cds-NP_460612.1 CDS COG2076 1746609 1746947 - [P] Membrane transporters of cations and cationic 890 ydaO CDS COG0037 1747303 1748238 + [D] Predicted ATPase of the PP-loop superfamily 891 dbpA CDS COG0513 1748282 1749655 - [LKJ] Superfamily II DNA and RNA helicases 892 cds-NP_460615.1 CDS COG0598 1750142 1751125 - [P] Mg2+ and Co2+ transporters 893 cds-NP_460616.1 CDS COG0840 1751271 1752425 - [NT] Methyl-accepting chemotaxis protein 894 ydaL CDS COG2840 1752836 1753399 - [S] Uncharacterized protein conserved in bacteria 895 ogt CDS COG0350 1753657 1754172 + [L] Methylated DNA-protein cysteine methyltransferase 896 fnr CDS COG0664 1754326 1755120 + [T] cAMP-binding proteins - catabolite gene activator ydaA CDS COG0589 1755271 1756218 + [T] Universal stress protein UspA and related 897 ynaJ CDS COG0601 1756273 1756527 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 898 ynaI CDS COG0668 1756766 1757797 + [M] Small-conductance mechanosensitive channel 899 cds-NP_460623.1 CDS COG1396 1757883 1758485 - [K] Predicted transcriptional regulators 900 cds-NP_460624.1 CDS COG3382 1758529 1759215 + [S] Uncharacterized conserved protein 901 cds-NP_460625.1 CDS COG2077 1759687 1760244 - [O] Peroxiredoxin 902 cds-NP_460626.1 CDS ROG3089 1760343 1761173 - NA cds-NP_460627.1 CDS ROG3089 1761194 1763176 - NA 903 cds-NP_460628.1 CDS NA 1763251 1764096 - NA 904 cds-NP_460629.1 CDS COG2207 1764390 1765247 + [K] AraC-type DNA-binding domain-containing proteins 905 cds-NP_448089.1 CDS ROG4817 1765638 1766747 + NA 906 cds-NP_460631.3 CDS ROG7894 1766961 1767215 - NA 907 cds-NP_460632.1 CDS COG1309 1767326 1767916 - [K] Transcriptional regulator 908 cds-NP_460633.1 CDS COG1028 1767994 1768707 + [IQR] Dehydrogenases with different specificities (related to 909 cds-NP_460634.1 CDS COG0656 1768798 1769667 - [R] Aldo/keto reductases, related to diketogulonate reductase 910 cds-NP_460635.1 CDS COG0583 1769941 1770846 - [K] Transcriptional regulator 911 cds-NP_460636.1 CDS NA 1770965 1771894 + NA 912 mppA CDS COG4166 1771991 1773604 - [E] ABC-type oligopeptide transport system, periplasmic component 913 ycjI CDS COG2866 1773794 1774522 + [E] Predicted carboxypeptidase 914 ycjG CDS COG4948 1774497 1775462 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of 915 tpx CDS COG2077 1775578 1776084 + [O] Peroxiredoxin 916 tyrR CDS COG3283 1776174 1777715 - [KE] Transcriptional regulator of aromatic amino acids ycjF CDS COG3768 1777863 1778924 - [S] Predicted membrane protein ycjX CDS COG3106 1778921 1780324 - [R] Predicted ATPase 917 pspE CDS COG0607 1780467 1780781 - [P] Rhodanese-related sulfurtransferase 918 pspD CDS ROG8295 1780857 1781075 - NA pspC CDS COG1983 1781098 1781457 - [KT] Putative stress-responsive transcriptional regulator pspB CDS ROG0730 1781457 1781681 - NA pspA CDS COG1842 1781741 1782409 - [KT] Phage shock protein A (IM30), suppresses 919 pspF CDS COG1221 1782580 1783560 + [KT] Transcriptional regulators containing an AAA-type ATPase 920 sapA CDS COG0747 1783672 1785321 + [E] ABC-type dipeptide transport system, periplasmic component sapB CDS COG4168 1785318 1786283 + [V] ABC-type antimicrobial peptide transport system, permease sapC CDS COG4171 1786270 1787160 + [V] ABC-type antimicrobial peptide transport system, permease sapD CDS COG4170 1787160 1788152 + [V] ABC-type antimicrobial peptide transport system, ATPase sapF CDS COG4167 1788154 1788960 + [V] ABC-type antimicrobial peptide transport system, ATPase 921 cds-NP_460655.1 CDS NA 1789089 1789685 - NA 922 cds-NP_460656.1 CDS NA 1790151 1791524 - NA 923 cds-NP_460657.1 CDS NA 1791559 1791738 + NA ycjE CDS NA 1791713 1792012 + NA 924 fabI CDS COG0623 1792130 1792918 + [I] Enoyl-[acyl-carrier-protein] reductase (NADH) 925 yciW CDS COG4950 1793118 1794098 + [S] Uncharacterized protein conserved in bacteria 926 rnb CDS COG4776 1794340 1796274 + [K] Exoribonuclease II 927 yciR CDS COG5001 1796536 1798518 + [T] Predicted signal transduction protein containing a 928 yciT CDS COG1349 1798906 1799658 + [KG] Transcriptional regulators of sugar metabolism 929 osmB CDS ROG6708 1799917 1800135 + NA 930 yciH CDS COG0023 1800255 1800581 - [J] Translation initiation factor 1 (eIF-1/SUI1) and pyrF CDS COG0284 1800581 1801318 - [F] Orotidine-5'-phosphate decarboxylase 931 yciM CDS COG2956 1801509 1802678 - [G] Predicted N-acetylglucosaminyl transferase yciS CDS COG3771 1802685 1802993 - [S] Predicted membrane protein 932 pgpB CDS COG0671 1803143 1803907 - [I] Membrane-associated phospholipid phosphatase 933 ribA CDS COG0807 1804103 1804693 + [H] GTP cyclohydrolase II 934 acnA CDS COG1048 1804749 1807424 - [C] Aconitase A 935 cysB CDS COG0583 1808401 1809375 - [K] Transcriptional regulator 936 topA CDS COG0550 1809786 1812383 - [L] Topoisomerase IA 937 yciN CDS NA 1812786 1813037 + NA 938 sohB CDS COG0616 1813079 1814125 - [OU] Periplasmic serine proteases (ClpP class) 939 yciK CDS COG1028 1814363 1815124 + [IQR] Dehydrogenases with different specificities (related to btuR CDS COG2109 1815121 1815711 + [H] ATP:corrinoid adenosyltransferase 940 yciL CDS COG1187 1815798 1816673 - [J] 16S rRNA uridine-516 pseudouridylate synthase and yciO CDS COG0009 1816774 1817394 - [J] Putative translation factor (SUA5) trpH CDS COG0613 1817402 1818283 - [R] Predicted metal-dependent phosphoesterases (PHP family) 941 trpL CDS NA 1818405 1818449 + NA 942 trpE CDS COG0147 1818544 1820106 + [EH] Anthranilate/para-aminobenzoate synthases component I trpD CDS COG0547 1820106 1821701 + [E] Anthranilate phosphoribosyltransferase trpC CDS COG0134 1821705 1823063 + [E] Indole-3-glycerol phosphate synthase trpB CDS COG0133 1823073 1824266 + [E] Tryptophan synthase beta chain trpA CDS COG0159 1824266 1825072 + [E] Tryptophan synthase alpha chain 943 yciG CDS COG3729 1825552 1825734 + [R] General stress protein yciF CDS COG3685 1825824 1826327 + [S] Uncharacterized protein conserved in bacteria yciE CDS COG3685 1826401 1826907 + [S] Uncharacterized protein conserved in bacteria cds-NP_460690.1 CDS COG3546 1826927 1827805 + [P] Mn-containing catalase 944 ompW CDS COG3047 1827887 1828525 - [M] Outer membrane protein W 945 cds-NP_460692.1 CDS COG0727 1828863 1829267 + [R] Predicted Fe-S-cluster oxidoreductase yciC CDS ROG3022 1829293 1830036 + NA yciB CDS COG2917 1830093 1830632 + [D] Intracellular septation protein A 946 yciA CDS COG1607 1830793 1831194 + [I] Acyl-CoA hydrolase 947 tonB CDS COG0810 1831254 1831982 - [M] Periplasmic protein TonB, links inner and 948 yciI CDS COG2350 1832206 1832502 + [S] Uncharacterized protein conserved in bacteria 949 cls CDS COG1502 1832862 1834322 + [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes yciU CDS COG3099 1834356 1834685 + [S] Uncharacterized protein conserved in bacteria 950 cds-NP_460700.1 CDS COG1226 1834733 1835569 - [P] Kef-type K+ transport systems, predicted NAD-binding oppF CDS COG4608 1835617 1836621 - [E] ABC-type oligopeptide transport system, ATPase component oppD CDS COG0444 1836618 1837625 - [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component oppC CDS COG1173 1837637 1838545 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppB CDS COG0601 1838560 1839480 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppA CDS COG4166 1839602 1841350 - [E] ABC-type oligopeptide transport system, periplasmic component 951 cds-NP_448165.1 CDS NA 1841301 1841615 + NA 952 ychE CDS COG2095 1841998 1842645 - [U] Multiple antibiotic transporter 953 adhE CDS COG1454 1843122 1845800 + [C] Alcohol dehydrogenase, class IV 954 tdk CDS COG1435 1845997 1846614 - [F] Thymidine kinase 955 hns CDS COG2916 1847277 1847690 + [R] DNA-binding protein H-NS 956 galU CDS COG1210 1847822 1848730 - [M] UDP-glucose pyrophosphorylase 957 hnr CDS COG2204 1848933 1849946 - [T] Response regulator containing CheY-like receiver, AAA-type 958 ychK CDS COG1752 1850037 1850942 - [R] Predicted esterase of the alpha-beta hydrolase 959 ychJ CDS COG3012 1851053 1851511 + [S] Uncharacterized protein conserved in bacteria purU CDS COG0788 1851562 1852404 + [F] Formyltetrahydrofolate hydrolase 960 tyrT tRNA NA 1852564 1852645 + NA tyrV tRNA NA 1852853 1852934 + NA 961 cds-NP_460716.1 CDS COG0790 1853720 1855249 - [R] FOG: TPR repeat, SEL1 subfamily 962 narI CDS COG2181 1855491 1856168 - [C] Nitrate reductase gamma subunit narJ CDS COG2180 1856168 1856878 - [C] Nitrate reductase delta subunit narH CDS COG1140 1856875 1858410 - [C] Nitrate reductase beta subunit narG CDS COG5013 1858407 1862150 - [C] Nitrate reductase alpha subunit narK CDS COG2223 1862538 1863935 - [P] Nitrate/nitrite transporter 963 narX CDS COG3850 1864276 1866072 + [T] Signal transduction histidine kinase, nitrate/nitrite-specific narL CDS COG2197 1866065 1866715 + [TK] Response regulator containing a CheY-like receiver 964 ychP CDS ROG3089 1866716 1868140 - NA 965 ychN CDS COG1553 1868317 1868670 + [P] Uncharacterized conserved protein involved in intracellular 966 chaB CDS COG4572 1868750 1868980 - [R] Putative cation transport regulator 967 chaA CDS COG0387 1869247 1870347 + [P] Ca2+/H+ antiporter 968 kdsA CDS COG2877 1870401 1871255 - [M] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase ychA CDS COG2912 1871293 1872102 - [S] Uncharacterized conserved protein sirC CDS COG3094 1872106 1872495 - [S] Uncharacterized protein conserved in bacteria hemK CDS COG2890 1872492 1873325 - [J] Methylase of polypeptide chain release factors prfA CDS COG0216 1873325 1874407 - [J] Protein chain release factor A hemA CDS COG0373 1874448 1875704 - [H] Glutamyl-tRNA reductase 969 lolB CDS COG3017 1876018 1876641 + [M] Outer membrane lipoprotein involved in outer ipk CDS COG1947 1876638 1877489 + [I] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase prsA CDS COG0462 1877755 1878702 + [FE] Phosphoribosylpyrophosphate synthetase 970 ychM CDS COG0659 1878851 1880512 + [P] Sulfate permease and related transporters (MFS 971 ychH CDS NA 1880557 1880835 - NA 972 pth CDS COG0193 1881087 1881695 + [J] Peptidyl-tRNA hydrolase ychF CDS COG0012 1881812 1882903 + [J] Predicted GTPase, probable translation factor 973 cds-NP_460741.1 CDS NA 1883062 1884327 - NA 974 cds-NP_460742.1 CDS COG1740 1884822 1885940 + [C] Ni,Fe-hydrogenase I small subunit cds-NP_460743.1 CDS COG0374 1885937 1887730 + [C] Ni,Fe-hydrogenase I large subunit cds-NP_460744.1 CDS COG1969 1887749 1888480 + [C] Ni,Fe-hydrogenase I cytochrome b subunit cds-NP_460745.1 CDS COG0680 1888477 1889073 + [C] Ni,Fe-hydrogenase maturation factor cds-NP_460746.1 CDS ROG1104 1889063 1889467 + NA cds-NP_460747.1 CDS ROG0413 1889464 1890312 + NA 975 cds-NP_460748.1 CDS COG1271 1890387 1891931 + [C] Cytochrome bd-type quinol oxidase, subunit 1 cds-NP_460749.1 CDS COG1294 1891943 1893079 + [C] Cytochrome bd-type quinol oxidase, subunit 2 cds-NP_460750.1 CDS ROG3054 1893092 1893181 + NA 976 cds-NP_460751.1 CDS COG0334 1893525 1894850 + [E] Glutamate dehydrogenase/leucine dehydrogenase treA CDS COG1626 1895064 1896776 + [G] Neutral trehalase 977 ymgE CDS COG2261 1896839 1897093 - [S] Predicted membrane protein 978 ycgR CDS COG5581 1897262 1897996 + [M] Predicted glycosyltransferase 979 emtA CDS COG0741 1898010 1898621 - [M] Soluble lytic murein transglycosylase and related 980 ycgQ CDS COG1619 1898792 1899706 + [V] Uncharacterized proteins, homologs of microcin C7 981 ycgO CDS COG3263 1899803 1901536 + [P] NhaP-type Na+/H+ and K+/H+ antiporters with 982 dadX CDS COG0787 1901599 1902669 - [M] Alanine racemase dadA CDS COG0665 1902683 1903981 - [E] Glycine/D-amino acid oxidases (deaminating) 983 ycgB CDS COG2719 1904304 1905836 + [S] Uncharacterized conserved protein 984 fadR CDS COG2186 1905883 1906602 - [K] Transcriptional regulators 985 nhaB CDS COG3067 1906822 1908366 + [P] Na+/H+ antiporter dsbB CDS COG1495 1908508 1909038 + [O] Disulfide bond formation protein DsbB 986 cds-NP_460764.1 CDS COG3615 1909147 1909488 + [P] Uncharacterized protein/domain, possibly involved in tellurite 987 cds-NP_460765.1 CDS NA 1909560 1909733 - NA 988 cds-NP_460766.1 CDS NA 1909925 1910062 - NA 989 ycgN CDS COG2983 1910414 1910875 - [S] Uncharacterized conserved protein ycgM CDS COG0179 1910953 1911612 - [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) ycgL CDS COG3100 1911662 1911994 - [S] Uncharacterized protein conserved in bacteria 990 minC CDS COG0850 1912081 1912788 + [D] Septum formation inhibitor minD CDS COG2894 1912812 1913624 + [D] Septum formation inhibitor-activating ATPase minE CDS COG0851 1913628 1913894 + [D] Septum formation topological specificity factor 991 rnd CDS COG0349 1914016 1915143 - [J] Ribonuclease D fadD CDS COG0318 1915216 1916901 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 992 slp CDS COG3065 1917106 1917687 - [M] Starvation-inducible outer membrane lipoprotein yeaZ CDS COG1214 1917759 1918454 - [O] Inactive homolog of metal-dependent proteases, putative yoaA CDS COG1199 1918512 1920422 - [KL] Rad3-related DNA helicases 993 yoaB CDS COG0251 1920553 1920897 + [J] Putative translation initiation inhibitor, yjgF family 994 yoaH CDS COG3140 1920903 1921082 - [S] Uncharacterized protein conserved in bacteria 995 pabB CDS COG0147 1921163 1922527 + [EH] Anthranilate/para-aminobenzoate synthases component I yeaB CDS COG0494 1922531 1923109 + [LR] NTP pyrophosphohydrolases including oxidative damage repair 996 sdaA CDS COG1760 1923373 1924737 + [E] L-serine deaminase cds-NP_460783.3 CDS COG2200 1924773 1926476 + [T] FOG: EAL domain 997 yoaE CDS COG0861 1926498 1928057 - [P] Membrane protein TerC, possibly involved in cds-NP_460785.1 CDS NA 1928045 1928380 - NA 998 manX CDS COG3444 1928530 1929498 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB manY CDS COG3715 1929551 1930351 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC manZ CDS COG3716 1930355 1931215 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID cds-NP_460789.1 CDS COG4811 1931273 1931743 + [S] Predicted membrane protein 999 yebN CDS COG1971 1932087 1932707 + [S] Predicted membrane protein 1000 rrmA CDS COG0500 1932704 1933513 - [QR] SAM-dependent methyltransferases cds-NP_460792.1 CDS COG0768 1933579 1935324 - [M] Cell division protein FtsI/penicillin-binding protein 2 1001 cspC CDS COG1278 1935544 1935753 - [K] Cold shock proteins yobF CDS NA 1935766 1935909 - NA 1002 cds-NP_460795.1 CDS ROG0210 1936558 1936845 - NA 1003 yobG CDS NA 1936916 1937059 - NA 1004 cds-NP_460797.1 CDS ROG7461 1937217 1937456 + NA 1005 kdgR CDS COG1414 1937668 1938459 - [K] Transcriptional regulator 1006 cds-NP_460799.1 CDS COG2211 1938635 1940008 + [G] Na+/melibiose symporter and related transporters 1007 htpX CDS COG0501 1940056 1940937 - [O] Zn-dependent protease with chaperone function 1008 prc CDS COG0793 1941131 1943179 - [M] Periplasmic protease proQ CDS COG3109 1943199 1943885 - [T] Activator of osmoprotectant transporter ProP yebR CDS COG1956 1943983 1944567 - [T] GAF domain-containing protein 1009 yebS CDS COG2995 1944609 1945892 + [S] Uncharacterized paraquat-inducible protein A cds-NP_460805.1 CDS COG3008 1945855 1948494 + [R] Paraquat-inducible protein B 1010 yebU CDS COG0144 1948572 1950011 + [J] tRNA and rRNA cytosine-C5-methylases 1011 cds-NP_460807.1 CDS NA 1950126 1950365 + NA 1012 yebW CDS NA 1950476 1950667 + NA 1013 prpA CDS NA 1950686 1951336 - NA 1014 cds-NP_460810.1 CDS NA 1951560 1951724 - NA 1015 sopE2 CDS NA 1952009 1952731 - NA 1016 cds-NP_460812.1 CDS COG5562 1953415 1953810 + [R] Phage envelope protein 1017 cds-NP_460813.1 CDS COG0454 1955004 1955423 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1018 cds-NP_460814.1 CDS NA 1955793 1956062 + NA 1019 cds-NP_460815.3 CDS NA 1956228 1956368 + NA 1020 cds-NP_448275.1 CDS COG3328 1956851 1957708 - [L] Transposase and inactivated derivatives 1021 cds-NP_448276.1 CDS ROG3079 1957832 1958200 + NA 1022 pagO CDS COG0697 1959504 1960418 + [GER] Permeases of the drug/metabolite transporter (DMT) 1023 cds-NP_460819.1 CDS NA 1960551 1960709 + NA cds-NP_460820.1 CDS COG1495 1960719 1961333 + [O] Disulfide bond formation protein DsbB 1024 cds-NP_448280.1 CDS COG1961 1961660 1961785 - [L] Site-specific recombinases, DNA invertase Pin homologs 1025 pagK CDS NA 1963176 1963376 + NA 1026 mig-3 CDS NA 1963473 1964354 - NA 1027 cds-NP_460824.1 CDS NA 1965080 1965247 + NA 1028 cds-NP_460825.1 CDS NA 1965504 1966037 - NA cds-NP_460826.1 CDS COG3179 1966091 1966378 - [R] Predicted chitinase 1029 cds-NP_460827.1 CDS ROG6166 1966511 1967005 + NA cds-NP_448287.1 CDS NA 1967023 1967919 + NA 1030 cds-NP_460829.1 CDS NA 1968116 1968235 - NA cds-NP_460830.1 CDS NA 1968293 1968646 - NA cds-NP_460831.1 CDS COG1276 1968663 1969538 - [P] Putative copper export protein yobA CDS COG2372 1969539 1969913 - [R] Uncharacterized protein, homolog of Cu resistance 1031 holE CDS NA 1970051 1970281 + NA 1032 cds-NP_460834.1 CDS NA 1970389 1971045 + NA exoX CDS COG0847 1971069 1971767 + [L] DNA polymerase III, epsilon subunit and 1033 ptrB CDS COG1770 1971802 1973853 - [E] Protease II 1034 yebE CDS COG2979 1974066 1974725 - [S] Uncharacterized protein conserved in bacteria 1035 yebF CDS NA 1974819 1975172 - NA 1036 yebG CDS COG3141 1975240 1975530 - [S] Uncharacterized protein conserved in bacteria 1037 purT CDS COG0027 1975661 1976839 + [F] Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) 1038 eda CDS COG0800 1976939 1977580 - [G] 2-keto-3-deoxy-6-phosphogluconate aldolase edd CDS COG0129 1977618 1979429 - [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase zwf CDS COG0364 1979664 1981139 - [G] Glucose-6-phosphate 1-dehydrogenase 1039 yebK CDS COG1737 1981481 1982350 + [K] Transcriptional regulators 1040 pykA CDS COG0469 1982474 1983916 + [G] Pyruvate kinase 1041 msbB CDS COG1560 1983989 1984960 - [M] Lauroyl/myristoyl acyltransferase 1042 yebA CDS COG0739 1985077 1986396 - [M] Membrane proteins related to metalloendopeptidases znuA CDS COG4531 1986412 1987413 - [P] ABC-type Zn2+ transport system, periplasmic component/surface 1043 znuC CDS COG1121 1987384 1988190 + [P] ABC-type Mn/Zn transport systems, ATPase component znuB CDS COG1108 1988187 1988972 + [P] ABC-type Mn2+/Zn2+ transport systems, permease components 1044 ruvB CDS COG2255 1989051 1990061 - [L] Holliday junction resolvasome, helicase subunit ruvA CDS COG0632 1990070 1990681 - [L] Holliday junction resolvasome, DNA-binding subunit 1045 cds-NP_460853.1 CDS ROG5851 1991101 1991997 + NA 1046 yebB CDS ROG3369 1992624 1993223 + NA 1047 ruvC CDS COG0817 1993225 1993746 - [L] Holliday junction resolvasome, endonuclease subunit yebC CDS COG0217 1993783 1994523 - [S] Uncharacterized conserved protein ntpA CDS COG1051 1994553 1995005 - [F] ADP-ribose pyrophosphatase 1048 aspS CDS COG0173 1995108 1996880 - [J] Aspartyl-tRNA synthetase 1049 yecD CDS COG1335 1997205 1997771 + [Q] Amidases related to nicotinamidase yecE CDS COG1801 1997768 1998586 + [S] Uncharacterized conserved protein yecN CDS COG3788 1998639 1999034 + [R] Uncharacterized relative of glutathione S-transferase, MAPEG yecO CDS COG0500 1999075 1999818 + [QR] SAM-dependent methyltransferases yecP CDS COG0500 1999815 2000786 + [QR] SAM-dependent methyltransferases 1050 cutC CDS COG3142 2001022 2001768 - [P] Uncharacterized protein involved in copper resistance yecM CDS COG3102 2001788 2002357 - [S] Uncharacterized protein conserved in bacteria 1051 argS CDS COG0018 2002594 2004327 + [J] Arginyl-tRNA synthetase 1052 cds-NP_460867.1 CDS COG0768 2004516 2006387 + [M] Cell division protein FtsI/penicillin-binding protein 2 1053 cds-NP_460868.1 CDS COG4225 2006441 2007580 - [R] Predicted unsaturated glucuronyl hydrolase involved in 1054 flhE CDS NA 2007817 2008209 - NA flhA CDS COG1298 2008209 2010287 - [NU] Flagellar biosynthesis pathway, component FlhA flhB CDS COG1377 2010280 2011431 - [NU] Flagellar biosynthesis pathway, component FlhB cheZ CDS COG3143 2011625 2012269 - [NT] Chemotaxis protein cheY CDS COG0784 2012280 2012669 - [T] FOG: CheY-like receiver cheB CDS COG2201 2012687 2013736 - [NT] Chemotaxis response regulator containing a CheY-like cheR CDS COG1352 2013733 2014599 - [NT] Methylase of chemotaxis methyl-accepting proteins cheM CDS COG0840 2014753 2016414 - [NT] Methyl-accepting chemotaxis protein cheW CDS COG0835 2016651 2017154 - [NT] Chemotaxis signal transduction protein cheA CDS COG0643 2017175 2019190 - [NT] Chemotaxis protein histidine kinase and related motB CDS COG1360 2019195 2020124 - [N] Flagellar motor protein motA CDS COG1291 2020121 2021008 - [N] Flagellar motor component 1055 flhC CDS ROG0388 2021133 2021717 - NA flhD CDS ROG0481 2021714 2022064 - NA 1056 cds-NP_448342.1 CDS NA 2022738 2022854 + NA yecG CDS COG0589 2022851 2023279 + [T] Universal stress protein UspA and related 1057 otsA CDS COG0380 2023297 2024718 - [G] Trehalose-6-phosphate synthase otsB CDS COG1877 2024693 2025496 - [G] Trehalose-6-phosphatase 1058 araH CDS COG0693 2026129 2026686 - [R] Putative intracellular protease/amidase 1059 ftnB CDS COG1528 2027237 2027740 + [P] Ferritin-like protein 1060 cds-NP_460889.1 CDS COG0698 2027919 2028557 - [G] Ribose 5-phosphate isomerase RpiB 1061 cds-NP_460890.1 CDS NA 2028813 2029148 + NA 1062 ftn CDS COG1528 2029388 2029885 + [P] Ferritin-like protein 1063 yecH CDS ROG7097 2029931 2030170 - NA 1064 tyrP CDS COG0814 2030397 2031608 + [E] Amino acid permeases 1065 yecA CDS COG3318 2031683 2032348 - [R] Predicted metal-binding protein related to the 1066 cds-NP_460895.1 CDS NA 2032586 2032912 - NA 1067 cds-NP_460896.1 CDS NA 2033125 2034564 - NA 1068 cds-NP_460897.1 CDS NA 2034777 2035109 - NA 1069 leuZ tRNA NA 2035363 2035446 - NA cysT tRNA NA 2035461 2035531 - NA glyW tRNA NA 2035587 2035659 - NA 1070 pgsA CDS COG0558 2035810 2036358 - [I] Phosphatidylglycerophosphate synthase uvrC CDS COG0322 2036415 2038247 - [L] Nuclease subunit of the excinuclease complex uvrY CDS COG2197 2038244 2038900 - [TK] Response regulator containing a CheY-like receiver 1071 cds-NP_448360.1 CDS NA 2039212 2039367 + NA yecF CDS NA 2039364 2039588 + NA 1072 sdiA CDS COG2771 2039655 2040377 - [K] DNA-binding HTH domain-containing proteins 1073 yecC CDS COG1126 2040609 2041361 - [E] ABC-type polar amino acid transport system, yecS CDS COG0765 2041358 2042026 - [E] ABC-type amino acid transport system, permease yedO CDS COG2515 2042047 2043033 - [E] 1-aminocyclopropane-1-carboxylate deaminase 1074 fliY CDS COG0834 2043187 2043987 - [ET] ABC-type amino acid transport/signal transduction systems, 1075 fliZ CDS NA 2044134 2044685 - NA fliA CDS COG1191 2044744 2045463 - [K] DNA-directed RNA polymerase specialized sigma subunit 1076 tnpA_2 CDS COG1943 2045732 2046190 - [L] Transposase and inactivated derivatives 1077 fliB CDS NA 2046371 2047576 - NA 1078 fliC CDS COG1344 2047655 2049142 - [N] Flagellin and related hook-associated proteins 1079 fliD CDS COG1345 2049399 2050802 + [N] Flagellar capping protein fliS CDS COG1516 2050817 2051224 + [NUO] Flagellin-specific chaperone FliS fliT CDS ROG0925 2051224 2051592 + NA 1080 amyA CDS NA 2051664 2053148 + NA 1081 yedD CDS ROG2634 2053188 2053613 - NA 1082 yedE CDS COG2391 2053739 2055004 + [R] Predicted transporter component yedF CDS COG0425 2055001 2055234 + [O] Predicted redox protein, regulator of disulfide 1083 cds-NP_448379.1 CDS NA 2055499 2055885 + NA 1084 fliE CDS COG1677 2056005 2056319 - [NU] Flagellar hook-basal body protein 1085 fliF CDS COG1766 2056536 2058218 + [NU] Flagellar biosynthesis/type III secretory pathway lipoprotein fliG CDS COG1536 2058211 2059206 + [N] Flagellar motor switch protein fliH CDS COG1317 2059199 2059906 + [NU] Flagellar biosynthesis/type III secretory pathway protein fliI CDS COG1157 2059906 2061276 + [NU] Flagellar biosynthesis/type III secretory pathway ATPase fliJ CDS COG2882 2061298 2061741 + [NUO] Flagellar biosynthesis chaperone fliK CDS COG3144 2061738 2062955 + [N] Flagellar hook-length control protein fliL CDS COG1580 2063060 2063527 + [N] Flagellar basal body-associated protein fliM CDS COG1868 2063532 2064536 + [N] Flagellar motor switch protein fliN CDS COG1886 2064533 2064946 + [NU] Flagellar motor switch/type III secretory pathway fliO CDS COG3190 2064946 2065323 + [N] Flagellar biogenesis protein fliP CDS COG1338 2065323 2066060 + [NU] Flagellar biosynthesis pathway, component FliP fliQ CDS COG1987 2066070 2066339 + [NU] Flagellar biosynthesis pathway, component FliQ fliR CDS COG1684 2066348 2067142 + [NU] Flagellar biosynthesis pathway, component FliR 1086 rcsA CDS COG2771 2067424 2068047 + [K] DNA-binding HTH domain-containing proteins 1087 yodD CDS NA 2068409 2068636 + NA 1088 yedP CDS COG3769 2068946 2069761 + [R] Predicted hydrolase (HAD superfamily) 1089 cds-NP_460938.1 CDS COG2199 2069740 2071452 - [T] FOG: GGDEF domain 1090 cds-NP_460939.3 CDS COG5475 2071617 2071862 - [S] Uncharacterized small protein yedI CDS COG2354 2071879 2072790 - [S] Uncharacterized protein conserved in bacteria 1091 yedA CDS COG0697 2072966 2073886 + [GER] Permeases of the drug/metabolite transporter (DMT) 1092 vsr CDS COG3727 2073875 2074345 - [L] DNA G:T-mismatch repair endonuclease dcm CDS COG0270 2074326 2075756 - [L] Site-specific DNA methylase 1093 yedJ CDS COG1418 2075830 2076525 - [R] Predicted HD superfamily hydrolase 1094 cds-NP_460945.1 CDS COG0531 2076617 2076916 - [E] Amino acid transporters 1095 ompS CDS COG3203 2077566 2078762 + [M] Outer membrane protein (porin) 1096 cspB CDS COG1278 2079222 2079434 - [K] Cold shock proteins 1097 umuC CDS COG0389 2079889 2081157 - [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair umuD CDS COG1974 2081160 2081579 - [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 1098 cds-NP_460950.1 CDS NA 2081706 2081867 - NA 1099 serU tRNA NA 2082174 2082260 - NA 1100 yeeI CDS COG3228 2082348 2083145 + [S] Uncharacterized protein conserved in bacteria 1101 asnT tRNA NA 2083247 2083319 + NA 1102 asnT_2 tRNA NA 2084217 2084289 + NA 1103 cds-NP_460952.1 CDS NA 2084455 2084928 + NA 1104 cds-NP_448412.1 CDS ROG1837 2085403 2086101 + NA 1105 cds-NP_460954.1 CDS COG2849 2086918 2088612 + [S] Uncharacterized protein conserved in bacteria cds-NP_460955.1 CDS ROG4847 2088669 2090399 + NA 1106 amn CDS COG0775 2091304 2092758 - [F] Nucleoside phosphorylase 1107 cds-NP_448416.1 CDS NA 2092804 2092965 + NA 1108 cds-NP_460958.1 CDS NA 2092954 2093280 - NA 1109 asnW tRNA NA 2094162 2094234 - NA 1110 yeeO CDS COG0534 2094374 2095831 - [V] Na+-driven multidrug efflux pump 1111 asnU tRNA NA 2095992 2096064 + NA 1112 erfK CDS COG1376 2096293 2097222 - [S] Uncharacterized protein conserved in bacteria 1113 cobT CDS COG2038 2097300 2098370 - [H] NaMN:DMB phosphoribosyltransferase cobS CDS COG0368 2098397 2099140 - [H] Cobalamin-5-phosphate synthase cobU CDS COG2087 2099137 2099682 - [H] Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase cbiP CDS COG1492 2099679 2101199 - [H] Cobyric acid synthase cbiO CDS COG1122 2101196 2102011 - [P] ABC-type cobalt transport system, ATPase component cboQ CDS COG0619 2102020 2102697 - [P] ABC-type cobalt transport system, permease component cbiN CDS COG1930 2102684 2102965 - [P] ABC-type cobalt transport system, periplasmic component cbiM CDS COG0310 2102967 2103704 - [P] ABC-type Co2+ transport system, permease component cbiL CDS COG2243 2103701 2104414 - [H] Precorrin-2 methylase cbiK CDS COG4822 2104411 2105205 - [H] Cobalamin biosynthesis protein CbiK, Co2+ chelatase cbiJ CDS COG2099 2105208 2105999 - [H] Precorrin-6x reductase cbiH CDS COG1010 2105996 2106721 - [H] Precorrin-3B methylase cbiG CDS COG2073 2106721 2107776 - [H] Cobalamin biosynthesis protein CbiG cbiF CDS COG2875 2107757 2108530 - [H] Precorrin-4 methylase cbiT CDS COG2242 2108514 2109092 - [H] Precorrin-6B methylase 2 cbiE CDS COG2241 2109082 2109687 - [H] Precorrin-6B methylase 1 cbiD CDS COG1903 2109681 2110820 - [H] Cobalamin biosynthesis protein CbiD cbiC CDS COG2082 2110820 2111452 - [H] Precorrin isomerase cibB CDS COG1270 2111463 2112422 - [H] Cobalamin biosynthesis protein CobD/CbiB cbiA CDS COG1797 2112419 2113798 - [H] Cobyrinic acid a,c-diamide synthase 1114 pocR CDS COG4936 2114396 2115307 - [TK] Predicted sensor domain 1115 pduF CDS COG0580 2115524 2116318 - [G] Glycerol uptake facilitator and related permeases 1116 pduA CDS COG4577 2116843 2117127 + [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein pudB CDS COG4816 2117235 2117936 + [E] Ethanolamine utilization protein pduC CDS COG4909 2117955 2119619 + [Q] Propanediol dehydratase, large subunit pduD CDS ROG6636 2119630 2120304 + NA pduE CDS COG4910 2120319 2120840 + [Q] Propanediol dehydratase, small subunit pduG CDS ROG4508 2120850 2122682 + NA pduH CDS ROG6636 2122672 2123022 + NA pduJ CDS COG4577 2123041 2123316 + [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein pduK CDS COG4577 2123320 2123802 + [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein pduL CDS COG4869 2123802 2124434 + [Q] Propanediol utilization protein pduM CDS ROG4530 2124431 2124922 + NA pduN CDS COG4576 2124926 2125201 + [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein pduO CDS COG2096 2125211 2126221 + [S] Uncharacterized conserved protein pduP CDS NA 2126218 2127612 + NA pduQ CDS COG1454 2127624 2128736 + [C] Alcohol dehydrogenase, class IV pduS CDS COG4656 2128733 2130088 + [C] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC pduT CDS COG4577 2130091 2130645 + [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein pduU CDS COG4810 2130645 2130995 + [E] Ethanolamine utilization protein pduV CDS COG4917 2131000 2131452 + [E] Ethanolamine utilization protein pduW CDS COG0282 2131437 2132651 + [C] Acetate kinase pduX CDS COG4542 2132709 2133611 + [Q] Protein involved in propanediol utilization, and 1117 yeeX CDS COG2926 2133645 2133980 - [S] Uncharacterized protein conserved in bacteria 1118 yeeA CDS COG1289 2134225 2135283 - [S] Predicted membrane protein 1119 sbmC CDS COG3449 2135402 2135869 - [L] DNA gyrase inhibitor 1120 dacD CDS COG1686 2136022 2137194 - [M] D-alanyl-D-alanine carboxypeptidase 1121 phsC CDS COG4117 2137318 2138082 - [C] Thiosulfate reductase cytochrome B subunit (membrane phsB CDS COG0437 2138079 2138657 - [C] Fe-S-cluster-containing hydrogenase components 1 phsA CDS COG0243 2138672 2140948 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 1122 sopA CDS NA 2141567 2143915 + NA 1123 sbcB CDS COG2925 2144258 2145688 + [L] Exonuclease I 1124 yeeF CDS COG0531 2145824 2147188 - [E] Amino acid transporters 1125 yeeY CDS COG0583 2147468 2148382 - [K] Transcriptional regulator yeeZ CDS COG0451 2148428 2149252 - [MG] Nucleoside-diphosphate-sugar epimerases 1126 hisG CDS COG0040 2149612 2150511 + [E] ATP phosphoribosyltransferase hisD CDS COG0141 2150614 2151918 + [E] Histidinol dehydrogenase hisC CDS COG0079 2151915 2152994 + [E] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase hisB CDS COG0131 2152991 2154058 + [E] Imidazoleglycerol-phosphate dehydratase hisH CDS COG0118 2154055 2154648 + [E] Glutamine amidotransferase hisA CDS COG0106 2154648 2155385 + [E] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase hisF CDS COG0107 2155367 2156143 + [E] Imidazoleglycerol-phosphate synthase hisI CDS COG0139 2156137 2156748 + [E] Phosphoribosyl-AMP cyclohydrolase 1127 wzzB CDS COG3765 2156829 2157812 - [M] Chain length determinant protein 1128 udg CDS COG1004 2157955 2159121 - [M] Predicted UDP-glucose 6-dehydrogenase 1129 gnd CDS COG0362 2159358 2160764 - [G] 6-phosphogluconate dehydrogenase 1130 rfbP CDS COG2148 2160928 2162358 - [M] Sugar transferases involved in lipopolysaccharide synthesis rfbK CDS COG1109 2162430 2163863 - [G] Phosphomannomutase rfbM CDS COG0836 2163850 2165289 - [M] Mannose-1-phosphate guanylyltransferase rfbN CDS COG1215 2165290 2166234 - [M] Glycosyltransferases, probably involved in cell wall rfbU CDS COG0438 2166235 2167296 - [M] Glycosyltransferase rfbV CDS COG1216 2167616 2168617 - [R] Predicted glycosyltransferases rfbX CDS COG2244 2168622 2169914 - [R] Membrane protein involved in the export rfbJ CDS COG0451 2169996 2170895 - [MG] Nucleoside-diphosphate-sugar epimerases rfbH CDS COG0399 2170923 2172236 - [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved rfbG CDS COG0451 2172263 2173342 - [MG] Nucleoside-diphosphate-sugar epimerases rfbF CDS COG1208 2173347 2174120 - [MJ] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation rfbI_2 CDS COG0543 2174117 2175109 - [HC] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases rfbC CDS COG1898 2175115 2175666 - [M] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes rfbA CDS COG1209 2175667 2176545 - [M] dTDP-glucose pyrophosphorylase rfbD CDS COG1091 2176593 2177492 - [M] dTDP-4-dehydrorhamnose reductase rfbB CDS COG1088 2177492 2178577 - [M] dTDP-D-glucose 4,6-dehydratase galF CDS COG1210 2178954 2179847 - [M] UDP-glucose pyrophosphorylase 1131 wcaM CDS NA 2180025 2181428 - NA wcaL CDS COG0438 2181439 2182659 - [M] Glycosyltransferase wcaK CDS COG2327 2182656 2183936 - [S] Uncharacterized conserved protein wzxC CDS COG2244 2183958 2185436 - [R] Membrane protein involved in the export wcaJ CDS COG2148 2185569 2186963 - [M] Sugar transferases involved in lipopolysaccharide synthesis cpsG CDS COG1109 2187017 2188387 - [G] Phosphomannomutase manC CDS COG0836 2188498 2189940 - [M] Mannose-1-phosphate guanylyltransferase wcaI CDS COG0438 2189937 2191160 - [M] Glycosyltransferase wcaH CDS COG1051 2191157 2191630 - [F] ADP-ribose pyrophosphatase wcaG CDS COG0451 2191633 2192598 - [MG] Nucleoside-diphosphate-sugar epimerases gmd CDS COG1089 2192601 2193722 - [M] GDP-D-mannose dehydratase wcaF CDS COG0110 2193746 2194300 - [R] Acetyltransferase (isoleucine patch superfamily) wcaE CDS COG1216 2194316 2195062 - [R] Predicted glycosyltransferases wcaD CDS NA 2195075 2196289 - NA wcaC CDS COG0438 2196264 2197481 - [M] Glycosyltransferase wcaB CDS COG1045 2197478 2197966 - [E] Serine acetyltransferase wcaA CDS COG0463 2197969 2198811 - [M] Glycosyltransferases involved in cell wall biogenesis wzc CDS COG3206 2198898 2201057 - [M] Uncharacterized protein involved in exopolysaccharide biosynthesis wzb CDS COG0394 2201054 2201503 - [T] Protein-tyrosine-phosphatase wza CDS COG1596 2201509 2202648 - [M] Periplasmic protein involved in polysaccharide export 1132 yegH CDS COG0861 2203323 2204903 + [P] Membrane protein TerC, possibly involved in 1133 asmA CDS COG2982 2204989 2206845 - [M] Uncharacterized protein involved in outer membrane dcd CDS COG0717 2206884 2207465 - [F] Deoxycytidine deaminase udk CDS COG0572 2207556 2208197 - [F] Uridine kinase 1134 yegE CDS COG3447 2208528 2211518 + [T] Predicted integral membrane sensor domain 1135 alkA CDS COG0122 2211486 2212355 - [L] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 1136 yegD CDS ROG0810 2212489 2213841 + NA 1137 cds-NP_461071.1 CDS COG0845 2214282 2215523 + [M] Membrane-fusion protein yegN CDS COG0841 2215523 2218645 + [V] Cation/multidrug efflux pump yegO CDS COG0841 2218646 2221726 + [V] Cation/multidrug efflux pump yegB CDS COG0477 2221723 2223135 + [GEPR] Permeases of the major facilitator superfamily baeS CDS COG0642 2223135 2224538 + [T] Signal transduction histidine kinase baeR CDS COG0745 2224535 2225257 + [TK] Response regulators consisting of a CheY-like 1138 cds-NP_461077.1 CDS NA 2225844 2226728 + NA cds-NP_461078.1 CDS ROG2994 2226728 2227444 + NA cds-NP_461079.1 CDS NA 2227455 2229566 + NA 1139 yegQ CDS COG0826 2229682 2231043 + [O] Collagenase and related proteases 1140 cds-NP_461081.1 CDS NA 2231494 2232540 + NA 1141 cds-NP_461082.1 CDS ROG4026 2232576 2232992 - NA 1142 cds-NP_461083.1 CDS NA 2233114 2233449 - NA 1143 yegS CDS COG1597 2234011 2234910 + [IR] Sphingosine kinase and enzymes related to 1144 fbaB CDS COG1830 2234963 2236015 - [G] DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 1145 yegT CDS NA 2236269 2237540 + NA yegU CDS COG1397 2237537 2238541 + [O] ADP-ribosylglycohydrolase yegV CDS COG0524 2238538 2239503 + [G] Sugar kinases, ribokinase family 1146 yegW CDS COG2188 2239477 2240223 - [K] Transcriptional regulators thiD CDS COG0351 2240259 2241059 - [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase thiM CDS COG2145 2241046 2241843 - [H] Hydroxyethylthiazole kinase, sugar kinase family 1147 cds-NP_461092.1 CDS COG5455 2242253 2242567 + [S] Predicted integral membrane protein 1148 stcD CDS NA 2242830 2243837 - NA stcC CDS COG3188 2243853 2246342 - [NU] P pilus assembly protein, porin PapC stcB CDS COG3121 2246356 2247039 - [NU] P pilus assembly protein, chaperone PapD stcA CDS COG3539 2247095 2247625 - [NU] P pilus assembly protein, pilin FimA yehE CDS COG3539 2247904 2248185 - [NU] P pilus assembly protein, pilin FimA 1149 mrp CDS COG0489 2248463 2249572 - [D] ATPases involved in chromosome partitioning 1150 metG CDS COG0143 2249737 2251770 + [J] Methionyl-tRNA synthetase 1151 yehR CDS COG4808 2252011 2252469 + [S] Uncharacterized protein conserved in bacteria cds-NP_461101.1 CDS COG4808 2252641 2253171 + [S] Uncharacterized protein conserved in bacteria 1152 yehS CDS COG4807 2253228 2253695 - [S] Uncharacterized protein conserved in bacteria yehT CDS COG3279 2253742 2254461 - [KT] Response regulator of the LytR/AlgR family yehU CDS COG3275 2254458 2256143 - [T] Putative regulator of cell autolysis 1153 yehV CDS COG2452 2256366 2257097 + [L] Predicted site-specific integrase-resolvase cds-NP_461106.1 CDS NA 2257157 2257264 + NA 1154 yehW CDS COG1174 2257245 2257976 - [E] ABC-type proline/glycine betaine transport systems, permease yehX CDS COG1125 2257960 2258907 - [E] ABC-type proline/glycine betaine transport systems, ATPase yehY CDS COG1174 2258900 2260069 - [E] ABC-type proline/glycine betaine transport systems, permease yehZ CDS COG1732 2260073 2260990 - [M] Periplasmic glycine betaine/choline-binding (lipo)protein of an 1155 bglX CDS COG1472 2261171 2263468 - [G] Beta-glucosidase-related glycosidases 1156 dld CDS COG0277 2263735 2265465 + [C] FAD/FMN-containing dehydrogenases 1157 pbpG CDS COG1686 2265523 2266470 - [M] D-alanyl-D-alanine carboxypeptidase 1158 yohC CDS ROG0339 2266636 2267223 - NA 1159 yohD CDS COG0586 2267355 2267951 + [S] Uncharacterized membrane-associated protein 1160 yohF CDS COG1028 2268000 2268761 - [IQR] Dehydrogenases with different specificities (related to yohG CDS COG1538 2268827 2270263 - [MU] Outer membrane protein 1161 cds-NP_448577.2 CDS NA 2270581 2270664 + NA 1162 yohI CDS COG0042 2270722 2271660 - [J] tRNA-dihydrouridine synthase 1163 cds-NP_461120.1 CDS COG0654 2271769 2272962 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases cds-NP_461121.1 CDS COG0625 2272977 2273621 - [O] Glutathione S-transferase cds-NP_461122.1 CDS COG0179 2273630 2274331 - [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) cds-NP_461123.1 CDS COG3435 2274347 2275384 - [Q] Gentisate 1,2-dioxygenase cds-NP_461124.1 CDS ROG6218 2275396 2276754 - NA 1164 cds-NP_461125.1 CDS COG0583 2276880 2277788 + [K] Transcriptional regulator 1165 yohJ CDS COG1380 2277920 2278318 + [R] Putative effector of murein hydrolase LrgA yohK CDS COG1346 2278315 2279010 + [M] Putative effector of murein hydrolase 1166 cdd CDS COG0295 2279164 2280048 + [F] Cytidine deaminase 1167 sanA CDS COG2949 2280225 2280944 + [S] Uncharacterized membrane protein b2145 CDS NA 2280941 2281186 + NA 1168 cds-NP_461131.1 CDS COG0493 2281391 2282632 + [ER] NADPH-dependent glutamate synthase beta chain and yeiA CDS COG0167 2282626 2283861 + [F] Dihydroorotate dehydrogenase 1169 mglC CDS COG4211 2283936 2284946 - [G] ABC-type glucose/galactose transport system, permease component mglA CDS COG1129 2284962 2286482 - [G] ABC-type sugar transport system, ATPase component mglB CDS COG1879 2286616 2287614 - [G] ABC-type sugar transport system, periplasmic component 1170 galS CDS COG1609 2288113 2289135 - [K] Transcriptional regulators 1171 yeiB CDS COG2311 2289285 2290427 - [S] Predicted membrane protein folE CDS COG0302 2290442 2291110 - [H] GTP cyclohydrolase I 1172 yeiG CDS COG0627 2291440 2292297 + [R] Predicted esterase 1173 cds-NP_461140.1 CDS ROG1061 2292286 2292675 - NA cds-NP_461141.1 CDS COG1760 2292680 2294047 - [E] L-serine deaminase 1174 cds-NP_461142.1 CDS COG0560 2294264 2295151 + [E] Phosphoserine phosphatase cds-NP_461143.1 CDS COG2271 2295184 2296506 + [G] Sugar phosphate permease 1175 cirA CDS COG4771 2296550 2298541 - [P] Outer membrane receptor for ferrienterochelin and 1176 lysP CDS COG0833 2298887 2300356 - [E] Amino acid transporters 1177 yeiE CDS COG0583 2300546 2301409 - [K] Transcriptional regulator 1178 yeiH CDS COG2855 2301530 2302579 + [S] Predicted membrane protein 1179 nfo CDS COG0648 2302658 2303515 + [L] Endonuclease IV 1180 fruA CDS COG1299 2303580 2305268 - [G] Phosphotransferase system, fructose-specific IIC component fruK CDS COG1105 2305285 2306223 - [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase fruF CDS COG4668 2306223 2307353 - [G] Mannitol/fructose-specific phosphotransferase system, IIA domain 1181 setB CDS NA 2307722 2308903 + NA 1182 cds-NP_461153.1 CDS NA 2308968 2309633 - NA cds-NP_461154.1 CDS COG2246 2309635 2309757 - [S] Predicted membrane protein 1183 yeiP CDS COG0231 2310492 2311295 + [J] Translation elongation factor P (EF-P)/translation initiation 1184 yeiR CDS COG0523 2311508 2312494 + [R] Putative GTPases (G3E family) yeiU CDS ROG3410 2312524 2313243 + NA 1185 spr CDS COG0791 2313657 2314229 + [M] Cell wall-associated hydrolases (invasion-associated proteins) 1186 rtn CDS COG2200 2314555 2316111 + [T] FOG: EAL domain 1187 yejA CDS COG0747 2316218 2318023 + [E] ABC-type dipeptide transport system, periplasmic component yejB CDS COG4174 2318033 2319127 + [R] ABC-type uncharacterized transport system, permease component yejE CDS COG4239 2319127 2320152 + [R] ABC-type uncharacterized transport system, permease component yejF CDS COG4172 2320154 2321743 + [R] ABC-type uncharacterized transport system, duplicated ATPase 1188 yejG CDS NA 2321747 2322091 - NA 1189 bcr CDS COG2814 2322482 2323672 - [G] Arabinose efflux permease rsuA CDS COG1187 2323700 2324395 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 1190 yejH CDS COG1061 2324547 2326307 + [KL] DNA or RNA helicases of superfamily 1191 rplY CDS COG1825 2326432 2326716 + [J] Ribosomal protein L25 (general stress protein 1192 cds-NP_461169.1 CDS NA 2326825 2327445 - NA yejK CDS COG3081 2327473 2328480 - [R] Nucleoid-associated protein 1193 yejL CDS COG3082 2328660 2328887 + [S] Uncharacterized protein conserved in bacteria yejM CDS COG3083 2328919 2330679 + [R] Predicted hydrolase of alkaline phosphatase superfamily 1194 rna-STM2229 tRNA NA 2330748 2330821 + NA 1195 cds-NP_461173.3 CDS COG1974 2330960 2331463 - [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 1196 cds-NP_461174.1 CDS NA 2331491 2331781 + NA 1197 oafA CDS COG1835 2332129 2333958 + [I] Predicted acyltransferases 1198 cds-NP_461176.1 CDS ROG5293 2334012 2334455 - NA 1199 cds-NP_461177.1 CDS NA 2334833 2335360 - NA cds-NP_461178.1 CDS NA 2335363 2336604 - NA cds-NP_461179.1 CDS COG3740 2336665 2337183 - [R] Phage head maturation protease cds-NP_461180.1 CDS COG4695 2337197 2337526 - [S] Phage-related protein 1200 cds-NP_461181.1 CDS COG4928 2337823 2339154 + [R] Predicted P-loop ATPase 1201 cds-NP_461182.1 CDS NA 2339183 2339551 - NA cds-NP_461183.1 CDS ROG3846 2339566 2340555 - NA 1202 sspH2 CDS COG4886 2340884 2343250 - [S] Leucine-rich repeat (LRR) protein 1203 cds-NP_461185.1 CDS NA 2343419 2343622 - NA 1204 cds-NP_461186.1 CDS COG5301 2343919 2344710 - [R] Phage-related tail fibre protein 1205 cds-NP_461187.1 CDS NA 2345013 2345216 + NA 1206 cds-NP_461188.1 CDS ROG0756 2345408 2345971 - NA 1207 narP CDS COG2197 2346701 2347348 + [TK] Response regulator containing a CheY-like receiver 1208 ccmH CDS COG3088 2347392 2348435 - [O] Uncharacterized protein involved in biosynthesis of ccmG CDS COG0526 2348432 2348989 - [OC] Thiol-disulfide isomerase and thioredoxins ccmF CDS COG1138 2348986 2350917 - [O] Cytochrome c biogenesis factor ccmE CDS COG2332 2350914 2351393 - [O] Cytochrome c-type biogenesis protein CcmE ccmD CDS COG3114 2351390 2351602 - [U] Heme exporter protein D ccmC CDS COG0755 2351599 2352336 - [O] ABC-type transport system involved in cytochrome ccmB CDS COG2386 2352388 2353047 - [O] ABC-type transport system involved in cytochrome ccmA CDS COG4133 2353044 2353661 - [O] ABC-type transport system involved in cytochrome napC CDS COG3005 2353682 2354284 - [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c napB CDS COG3043 2354294 2354743 - [C] Nitrate reductase cytochrome c-type subunit napH CDS COG0348 2354859 2355728 - [C] Polyferredoxin napG CDS COG1145 2355715 2356410 - [C] Ferredoxin napA CDS COG0243 2356417 2358903 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing napD CDS COG3062 2358900 2359163 - [P] Uncharacterized protein involved in formation of napF CDS COG1145 2359153 2359644 - [C] Ferredoxin 1209 eco CDS COG4574 2360058 2360552 + [R] Serine protease inhibitor ecotin 1210 yojI CDS COG4615 2360761 2362404 - [QP] ABC-type siderophore export system, fused ATPase alkB CDS COG3145 2362480 2363130 - [L] Alkylated DNA repair protein ada CDS COG2169 2363133 2364194 - [F] Adenosine deaminase 1211 apbE CDS COG1477 2364275 2365327 - [H] Membrane-associated lipoprotein involved in thiamine biosynthesis 1212 ompC CDS COG3203 2365442 2366578 - [M] Outer membrane protein (porin) 1213 yojN CDS COG2198 2367307 2369976 + [T] FOG: HPt domain rcsB CDS COG2197 2369993 2370643 + [TK] Response regulator containing a CheY-like receiver 1214 rcsC CDS COG0642 2370746 2373592 - [T] Signal transduction histidine kinase gyrA CDS COG0188 2373710 2376346 - [L] Type IIA topoisomerase (DNA gyrase/topo II, 1215 cds-NP_461215.1 CDS COG4948 2376756 2377958 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of cds-NP_461216.1 CDS COG2271 2377973 2379298 - [G] Sugar phosphate permease 1216 cds-NP_461217.3 CDS COG1802 2379348 2380232 + [K] Transcriptional regulators 1217 ubiG CDS COG2227 2380315 2381043 + [H] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 1218 nrdA CDS COG0209 2381399 2383684 + [F] Ribonucleotide reductase, alpha subunit nrdB CDS COG0208 2383797 2384927 + [F] Ribonucleotide reductase, beta subunit yfaE CDS COG0633 2384927 2385181 + [C] Ferredoxin 1219 cds-NP_461222.1 CDS COG2814 2385183 2386373 - [G] Arabinose efflux permease 1220 cds-NP_461223.1 CDS COG0583 2386535 2387413 + [K] Transcriptional regulator 1221 glpQ CDS COG0584 2387529 2388599 - [C] Glycerophosphoryl diester phosphodiesterase glpT CDS COG2271 2388604 2389962 - [G] Sugar phosphate permease 1222 glpA CDS COG0578 2390235 2391863 + [C] Glycerol-3-phosphate dehydrogenase glpB CDS COG3075 2391853 2393112 + [E] Anaerobic glycerol-3-phosphate dehydrogenase glpC CDS COG0247 2393109 2394299 + [C] Fe-S oxidoreductase 1223 cds-NP_461229.3 CDS NA 2394794 2395747 + NA 1224 cds-NP_461230.1 CDS NA 2395857 2396033 - NA cds-NP_461231.1 CDS COG3836 2396039 2396842 - [G] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase yfaV CDS COG3247 2396868 2398157 - [S] Uncharacterized conserved protein yfaW CDS COG4948 2398213 2399430 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of yfaX CDS COG1414 2399432 2400214 - [K] Transcriptional regulator 1225 cds-NP_461235.1 CDS COG1058 2400464 2401660 - [R] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis 1226 yfaZ CDS ROG1990 2401775 2402422 - NA 1227 yfaO CDS COG1051 2402596 2403021 + [F] ADP-ribose pyrophosphatase 1228 ais CDS ROG3466 2403066 2403671 - NA 1229 yfbE CDS COG0399 2403952 2405109 + [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved pmrF CDS COG0463 2405112 2406095 + [M] Glycosyltransferases involved in cell wall biogenesis yfbG CDS COG0223 2406092 2408074 + [J] Methionyl-tRNA formyltransferase cds-NP_461242.1 CDS ROG1434 2408071 2408970 + NA pqaB CDS COG1807 2408967 2410613 + [M] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of cds-NP_461244.1 CDS COG0697 2410610 2410945 + [GER] Permeases of the drug/metabolite transporter (DMT) cds-NP_461245.1 CDS ROG3564 2410945 2411322 + NA 1230 pmrD CDS NA 2411317 2411574 - NA 1231 menE CDS COG0318 2411672 2413039 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II menC CDS COG1441 2413036 2413998 - [H] O-succinylbenzoate synthase menB CDS COG0447 2413998 2414855 - [H] Dihydroxynaphthoic acid synthase yfbB CDS COG0596 2414870 2415628 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase menD CDS COG1165 2415625 2417295 - [H] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase menF CDS COG1169 2417381 2418676 - [HQ] Isochorismate synthase 1232 elaB CDS COG4575 2418777 2419088 - [S] Uncharacterized conserved protein elaA CDS COG2153 2419137 2419598 - [R] Predicted acyltransferase 1233 elaC CDS COG1234 2419659 2420576 + [R] Metal-dependent hydrolases of the beta-lactamase superfamily cds-NP_461256.1 CDS COG0835 2420642 2421643 + [NT] Chemotaxis signal transduction protein 1234 yfbK CDS COG2304 2421684 2423465 - [R] Uncharacterized protein containing a von Willebrand 1235 nuoN CDS COG1007 2424353 2425630 - [C] NADH:ubiquinone oxidoreductase subunit 2 (chain N) nuoM CDS COG1008 2425817 2427346 - [C] NADH:ubiquinone oxidoreductase subunit 4 (chain M) nuoL CDS COG1009 2427660 2429501 - [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit nuoK CDS COG0713 2429498 2429800 - [C] NADH:ubiquinone oxidoreductase subunit 11 or 4L nuoJ CDS COG0839 2429797 2430351 - [C] NADH:ubiquinone oxidoreductase subunit 6 (chain J) nuoI CDS COG1143 2430362 2430904 - [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 nuoH CDS COG1005 2430919 2431896 - [C] NADH:ubiquinone oxidoreductase subunit 1 (chain H) nuoG CDS COG1034 2431893 2434625 - [C] NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit nuoF CDS COG1894 2434650 2435987 - [C] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit nuoE CDS COG1905 2435984 2436484 - [C] NADH:ubiquinone oxidoreductase 24 kD subunit nuoC CDS COG0649 2436487 2438289 - [C] NADH:ubiquinone oxidoreductase 49 kD subunit 7 nuoB CDS COG0377 2438376 2439038 - [C] NADH:ubiquinone oxidoreductase 20 kD subunit and nuoA CDS COG0838 2439054 2439497 - [C] NADH:ubiquinone oxidoreductase subunit 3 (chain A) 1236 cds-NP_461271.1 CDS NA 2439892 2440044 - NA 1237 lrhA CDS COG0583 2440124 2441062 - [K] Transcriptional regulator 1238 yfbQ CDS COG0436 2441994 2443208 + [E] Aspartate/tyrosine/aromatic aminotransferase cds-NP_461274.1 CDS COG1896 2443302 2443901 + [R] Predicted hydrolases of HD superfamily 1239 yfbS CDS COG0471 2443993 2445819 - [P] Di- and tricarboxylate transporters 1240 yfbT CDS COG0637 2445896 2446573 - [R] Predicted phosphatase/phosphohexomutase yfbU CDS COG3013 2446566 2447060 - [S] Uncharacterized conserved protein cds-NP_461278.1 CDS COG3092 2447143 2447598 - [S] Uncharacterized protein conserved in bacteria 1241 ackA CDS COG0282 2447938 2449140 + [C] Acetate kinase pta CDS COG0280 2449217 2451361 + [C] Phosphotransacetylase 1242 yfcC CDS COG1288 2451579 2453099 + [S] Predicted membrane protein 1243 cds-NP_461282.1 CDS COG3958 2453148 2454101 - [G] Transketolase, C-terminal subunit cds-NP_461283.1 CDS COG3959 2454094 2454924 - [G] Transketolase, N-terminal subunit cds-NP_461284.3 CDS COG3037 2454921 2456312 - [S] Uncharacterized protein conserved in bacteria cds-NP_461285.1 CDS COG3414 2456333 2456605 - [G] Phosphotransferase system, galactitol-specific IIB component cds-NP_461286.1 CDS COG1762 2456686 2457129 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 1244 cds-NP_461287.1 CDS COG1609 2457382 2458401 + [K] Transcriptional regulators 1245 cds-NP_461288.1 CDS COG0494 2458407 2458961 - [LR] NTP pyrophosphohydrolases including oxidative damage repair yfcE CDS COG0622 2459018 2459569 - [R] Predicted phosphoesterase 1246 yfcF CDS COG0625 2459625 2460269 - [O] Glutathione S-transferase 1247 yfcG CDS COG0625 2460412 2461059 + [O] Glutathione S-transferase 1248 yfcH CDS COG1090 2461185 2462078 + [R] Predicted nucleoside-diphosphate sugar epimerase 1249 hisP CDS COG4598 2462130 2462906 - [E] ABC-type histidine transport system, ATPase component hisM CDS COG4160 2462917 2463624 - [E] ABC-type arginine/histidine transport system, permease component hisQ CDS COG4215 2463621 2464307 - [E] ABC-type arginine transport system, permease component hisJ CDS COG0834 2464490 2465272 - [ET] ABC-type amino acid transport/signal transduction systems, argT CDS COG0834 2465510 2466292 - [ET] ABC-type amino acid transport/signal transduction systems, 1250 ubiX CDS COG0163 2466581 2467150 - [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase cds-NP_461299.1 CDS COG1113 2467177 2468583 - [E] Gamma-aminobutyrate permease and related permeases cds-NP_461300.1 CDS COG3457 2468647 2469750 - [E] Predicted amino acid racemase cds-NP_461301.1 CDS COG0531 2469752 2471173 - [E] Amino acid transporters cds-NP_461302.1 CDS COG0019 2471264 2472661 - [E] Diaminopimelate decarboxylase 1251 cds-NP_461303.1 CDS COG3829 2472872 2474299 + [KT] Transcriptional regulator containing PAS, AAA-type ATPase, 1252 purF CDS COG0034 2474335 2475852 - [F] Glutamine phosphoribosylpyrophosphate amidotransferase cvpA CDS COG1286 2475890 2476378 - [R] Uncharacterized membrane protein, required for colicin 1253 dedD CDS COG3147 2476689 2477363 - [S] Uncharacterized protein conserved in bacteria folC CDS COG0285 2477353 2478621 - [H] Folylpolyglutamate synthase accD CDS COG0777 2478689 2479603 - [I] Acetyl-CoA carboxylase beta subunit 1254 dedA CDS COG0586 2479753 2480412 - [S] Uncharacterized membrane-associated protein truA CDS COG0101 2480461 2481273 - [J] Pseudouridylate synthase usg CDS COG0136 2481273 2482286 - [E] Aspartate-semialdehyde dehydrogenase pdxB CDS COG0111 2482354 2483490 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1255 flk CDS NA 2483594 2484595 + NA 1256 cds-NP_461314.1 CDS NA 2484592 2485770 - NA 1257 cds-NP_461315.1 CDS COG3678 2485950 2486324 - [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 1258 cds-NP_461316.1 CDS COG3423 2486497 2486745 + [K] Predicted transcriptional regulator 1259 cds-NP_461317.1 CDS NA 2486914 2487282 + NA cds-NP_461318.1 CDS NA 2487282 2487800 + NA 1260 cds-NP_461319.1 CDS COG1266 2487867 2488523 - [R] Predicted metal-dependent membrane protease 1261 fabB CDS COG0304 2488621 2489835 - [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase 1262 cds-NP_461321.3 CDS COG4121 2489935 2491995 + [S] Uncharacterized conserved protein 1263 yfcL CDS ROG4992 2492047 2492322 - NA yfcM CDS COG3101 2492355 2492903 - [S] Uncharacterized protein conserved in bacteria yfcA CDS COG0730 2492903 2493712 - [R] Predicted permeases mepA CDS COG3770 2493712 2494536 - [M] Murein endopeptidase aroC CDS COG0082 2494540 2495625 - [E] Chorismate synthase yfcB CDS COG2890 2495661 2496593 - [J] Methylase of polypeptide chain release factors 1264 yfcN CDS COG2840 2496759 2497310 + [S] Uncharacterized protein conserved in bacteria 1265 sixA CDS COG2062 2497410 2497895 - [T] Phosphohistidine phosphatase SixA 1266 yfcX CDS COG1250 2498104 2500251 - [I] 3-hydroxyacyl-CoA dehydrogenase yfcY CDS COG0183 2500251 2501561 - [I] Acetyl-CoA acetyltransferase 1267 yfcZ CDS COG3691 2501739 2502023 - [S] Uncharacterized protein conserved in bacteria 1268 fadL CDS COG2067 2502388 2503701 + [I] Long-chain fatty acid transport protein 1269 vacJ CDS COG2853 2503762 2504517 - [M] Surface lipoprotein 1270 yfdC CDS COG2116 2504806 2505747 + [P] Formate/nitrite family of transporters 1271 argW tRNA NA 2505821 2505892 + NA 1272 pgtE CDS COG4571 2506054 2506992 - [M] Outer membrane protease 1273 pgtA CDS COG2204 2507260 2508507 - [T] Response regulator containing CheY-like receiver, AAA-type pgtB CDS COG4192 2508497 2510503 - [T] Signal transduction histidine kinase regulating phosphoglycerate pgtC CDS COG1840 2510500 2511693 - [P] ABC-type Fe3+ transport system, periplasmic component 1274 pgtP CDS COG2271 2512129 2513520 + [G] Sugar phosphate permease 1275 cds-NP_461341.1 CDS ROG6325 2513796 2514038 - NA 1276 ddg CDS COG1560 2514560 2515480 + [M] Lauroyl/myristoyl acyltransferase 1277 yfdZ CDS COG0436 2516004 2517242 - [E] Aspartate/tyrosine/aromatic aminotransferase 1278 glk CDS COG0837 2517963 2518928 - [G] Glucokinase 1279 cds-NP_461345.1 CDS ROG4630 2519132 2520367 + NA 1280 cds-NP_461346.1 CDS COG3961 2520387 2522039 - [GHR] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring 1281 cds-NP_461347.1 CDS COG0667 2522219 2523217 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1282 ypeC CDS ROG0756 2523331 2523657 + NA 1283 mntH CDS COG1914 2523718 2524959 - [P] Mn2+ and Fe2+ transporters of the 1284 nupC CDS COG1972 2525302 2526504 + [F] Nucleoside permease 1285 yfeA CDS COG2200 2526557 2528746 - [T] FOG: EAL domain 1286 alaX tRNA NA 2528938 2529010 - NA alaW tRNA NA 2529056 2529128 - NA 1287 yfeC CDS ROG3866 2529352 2529714 + NA yfeD CDS COG1476 2529716 2530108 + [K] Predicted transcriptional regulators 1288 gltX CDS COG0008 2530162 2531577 - [J] Glutamyl- and glutaminyl-tRNA synthetases 1289 valU tRNA NA 2531834 2531906 + NA valX tRNA NA 2531955 2532027 + NA valY tRNA NA 2532072 2532144 + NA lysV tRNA NA 2532152 2532224 + NA 1290 xapR CDS COG0583 2532393 2533277 - [K] Transcriptional regulator 1291 xapB CDS NA 2533546 2534802 - NA xapA CDS COG0005 2534857 2535690 - [F] Purine nucleoside phosphorylase 1292 yfeN CDS ROG0103 2535946 2536707 + NA 1293 yfeR CDS COG0583 2536769 2537695 - [K] Transcriptional regulator 1294 yfeH CDS COG0385 2537785 2538783 + [R] Predicted Na+-dependent transporter 1295 cds-NP_461361.3 CDS COG3530 2538780 2539007 - [S] Uncharacterized protein conserved in bacteria lig CDS COG0272 2539000 2541015 - [L] NAD-dependent DNA ligase (contains BRCT domain zipA CDS COG3115 2541087 2542073 - [D] Cell division protein 1296 cysZ CDS COG2981 2542305 2543066 + [E] Uncharacterized protein involved in cysteine biosynthesis 1297 cysK CDS COG0031 2543230 2544201 + [E] Cysteine synthase 1298 ptsH CDS COG1925 2544585 2544842 + [G] Phosphotransferase system, HPr-related proteins ptsI CDS COG1080 2544891 2546618 + [G] Phosphoenolpyruvate-protein kinase (PTS system EI component crr CDS COG2190 2546659 2547168 + [G] Phosphotransferase system IIA components 1299 cds-NP_461369.1 CDS NA 2547317 2547556 - NA pdxK CDS COG2240 2547553 2548419 - [H] Pyridoxal/pyridoxine/pyridoxamine kinase 1300 ptsJ CDS COG1167 2548502 2549794 + [KE] Transcriptional regulators containing a DNA-binding HTH yfeJ CDS COG0512 2549809 2550528 + [EH] Anthranilate/para-aminobenzoate synthases component II yfeK CDS NA 2550587 2550967 + NA yfeL CDS NA 2550980 2551519 + NA 1301 cysM CDS COG0031 2551650 2552561 - [E] Cysteine synthase cysA CDS COG1118 2552629 2553726 - [P] ABC-type sulfate/molybdate transport systems, ATPase component cysW CDS COG4208 2553716 2554591 - [P] ABC-type sulfate transport system, permease component cysU CDS COG0555 2554591 2555424 - [O] ABC-type sulfate transport system, permease component cysP CDS COG4150 2555424 2556440 - [P] ABC-type sulfate transport system, periplasmic component 1302 ucpA CDS COG1028 2556598 2557389 - [IQR] Dehydrogenases with different specificities (related to 1303 cds-NP_461381.1 CDS COG2837 2557627 2558526 - [P] Predicted iron-dependent peroxidase 1304 cds-NP_461382.1 CDS NA 2558621 2559196 - NA yfeZ CDS ROG4313 2559258 2559707 - NA cds-NP_461384.3 CDS COG0454 2559694 2560230 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1305 amiA CDS COG0860 2560332 2561201 + [M] N-acetylmuramoyl-L-alanine amidase hemF CDS COG0408 2561204 2562103 + [H] Coproporphyrinogen III oxidase cds-NP_461387.1 CDS NA 2562124 2562453 + NA 1306 cds-NP_461388.1 CDS ROG5235 2562582 2563859 + NA 1307 eutR CDS COG2207 2564059 2565111 - [K] AraC-type DNA-binding domain-containing proteins eutK CDS COG4577 2565159 2565653 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein eutL CDS COG4816 2565666 2566325 - [E] Ethanolamine utilization protein eutC CDS COG4302 2566335 2567231 - [E] Ethanolamine ammonia-lyase, small subunit eutB CDS COG4303 2567250 2568611 - [E] Ethanolamine ammonia-lyase, large subunit eutA CDS COG4819 2568623 2570026 - [E] Ethanolamine utilization protein, possible chaperonin protecting eutH CDS COG3192 2570023 2571249 - [E] Ethanolamine utilization protein eutG CDS COG1454 2571369 2572556 - [C] Alcohol dehydrogenase, class IV eutJ CDS COG4820 2572546 2573385 - [E] Ethanolamine utilization protein, possible chaperonin eutE CDS NA 2573396 2574799 - NA eutN CDS COG4576 2574811 2575110 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein eutM CDS COG4577 2575211 2575501 - [QC] Carbon dioxide concentrating mechanism/carboxysome shell protein eutD CDS COG0280 2575542 2576558 - [C] Phosphotransacetylase eutT CDS COG4812 2576555 2577358 - [E] Ethanolamine utilization cobalamin adenosyltransferase eutQ CDS COG4766 2577355 2578044 - [E] Ethanolamine utilization protein eutP CDS COG4917 2578022 2578501 - [E] Ethanolamine utilization protein eutS CDS COG4810 2578514 2578849 - [E] Ethanolamine utilization protein 1308 tnpA_3 CDS COG1943 2579330 2579788 - [L] Transposase and inactivated derivatives 1309 maeB CDS COG0281 2579978 2582257 - [C] Malic enzyme 1310 talA CDS COG0176 2582529 2583479 + [G] Transaldolase tktB CDS COG0021 2583499 2585499 + [G] Transketolase 1311 cds-NP_461410.1 CDS NA 2585562 2585792 - NA 1312 ypfG CDS ROG3302 2585920 2586963 - NA 1313 yffH CDS COG0494 2587088 2587663 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1314 cds-NP_461413.1 CDS COG1680 2587867 2589165 + [V] Beta-lactamase class C and other penicillin 1315 aegA CDS COG0493 2589614 2591575 - [ER] NADPH-dependent glutamate synthase beta chain and 1316 narQ CDS COG3850 2591761 2593461 + [T] Signal transduction histidine kinase, nitrate/nitrite-specific 1317 acrD CDS COG0841 2593646 2596759 + [V] Cation/multidrug efflux pump 1318 yffB CDS COG1393 2597333 2597689 + [P] Arsenate reductase and related proteins, glutaredoxin dapE CDS COG0624 2597693 2598820 + [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases cds-NP_461419.1 CDS NA 2598848 2599048 + NA 1319 ypfI CDS COG1444 2599075 2601093 - [R] Predicted P-loop ATPase fused to an cds-NP_461421.1 CDS COG2321 2601109 2601972 - [R] Predicted metalloprotease 1320 purC CDS COG0152 2602103 2602816 - [F] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 1321 nlpB CDS COG3317 2602991 2604025 - [M] Uncharacterized lipoprotein dapA CDS COG0329 2604042 2604920 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 1322 gcvR CDS COG2716 2605000 2605638 + [E] Glycine cleavage system regulatory protein bcp CDS COG1225 2605638 2606108 + [O] Peroxiredoxin 1323 cds-NP_461427.1 CDS COG1929 2606155 2606508 - [G] Glycerate kinase 1324 perM CDS COG0628 2606695 2607762 - [R] Predicted permease 1325 cds-NP_461429.1 CDS COG4783 2607970 2609433 + [R] Putative Zn-dependent protease, contains TPR repeats yfgD CDS COG1393 2609473 2609832 + [P] Arsenate reductase and related proteins, glutaredoxin 1326 yfgE CDS NA 2609859 2610584 - NA 1327 uraA CDS COG2233 2610655 2611944 - [F] Xanthine/uracil permeases upp CDS COG0035 2612032 2612658 - [F] Uracil phosphoribosyltransferase 1328 purM CDS COG0150 2613072 2614109 + [F] Phosphoribosylaminoimidazole (AIR) synthetase purN CDS COG0299 2614109 2614747 + [F] Folate-dependent phosphoribosylglycinamide formyltransferase PurN 1329 ppk CDS COG0855 2614936 2617002 + [P] Polyphosphate kinase ppx CDS COG0248 2617007 2618548 + [FP] Exopolyphosphatase 1330 cds-NP_461438.1 CDS COG2200 2618584 2620797 - [T] FOG: EAL domain 1331 cds-NP_448898.1 CDS NA 2620894 2621031 - NA 1332 cds-NP_461440.1 CDS NA 2621102 2621362 - NA 1333 cds-NP_461441.1 CDS NA 2621210 2621401 + NA 1334 cds-NP_448901.1 CDS NA 2621480 2621716 - NA 1335 cds-NP_461443.1 CDS NA 2621942 2622271 + NA 1336 cds-NP_461444.1 CDS COG2801 2622291 2622647 - [L] Transposase and inactivated derivatives 1337 guaA CDS COG0519 2622804 2624381 - [F] GMP synthase, PP-ATPase domain/subunit guaB CDS COG0516 2624451 2625917 - [F] IMP dehydrogenase/GMP reductase 1338 xseA CDS COG1570 2626078 2627427 + [L] Exonuclease VII, large subunit 1339 shdA CDS COG3468 2627589 2633708 - [MU] Type V secretory pathway, adhesin AidA 1340 ratB CDS ROG0883 2634402 2641709 - NA 1341 ratA CDS NA 2641875 2647472 - NA 1342 sinI CDS ROG2426 2647592 2648551 - NA sinH CDS ROG3089 2648609 2650801 - NA 1343 yfgJ CDS NA 2651147 2651368 - NA 1344 engA CDS COG1160 2651457 2652929 - [R] Predicted GTPases yfgL CDS COG1520 2653048 2654226 - [S] FOG: WD40-like repeat yfgM CDS COG2976 2654237 2654857 - [S] Uncharacterized protein conserved in bacteria hisS CDS COG0124 2654871 2656145 - [J] Histidyl-tRNA synthetase gcpE CDS COG0821 2656256 2657374 - [I] Enzyme involved in the deoxyxylulose pathway yfgA CDS COG1426 2657401 2658405 - [S] Uncharacterized protein conserved in bacteria 1345 yfgB CDS COG0820 2658697 2659863 - [R] Predicted Fe-S-cluster redox enzyme 1346 ndk CDS COG0105 2660070 2660501 - [F] Nucleoside diphosphate kinase 1347 cds-NP_461462.1 CDS COG1145 2660622 2661485 - [C] Ferredoxin cds-NP_461463.2 CDS COG3302 2661485 2662294 - [R] DMSO reductase anchor subunit cds-NP_461464.1 CDS COG0437 2662287 2662916 - [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_461465.1 CDS COG0243 2662913 2665318 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 1348 pbpC CDS COG4953 2665447 2667762 - [M] Membrane carboxypeptidase/penicillin-binding protein PbpC cds-NP_461467.1 CDS COG2373 2667763 2672697 - [R] Large extracellular alpha-helical protein 1349 sseA_2 CDS COG2897 2672906 2673748 + [P] Rhodanese-related sulfurtransferase 1350 cds-NP_461469.1 CDS NA 2673995 2674663 + NA 1351 sseB_2 CDS ROG1492 2675232 2676017 - NA 1352 pepB CDS COG0260 2676118 2677401 - [E] Leucyl aminopeptidase 1353 yfhJ CDS COG2975 2677648 2677848 - [S] Uncharacterized protein conserved in bacteria fdx CDS COG0633 2677860 2678195 - [C] Ferredoxin hscA CDS COG0443 2678197 2680047 - [O] Molecular chaperone hscB CDS COG1076 2680060 2680575 - [O] DnaJ-domain-containing proteins 1 yfhF CDS COG0316 2680771 2681094 - [S] Uncharacterized conserved protein nifU CDS COG0822 2681123 2681509 - [C] NifU homolog involved in Fe-S cluster nifS CDS COG1104 2681537 2682751 - [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related yfhP CDS COG1959 2682932 2683426 - [K] Predicted transcriptional regulator cds-NP_461480.1 CDS COG0565 2683586 2684317 - [J] rRNA methylase 1354 suhB CDS COG0483 2684436 2685239 + [G] Archaeal fructose-1,6-bisphosphatase and related enzymes of 1355 cds-NP_461482.1 CDS COG1073 2685384 2686262 + [R] Hydrolases of the alpha/beta superfamily 1356 asrA CDS COG1145 2686444 2687487 + [C] Ferredoxin asrB CDS COG0543 2687491 2688309 + [HC] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases asrC CDS COG2221 2688320 2689333 + [C] Dissimilatory sulfite reductase (desulfoviridin), alpha and 1357 cds-NP_461486.1 CDS COG2215 2689334 2690320 - [R] ABC-type uncharacterized transport system, permease component cds-NP_461487.1 CDS COG3683 2690311 2690949 - [R] ABC-type uncharacterized transport system, periplasmic component 1358 csiE CDS COG3711 2691075 2692352 + [K] Transcriptional antiterminator 1359 hcaT CDS NA 2692347 2693486 - NA 1360 glyA CDS COG0112 2693682 2694935 - [E] Glycine/serine hydroxymethyltransferase 1361 hmpA CDS COG1017 2695260 2696450 + [C] Hemoglobin-like flavoprotein 1362 cadC CDS COG3710 2696632 2698176 + [K] DNA-binding winged-HTH domains 1363 cadB CDS COG0531 2698537 2699868 + [E] Amino acid transporters cadA CDS COG1982 2699951 2702095 + [E] Arginine/lysine/ornithine decarboxylases 1364 yjdL CDS COG3104 2702151 2703611 + [E] Dipeptide/tripeptide permease 1365 glnB CDS COG0347 2703660 2703998 - [E] Nitrogen regulatory protein PII yfhA CDS COG2204 2704075 2705412 - [T] Response regulator containing CheY-like receiver, AAA-type yfhG CDS ROG4736 2705409 2706173 - NA yfhK CDS COG0642 2706175 2707617 - [T] Signal transduction histidine kinase 1366 purG CDS COG0046 2708255 2712142 - [F] Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 1367 cds-NP_461501.1 CDS NA 2712164 2712397 + NA yfhD CDS COG4623 2712398 2713942 + [M] Predicted soluble lytic transglycosylase fused to 1368 yfhC CDS COG0590 2713993 2714544 - [FJ] Cytosine/adenosine deaminases yfhB CDS NA 2714569 2715204 - NA cds-NP_461505.1 CDS COG1264 2715208 2716569 - [G] Phosphotransferase system IIB components cds-NP_461506.1 CDS COG2103 2716580 2717473 - [R] Predicted sugar phosphate isomerase 1369 yfhH CDS COG1737 2717589 2718437 + [K] Transcriptional regulators 1370 cds-NP_461508.1 CDS COG1893 2718476 2719393 - [H] Ketopantoate reductase cds-NP_461509.1 CDS NA 2719415 2720611 - NA 1371 cds-NP_461510.1 CDS COG0583 2720727 2721653 + [K] Transcriptional regulator yfhL CDS COG1145 2721691 2721951 + [C] Ferredoxin 1372 acpS CDS COG0736 2722063 2722443 - [I] Phosphopantetheinyl transferase (holo-ACP synthase) pdxJ CDS COG0854 2722443 2723174 - [H] Pyridoxal phosphate biosynthesis protein recO CDS COG1381 2723186 2723914 - [L] Recombinational DNA repair protein (RecF pathway) era CDS COG1159 2723926 2724831 - [R] GTPase rnc CDS COG0571 2724828 2725508 - [K] dsRNA-specific ribonuclease 1373 lepB CDS COG0681 2725782 2726756 - [U] Signal peptidase I lepA CDS COG0481 2726773 2728572 - [M] Membrane GTPase LepA 1374 gogB CDS COG4886 2728977 2730470 + [S] Leucine-rich repeat (LRR) protein 1375 cds-NP_461520.1 CDS NA 2731357 2731902 + NA 1376 cds-NP_461521.1 CDS NA 2733014 2733241 + NA 1377 cds-NP_461522.1 CDS ROG5293 2733338 2733916 - NA cds-NP_461523.1 CDS NA 2733906 2734730 - NA cds-NP_461524.1 CDS COG5301 2734727 2737099 - [R] Phage-related tail fibre protein 1378 cds-NP_461525.2 CDS COG4733 2737434 2740796 - [S] Phage-related protein, tail component cds-NP_461526.1 CDS COG4723 2740858 2741505 - [S] Phage-related protein, tail component cds-NP_461527.1 CDS COG1310 2741403 2742002 - [R] Predicted metal-dependent protease of the PAD1/JAB1 cds-NP_461528.1 CDS COG4672 2742147 2742845 - [S] Phage-related protein cds-NP_461529.1 CDS COG4718 2742855 2743184 - [S] Phage-related protein cds-NP_461530.1 CDS COG5281 2743187 2746282 - [S] Phage-related minor tail protein cds-NP_461531.1 CDS NA 2746254 2746592 - NA cds-NP_461532.1 CDS NA 2746589 2746984 - NA cds-NP_461533.1 CDS COG5492 2747035 2747781 - [N] Bacterial surface proteins containing Ig-like domains cds-NP_461534.1 CDS NA 2747789 2748190 - NA 1379 cds-NP_461535.1 CDS COG0675 2748179 2749429 + [L] Transposase and inactivated derivatives 1380 cds-NP_461536.1 CDS ROG6459 2749478 2750056 - NA cds-NP_461537.1 CDS NA 2750084 2750467 - NA cds-NP_461538.1 CDS NA 2750478 2750837 - NA cds-NP_461539.1 CDS ROG3194 2750895 2751923 - NA cds-NP_461540.1 CDS NA 2751978 2752325 - NA cds-NP_461541.1 CDS COG0616 2752338 2753834 - [OU] Periplasmic serine proteases (ClpP class) cds-NP_461542.1 CDS COG5511 2753824 2755404 - [R] Bacteriophage capsid protein cds-NP_461543.1 CDS ROG0703 2755401 2755604 - NA cds-NP_461544.1 CDS COG5525 2755588 2757519 - [R] Bacteriophage tail assembly protein cds-NP_461545.2 CDS COG4220 2757491 2758036 - [L] Phage DNA packaging protein, Nu1 subunit 1381 cds-NP_461546.1 CDS ROG8156 2758323 2758724 + NA 1382 cds-NP_461547.3 CDS NA 2758960 2759412 - NA cds-NP_461548.1 CDS COG3772 2759430 2759882 - [R] Phage-related lysozyme (muraminidase) cds-NP_461549.1 CDS COG5637 2759866 2760195 - [S] Predicted integral membrane protein 1383 cds-NP_461550.1 CDS NA 2760471 2761157 + NA 1384 rna-STM2615 tRNA NA 2761650 2761723 - NA 1385 cds-NP_461551.1 CDS ROG3242 2762067 2762630 - NA 1386 cds-NP_461552.1 CDS NA 2762903 2763580 - NA cds-NP_461553.1 CDS NA 2763577 2763717 - NA cds-NP_461554.1 CDS NA 2763714 2764325 - NA 1387 cds-NP_461555.1 CDS NA 2764534 2765136 - NA 1388 cds-NP_461556.1 CDS NA 2765552 2765785 - NA 1389 cds-NP_461557.1 CDS NA 2766077 2766370 - NA 1390 cds-NP_461558.1 CDS NA 2766445 2766756 - NA cds-NP_461559.1 CDS COG1349 2766753 2767100 - [KG] Transcriptional regulators of sugar metabolism cds-NP_461560.1 CDS COG1484 2767111 2767860 - [L] DNA replication protein cds-NP_461561.1 CDS NA 2767863 2768846 - NA 1391 cds-NP_461562.1 CDS COG1191 2768931 2769305 - [K] DNA-directed RNA polymerase specialized sigma subunit 1392 cds-NP_461563.1 CDS COG2932 2769630 2770040 + [K] Predicted transcriptional regulator cds-NP_461564.1 CDS NA 2770090 2770350 + NA cds-NP_461565.1 CDS NA 2770343 2770501 + NA cds-NP_461566.1 CDS NA 2770523 2770873 + NA 1393 cds-NP_461567.1 CDS ROG6166 2771000 2773885 + NA cds-NP_461568.3 CDS ROG6587 2773848 2775005 + NA cds-NP_461569.1 CDS NA 2775048 2775287 + NA cds-NP_461570.1 CDS ROG5478 2775328 2775612 + NA 1394 cds-NP_461571.1 CDS COG0582 2775590 2776819 - [L] Integrase 1395 rseC CDS COG3086 2777317 2777796 - [T] Positive regulator of sigma E activity rseB CDS COG3026 2777793 2778749 - [T] Negative regulator of sigma E activity rseA CDS COG3073 2778749 2779399 - [T] Negative regulator of sigma E activity rpoE CDS COG1595 2779431 2780006 - [K] DNA-directed RNA polymerase specialized sigma subunit, 1396 nadB CDS COG0029 2780431 2782053 + [H] Aspartate oxidase 1397 yfiC CDS COG4123 2782038 2782775 - [R] Predicted O-methyltransferase 1398 srmB CDS COG0513 2782906 2784240 + [LKJ] Superfamily II DNA and RNA helicases 1399 yfiE CDS COG0583 2784258 2785157 - [K] Transcriptional regulator 1400 yfiK CDS COG1280 2785260 2785847 + [E] Putative threonine efflux protein 1401 yfiD CDS COG3445 2785909 2786292 - [R] Acid-induced glycyl radical enzyme 1402 ung CDS COG0692 2786611 2787300 + [L] Uracil DNA glycosylase 1403 yfiF CDS COG0566 2787416 2788453 - [J] rRNA methylases 1404 trxC CDS COG0526 2788657 2789076 + [OC] Thiol-disulfide isomerase and thioredoxins yfiP CDS COG3148 2789149 2789829 + [S] Uncharacterized conserved protein yfiQ CDS COG1042 2789883 2792543 + [C] Acyl-CoA synthetase (NDP forming) 1405 pssA CDS NA 2792658 2794013 + NA yfiM CDS COG5544 2794058 2794381 + [R] Predicted periplasmic lipoprotein 1406 kgtP CDS COG0477 2794378 2795679 - [GEPR] Permeases of the major facilitator superfamily 1407 cds-NP_461590.1 CDS ROG2172 2795783 2796238 - NA 1408 rrfG rRNA NA 2796443 2796564 - NA rrlG rRNA NA 2796758 2799767 - NA gltW tRNA NA 2799961 2800033 - NA rrsG rRNA NA 2800121 2801663 - NA 1409 clpB CDS COG0542 2802119 2804692 - [O] ATPases with chaperone activity, ATP-binding subunit 1410 yfiH CDS COG1496 2804822 2805553 - [S] Uncharacterized conserved protein rluD CDS COG0564 2805550 2806530 - [J] Pseudouridylate synthases, 23S RNA-specific 1411 yfiO CDS COG4105 2806662 2807399 + [R] DNA uptake lipoprotein 1412 yfiA CDS COG1544 2807671 2808009 + [J] Ribosome-associated protein Y (PSrp-1) 1413 cds-NP_449055.1 CDS NA 2808113 2808160 + NA 1414 pheA CDS COG0077 2808260 2809420 + [E] Prephenate dehydratase 1415 cds-NP_461598.1 CDS COG3386 2809381 2810289 - [G] Gluconolactonase 1416 tyrA CDS COG1605 2810347 2811468 - [E] Chorismate mutase aroF CDS COG0722 2811478 2812548 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 1417 yfiR CDS ROG7826 2812988 2813506 + NA yfiN CDS COG2199 2813499 2814719 + [T] FOG: GGDEF domain 1418 rplS CDS COG0335 2814876 2815223 - [J] Ribosomal protein L19 trmD CDS COG0336 2815264 2816031 - [J] tRNA-(guanine-N1)-methyltransferase rimM CDS COG0806 2816076 2816624 - [J] RimM protein, required for 16S rRNA rpsP CDS COG0228 2816643 2816891 - [J] Ribosomal protein S16 ffh CDS COG0541 2817205 2818566 - [U] Signal recognition particle GTPase 1419 corE CDS COG4137 2818732 2819523 + [R] ABC-type uncharacterized transport system, permease component yfjD CDS COG4536 2819588 2820829 + [P] Putative Mg2+ and Co2+ transporter CorB 1420 cds-NP_461610.1 CDS NA 2820950 2821555 + NA 1421 grpE CDS COG0576 2821590 2822180 - [O] Molecular chaperone GrpE (heat shock protein) cds-NP_449071.1 CDS NA 2822177 2822371 - NA 1422 yfjB CDS COG0061 2822303 2823181 + [G] Predicted sugar kinase recN CDS COG0497 2823267 2824928 + [L] ATPase involved in DNA repair smpA CDS COG2913 2825077 2825415 + [J] Small protein A (tmRNA-binding) 1423 yfjF CDS COG2914 2825581 2825871 - [S] Uncharacterized protein conserved in bacteria yfjG CDS COG2867 2825861 2826337 - [I] Oligoketide cyclase/lipid transport protein 1424 smpB CDS COG0691 2826487 2826969 + [O] tmRNA-binding protein 1425 cds-NP_461619.1 CDS COG1538 2839122 2840531 + [MU] Outer membrane protein cds-NP_461620.1 CDS COG2274 2840528 2842708 + [V] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal cds-NP_461621.1 CDS ROG0722 2842716 2843879 + NA 1426 cds-NP_461622.1 CDS ROG4411 2844431 2844649 - NA 1427 cds-NP_461623.1 CDS COG3500 2844718 2845818 - [R] Phage protein D cds-NP_461624.1 CDS COG3499 2845815 2846300 - [R] Phage protein U cds-NP_461625.1 CDS COG5283 2846297 2849104 - [S] Phage-related tail protein cds-NP_461626.1 CDS NA 2849097 2849216 - NA cds-NP_461627.1 CDS NA 2849231 2849533 - NA cds-NP_461628.1 CDS COG3498 2849588 2850103 - [R] Phage tail tube protein FII cds-NP_461629.1 CDS COG3497 2850113 2851285 - [R] Phage tail sheath protein FI 1428 cds-NP_461630.1 CDS COG1961 2851388 2851945 - [L] Site-specific recombinases, DNA invertase Pin homologs 1429 cds-NP_461631.1 CDS COG5301 2851915 2852994 + [R] Phage-related tail fibre protein cds-NP_461632.1 CDS ROG5293 2853001 2853408 + NA 1430 cds-NP_461633.1 CDS NA 2853412 2854029 - NA cds-NP_461634.1 CDS COG5301 2853999 2855573 - [R] Phage-related tail fibre protein cds-NP_461635.1 CDS COG4385 2855570 2856175 - [R] Bacteriophage P2-related tail formation protein cds-NP_461636.1 CDS COG3948 2856168 2857076 - [R] Phage-related baseplate assembly protein cds-NP_461637.1 CDS COG3628 2857063 2857422 - [R] Phage baseplate assembly protein W cds-NP_461638.1 CDS COG4540 2857419 2857997 - [R] Phage P2 baseplate assembly protein gpV 1431 cds-NP_461639.1 CDS ROG2525 2858066 2858512 - NA cds-NP_461640.1 CDS ROG3388 2858505 2858936 - NA cds-NP_461641.1 CDS ROG4412 2858899 2859183 - NA cds-NP_461642.1 CDS ROG2474 2859032 2859460 - NA 1432 cds-NP_461643.3 CDS COG3772 2859837 2860346 - [R] Phage-related lysozyme (muraminidase) cds-NP_461644.1 CDS NA 2860327 2860542 - NA cds-NP_461645.1 CDS COG5004 2860546 2860749 - [R] P2-like prophage tail protein X cds-NP_461646.1 CDS ROG3765 2860749 2861213 - NA 1433 cds-NP_461647.1 CDS ROG2442 2861307 2861960 - NA cds-NP_461648.1 CDS ROG2019 2861964 2863046 - NA cds-NP_461649.1 CDS ROG2224 2863063 2863896 - NA 1434 cds-NP_461650.1 CDS COG5484 2864039 2865805 + [S] Uncharacterized conserved protein cds-NP_461651.1 CDS COG5518 2865805 2866845 + [R] Bacteriophage capsid portal protein 1435 cds-NP_461652.3 CDS ROG0504 2866931 2868682 - NA 1436 cds-NP_461653.1 CDS NA 2868896 2869627 - NA cds-NP_461654.1 CDS NA 2869687 2869992 - NA cds-NP_461655.1 CDS NA 2869931 2870119 - NA 1437 cds-NP_461656.1 CDS ROG4165 2870272 2872701 - NA cds-NP_461657.1 CDS COG0338 2872692 2873549 - [L] Site-specific DNA methylase cds-NP_461658.1 CDS COG1734 2873546 2873773 - [T] DnaK suppressor protein cds-NP_461659.1 CDS NA 2873773 2874006 - NA 1438 cds-NP_461660.1 CDS COG2964 2874074 2874415 - [S] Uncharacterized protein conserved in bacteria 1439 cds-NP_461661.1 CDS NA 2874635 2875093 + NA 1440 cds-NP_461662.1 CDS NA 2875041 2875274 - NA cds-NP_461663.1 CDS NA 2875282 2875791 - NA cds-NP_461664.1 CDS NA 2875827 2876066 - NA 1441 cds-NP_461665.1 CDS COG2932 2876183 2876815 + [K] Predicted transcriptional regulator cds-NP_461666.1 CDS COG0582 2876819 2877844 + [L] Integrase cds-NP_461667.1 CDS COG0582 2878173 2879237 + [L] Integrase 1442 cds-NP_461668.1 CDS NA 2879465 2880058 + NA 1443 cds-NP_461669.1 CDS ROG5712 2880448 2881641 + NA 1444 cds-NP_461670.1 CDS ROG5807 2881976 2882803 - NA 1445 cds-NP_461671.1 CDS COG3311 2883254 2883469 + [K] Predicted transcriptional regulator cds-NP_461672.1 CDS COG5519 2883505 2885574 + [L] Superfamily II helicase and inactivated derivatives 1446 cds-NP_461673.1 CDS COG3950 2886077 2887360 + [R] Predicted ATP-binding protein involved in virulence cds-NP_461674.1 CDS NA 2887405 2888223 + NA 1447 cds-NP_461675.1 CDS COG1476 2888377 2888733 - [K] Predicted transcriptional regulators 1448 cds-NP_461676.1 CDS COG3423 2888828 2889112 + [K] Predicted transcriptional regulator 1449 cds-NP_461677.1 CDS COG3730 2889225 2889746 + [G] Phosphotransferase system sorbitol-specific component IIC cds-NP_461678.1 CDS COG3731 2889743 2890117 + [G] Phosphotransferase system sorbitol-specific component IIA cds-NP_461679.1 CDS COG3732 2890114 2891094 + [G] Phosphotransferase system sorbitol-specific component IIBC cds-NP_461680.1 CDS COG0673 2891105 2892118 + [R] Predicted dehydrogenases and related proteins 1450 cds-NP_461681.1 CDS ROG2406 2892413 2893615 + NA 1451 cds-NP_461682.1 CDS COG0269 2893689 2894324 - [G] 3-hexulose-6-phosphate synthase and related proteins cds-NP_461683.1 CDS COG0794 2894348 2894911 - [M] Predicted sugar phosphate isomerase involved in cds-NP_461684.1 CDS COG2140 2894911 2895753 - [GR] Thermophilic glucose-6-phosphate isomerase and related metalloenzymes cds-NP_461685.1 CDS COG1263 2895883 2897424 - [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 1452 cds-NP_461686.1 CDS COG4533 2897647 2899326 + [R] ABC-type uncharacterized transport system, periplasmic component 1453 cds-NP_461687.1 CDS ROG1837 2900443 2901318 + NA 1454 cds-NP_461688.1 CDS NA 2901484 2903358 + NA 1455 cds-NP_461689.1 CDS NA 2903618 2904901 - NA 1456 cds-NP_449149.1 CDS COG0582 2905479 2906075 + [L] Integrase 1457 cds-NP_449150.1 CDS COG2801 2906456 2906923 - [L] Transposase and inactivated derivatives 1458 cds-NP_461692.1 CDS ROG6591 2907070 2907336 - NA 1459 cds-NP_461693.1 CDS NA 2907789 2908427 - NA cds-NP_461694.1 CDS COG3972 2908424 2910406 - [R] Superfamily I DNA and RNA helicases 1460 fljA CDS NA 2912627 2913166 - NA 1461 fljB CDS COG1344 2913234 2914754 - [N] Flagellin and related hook-associated proteins 1462 hin CDS COG1961 2914846 2915418 + [L] Site-specific recombinases, DNA invertase Pin homologs 1463 iroB CDS COG1819 2916381 2917496 + [GC] Glycosyl transferases, related to UDP-glucuronosyltransferase iroC CDS COG1132 2917577 2921230 + [V] ABC-type multidrug transport system, ATPase and iroD CDS COG2382 2921340 2922584 + [P] Enterochelin esterase and related enzymes iroE CDS COG2819 2922616 2923551 + [R] Predicted hydrolase of the alpha/beta superfamily 1464 iroN CDS COG4771 2923593 2925773 - [P] Outer membrane receptor for ferrienterochelin and 1465 cds-NP_449164.1 CDS NA 2926299 2926631 - NA 1466 cds-NP_461706.1 CDS COG1357 2926806 2927858 - [S] Uncharacterized low-complexity proteins 1467 virK CDS COG2990 2928377 2929306 + [S] Uncharacterized protein conserved in bacteria 1468 mig-14 CDS NA 2929599 2930495 + NA 1469 nxiA CDS COG3376 2931217 2932230 - [P] High-affinity nickel permease 1470 tctE CDS COG4251 2932363 2933778 - [T] Bacteriophytochrome (light-regulated signal transduction histidine kinase) tctD CDS COG0745 2933765 2934439 - [TK] Response regulators consisting of a CheY-like 1471 cds-NP_461712.1 CDS COG3181 2934594 2935571 + [S] Uncharacterized protein conserved in bacteria cds-NP_461713.3 CDS ROG1874 2935583 2936017 + NA cds-NP_461714.1 CDS COG3333 2936028 2937542 + [S] Uncharacterized protein conserved in bacteria 1472 cds-NP_461715.3 CDS ROG3396 2937836 2938822 + NA ygaF CDS COG0579 2938848 2940116 + [R] Predicted dehydrogenase gabD CDS COG1012 2940138 2941586 + [C] NAD-dependent aldehyde dehydrogenases gabT CDS COG0160 2941601 2942884 + [E] 4-aminobutyrate aminotransferase and related aminotransferases gabP CDS COG1113 2943014 2944414 + [E] Gamma-aminobutyrate permease and related permeases ygaE CDS COG1802 2944456 2945133 + [K] Transcriptional regulators 1473 ygaU CDS COG1652 2945155 2945604 - [S] Uncharacterized protein containing LysM domain yqaE CDS COG0401 2945704 2945862 - [S] Uncharacterized homolog of Blt101 1474 cds-NP_461723.1 CDS COG0640 2946045 2946344 + [K] Predicted transcriptional regulators ygaP CDS COG0607 2946354 2946881 + [P] Rhodanese-related sulfurtransferase 1475 stpA CDS COG2916 2947229 2947630 - [R] DNA-binding protein H-NS 1476 cds-NP_461726.1 CDS ROG1113 2948329 2948778 + NA 1477 ygaC CDS COG4747 2948813 2949163 - [R] ACT domain-containing protein 1478 ygaM CDS COG4575 2949313 2949651 + [S] Uncharacterized conserved protein 1479 cds-NP_461729.1 CDS COG1167 2949735 2951069 - [KE] Transcriptional regulators containing a DNA-binding HTH 1480 cds-NP_461730.1 CDS COG2128 2951158 2951589 + [S] Uncharacterized conserved protein 1481 nrdH CDS COG0695 2951861 2952106 + [O] Glutaredoxin and related proteins nrdI CDS COG1780 2952103 2952513 + [F] Protein involved in ribonucleotide reduction nrdE CDS COG0209 2952486 2954630 + [F] Ribonucleotide reductase, alpha subunit nrdF CDS COG0208 2954641 2955600 + [F] Ribonucleotide reductase, beta subunit 1482 proV CDS COG4175 2955955 2957157 + [E] ABC-type proline/glycine betaine transport system, ATPase proW CDS COG4176 2957150 2958214 + [E] ABC-type proline/glycine betaine transport system, permease proX CDS COG2113 2958284 2959279 + [E] ABC-type proline/glycine betaine transport systems, periplasmic 1483 cds-NP_461738.1 CDS ROG2472 2959444 2960628 + NA 1484 emrR CDS COG1846 2961125 2961655 + [K] Transcriptional regulators emrA CDS COG1566 2961782 2962954 + [V] Multidrug resistance efflux pump emrB CDS COG2211 2962971 2964509 + [G] Na+/melibiose symporter and related transporters 1485 cds-NP_461742.1 CDS ROG6864 2964558 2965928 - NA 1486 luxS CDS COG1854 2966274 2966789 - [T] LuxS protein involved in autoinducer AI2 gshA CDS COG2918 2966939 2968495 - [H] Gamma-glutamylcysteine synthetase yqaA CDS COG1238 2968572 2968997 - [S] Predicted membrane protein yqaB CDS COG0637 2968994 2969560 - [R] Predicted phosphatase/phosphohexomutase 1487 rna-STM2821 tRNA NA 2969932 2970005 - NA rna-STM2822 tRNA NA 2970202 2970275 - NA rna-STM2823 tRNA NA 2970341 2970414 - NA rna-STM2824 tRNA NA 2970480 2970553 - NA rna-STM2825 tRNA NA 2970560 2970649 - NA 1488 csrA CDS COG1551 2970955 2971140 - [T] Carbon storage regulator (could also regulate 1489 alaS CDS COG0013 2971375 2974005 - [J] Alanyl-tRNA synthetase 1490 oraA CDS COG2137 2974241 2974741 - [R] Uncharacterized protein conserved in bacteria recA CDS COG0468 2974858 2975919 - [L] RecA/RadA recombinase ygaD CDS COG1546 2976004 2976501 - [R] Uncharacterized protein (competence- and mitomycin-induced) 1491 mltB CDS COG2951 2976979 2978058 - [M] Membrane-bound lytic murein transglycosylase B 1492 srlA CDS COG3730 2978312 2978875 + [G] Phosphotransferase system sorbitol-specific component IIC srlE CDS COG3732 2978872 2979843 + [G] Phosphotransferase system sorbitol-specific component IIBC slrB CDS COG3731 2979855 2980217 + [G] Phosphotransferase system sorbitol-specific component IIA srlD CDS COG1028 2980229 2981008 + [IQR] Dehydrogenases with different specificities (related to gutM CDS COG4578 2981084 2981443 + [K] Glucitol operon activator 1493 srlR CDS COG1349 2981641 2982414 + [KG] Transcriptional regulators of sugar metabolism gutQ CDS COG0794 2982446 2983372 + [M] Predicted sugar phosphate isomerase involved in 1494 ygaA CDS COG3604 2983369 2984889 - [KT] Transcriptional regulator containing GAF, AAA-type ATPase, 1495 cds-NP_461761.1 CDS COG0426 2985075 2986514 + [C] Uncharacterized flavoproteins ygbD CDS COG0446 2986511 2987644 + [R] Uncharacterized NAD(FAD)-dependent dehydrogenases 1496 hypF CDS COG0068 2987741 2989981 - [O] Hydrogenase maturation factor hydN CDS COG1142 2990127 2990672 - [C] Fe-S-cluster-containing hydrogenase components 2 1497 cds-NP_461765.1 CDS NA 2990873 2991682 - NA hycI CDS COG0680 2991709 2992179 - [C] Ni,Fe-hydrogenase maturation factor hycH CDS ROG4904 2992172 2992582 - NA hycG CDS COG3260 2992579 2993346 - [C] Ni,Fe-hydrogenase III small subunit hycF CDS COG1143 2993346 2993888 - [C] Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 hycE CDS COG3261 2993898 2995607 - [C] Ni,Fe-hydrogenase III large subunit hycD CDS COG0650 2995625 2996548 - [C] Formate hydrogenlyase subunit 4 hycC CDS COG0651 2996551 2998377 - [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, hycB CDS COG1142 2998377 2998985 - [C] Fe-S-cluster-containing hydrogenase components 2 1498 hycA CDS NA 2999131 2999592 - NA 1499 hypA CDS COG0375 2999802 3000158 + [R] Zn finger protein HypA/HybF (possibly regulating hypB CDS COG0378 3000227 3001099 + [OK] Ni2+-binding GTPase involved in regulation of hypC CDS COG0298 3001090 3001362 + [O] Hydrogenase maturation factor hypD CDS COG0409 3001362 3002483 + [O] Hydrogenase maturation factor hypE CDS COG0309 3002522 3003490 + [O] Hydrogenase maturation factor fhlA CDS COG3604 3003709 3005787 + [KT] Transcriptional regulator containing GAF, AAA-type ATPase, 1500 ygbA CDS ROG0422 3005849 3006193 - NA 1501 sitA CDS COG0803 3006375 3007292 + [P] ABC-type metal ion transport system, periplasmic sitB CDS COG1121 3007289 3008110 + [P] ABC-type Mn/Zn transport systems, ATPase component sitC CDS COG1108 3008107 3008967 + [P] ABC-type Mn2+/Zn2+ transport systems, permease components sitD CDS COG1108 3008958 3009806 + [P] ABC-type Mn2+/Zn2+ transport systems, permease components 1502 avrA CDS NA 3009905 3010813 - NA 1503 sprB CDS NA 3010974 3011729 - NA 1504 hilC CDS COG2207 3012114 3013001 - [K] AraC-type DNA-binding domain-containing proteins 1505 cds-NP_461789.1 CDS NA 3013346 3013798 - NA orgA CDS NA 3013795 3014475 - NA cds-NP_461791.1 CDS NA 3014432 3015031 - NA prgK CDS COG4669 3015003 3015761 - [U] Type III secretory pathway, lipoprotein EscJ prgJ CDS NA 3015758 3016063 - NA prgI CDS ROG1382 3016082 3016324 - NA prgH CDS COG1589 3016349 3017527 - [M] Cell division septal protein 1506 hilD CDS COG2207 3017843 3018772 + [K] AraC-type DNA-binding domain-containing proteins 1507 hilA CDS COG3710 3019863 3021524 + [K] DNA-binding winged-HTH domains iagB CDS ROG2490 3021542 3022024 + NA 1508 sptP CDS COG2453 3022078 3023709 - [T] Predicted protein-tyrosine phosphatase sicP CDS ROG7766 3023696 3024088 - NA cds-NP_449260.1 CDS NA 3024115 3024375 - NA iacP CDS COG0236 3024419 3024667 - [IQ] Acyl carrier protein sipA CDS NA 3024686 3026743 - NA sipD CDS ROG4917 3026762 3027793 - NA 1509 sipC CDS COG1511 3027864 3029093 - [S] Predicted membrane protein sipB CDS COG4720 3029121 3030902 - [S] Predicted membrane protein sicA CDS COG0457 3030905 3031402 - [R] FOG: TPR repeat spaS CDS COG4792 3031540 3032610 - [U] Type III secretory pathway, component EscU spaR CDS COG4791 3032597 3033388 - [U] Type III secretory pathway, component EscT spaQ CDS COG4794 3033392 3033652 - [U] Type III secretory pathway, component EscS spaP CDS COG4790 3033678 3034352 - [U] Type III secretory pathway, component EscR spaO CDS COG1886 3034342 3035253 - [NU] Flagellar motor switch/type III secretory pathway invJ CDS NA 3035253 3036263 - NA invI CDS ROG4158 3036263 3036706 - NA invC CDS COG1157 3036684 3037979 - [NU] Flagellar biosynthesis/type III secretory pathway ATPase invB CDS NA 3037976 3038383 - NA invA CDS COG4789 3038407 3040464 - [U] Type III secretory pathway, component EscV invE CDS ROG3853 3040489 3041607 - NA invG CDS COG1450 3041604 3043292 - [NU] Type II secretory pathway, component PulD invF CDS COG2207 3043289 3043939 - [K] AraC-type DNA-binding domain-containing proteins 1510 invH CDS NA 3044396 3044839 + NA 1511 cds-NP_461822.1 CDS NA 3045270 3045719 + NA cds-NP_461823.1 CDS NA 3045704 3046051 + NA 1512 cds-NP_461824.1 CDS NA 3046324 3046650 - NA 1513 cds-NP_461825.1 CDS COG4453 3047339 3047629 + [S] Uncharacterized protein conserved in bacteria cds-NP_461826.1 CDS COG0454 3047626 3048153 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1514 cds-NP_449286.1 CDS ROG0054 3048226 3048414 - NA 1515 pphB CDS NA 3048778 3049434 + NA 1516 cds-NP_461829.1 CDS NA 3049606 3050127 - NA 1517 mutS CDS COG0249 3050286 3052853 + [L] Mismatch repair ATPase (MutS family) 1518 cds-NP_461831.1 CDS COG4460 3052909 3053289 - [S] Uncharacterized protein conserved in bacteria cds-NP_461832.1 CDS NA 3053286 3054494 - NA 1519 cds-NP_461833.1 CDS COG0583 3054582 3055514 + [K] Transcriptional regulator 1520 cds-NP_461834.1 CDS COG2610 3055556 3057052 - [GE] H+/gluconate symporter and related permeases cds-NP_461835.1 CDS COG0451 3057049 3057999 - [MG] Nucleoside-diphosphate-sugar epimerases ygbM CDS COG3622 3058039 3058815 - [G] Hydroxypyruvate isomerase ygbL CDS COG0235 3058820 3059458 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and ygbK CDS COG3395 3059455 3060717 - [S] Uncharacterized protein conserved in bacteria ygbJ CDS COG2084 3060711 3061634 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 1521 ygbI CDS COG1349 3061831 3062595 + [KG] Transcriptional regulators of sugar metabolism 1522 cds-NP_461841.1 CDS COG1846 3062614 3063018 - [K] Transcriptional regulators 1523 cds-NP_461842.1 CDS COG0163 3063189 3063782 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase cds-NP_461843.1 CDS COG0043 3063782 3065209 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases cds-NP_461844.1 CDS NA 3065220 3065456 + NA 1524 rpoS CDS COG0568 3065501 3066493 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) nlpD CDS COG0739 3066556 3067689 - [M] Membrane proteins related to metalloendopeptidases pcm CDS COG2518 3067865 3068491 - [O] Protein-L-isoaspartate carboxylmethyltransferase surE CDS COG0496 3068485 3069246 - [R] Predicted acid phosphatase ygbO CDS COG0585 3069227 3070276 - [S] Uncharacterized conserved protein ispF CDS COG0245 3070273 3070752 - [I] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD CDS COG1211 3070752 3071462 - [I] 4-diphosphocytidyl-2-methyl-D-erithritol synthase ygbQ CDS COG2919 3071481 3071792 - [D] Septum formation initiator 1525 ygbE CDS NA 3071983 3072339 - NA cysC CDS COG0529 3072357 3072962 - [P] Adenylylsulfate kinase and related kinases cysN CDS COG2895 3072949 3074388 - [P] GTPases - Sulfate adenylate transferase subunit cysD CDS COG0175 3074398 3075306 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase 1526 iap CDS COG2234 3075557 3076603 + [R] Predicted aminopeptidases 1527 ygbF CDS ROG0186 3078251 3078547 - NA cds-NP_461859.1 CDS COG1518 3078544 3079464 - [L] Uncharacterized protein predicted to be involved ygcH CDS ROG0140 3079461 3080111 - NA cds-NP_461861.1 CDS ROG0047 3080093 3080839 - NA yghJ CDS ROG0031 3080850 3081908 - NA cds-NP_461863.1 CDS ROG1578 3081922 3082482 - NA cds-NP_461864.1 CDS ROG2522 3082479 3084035 - NA ygcB CDS COG1203 3084047 3086710 - [R] Predicted helicases 1528 sopD CDS NA 3087155 3088108 + NA 1529 cysH CDS COG0175 3088196 3088930 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase cysI CDS COG0155 3089006 3090718 - [P] Sulfite reductase, beta subunit (hemoprotein) cysJ CDS COG0369 3090718 3092517 - [P] Sulfite reductase, alpha subunit (flavoprotein) 1530 ptpS CDS COG0720 3092941 3093303 + [H] 6-pyruvoyl-tetrahydropterin synthase 1531 cds-NP_461871.1 CDS COG1237 3093391 3094188 - [R] Metal-dependent hydrolases of the beta-lactamase superfamily 1532 ygcF CDS COG0602 3096564 3097235 - [O] Organic radical activating enzymes eno CDS COG0148 3097371 3098669 - [G] Enolase pyrG CDS COG0504 3098752 3100389 - [F] CTP synthase (UTP-ammonia lyase) 1533 mazG CDS COG1694 3100617 3101417 - [R] Predicted pyrophosphatase 1534 cds-NP_461876.3 CDS COG3609 3102447 3102803 - [K] Predicted transcriptional regulators containing the CopG/Arc/MetJ 1535 relA CDS COG0317 3102887 3105121 - [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases ygcA CDS COG2265 3105173 3106468 - [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 1536 barA CDS COG0642 3106526 3109282 + [T] Signal transduction histidine kinase 1537 cds-NP_461880.1 CDS COG1929 3109326 3110468 - [G] Glycerate kinase gudD CDS COG4948 3110546 3111886 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of ygcY CDS COG4948 3111907 3113247 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of gudT CDS COG2271 3113244 3114602 - [G] Sugar phosphate permease 1538 cds-NP_461884.1 CDS COG0716 3115083 3115532 - [C] Flavodoxins yqcB CDS COG0564 3115551 3116333 - [J] Pseudouridylate synthases, 23S RNA-specific yqcC CDS COG3098 3116333 3116662 - [S] Uncharacterized protein conserved in bacteria 1539 syd CDS ROG1988 3117274 3117819 - NA 1540 yqcD CDS COG2904 3117888 3118736 + [S] Uncharacterized protein conserved in bacteria 1541 ygdH CDS COG1611 3118849 3120213 + [R] Predicted Rossmann fold nucleotide-binding protein 1542 sdaC CDS COG0814 3120778 3122067 + [E] Amino acid permeases sdaB CDS COG1760 3122126 3123493 + [E] L-serine deaminase 1543 exo CDS COG0258 3123604 3124419 + [L] 5'-3' exonuclease (including N-terminal domain of 1544 fucO CDS COG1454 3124511 3125659 - [C] Alcohol dehydrogenase, class IV fucA CDS COG0235 3125676 3126323 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 1545 fucI CDS COG2407 3128226 3130001 + [G] L-fucose isomerase and related proteins fucK CDS COG1070 3130102 3131520 + [G] Sugar (pentulose and hexulose) kinases fucU CDS COG4154 3131522 3131944 + [G] Fucose dissimilation pathway protein FucU fucR CDS COG1349 3132002 3132712 + [KG] Transcriptional regulators of sugar metabolism 1546 ygdE CDS COG2933 3132771 3133871 - [R] Predicted SAM-dependent methyltransferase ygdD CDS COG2363 3133864 3134259 - [S] Uncharacterized small membrane protein gcvA CDS COG0583 3134278 3135195 - [K] Transcriptional regulator 1547 ygdI CDS ROG7894 3135542 3135769 - NA 1548 csdA CDS COG0520 3135962 3137167 + [E] Selenocysteine lyase ygdK CDS COG2166 3137167 3137610 + [R] SufE protein probably involved in Fe-S 1549 cds-NP_461905.3 CDS COG2962 3137910 3138797 + [R] Predicted permeases 1550 ygdL CDS COG1179 3138849 3139655 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and 1551 mltA CDS COG2821 3139765 3140862 - [M] Membrane-bound lytic murein transglycosylase 1552 metZ tRNA NA 3141070 3141143 + NA metW tRNA NA 3141176 3141249 + NA 1553 amiC CDS COG0860 3141362 3142615 - [M] N-acetylmuramoyl-L-alanine amidase 1554 argA CDS COG0548 3142848 3144179 + [E] Acetylglutamate kinase 1555 recD CDS COG0507 3144282 3146117 - [L] ATP-dependent exoDNAse (exonuclease V), alpha subunit recB CDS COG1074 3146114 3149659 - [L] ATP-dependent exoDNAse (exonuclease V) beta subunit ptr CDS COG1025 3149652 3152540 - [O] Secreted/periplasmic Zn-dependent peptidases, insulinase-like 1556 recC CDS COG1330 3152718 3156089 - [L] Exonuclease V gamma subunit ppdC CDS COG4967 3156105 3156425 - [NU] Tfp pilus assembly protein PilV ygdB CDS NA 3156410 3156817 - NA ppdB CDS COG4795 3156814 3157377 - [U] Type II secretory pathway, component PulJ ppdA CDS COG2165 3157368 3157838 - [NU] Type II secretory pathway, pseudopilin PulG 1557 thyA CDS COG0207 3158023 3158817 - [F] Thymidylate synthase lgt CDS COG0682 3158824 3159699 - [M] Prolipoprotein diacylglyceryltransferase 1558 ptsP CDS COG3605 3159915 3162161 - [T] Signal transduction protein containing GAF and ygdP CDS COG0494 3162174 3162704 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1559 mutH CDS COG3066 3163387 3164082 + [L] DNA mismatch repair protein 1560 ygdQ CDS COG0861 3164264 3164977 + [P] Membrane protein TerC, possibly involved in 1561 ygdR CDS ROG7894 3165147 3165365 + NA 1562 tas CDS COG0667 3165556 3166596 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1563 ygeD CDS NA 3166683 3167885 - NA aas CDS COG0318 3167878 3170037 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1564 galR CDS COG1609 3170630 3171658 + [K] Transcriptional regulators cds-NP_461929.1 CDS COG1609 3171669 3172691 + [K] Transcriptional regulators 1565 lysA CDS COG0019 3172701 3173963 - [E] Diaminopimelate decarboxylase 1566 lysR CDS COG0583 3174081 3175016 + [K] Transcriptional regulator 1567 ygeA CDS COG1794 3174988 3175695 - [M] Aspartate racemase 1568 araE CDS COG2814 3175808 3177226 - [G] Arabinose efflux permease 1569 kduD CDS COG1028 3177580 3178341 - [IQR] Dehydrogenases with different specificities (related to kduI CDS COG3717 3178398 3179234 - [G] 5-keto 4-deoxyuronate isomerase 1570 yqeF CDS COG0183 3179664 3180842 - [I] Acetyl-CoA acetyltransferase cds-NP_461937.1 CDS COG0583 3180965 3181828 - [K] Transcriptional regulator 1571 cds-NP_461938.1 CDS COG4125 3181905 3182387 + [S] Predicted membrane protein 1572 cds-NP_461939.1 CDS COG0814 3182529 3183758 + [E] Amino acid permeases 1573 yohL CDS COG1937 3183789 3184061 - [S] Uncharacterized protein conserved in bacteria 1574 yohM CDS COG2215 3184183 3185049 + [R] ABC-type uncharacterized transport system, permease component 1575 cds-NP_461942.1 CDS NA 3185259 3186017 - NA 1576 cds-NP_461943.1 CDS COG3539 3186660 3187736 - [NU] P pilus assembly protein, pilin FimA stdC CDS COG3121 3187733 3188476 - [NU] P pilus assembly protein, chaperone PapD stdB CDS COG3188 3188517 3191006 - [NU] P pilus assembly protein, porin PapC stdA CDS COG3539 3191126 3191836 - [NU] P pilus assembly protein, pilin FimA 1577 cds-NP_461947.1 CDS NA 3192429 3193061 - NA cds-NP_461948.1 CDS COG3637 3193108 3193644 - [M] Opacity protein and related surface antigens 1578 tnpA_4 CDS COG1943 3194324 3194782 - [L] Transposase and inactivated derivatives 1579 cds-NP_461950.1 CDS COG1487 3195162 3195560 - [R] Predicted nucleic acid-binding protein, contains PIN cds-NP_461951.1 CDS COG4456 3195560 3195787 - [S] Virulence-associated protein and related proteins 1580 cds-NP_449411.1 CDS NA 3195964 3196215 + NA 1581 cds-NP_461953.1 CDS ROG4515 3196490 3197296 + NA 1582 glyU tRNA NA 3197431 3197501 - NA 1583 cds-NP_461954.1 CDS COG0739 3197581 3198339 - [M] Membrane proteins related to metalloendopeptidases 1584 idi CDS COG1443 3198604 3199149 + [I] Isopentenyldiphosphate isomerase 1585 lysS CDS COG1190 3199225 3200742 - [J] Lysyl-tRNA synthetase (class II) prfB CDS COG1186 3200752 3201633 - [J] Protein chain release factor B 1586 recJ CDS COG0608 3201955 3203688 - [L] Single-stranded DNA-specific exonuclease dsbC CDS COG1651 3203694 3204407 - [O] Protein-disulfide isomerase xerD CDS COG4974 3204431 3205327 - [L] Site-specific recombinase XerD 1587 fldB CDS COG0716 3205440 3205961 + [C] Flavodoxins 1588 ygfX CDS NA 3206014 3206427 - NA ygfY CDS COG2938 3206408 3206674 - [S] Uncharacterized conserved protein 1589 ygfZ CDS COG0354 3206924 3207904 + [R] Predicted aminomethyltransferase related to GcvT 1590 yqfA CDS COG1272 3208020 3208679 - [R] Predicted membrane protein, hemolysin III homolog 1591 yqfB CDS COG3097 3208843 3209154 - [S] Uncharacterized protein conserved in bacteria 1592 bglA CDS COG2723 3209313 3210746 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 1593 cds-NP_461968.1 CDS ROG2209 3210794 3211687 - NA 1594 gcvP CDS COG1003 3212143 3215016 - [E] Glycine cleavage system protein P (pyridoxal-binding), gcvH CDS COG0509 3215179 3215568 - [E] Glycine cleavage system H protein (lipoate-binding) gcvT CDS COG0404 3215594 3216688 - [E] Glycine cleavage system T protein (aminomethyltransferase) 1595 visC CDS COG0654 3217143 3218345 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases ubiH CDS COG0654 3218471 3219649 - [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases pepP CDS COG0006 3219646 3220962 - [E] Xaa-Pro aminopeptidase ygfB CDS COG3079 3220988 3221572 - [S] Uncharacterized protein conserved in bacteria 1596 ygfE CDS COG3027 3221733 3222062 + [S] Uncharacterized protein conserved in bacteria 1597 ygfA CDS COG0212 3222356 3222904 + [H] 5-formyltetrahydrofolate cyclo-ligase 1598 serA CDS COG0111 3223285 3224517 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1599 rpiA CDS COG0120 3224783 3225442 - [G] Ribose 5-phosphate isomerase 1600 iciA CDS COG0583 3225596 3226489 + [K] Transcriptional regulator 1601 yggE CDS COG2968 3226755 3227501 - [S] Uncharacterized conserved protein 1602 yggA CDS COG1279 3227595 3228230 - [R] Lysine efflux permease 1603 yggB CDS COG0668 3228430 3229290 - [M] Small-conductance mechanosensitive channel 1604 fba CDS COG0191 3229517 3230596 - [G] Fructose/tagatose bisphosphate aldolase pgk CDS COG0126 3230698 3231861 - [G] 3-phosphoglycerate kinase epd CDS COG0057 3231883 3232929 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 1605 cds-NP_461987.1 CDS COG1661 3233303 3233728 + [R] Predicted DNA-binding protein with PD1-like DNA-binding cds-NP_461988.1 CDS ROG0240 3233754 3234332 + NA cds-NP_461989.1 CDS COG0619 3234333 3235040 + [P] ABC-type cobalt transport system, permease component cds-NP_461990.1 CDS COG1122 3235028 3235705 + [P] ABC-type cobalt transport system, ATPase component cds-NP_461991.1 CDS COG1118 3235699 3236355 + [P] ABC-type sulfate/molybdate transport systems, ATPase component 1606 tktA CDS COG0021 3236399 3238390 - [G] Transketolase 1607 yggG CDS COG4784 3238666 3239424 + [R] Putative Zn-dependent protease 1608 speB CDS COG0010 3239525 3240445 - [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 1609 cds-NP_461995.3 CDS COG0596 3240650 3241606 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1610 cds-NP_461996.1 CDS COG2731 3241820 3242293 - [G] Beta-galactosidase, beta subunit cds-NP_461997.1 CDS COG2055 3242332 3243339 - [C] Malate/L-lactate dehydrogenases cds-NP_461998.1 CDS COG1063 3243353 3244369 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases cds-NP_461999.1 CDS COG0246 3244372 3245844 - [G] Mannitol-1-phosphate/altronate dehydrogenases 1611 cds-NP_462000.3 CDS COG2186 3247104 3247904 - [K] Transcriptional regulators 1612 cds-NP_462001.1 CDS NA 3248058 3248789 - NA 1613 speA CDS COG1166 3248933 3250909 - [E] Arginine decarboxylase (spermidine biosynthesis) yqgB CDS NA 3250918 3251049 - NA 1614 yqgC CDS NA 3251183 3251347 + NA 1615 yqgD CDS NA 3251344 3251643 - NA 1616 metK CDS COG0192 3251699 3252853 + [H] S-adenosylmethionine synthetase 1617 galP CDS COG2814 3253346 3254740 + [G] Arabinose efflux permease 1618 sprT CDS COG3091 3254819 3255316 + [S] Uncharacterized protein conserved in bacteria endA CDS COG2356 3255411 3256118 + [L] Endonuclease I yggJ CDS COG1385 3256147 3256926 + [S] Uncharacterized protein conserved in bacteria gshB CDS COG0189 3256946 3257893 + [HJ] Glutathione synthase/Ribosomal protein S6 modification enzyme 1619 yqgE CDS COG1678 3258109 3258672 + [K] Putative transcriptional regulator yqgF CDS COG0816 3258672 3259088 + [L] Predicted endonuclease involved in recombination (possible 1620 cds-NP_462014.1 CDS COG1414 3259135 3259821 - [K] Transcriptional regulator 1621 yggR CDS COG2805 3259953 3260933 - [NU] Tfp pilus assembly protein, pilus retraction 1622 yggS CDS COG0325 3260951 3261655 + [R] Predicted enzyme with a TIM-barrel fold yggT CDS COG0762 3261674 3262240 + [S] Predicted integral membrane protein yggU CDS COG1872 3262237 3262527 + [S] Uncharacterized conserved protein yggV CDS COG0127 3262535 3263128 + [F] Xanthosine triphosphate pyrophosphatase yggW CDS COG0635 3263121 3264257 + [H] Coproporphyrinogen III oxidase and related Fe-S 1623 yggM CDS NA 3264348 3265355 - NA 1624 ansB CDS COG0252 3265488 3266534 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 1625 yggN CDS ROG7720 3266723 3267442 - NA yggL CDS COG3171 3267492 3267818 - [S] Uncharacterized protein conserved in bacteria yggH CDS COG0220 3267818 3268537 - [R] Predicted S-adenosylmethionine-dependent methyltransferase 1626 mutY CDS COG1194 3268692 3269744 + [L] A/G-specific DNA glycosylase yggX CDS COG2924 3269772 3270047 + [CO] Fe-S cluster protector protein 1627 mltC CDS COG0741 3270160 3271245 + [M] Soluble lytic murein transglycosylase and related 1628 nupG CDS NA 3271462 3272718 + NA 1629 speC CDS COG1982 3272780 3274915 - [E] Arginine/lysine/ornithine decarboxylases 1630 yqgA CDS COG1811 3275340 3276047 + [R] Uncharacterized membrane protein, possible Na+ channel 1631 pheV tRNA NA 3276153 3276225 + NA 1632 cds-NP_462032.1 CDS COG0346 3276387 3276821 - [E] Lactoylglutathione lyase and related lyases cds-NP_462033.1 CDS COG0427 3276832 3278157 - [C] Acetyl-CoA hydrolase cds-NP_462034.1 CDS COG2030 3278182 3278709 - [I] Acyl dehydratase cds-NP_462035.1 CDS COG2301 3278733 3279575 - [G] Citrate lyase beta subunit 1633 cds-NP_462036.1 CDS COG0583 3279667 3280545 + [K] Transcriptional regulator 1634 cds-NP_462037.1 CDS COG3119 3280593 3282332 - [P] Arylsulfatase A and related enzymes cds-NP_462038.1 CDS COG0641 3282401 3283585 - [R] Arylsulfatase regulator (Fe-S oxidoreductase) 1635 cds-NP_462039.1 CDS COG2771 3284097 3284780 + [K] DNA-binding HTH domain-containing proteins 1636 cds-NP_462040.1 CDS NA 3284884 3285441 - NA cds-NP_462041.1 CDS COG0531 3285419 3286918 - [E] Amino acid transporters 1637 cds-NP_462042.1 CDS COG3450 3287127 3287501 - [R] Predicted enzyme of the cupin superfamily cds-NP_462043.1 CDS COG0665 3287516 3288817 - [E] Glycine/D-amino acid oxidases (deaminating) 1638 cds-NP_462044.1 CDS COG1012 3288979 3290463 + [C] NAD-dependent aldehyde dehydrogenases 1639 cds-NP_462045.1 CDS COG3518 3290599 3290979 - [S] Uncharacterized protein conserved in bacteria cds-NP_462046.1 CDS COG3157 3290979 3291464 - [S] Hemolysin-coregulated protein (uncharacterized) 1640 cds-NP_462047.1 CDS COG0726 3292190 3293113 - [G] Predicted xylanase/chitin deacetylase cds-NP_462048.1 CDS COG0388 3293152 3294030 - [R] Predicted amidohydrolase 1641 cds-NP_462049.1 CDS COG2271 3294426 3295730 - [G] Sugar phosphate permease 1642 cds-NP_462050.1 CDS COG1312 3296135 3297319 + [G] D-mannonate dehydratase cds-NP_462051.1 CDS COG0246 3297430 3298902 + [G] Mannitol-1-phosphate/altronate dehydrogenases cds-NP_462052.1 CDS COG1904 3298914 3300326 + [G] Glucuronate isomerase 1643 cds-NP_462053.1 CDS COG0840 3300626 3301684 - [NT] Methyl-accepting chemotaxis protein 1644 gsp CDS COG0754 3302354 3304210 - [E] Glutathionylspermidine synthase 1645 yghU CDS COG0625 3304437 3305303 + [O] Glutathione S-transferase 1646 cds-NP_462056.1 CDS COG0725 3305371 3306081 - [P] ABC-type molybdate transport system, periplasmic component cds-NP_462057.1 CDS COG0614 3306081 3307133 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component 1647 hybG CDS COG0298 3307209 3307457 - [O] Hydrogenase maturation factor hybF CDS COG0375 3307485 3307826 - [R] Zn finger protein HypA/HybF (possibly regulating hybE CDS ROG0539 3307819 3308307 - NA hybD CDS COG0680 3308300 3308794 - [C] Ni,Fe-hydrogenase maturation factor hybC CDS COG0374 3308794 3310497 - [C] Ni,Fe-hydrogenase I large subunit hybB CDS COG5557 3310494 3311672 - [C] Polysulphide reductase hybA CDS COG0437 3311662 3312648 - [C] Fe-S-cluster-containing hydrogenase components 1 hypO CDS COG1740 3312651 3313769 - [C] Ni,Fe-hydrogenase I small subunit 1648 yghW CDS NA 3313959 3314246 - NA 1649 cds-NP_462067.1 CDS COG0840 3314331 3315974 - [NT] Methyl-accepting chemotaxis protein 1650 yqhA CDS COG2862 3316281 3316775 - [S] Predicted membrane protein 1651 cds-NP_462069.1 CDS NA 3317055 3317570 - NA 1652 cds-NP_462070.1 CDS NA 3317662 3318072 + NA cds-NP_462071.1 CDS NA 3318059 3318463 + NA 1653 yghA CDS COG1028 3318587 3319471 + [IQR] Dehydrogenases with different specificities (related to 1654 exbD CDS COG0848 3319584 3320009 - [U] Biopolymer transport protein exbB CDS COG0811 3320016 3320750 - [U] Biopolymer transport proteins cds-NP_462075.1 CDS NA 3320743 3320892 - NA 1655 metC CDS COG0626 3321002 3322189 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases 1656 yghB CDS COG0586 3322329 3322988 + [S] Uncharacterized membrane-associated protein 1657 yqhC CDS COG2207 3323052 3323969 - [K] AraC-type DNA-binding domain-containing proteins 1658 yqhD CDS COG1979 3324144 3325307 + [C] Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family yqhE CDS COG0656 3325413 3326240 + [R] Aldo/keto reductases, related to diketogulonate reductase 1659 cds-NP_462081.3 CDS COG0471 3326406 3327890 + [P] Di- and tricarboxylate transporters cds-NP_462082.1 CDS COG0537 3327935 3328390 + [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other 1660 ygiR CDS COG1032 3328945 3331116 - [C] Fe-S oxidoreductase 1661 cds-NP_462084.1 CDS COG1638 3331604 3332587 + [G] TRAP-type C4-dicarboxylate transport system, periplasmic component cds-NP_462085.1 CDS COG3090 3332629 3333111 + [G] TRAP-type C4-dicarboxylate transport system, small permease ygiK CDS COG1593 3333122 3334429 + [G] TRAP-type C4-dicarboxylate transport system, large permease 1662 sufI CDS COG2132 3334474 3335886 - [Q] Putative multicopper oxidases plsC CDS COG0204 3335960 3336697 - [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 1663 parC CDS COG0188 3336954 3339212 - [L] Type IIA topoisomerase (DNA gyrase/topo II, cds-NP_462090.1 CDS COG3449 3339323 3340189 - [L] DNA gyrase inhibitor ygiW CDS COG3111 3340261 3340653 - [S] Uncharacterized conserved protein 1664 ygiX CDS COG0745 3340805 3341464 + [TK] Response regulators consisting of a CheY-like ygiY CDS COG0642 3341461 3342810 + [T] Signal transduction histidine kinase mdaB CDS COG2249 3342917 3343498 + [R] Putative NADPH-quinone reductase (modulator of drug ygiN CDS COG1359 3343530 3343844 + [S] Uncharacterized conserved protein 1665 parE CDS COG0187 3343969 3345861 - [L] Type IIA topoisomerase (DNA gyrase/topo II, yqiA CDS COG3150 3345889 3346470 - [R] Predicted esterase icc CDS COG1409 3346470 3347297 - [R] Predicted phosphohydrolases yqiB CDS COG3151 3347322 3347744 - [S] Uncharacterized protein conserved in bacteria yqiE CDS COG0494 3347741 3348373 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1666 tolC CDS ROG3774 3348574 3350049 + NA 1667 ygiB CDS COG5463 3350262 3350933 + [S] Predicted integral membrane protein ygiC CDS COG0754 3350939 3352102 + [E] Glutathionylspermidine synthase 1668 ygiD CDS COG3384 3352164 3352994 - [S] Uncharacterized conserved protein 1669 ygiE CDS COG0428 3353093 3353866 + [P] Predicted divalent heavy-metal cations transporter 1670 cds-NP_452516.1 CDS ROG2478 3354509 3355474 + NA cds-NP_452517.1 CDS ROG2478 3355510 3356304 + NA cds-NP_462108.1 CDS COG1651 3356324 3356995 + [O] Protein-disulfide isomerase cds-NP_462109.1 CDS COG1495 3357010 3357687 + [O] Disulfide bond formation protein DsbB 1671 ribB CDS COG0108 3357858 3358511 - [H] 3,4-dihydroxy-2-butanone 4-phosphate synthase 1672 yqiC CDS COG2960 3358888 3359247 + [S] Uncharacterized protein conserved in bacteria 1673 glgS CDS NA 3359321 3359530 - NA 1674 cds-NP_462113.1 CDS ROG1415 3359788 3360408 + NA yqiK CDS COG2268 3360427 3362106 + [S] Uncharacterized protein conserved in bacteria 1675 rfaE CDS COG2870 3362566 3363999 - [M] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase glnE CDS COG1391 3364047 3366890 - [OT] Glutamine synthetase adenylyltransferase ygiF CDS COG3025 3367008 3368309 - [S] Uncharacterized conserved protein 1676 ygiM CDS COG3103 3368551 3369165 + [T] SH3 domain protein 1677 cca CDS COG0617 3369228 3370469 + [J] tRNA nucleotidyltransferase/poly(A) polymerase 1678 bacA CDS COG1968 3370574 3371398 - [V] Uncharacterized bacitracin resistance protein folB CDS COG1539 3371493 3371855 - [H] Dihydroneopterin aldolase 1679 ygiH CDS COG0344 3371959 3372570 + [S] Predicted membrane protein 1680 gcp CDS COG0533 3372821 3373834 - [O] Metal-dependent proteases with possible chaperone activity 1681 rpsU CDS COG0828 3374062 3374277 + [J] Ribosomal protein S21 dnaG CDS COG0358 3374513 3376258 + [L] DNA primase (bacterial type) rpoD CDS COG0568 3376273 3378255 + [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1682 mug CDS COG3663 3378379 3378885 - [L] G:T/U mismatch-specific DNA glycosylase 1683 ileX tRNA NA 3379011 3379083 + NA 1684 yqjH CDS COG2375 3379166 3379933 - [P] Siderophore-interacting protein 1685 yqjI CDS COG1695 3380165 3380812 + [K] Predicted transcriptional regulators 1686 cds-NP_462130.1 CDS COG0840 3380809 3382374 - [NT] Methyl-accepting chemotaxis protein aer CDS COG0840 3382762 3384282 - [NT] Methyl-accepting chemotaxis protein 1687 oat CDS COG4992 3384802 3386091 + [E] Ornithine/acetylornithine aminotransferase 1688 fadH CDS COG1902 3386262 3388280 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family 1689 ygjO CDS COG2813 3388361 3389497 - [J] 16S RNA G1207 methylase RsmC 1690 ygjP CDS COG1451 3389583 3390080 + [R] Predicted metal-dependent hydrolase 1691 ygjQ CDS COG2949 3390232 3390924 + [S] Uncharacterized membrane protein 1692 ygjR CDS COG0673 3391013 3392011 + [R] Predicted dehydrogenases and related proteins 1693 ygjT CDS COG0861 3392284 3393252 + [P] Membrane protein TerC, possibly involved in 1694 ygjU CDS COG3633 3393507 3394751 + [E] Na+/serine symporter 1695 yqjA CDS COG0586 3395201 3395863 + [S] Uncharacterized membrane-associated protein yqjB CDS NA 3395867 3396250 + NA 1696 yqjC CDS ROG4156 3396395 3396763 + NA yqjD CDS COG4575 3396805 3397110 + [S] Uncharacterized conserved protein yqjE CDS COG5393 3397113 3397511 + [S] Predicted membrane protein yqjK CDS NA 3397508 3397807 + NA 1697 yqjF CDS COG2259 3397952 3398437 + [S] Predicted membrane protein yqjG CDS COG0435 3398505 3399491 + [O] Predicted glutathione S-transferase 1698 yhaH CDS COG3152 3399615 3399980 + [S] Predicted membrane protein 1699 yhaJ CDS COG0583 3400019 3400915 - [K] Transcriptional regulator 1700 yhaK CDS COG1741 3401020 3401721 + [R] Pirin-related protein yhaL CDS COG1722 3401745 3401909 + [L] Exonuclease VII small subunit 1701 yhaN CDS COG3681 3402022 3403332 - [S] Uncharacterized conserved protein yhaO CDS COG0814 3403358 3404689 - [E] Amino acid permeases 1702 tdcG CDS COG1760 3405005 3406369 - [E] L-serine deaminase tdcE CDS COG1882 3406439 3408733 - [C] Pyruvate-formate lyase tdcD CDS COG0282 3408767 3409975 - [C] Acetate kinase tdcC CDS COG0814 3410041 3411372 - [E] Amino acid permeases tdcB CDS COG1171 3411393 3412382 - [E] Threonine dehydratase tdcA CDS COG0583 3412480 3413418 - [K] Transcriptional regulator 1703 garK CDS COG1929 3415217 3416362 - [G] Glycerate kinase garR CDS COG2084 3416460 3417350 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases garL CDS COG3836 3417376 3418146 - [G] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1704 garD CDS COG2721 3418676 3420247 + [G] Altronate dehydratase 1705 cds-NP_462164.1 CDS COG0524 3420487 3421434 - [G] Sugar kinases, ribokinase family agaR CDS COG1349 3421445 3422278 - [KG] Transcriptional regulators of sugar metabolism 1706 cds-NP_462166.1 CDS COG0191 3422612 3423466 + [G] Fructose/tagatose bisphosphate aldolase cds-NP_462167.1 CDS COG1105 3423477 3424391 + [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase cds-NP_462168.1 CDS COG1299 3424418 3425845 + [G] Phosphotransferase system, fructose-specific IIC component cds-NP_462169.1 CDS COG4668 3425832 3426638 + [G] Mannitol/fructose-specific phosphotransferase system, IIA domain 1707 cds-NP_462170.1 CDS COG4573 3426836 3428107 + [G] Predicted tagatose 6-phosphate kinase cds-NP_462171.1 CDS COG1762 3428122 3428586 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) cds-NP_462172.1 CDS COG3414 3428617 3428901 + [G] Phosphotransferase system, galactitol-specific IIB component cds-NP_462173.1 CDS COG3775 3428905 3430278 + [G] Phosphotransferase system, galactitol-specific IIC component cds-NP_462174.1 CDS COG1063 3430322 3431365 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases cds-NP_462175.1 CDS COG1349 3431476 3432249 + [KG] Transcriptional regulators of sugar metabolism 1708 yraL CDS COG0313 3432407 3433270 - [R] Predicted methyltransferases 1709 yraM CDS COG3107 3433334 3435376 + [R] Putative lipoprotein yraN CDS COG0792 3435334 3435729 + [L] Predicted endonuclease distantly related to archaeal yraO CDS COG0279 3435751 3436341 + [G] Phosphoheptose isomerase yraP CDS COG2823 3436351 3436926 + [R] Predicted periplasmic or secreted lipoprotein 1710 yraR CDS COG0702 3436993 3437661 - [MG] Predicted nucleoside-diphosphate-sugar epimerases 1711 yhbO CDS COG0693 3437759 3438277 + [R] Putative intracellular protease/amidase 1712 yhbP CDS COG3787 3438257 3438700 - [S] Uncharacterized protein conserved in bacteria 1713 yhbQ CDS COG2827 3438738 3439055 + [L] Predicted endonuclease containing a URI domain 1714 yhbS CDS COG3153 3439042 3439545 - [R] Predicted acetyltransferase yhbT CDS COG3154 3439539 3440063 - [I] Putative lipid carrier protein 1715 yhbU CDS COG0826 3440280 3441275 + [O] Collagenase and related proteases yhbV CDS NA 3441266 3442162 + NA 1716 yhbW CDS COG2141 3442340 3443347 + [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 1717 cds-NP_462190.1 CDS COG3034 3443325 3444044 - [S] Uncharacterized protein conserved in bacteria 1718 cds-NP_462191.1 CDS NA 3444203 3444733 + NA 1719 mtr CDS COG0814 3444794 3446038 - [E] Amino acid permeases 1720 deaD CDS COG0513 3446192 3448132 - [LKJ] Superfamily II DNA and RNA helicases 1721 nlpI CDS COG4785 3448260 3449144 - [R] Lipoprotein NlpI, contains TPR repeats pnp CDS COG1185 3449254 3451389 - [J] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) rpsO CDS COG0184 3451631 3451900 - [J] Ribosomal protein S15P/S13E truB CDS COG0130 3452051 3452995 - [J] Pseudouridine synthase rbfA CDS COG0858 3452995 3453396 - [J] Ribosome-binding factor A infB CDS COG0532 3453617 3456295 - [J] Translation initiation factor 2 (IF-2; GTPase) nusA CDS COG0195 3456320 3457822 - [K] Transcription elongation factor yhbC CDS COG0779 3457850 3458272 - [S] Uncharacterized protein conserved in bacteria 1722 metY tRNA NA 3458513 3458586 - NA 1723 argG CDS COG0137 3458864 3460273 + [E] Argininosuccinate synthase 1724 cds-NP_462203.1 CDS COG3878 3460359 3461423 - [S] Uncharacterized protein conserved in bacteria 1725 leuU tRNA NA 3461762 3461845 - NA secG CDS COG1314 3461859 3462191 - [U] Preprotein translocase subunit SecG 1726 mrsA CDS COG1109 3462414 3463751 - [G] Phosphomannomutase folP CDS COG0294 3463744 3464592 - [H] Dihydropteroate synthase and related enzymes hflB CDS COG0465 3464697 3466631 - [O] ATP-dependent Zn proteases ftsJ CDS COG0293 3466735 3467361 - [J] 23S rRNA methylase 1727 yhbY CDS COG1534 3467449 3467781 + [J] Predicted RNA-binding protein containing KH domain, 1728 greA CDS COG0782 3467937 3468413 - [K] Transcription elongation factor 1729 dacB CDS COG2027 3468661 3470094 + [M] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 1730 yhbZ CDS COG0536 3470226 3471398 - [R] Predicted GTPase 1731 rpmA CDS COG0211 3472508 3472765 - [J] Ribosomal protein L27 rplU CDS COG0261 3472785 3473096 - [J] Ribosomal protein L21 1732 ispB CDS COG0142 3473354 3474325 + [H] Geranylgeranyl pyrophosphate synthase 1733 nlp CDS COG3423 3474557 3474844 + [K] Predicted transcriptional regulator 1734 murA CDS COG0766 3474902 3476161 - [M] UDP-N-acetylglucosamine enolpyruvyl transferase yrbA CDS COG5007 3476215 3476508 - [K] Predicted transcriptional regulator, BolA superfamily yrbB CDS COG3113 3476657 3476953 - [R] Predicted NTP binding protein (contains STAS yrbC CDS COG2854 3476953 3477588 - [Q] ABC-type transport system involved in resistance yrbD CDS COG1463 3477607 3478158 - [Q] ABC-type transport system involved in resistance yrbE CDS COG0767 3478163 3478945 - [Q] ABC-type transport system involved in resistance yrbF CDS COG1127 3478953 3479765 - [Q] ABC-type transport system involved in resistance 1735 yrbG CDS COG0530 3479978 3480955 + [P] Ca2+/Na+ antiporter yrbH CDS COG0794 3480969 3481955 + [M] Predicted sugar phosphate isomerase involved in yrbI CDS COG1778 3481976 3482542 + [R] Low specificity phosphatase (HAD superfamily) yrbK CDS COG3117 3482539 3483114 + [S] Uncharacterized protein conserved in bacteria yhbN CDS COG1934 3483083 3483637 + [S] Uncharacterized protein conserved in bacteria yhbG CDS COG1137 3483644 3484369 + [R] ABC-type (unclassified) transport system, ATPase component rpoN CDS COG1508 3484417 3485850 + [K] DNA-directed RNA polymerase specialized sigma subunit, yhbH CDS COG1544 3485873 3486160 + [J] Ribosome-associated protein Y (PSrp-1) ptsN CDS COG1762 3486278 3486769 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) yhbJ CDS COG1660 3486815 3487669 + [R] Predicted P-loop-containing kinase ptsO CDS COG1925 3487666 3487938 + [G] Phosphotransferase system, HPr-related proteins 1736 yrbL CDS ROG3489 3488187 3488819 + NA 1737 mtgA CDS COG0744 3488894 3489622 - [M] Membrane carboxypeptidase (penicillin-binding protein) yhbL CDS COG3155 3489619 3490272 - [Q] Uncharacterized protein involved in an early 1738 arcB CDS COG0642 3490499 3492835 - [T] Signal transduction histidine kinase 1739 yhcC CDS COG1242 3492929 3493858 - [R] Predicted Fe-S oxidoreductase 1740 gltB CDS COG0069 3494530 3498990 + [E] Glutamate synthase domain 2 gltD CDS COG0493 3499000 3500418 + [ER] NADPH-dependent glutamate synthase beta chain and 1741 yhcG CDS COG4804 3500625 3501728 + [S] Uncharacterized conserved protein 1742 cds-NP_462243.1 CDS COG1457 3501845 3503098 + [F] Purine-cytosine permease and related proteins cds-NP_462244.1 CDS COG0402 3503085 3504365 + [FR] Cytosine deaminase and related metal-dependent hydrolases 1743 yhcH CDS COG2731 3504448 3504915 - [G] Beta-galactosidase, beta subunit nanK CDS COG1940 3504912 3505787 - [KG] Transcriptional regulator/sugar kinase nanE CDS COG3010 3505784 3506473 - [G] Putative N-acetylmannosamine-6-phosphate epimerase nanT CDS COG0477 3506520 3508010 - [GEPR] Permeases of the major facilitator superfamily nanA CDS COG0329 3508126 3509019 - [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase yhcK CDS COG2186 3509154 3509945 - [K] Transcriptional regulators 1744 sspB CDS COG2969 3510054 3510554 - [R] Stringent starvation protein B sspA CDS ROG1850 3510560 3511198 - NA 1745 cds-NP_462253.1 CDS ROG5141 3511461 3512213 - NA 1746 rpsI CDS COG0103 3512413 3512805 - [J] Ribosomal protein S9 rplM CDS COG0102 3512821 3513249 - [J] Ribosomal protein L13 1747 yhcM CDS COG1485 3513552 3514676 - [R] Predicted ATPase 1748 yhcB CDS COG3105 3514863 3515267 + [S] Uncharacterized protein conserved in bacteria 1749 degQ CDS COG0265 3515424 3516791 + [O] Trypsin-like serine proteases, typically periplasmic, contain degS CDS COG0265 3516884 3517954 + [O] Trypsin-like serine proteases, typically periplasmic, contain 1750 cds-NP_462260.1 CDS COG1767 3517988 3518719 - [H] Triphosphoribosyl-dephospho-CoA synthetase oadB CDS COG1883 3518739 3520040 - [C] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit oadA CDS COG5016 3520053 3521828 - [C] Pyruvate/oxaloacetate carboxyltransferase oadG CDS COG3630 3521844 3522098 - [C] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit cds-NP_462264.1 CDS COG1838 3522254 3522871 - [C] Tartrate dehydratase beta subunit/Fumarate hydratase class cds-NP_462265.1 CDS COG1951 3522871 3523770 - [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class cds-NP_462266.1 CDS COG0471 3523803 3525071 - [P] Di- and tricarboxylate transporters 1751 cds-NP_462267.1 CDS COG1802 3525282 3525947 - [K] Transcriptional regulators cds-NP_462268.1 CDS COG1802 3525934 3526563 - [K] Transcriptional regulators 1752 mdh CDS COG0039 3526683 3527621 - [C] Malate/lactate dehydrogenases 1753 argR CDS COG1438 3528035 3528505 + [K] Arginine repressor 1754 yhcN CDS NA 3528870 3529133 + NA 1755 cds-NP_462272.1 CDS NA 3529237 3529503 + NA 1756 yhcO CDS COG2732 3529563 3529835 - [K] Barstar, RNAse (barnase) inhibitor 1757 yhcP CDS COG1289 3530007 3531974 - [S] Predicted membrane protein yhcQ CDS COG1566 3531980 3532912 - [V] Multidrug resistance efflux pump yhcR CDS ROG4895 3532920 3533123 - NA 1758 yhcS CDS COG0583 3533305 3534234 + [K] Transcriptional regulator 1759 tldD CDS COG0312 3534357 3535802 - [R] Predicted Zn-dependent proteases and their inactivated yhdP CDS COG3164 3535947 3539747 - [S] Predicted membrane protein cafA CDS COG1530 3539854 3541323 - [J] Ribonucleases G and E yhdE CDS COG0424 3541313 3541906 - [D] Nucleotide-binding protein implicated in inhibition of mreD CDS COG2891 3541915 3542406 - [M] Cell shape-determining protein mreC CDS COG1792 3542406 3543458 - [M] Cell shape-determining protein mreB CDS COG1077 3543523 3544566 - [D] Actin-like ATPase involved in cell morphogenesis 1760 yhdA CDS COG2199 3544874 3546814 - [T] FOG: GGDEF domain 1761 yhdH CDS COG0604 3547018 3547992 + [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 1762 cds-NP_462287.1 CDS COG2041 3548105 3549109 + [R] Sulfite oxidase and related enzymes cds-NP_462288.1 CDS COG2717 3549110 3549709 + [S] Predicted membrane protein 1763 accB CDS COG0511 3550102 3550572 + [I] Biotin carboxyl carrier protein accC CDS COG0439 3550583 3551932 + [I] Biotin carboxylase 1764 yhdT CDS COG3924 3552041 3552283 + [S] Predicted membrane protein panF CDS COG4145 3552273 3553724 + [H] Na+/panthothenate symporter prmA CDS COG2264 3553736 3554617 + [J] Ribosomal protein L11 methylase 1765 yhdG CDS COG0042 3555278 3556243 + [J] tRNA-dihydrouridine synthase fis CDS COG2901 3556269 3556565 + [KL] Factor for inversion stimulation Fis, transcriptional 1766 yhdJ CDS COG0863 3556651 3557535 + [L] DNA modification methylase 1767 yhdU CDS NA 3557618 3557782 + NA 1768 cds-NP_462298.1 CDS COG2200 3557933 3560032 + [T] FOG: EAL domain 1769 envR CDS COG1309 3560035 3560697 - [K] Transcriptional regulator 1770 acrE CDS COG0845 3561111 3562268 + [M] Membrane-fusion protein acrF CDS COG0841 3562280 3565393 + [V] Cation/multidrug efflux pump 1771 yhdV CDS COG5633 3565629 3565850 + [R] Predicted periplasmic lipoprotein 1772 rrfF rRNA NA 3566629 3566750 - NA thrV tRNA NA 3566791 3566863 - NA rrfD rRNA NA 3566874 3566995 - NA rrlD rRNA NA 3567085 3570078 - NA rna-STM3397 tRNA NA 3570314 3570386 - NA rrsD rRNA NA 3570470 3572013 - NA 1773 yrdA CDS COG0663 3572489 3573043 + [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 1774 yrdB CDS NA 3573019 3573276 - NA aroE CDS COG0169 3573273 3574091 - [E] Shikimate 5-dehydrogenase yrdC CDS COG0068 3574096 3574668 - [O] Hydrogenase maturation factor yrdD CDS COG0551 3574673 3575215 - [L] Zn-finger domain associated with topoisomerase type smg CDS COG2922 3575242 3575715 - [S] Uncharacterized protein conserved in bacteria smf CDS COG0758 3575687 3576811 - [LU] Predicted Rossmann fold nucleotide-binding protein involved 1775 def CDS COG0242 3576943 3577452 + [J] N-formylmethionyl-tRNA deformylase fmt CDS COG0223 3577468 3578415 + [J] Methionyl-tRNA formyltransferase sun CDS COG0144 3578467 3579756 + [J] tRNA and rRNA cytosine-C5-methylases trkA CDS COG0569 3579778 3581154 + [P] K+ transport systems, NAD-binding component 1776 mscL CDS COG1970 3581296 3581709 + [M] Large-conductance mechanosensitive channel 1777 cds-NP_462315.1 CDS COG3036 3581645 3581914 - [S] Uncharacterized protein conserved in bacteria zntR CDS COG0789 3581972 3582397 - [K] Predicted transcriptional regulators yhdN CDS ROG0120 3582408 3582776 - NA 1778 rplQ CDS COG0203 3582884 3583267 - [J] Ribosomal protein L17 rpoA CDS COG0202 3583308 3584297 - [K] DNA-directed RNA polymerase, alpha subunit/40 kD rpsD CDS COG0522 3584323 3584943 - [J] Ribosomal protein S4 and related proteins rpsK CDS COG0100 3584977 3585366 - [J] Ribosomal protein S11 rpsM CDS COG0099 3585383 3585739 - [J] Ribosomal protein S13 rpmJ CDS COG0257 3585886 3586002 - [J] Ribosomal protein L36 secY CDS COG0201 3586034 3587365 - [U] Preprotein translocase subunit SecY rplO CDS COG0200 3587373 3587807 - [J] Ribosomal protein L15 rpmD CDS COG1841 3587811 3587990 - [J] Ribosomal protein L30/L7E rpsE CDS COG0098 3587994 3588497 - [J] Ribosomal protein S5 rplR CDS COG0256 3588512 3588865 - [J] Ribosomal protein L18 rplF CDS COG0097 3588875 3589408 - [J] Ribosomal protein L6P/L9E rpsH CDS COG0096 3589421 3589813 - [J] Ribosomal protein S8 rpsN CDS COG0199 3589847 3590152 - [J] Ribosomal protein S14 rplE CDS COG0094 3590167 3590706 - [J] Ribosomal protein L5 rplX CDS COG0198 3590721 3591035 - [J] Ribosomal protein L24 rplN CDS COG0093 3591046 3591417 - [J] Ribosomal protein L14 rpsQ CDS COG0186 3591581 3591835 - [J] Ribosomal protein S17 rpmC CDS COG0255 3591835 3592026 - [J] Ribosomal protein L29 rplP CDS COG0197 3592026 3592436 - [J] Ribosomal protein L16/L10E rpsC CDS COG0092 3592449 3593150 - [J] Ribosomal protein S3 rplV CDS COG0091 3593168 3593500 - [J] Ribosomal protein L22 rpsS CDS COG0185 3593515 3593793 - [J] Ribosomal protein S19 rplB CDS COG0090 3593810 3594631 - [J] Ribosomal protein L2 rplW CDS COG0089 3594649 3594951 - [J] Ribosomal protein L23 rplD CDS COG0088 3594948 3595553 - [J] Ribosomal protein L4 rplC CDS COG0087 3595564 3596193 - [J] Ribosomal protein L3 rpsJ CDS COG0051 3596226 3596537 - [J] Ribosomal protein S10 1779 hopD CDS COG1989 3596917 3597384 + [NOU] Type II secretory pathway, prepilin signal 1780 bfr CDS COG2193 3597381 3597857 - [P] Bacterioferritin (cytochrome b1) bfd CDS COG2906 3597930 3598124 - [P] Bacterioferritin-associated ferredoxin 1781 tufA CDS COG0050 3598309 3599493 - [J] GTPases - translation elongation factors fusA CDS COG0480 3599565 3601679 - [J] Translation elongation factors (GTPases) rpsG CDS COG0049 3601776 3602246 - [J] Ribosomal protein S7 rpsL CDS COG0048 3602342 3602716 - [J] Ribosomal protein S12 1782 yheL CDS COG2168 3602842 3603129 - [P] Uncharacterized conserved protein involved in oxidation yheM CDS COG2923 3603137 3603493 - [P] Uncharacterized protein involved in the oxidation yheN CDS COG1553 3603493 3603879 - [P] Uncharacterized conserved protein involved in intracellular yheO CDS COG2964 3603879 3604601 - [S] Uncharacterized protein conserved in bacteria 1783 fkpA CDS COG0545 3604878 3605696 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 1 1784 slyX CDS COG2900 3605916 3606134 + [S] Uncharacterized protein conserved in bacteria 1785 slyD CDS COG1047 3606322 3606912 - [O] FKBP-type peptidyl-prolyl cis-trans isomerases 2 1786 yheV CDS COG3529 3607007 3607207 - [R] Predicted nucleic-acid-binding protein containing a Zn-ribbon kefB CDS COG0475 3607218 3609023 - [P] Kef-type K+ transport systems, membrane components yheR CDS COG2249 3609023 3609574 - [R] Putative NADPH-quinone reductase (modulator of drug 1787 yheS CDS COG0488 3609840 3611747 + [R] ATPase components of ABC transporters with 1788 cds-NP_462364.1 CDS ROG2175 3612133 3612444 - NA 1789 yheT CDS COG0429 3612642 3613709 + [R] Predicted hydrolase of the alpha/beta-hydrolase fold yheU CDS COG3089 3613706 3613924 + [S] Uncharacterized protein conserved in bacteria prkB CDS COG3954 3613976 3614845 + [C] Phosphoribulokinase 1790 yhfA CDS COG1765 3614941 3615345 - [O] Predicted redox protein, regulator of disulfide 1791 crp CDS COG0664 3615653 3616285 + [T] cAMP-binding proteins - catabolite gene activator yhfK CDS COG1289 3616334 3618421 + [S] Predicted membrane protein 1792 argD CDS COG4992 3618464 3619681 - [E] Ornithine/acetylornithine aminotransferase pabA CDS COG0512 3619767 3620330 - [EH] Anthranilate/para-aminobenzoate synthases component II fic CDS COG2184 3620362 3620964 - [D] Protein involved in cell division yhfG CDS NA 3620954 3621121 - NA 1793 ppiA CDS COG0652 3621230 3621802 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 1794 yhfC CDS NA 3622079 3623260 + NA 1795 nirB CDS COG1251 3623523 3626066 + [C] NAD(P)H-nitrite reductase nirD CDS COG2146 3626063 3626389 + [PR] Ferredoxin subunits of nitrite reductase and nirC CDS COG2116 3626655 3627464 + [P] Formate/nitrite family of transporters cysG CDS COG0007 3627476 3628849 + [H] Uroporphyrinogen-III methylase 1796 bigA CDS COG4625 3629175 3635036 + [S] Uncharacterized protein with a C-terminal OMP 1797 tnpA_5 CDS COG1943 3635168 3635626 - [L] Transposase and inactivated derivatives 1798 yhfL CDS COG4724 3635940 3636110 + [G] Endo-beta-N-acetylglucosaminidase D 1799 trpS CDS COG0180 3636255 3637259 - [J] Tryptophanyl-tRNA synthetase gph CDS COG0546 3637252 3638010 - [R] Predicted phosphatases rpe CDS COG0036 3638003 3638680 - [G] Pentose-5-phosphate-3-epimerase dam CDS COG0338 3638698 3639534 - [L] Site-specific DNA methylase 1800 damX CDS COG3266 3639715 3640992 - [S] Uncharacterized protein conserved in bacteria aroB CDS COG0337 3641090 3642178 - [E] 3-dehydroquinate synthetase aroK CDS COG0703 3642235 3642756 - [E] Shikimate kinase 1801 hofQ CDS COG4796 3643221 3644459 - [U] Type II secretory pathway, component HofQ yrfA CDS NA 3644374 3644775 - NA yrfB CDS NA 3644765 3645238 - NA yrfC CDS COG3166 3645222 3645761 - [NU] Tfp pilus assembly protein PilN yrfD CDS NA 3645761 3646540 - NA 1802 mrcA CDS COG5009 3646637 3649213 + [M] Membrane carboxypeptidase/penicillin-binding protein 1803 yrfE CDS COG0494 3649309 3649905 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1804 yrfF CDS NA 3650195 3652327 + NA 1805 yrfG CDS COG1011 3652392 3653060 + [R] Predicted hydrolase (HAD superfamily) yrfH CDS COG1188 3653071 3653472 + [J] Ribosome-associated heat shock protein implicated in yrfI CDS COG1281 3653491 3654375 + [O] Disulfide bond chaperones of the HSP33 1806 yhgE CDS ROG0893 3654485 3656194 - NA 1807 pckA CDS COG1866 3656574 3658193 + [C] Phosphoenolpyruvate carboxykinase (ATP) 1808 envZ CDS COG2205 3658268 3659620 - [T] Osmosensitive K+ channel histidine kinase ompR CDS COG0745 3659617 3660336 - [TK] Response regulators consisting of a CheY-like 1809 greB CDS COG0782 3660562 3661035 + [K] Transcription elongation factor yhgF CDS COG2183 3661137 3663464 + [K] Transcriptional accessory protein 1810 feoA CDS COG1918 3663901 3664128 + [P] Fe2+ transport system protein A feoB CDS COG0370 3664147 3666465 + [P] Fe2+ transport system protein B yhgG CDS ROG1872 3666478 3666714 + NA 1811 cds-NP_462411.1 CDS COG5464 3666949 3667863 + [S] Uncharacterized conserved protein 1812 bioH CDS COG0596 3667899 3668669 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1813 yhgH CDS COG1040 3668707 3669390 + [R] Predicted amidophosphoribosyltransferases yhgI CDS COG0694 3669449 3670024 + [O] Thioredoxin-like proteins and domains 1814 gntT CDS COG2610 3670401 3671717 + [GE] H+/gluconate symporter and related permeases 1815 malQ CDS COG1640 3671836 3673914 - [G] 4-alpha-glucanotransferase malP CDS COG0058 3673924 3676317 - [G] Glucan phosphorylase 1816 malT CDS COG2909 3676911 3679616 + [K] ATP-dependent transcriptional regulator 1817 cds-NP_462419.1 CDS COG3041 3679704 3679979 - [S] Uncharacterized protein conserved in bacteria cds-NP_462420.1 CDS COG3077 3679982 3680242 - [L] DNA-damage-inducible protein J 1818 rtcA CDS COG0430 3680351 3681370 - [A] RNA 3'-terminal phosphate cyclase rtcB CDS COG1690 3681374 3682591 - [S] Uncharacterized conserved protein 1819 cds-NP_462423.1 CDS ROG1358 3683136 3684689 - NA 1820 rtcR CDS COG4650 3684879 3686462 + [KT] Sigma54-dependent transcription regulator containing an AAA-type 1821 glpR CDS COG1349 3686459 3687217 - [KG] Transcriptional regulators of sugar metabolism glpG CDS COG0705 3687311 3688141 - [R] Uncharacterized membrane protein (homolog of Drosophila glpE CDS COG0607 3688217 3688543 - [P] Rhodanese-related sulfurtransferase 1822 glpD CDS COG0578 3688742 3690250 + [C] Glycerol-3-phosphate dehydrogenase 1823 cds-NP_462429.1 CDS NA 3690297 3690842 - NA cds-NP_462430.1 CDS COG0226 3690852 3692411 - [P] ABC-type phosphate transport system, periplasmic component cds-NP_462431.1 CDS COG0371 3692505 3693614 - [C] Glycerol dehydrogenase and related enzymes 1824 cds-NP_462432.1 CDS COG0129 3695283 3696998 + [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase cds-NP_462433.1 CDS COG0329 3697042 3697947 + [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 1825 cds-NP_462434.1 CDS COG1414 3697991 3698746 - [K] Transcriptional regulator 1826 glgP CDS COG0058 3698924 3701371 - [G] Glucan phosphorylase glgA CDS COG0297 3701391 3702824 - [G] Glycogen synthase glgC CDS COG0448 3702824 3704119 - [G] ADP-glucose pyrophosphorylase glgX CDS COG1523 3704134 3706110 - [G] Type II secretory pathway, pullulanase PulA glgB CDS COG0296 3706107 3708293 - [G] 1,4-alpha-glucan branching enzyme asd CDS COG0136 3708640 3709746 - [E] Aspartate-semialdehyde dehydrogenase 1827 yhgN CDS NA 3709873 3710253 + NA 1828 gntU CDS COG2610 3710170 3711510 - [GE] H+/gluconate symporter and related permeases gntK CDS COG3265 3711507 3712040 - [G] Gluconate kinase gntR CDS COG1609 3712179 3713174 - [K] Transcriptional regulators 1829 yhhW CDS COG1741 3713304 3713999 - [R] Pirin-related protein 1830 yhhX CDS COG0673 3714123 3715160 - [R] Predicted dehydrogenases and related proteins 1831 yhhY CDS COG0454 3715629 3716117 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1832 cds-NP_462448.3 CDS COG0524 3716382 3717596 + [G] Sugar kinases, ribokinase family cds-NP_462449.1 CDS COG5426 3717612 3718373 + [S] Uncharacterized membrane protein cds-NP_462450.1 CDS COG3238 3718427 3719398 + [S] Uncharacterized protein conserved in bacteria cds-NP_462451.1 CDS COG1735 3719395 3720429 + [R] Predicted metal-dependent hydrolase with the TIM-barrel 1833 ggt CDS COG0405 3720474 3722216 - [E] Gamma-glutamyltransferase 1834 yhhA CDS NA 3722342 3722758 + NA 1835 ugpQ CDS COG0584 3722771 3723511 - [C] Glycerophosphoryl diester phosphodiesterase ugpC CDS COG3839 3723508 3724578 - [G] ABC-type sugar transport systems, ATPase components ugpE CDS COG0395 3724580 3725425 - [G] ABC-type sugar transport system, permease component ugpA CDS COG1175 3725422 3726309 - [G] ABC-type sugar transport systems, permease components ugpB CDS COG1653 3726373 3727689 - [G] ABC-type sugar transport system, periplasmic component 1836 cds-NP_462459.1 CDS COG3654 3727948 3728316 - [R] Prophage maintenance system killer protein yhhV CDS COG2161 3728313 3728540 - [D] Antitoxin of toxin-antitoxin stability system 1837 livF CDS COG0410 3728666 3729379 - [E] ABC-type branched-chain amino acid transport systems, livG CDS COG0411 3729381 3730148 - [E] ABC-type branched-chain amino acid transport systems, livM CDS COG4177 3730145 3731422 - [E] ABC-type branched-chain amino acid transport system, livH CDS COG0559 3731419 3732345 - [E] Branched-chain amino acid ABC-type transport system, livK CDS COG0683 3732405 3733514 - [E] ABC-type branched-chain amino acid transport systems, 1838 yhhK CDS ROG1444 3733936 3734319 + NA cds-NP_462467.1 CDS ROG8179 3734297 3734431 + NA 1839 livJ CDS COG0683 3734514 3735611 - [E] ABC-type branched-chain amino acid transport systems, 1840 rpoH CDS COG0568 3735939 3736793 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 1841 ftsX CDS COG2177 3737039 3738094 - [D] Cell division protein ftsE CDS COG2884 3738087 3738755 - [D] Predicted ATPase involved in cell division ftsY CDS COG0552 3738758 3740233 - [U] Signal recognition particle GTPase 1842 yhhF CDS COG0742 3740359 3740955 + [L] N6-adenine-specific methylase yhhL CDS COG3776 3740942 3741214 + [S] Predicted membrane protein 1843 yhhM CDS ROG6351 3741236 3741607 - NA 1844 yhhN CDS COG3714 3741749 3742375 + [S] Predicted membrane protein 1845 zntA CDS COG2217 3742456 3744654 + [P] Cation transport ATPase 1846 tcp CDS COG0840 3744854 3746497 + [NT] Methyl-accepting chemotaxis protein 1847 yhhP CDS COG0425 3746521 3746766 - [O] Predicted redox protein, regulator of disulfide 1848 yhhQ CDS COG1738 3746936 3747601 + [S] Uncharacterized conserved protein 1849 cds-NP_462481.1 CDS ROG1668 3747674 3748231 + NA 1850 yhhS CDS NA 3748235 3749494 - NA 1851 yhhT CDS COG0628 3749584 3750633 + [R] Predicted permease 1852 acpT CDS COG2091 3750685 3751263 + [H] Phosphopantetheinyl transferase 1853 nikR CDS COG0864 3751355 3751756 + [K] Predicted transcriptional regulators containing the CopG/Arc/MetJ 1854 yhhJ CDS COG0842 3751846 3752970 - [V] ABC-type multidrug transport system, permease component yhiH CDS COG1131 3752970 3755660 - [V] ABC-type multidrug transport system, ATPase component yhiI CDS COG1566 3755708 3756775 - [V] Multidrug resistance efflux pump 1855 yhiN CDS COG2081 3757081 3758277 - [R] Predicted flavoproteins 1856 pitA CDS COG0306 3758508 3760004 + [P] Phosphate/sulphate permeases 1857 uspB CDS NA 3760144 3760479 - NA 1858 uspA CDS COG0589 3760867 3761301 + [T] Universal stress protein UspA and related 1859 yhiP CDS COG3104 3761626 3763095 + [E] Dipeptide/tripeptide permease 1860 yhiQ CDS NA 3763187 3763945 - NA prlC CDS COG0339 3763952 3765994 - [E] Zn-dependent oligopeptidases 1861 cds-NP_462496.1 CDS COG0671 3766176 3767447 - [I] Membrane-associated phospholipid phosphatase 1862 yhiR CDS COG2961 3767658 3768500 + [R] Protein involved in catabolism of external 1863 gor CDS COG1249 3768605 3769957 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 1864 cds-NP_462499.1 CDS COG0252 3770004 3771047 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D cds-NP_462500.1 CDS COG2704 3771106 3772425 - [R] Anaerobic C4-dicarboxylate transporter 1865 cds-NP_462501.1 CDS COG0524 3772479 3773324 - [G] Sugar kinases, ribokinase family cds-NP_462502.1 CDS COG2222 3773388 3774365 - [M] Predicted phosphosugar isomerases cds-NP_462503.1 CDS COG2188 3774541 3775260 - [K] Transcriptional regulators 1866 treF CDS COG1626 3775586 3777235 + [G] Neutral trehalase 1867 cds-NP_462505.1 CDS NA 3777248 3778837 - NA 1868 cds-NP_462506.1 CDS COG3772 3779118 3779474 + [R] Phage-related lysozyme (muraminidase) 1869 yhjB CDS COG2197 3779480 3780082 - [TK] Response regulator containing a CheY-like receiver 1870 yhjC CDS COG0583 3780713 3781612 + [K] Transcriptional regulator 1871 yhjD CDS COG1295 3781685 3782713 + [S] Predicted membrane protein 1872 yhjE CDS COG0477 3783064 3784386 + [GEPR] Permeases of the major facilitator superfamily 1873 yhjG CDS COG2982 3784426 3786486 - [M] Uncharacterized protein involved in outer membrane 1874 yhjH CDS COG2200 3786596 3787363 - [T] FOG: EAL domain 1875 kdgK CDS COG0524 3787592 3788521 + [G] Sugar kinases, ribokinase family 1876 yhjJ CDS COG0612 3788575 3790062 - [R] Predicted Zn-dependent peptidases 1877 dctA CDS COG1301 3790282 3791568 - [C] Na+/H+-dicarboxylate symporters 1878 yhjK CDS COG2200 3791726 3793699 - [T] FOG: EAL domain 1879 yhjL CDS COG0457 3793906 3797448 - [R] FOG: TPR repeat bcsC CDS COG3405 3797430 3798539 - [G] Endoglucanase Y yhjN CDS ROG0761 3798543 3800843 - NA yhjO CDS COG1215 3800854 3803478 - [M] Glycosyltransferases, probably involved in cell wall yhjQ CDS COG0455 3803475 3804227 - [D] ATPases involved in chromosome partitioning yhjR CDS NA 3804228 3804431 - NA 1880 yhjS CDS NA 3804676 3806247 + NA yhjT CDS NA 3806244 3806435 + NA yhjU CDS ROG4317 3806432 3808111 + NA 1881 cds-NP_462526.1 CDS COG0626 3808685 3808825 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases 1882 yhjV CDS COG0814 3808943 3810241 + [E] Amino acid permeases 1883 dppF CDS COG4608 3810342 3811355 - [E] ABC-type oligopeptide transport system, ATPase component dppD CDS COG0444 3811352 3812335 - [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component dppC CDS COG1173 3812346 3813248 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppB CDS COG0601 3813258 3814277 - [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppA CDS COG0747 3814434 3816041 - [E] ABC-type dipeptide transport system, periplasmic component 1884 cds-NP_462533.1 CDS COG2233 3816597 3817922 - [F] Xanthine/uracil permeases cds-NP_462534.1 CDS ROG1135 3817980 3819104 - NA 1885 cds-NP_462535.1 CDS COG1609 3819254 3820261 + [K] Transcriptional regulators 1886 proK tRNA NA 3820424 3820497 - NA 1887 yhjW CDS COG2194 3820588 3822279 - [R] Predicted membrane-associated, metal-dependent hydrolase 1888 lpfE CDS COG3539 3822497 3823024 - [NU] P pilus assembly protein, pilin FimA lpfD CDS COG3539 3823030 3824109 - [NU] P pilus assembly protein, pilin FimA lpfC CDS COG3188 3824127 3826655 - [NU] P pilus assembly protein, porin PapC lpfB CDS COG3121 3826678 3827376 - [NU] P pilus assembly protein, chaperone PapD lpfA CDS COG3539 3827461 3827997 - [NU] P pilus assembly protein, pilin FimA 1889 yhjY CDS COG5571 3828503 3829207 - [N] Autotransporter protein or domain, integral membrane 1890 tag CDS COG2818 3829364 3829945 + [L] 3-methyladenine DNA glycosylase yiaC CDS COG0454 3829923 3830363 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1891 bisC CDS COG0243 3830332 3832665 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 1892 yiaD CDS COG2885 3832818 3833480 + [M] Outer membrane protein and related peptidoglycan-associated 1893 yiaE CDS COG1052 3833699 3834673 + [CHR] Lactate dehydrogenase and related dehydrogenases 1894 yiaF CDS NA 3834723 3835433 - NA 1895 yiaG CDS COG2944 3835872 3836162 + [K] Predicted transcriptional regulator 1896 cspA CDS COG1278 3836451 3836663 + [K] Cold shock proteins 1897 cds-NP_462551.1 CDS ROG4621 3836837 3837376 + NA 1898 cds-NP_462552.1 CDS COG0454 3837748 3838233 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases cds-NP_462553.1 CDS COG4453 3838221 3838508 - [S] Uncharacterized protein conserved in bacteria cds-NP_462554.1 CDS COG0454 3838686 3839153 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1899 glyS CDS COG0751 3839782 3841851 - [J] Glycyl-tRNA synthetase, beta subunit glyQ CDS COG0752 3841861 3842772 - [J] Glycyl-tRNA synthetase, alpha subunit 1900 cds-NP_462557.1 CDS ROG1065 3842911 3843213 - NA 1901 yiaH CDS COG3274 3843379 3844374 + [S] Uncharacterized protein conserved in bacteria 1902 yiaB CDS COG4682 3844397 3844750 - [S] Predicted membrane protein 1903 xylB CDS COG1070 3844925 3846379 - [G] Sugar (pentulose and hexulose) kinases xylA CDS COG2115 3846479 3847801 - [G] Xylose isomerase 1904 xylR CDS COG2207 3848164 3849342 + [K] AraC-type DNA-binding domain-containing proteins 1905 bax CDS COG2992 3849403 3850227 - [R] Uncharacterized FlgJ-related protein 1906 malS CDS COG0366 3850543 3852570 + [G] Glycosidases 1907 avtA CDS COG3977 3852744 3853994 + [E] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase 1908 ysaA CDS COG1142 3854031 3854504 - [C] Fe-S-cluster-containing hydrogenase components 2 1909 yiaJ CDS COG1414 3854621 3855421 - [K] Transcriptional regulator 1910 yiaK CDS COG2055 3855651 3856649 + [C] Malate/L-lactate dehydrogenases yiaL CDS COG2731 3856661 3857125 + [G] Beta-galactosidase, beta subunit cds-NP_462570.1 CDS ROG4552 3857149 3858081 + NA 1911 yiaM CDS COG3090 3858220 3858693 + [G] TRAP-type C4-dicarboxylate transport system, small permease yiaN CDS COG1593 3858696 3859973 + [G] TRAP-type C4-dicarboxylate transport system, large permease yiaO CDS COG1638 3859985 3860971 + [G] TRAP-type C4-dicarboxylate transport system, periplasmic component lyxK CDS COG1070 3860975 3862471 + [G] Sugar (pentulose and hexulose) kinases sgbH CDS COG0269 3862468 3863130 + [G] 3-hexulose-6-phosphate synthase and related proteins sgbU CDS COG3623 3863123 3863983 + [G] Putative L-xylulose-5-phosphate 3-epimerase sgbE CDS COG0235 3863977 3864672 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 1912 cds-NP_462578.1 CDS COG2207 3864833 3865648 - [K] AraC-type DNA-binding domain-containing proteins 1913 cds-NP_462579.1 CDS COG3533 3865912 3867867 + [S] Uncharacterized protein conserved in bacteria 1914 aldB CDS COG1012 3867985 3869523 - [C] NAD-dependent aldehyde dehydrogenases 1915 cds-NP_462581.1 CDS COG1940 3869692 3870573 + [KG] Transcriptional regulator/sugar kinase 1916 selB CDS COG3276 3870858 3872708 - [J] Selenocysteine-specific translation elongation factor selA CDS COG1921 3872705 3874096 - [E] Selenocysteine synthase [seryl-tRNASer selenium transferase] 1917 yibF CDS ROG5032 3874195 3874803 - NA 1918 mtlA CDS COG2213 3875279 3877195 + [G] Phosphotransferase system, mannitol-specific IIBC component mtlD CDS COG0246 3877416 3878564 + [G] Mannitol-1-phosphate/altronate dehydrogenases mtlR CDS COG3722 3878561 3879151 + [K] Transcriptional regulator 1919 cds-NP_462588.1 CDS NA 3879161 3879370 - NA 1920 yibL CDS ROG8523 3879661 3880023 + NA 1921 cds-NP_462590.1 CDS ROG0333 3880513 3881196 + NA cds-NP_462591.1 CDS COG5295 3881240 3885625 + [UW] Autotransporter adhesin 1922 lldP CDS COG1620 3885924 3887579 + [C] L-lactate permease lldR CDS COG2186 3887576 3888352 + [K] Transcriptional regulators lldD CDS COG1304 3888349 3889539 + [C] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy yibK CDS COG0219 3889603 3890076 + [J] Predicted rRNA methylase (SpoU class) 1923 cds-NP_462596.1 CDS COG1609 3890144 3891148 - [K] Transcriptional regulators 1924 cds-NP_462597.1 CDS COG4948 3891467 3892663 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of 1925 cds-NP_462598.1 CDS COG2271 3892737 3894047 + [G] Sugar phosphate permease 1926 cysE CDS COG1045 3894130 3894951 - [E] Serine acetyltransferase gpsA CDS COG0240 3895029 3896048 - [C] Glycerol-3-phosphate dehydrogenase secB CDS COG1952 3896048 3896515 - [U] Preprotein translocase subunit SecB grxC CDS COG0695 3896559 3896810 - [O] Glutaredoxin and related proteins yibN CDS COG0607 3896897 3897328 - [P] Rhodanese-related sulfurtransferase 1927 pmgI CDS COG0696 3897576 3899120 + [G] Phosphoglyceromutase yibP CDS COG4942 3899130 3900413 + [D] Membrane-bound metallopeptidase yigQ CDS COG2861 3900417 3901379 + [S] Uncharacterized protein conserved in bacteria 1928 yibD CDS COG0463 3901366 3902400 - [M] Glycosyltransferases involved in cell wall biogenesis 1929 tdh CDS COG1063 3902894 3903919 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases kbl CDS COG0156 3903929 3905125 - [H] 7-keto-8-aminopelargonate synthetase and related enzymes 1930 rfaD CDS COG0451 3905328 3906260 + [MG] Nucleoside-diphosphate-sugar epimerases rfaF CDS COG0859 3906263 3907309 + [M] ADP-heptose:LPS heptosyltransferase rfaC CDS COG0859 3907309 3908262 + [M] ADP-heptose:LPS heptosyltransferase rfaL CDS COG3307 3908302 3909516 + [M] Lipid A core - O-antigen ligase 1931 rfaK CDS COG0438 3909573 3910718 - [M] Glycosyltransferase 1932 rfaZ CDS NA 3910819 3911628 - NA 1933 rfaY CDS ROG3683 3911778 3912476 - NA rfaJ CDS COG1442 3912499 3913509 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases rfaI CDS COG1442 3913527 3914540 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases rfaB CDS COG0438 3914546 3915625 - [M] Glycosyltransferase yibR CDS COG1442 3915695 3915928 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases rfaP CDS ROG1796 3915960 3916757 - NA rfaG CDS COG0438 3916750 3917874 - [M] Glycosyltransferase rfaQ CDS COG0859 3917871 3918905 - [M] ADP-heptose:LPS heptosyltransferase 1934 kdtA CDS COG1519 3919350 3920627 + [M] 3-deoxy-D-manno-octulosonic-acid transferase kdtB CDS COG0669 3920636 3921115 + [H] Phosphopantetheine adenylyltransferase 1935 mutM CDS COG0266 3921143 3921952 - [L] Formamidopyrimidine-DNA glycosylase rpmG CDS COG0267 3922050 3922217 - [J] Ribosomal protein L33 rpmB CDS COG0227 3922238 3922474 - [J] Ribosomal protein L28 radC CDS COG2003 3922692 3923357 - [L] DNA repair proteins 1936 dfp CDS COG0452 3923530 3924753 + [H] Phosphopantothenoylcysteine synthetase/decarboxylase dut CDS COG0756 3924734 3925189 + [F] dUTPase 1937 ttk CDS COG1309 3925297 3925893 + [K] Transcriptional regulator 1938 pyrE CDS COG0461 3925971 3926612 - [F] Orotate phosphoribosyltransferase rph CDS COG0689 3926691 3927407 - [J] RNase PH 1939 yicC CDS COG1561 3927533 3928396 + [S] Uncharacterized stress-induced protein 1940 cds-NP_462636.1 CDS COG0583 3928446 3929348 - [K] Transcriptional regulator 1941 cds-NP_462637.1 CDS COG0491 3929422 3930303 + [R] Zn-dependent hydrolases, including glyoxylases 1942 yigC CDS COG2860 3930554 3931171 + [S] Predicted membrane protein 1943 yicF CDS COG0272 3931168 3932853 - [L] NAD-dependent DNA ligase (contains BRCT domain 1944 gmk CDS COG0194 3933110 3933733 + [F] Guanylate kinase rpoZ CDS COG1758 3933788 3934063 + [K] DNA-directed RNA polymerase, subunit K/omega spoT CDS COG0317 3934082 3936193 + [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases spoU CDS COG0566 3936198 3936887 + [J] rRNA methylases recG CDS COG1200 3936893 3938974 + [LK] RecG-like helicase 1945 cds-NP_462645.1 CDS ROG5065 3938977 3939828 - NA gltS CDS COG0786 3939831 3941036 - [E] Na+/glutamate symporter 1946 yicE CDS COG2233 3941264 3942655 + [F] Xanthine/uracil permeases 1947 yicH CDS NA 3942776 3944485 + NA 1948 yicI CDS COG1501 3944588 3946906 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases yicJ CDS COG2211 3946918 3948300 - [G] Na+/melibiose symporter and related transporters 1949 selC tRNA NA 3948588 3948678 + NA 1950 cds-NP_462651.1 CDS NA 3948999 3949343 - NA 1951 sugR CDS COG3950 3950021 3951211 + [R] Predicted ATP-binding protein involved in virulence cds-NP_462653.1 CDS NA 3951208 3951558 + NA 1952 rhuM CDS COG3943 3951745 3952782 + [R] Virulence protein 1953 rmbA CDS NA 3954081 3954698 + NA 1954 misL CDS COG3468 3954773 3957640 + [MU] Type V secretory pathway, adhesin AidA 1955 fidL CDS NA 3957735 3958199 - NA marT CDS COG3710 3958210 3959067 - [K] DNA-binding winged-HTH domains cds-NP_453069.1 CDS NA 3959120 3959233 - NA 1956 slsA CDS COG1335 3959851 3960531 + [Q] Amidases related to nicotinamidase 1957 cigR CDS ROG2687 3960760 3961239 - NA 1958 mgtB CDS COG0474 3961554 3964280 - [P] Cation transport ATPase mgtC CDS COG1285 3964500 3965195 - [S] Uncharacterized membrane protein 1959 yicL CDS COG0697 3965704 3966606 + [GER] Permeases of the drug/metabolite transporter (DMT) 1960 cds-NP_462665.1 CDS COG5464 3966649 3967590 - [S] Uncharacterized conserved protein 1961 cds-NP_462666.1 CDS ROG1892 3967826 3968569 - NA cds-NP_462667.1 CDS COG1921 3968556 3969665 - [E] Selenocysteine synthase [seryl-tRNASer selenium transferase] cds-NP_462668.3 CDS COG3716 3969669 3970529 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID cds-NP_462669.1 CDS COG3715 3970526 3971275 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC cds-NP_462670.1 CDS COG3444 3971421 3971906 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB cds-NP_462671.1 CDS COG2893 3971917 3972342 - [G] Phosphotransferase system, mannose/fructose-specific component IIA cds-NP_462672.1 CDS COG3933 3972561 3975359 - [K] Transcriptional antiterminator 1962 cds-NP_462673.1 CDS ROG3559 3975556 3975849 + NA 1963 cds-NP_462674.1 CDS COG2723 3975955 3977337 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 1964 yicM CDS COG2814 3977397 3978590 - [G] Arabinose efflux permease 1965 cds-NP_462676.1 CDS COG4737 3978806 3979165 + [S] Uncharacterized protein conserved in bacteria cds-NP_462677.1 CDS COG2944 3979149 3979472 + [K] Predicted transcriptional regulator 1966 cds-NP_462678.1 CDS COG1925 3979563 3979832 - [G] Phosphotransferase system, HPr-related proteins cds-NP_462679.1 CDS COG0191 3979842 3980702 - [G] Fructose/tagatose bisphosphate aldolase cds-NP_462680.1 CDS COG1070 3980765 3982249 - [G] Sugar (pentulose and hexulose) kinases cds-NP_462681.1 CDS COG3775 3982242 3983600 - [G] Phosphotransferase system, galactitol-specific IIC component cds-NP_462682.1 CDS COG3414 3983676 3983963 - [G] Phosphotransferase system, galactitol-specific IIB component cds-NP_462683.1 CDS COG1762 3983960 3984433 - [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) cds-NP_462684.1 CDS COG2188 3984451 3985194 - [K] Transcriptional regulators 1967 yicN CDS NA 3985547 3985999 - NA 1968 uhpT CDS COG2271 3986192 3987583 - [G] Sugar phosphate permease uhpC CDS COG2271 3987726 3989054 - [G] Sugar phosphate permease uhpB CDS COG3851 3989064 3990566 - [T] Signal transduction histidine kinase, glucose-6-phosphate specific uhpA CDS COG2197 3990566 3991156 - [TK] Response regulator containing a CheY-like receiver 1969 cds-NP_462690.1 CDS ROG0955 3991231 3992244 - NA cds-NP_462691.1 CDS COG0738 3992256 3993572 - [G] Fucose permease cds-NP_462692.1 CDS COG0524 3993603 3994523 - [G] Sugar kinases, ribokinase family 1970 cds-NP_462693.1 CDS COG1349 3994848 3995633 + [KG] Transcriptional regulators of sugar metabolism 1971 ilvN CDS COG0440 3995635 3995925 - [E] Acetolactate synthase, small (regulatory) subunit ilvB CDS COG0028 3995929 3997617 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 1972 ivbL CDS NA 3997724 3997822 - NA 1973 ysdA CDS NA 3998345 3998436 + NA ysdA_2 CDS NA 3998435 3998459 + NA ysdB CDS NA 3998456 3998545 + NA 1974 cds-NP_462698.3 CDS COG0697 3998638 3999498 + [GER] Permeases of the drug/metabolite transporter (DMT) emrD CDS COG0477 3999701 4000885 + [GEPR] Permeases of the major facilitator superfamily 1975 cds-NP_462700.1 CDS ROG8415 4000812 4001897 - NA 1976 dsdC CDS COG0583 4001961 4002884 - [K] Transcriptional regulator 1977 dsdX CDS COG2610 4003110 4004447 + [GE] H+/gluconate symporter and related permeases dsdA CDS COG3048 4004465 4005787 + [E] D-serine dehydratase 1978 yidF CDS COG0641 4005869 4006399 - [R] Arylsulfatase regulator (Fe-S oxidoreductase) yidG CDS NA 4006396 4006758 - NA yidH CDS COG2149 4006748 4007095 - [S] Predicted membrane protein 1979 yidE CDS COG2985 4007539 4009200 - [R] Predicted permease 1980 ibpB CDS COG0071 4009390 4009818 - [O] Molecular chaperone (small heat shock protein) ibpA CDS COG0071 4009928 4010341 - [O] Molecular chaperone (small heat shock protein) 1981 yidQ CDS COG5645 4010648 4010983 + [R] Predicted periplasmic lipoprotein 1982 yidR CDS COG1506 4010985 4012211 - [E] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 1983 ccmH_2 CDS COG3088 4012333 4013376 - [O] Uncharacterized protein involved in biosynthesis of ccmG_2 CDS COG0526 4013373 4013930 - [OC] Thiol-disulfide isomerase and thioredoxins ccmF_2 CDS COG1138 4013927 4015858 - [O] Cytochrome c biogenesis factor ccmE_2 CDS COG2332 4015855 4016334 - [O] Cytochrome c-type biogenesis protein CcmE ccmD_2 CDS COG3114 4016331 4016543 - [U] Heme exporter protein D ccmC_2 CDS COG0755 4016540 4017277 - [O] ABC-type transport system involved in cytochrome ccmB_2 CDS COG2386 4017329 4017988 - [O] ABC-type transport system involved in cytochrome ccmA_2 CDS COG4133 4017985 4018602 - [O] ABC-type transport system involved in cytochrome cds-NP_462720.1 CDS COG1858 4018608 4020008 - [P] Cytochrome c peroxidase 1984 torD CDS COG3381 4020198 4020830 - [R] Uncharacterized component of anaerobic dehydrogenases torA CDS COG0243 4020823 4023375 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing torC CDS COG3005 4023365 4024549 - [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c 1985 torR CDS COG0745 4024679 4025371 + [TK] Response regulators consisting of a CheY-like 1986 torT CDS COG1879 4025344 4026384 - [G] ABC-type sugar transport system, periplasmic component 1987 torS CDS COG0642 4026464 4029199 + [T] Signal transduction histidine kinase 1988 dgoT CDS COG2271 4029225 4030562 - [G] Sugar phosphate permease 1989 dgoA CDS COG4948 4030647 4031795 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of 1990 dgoK CDS COG3734 4032393 4033271 - [G] 2-keto-3-deoxy-galactonokinase dgoR CDS COG2186 4033268 4033957 - [K] Transcriptional regulators 1991 yidA CDS COG0561 4034218 4035063 - [R] Predicted hydrolases of the HAD superfamily 1992 cds-NP_462732.1 CDS ROG2472 4035369 4036631 + NA cds-NP_462733.1 CDS COG4948 4036645 4037838 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of 1993 cds-NP_462734.1 CDS COG0583 4037953 4038849 + [K] Transcriptional regulator 1994 gyrB CDS COG0187 4038868 4041282 - [L] Type IIA topoisomerase (DNA gyrase/topo II, recF CDS COG1195 4041311 4042384 - [L] Recombinational DNA repair ATPase (RecF pathway) dnaN CDS COG0592 4042532 4043632 - [L] DNA polymerase sliding clamp subunit (PCNA dnaA CDS COG0593 4043637 4045037 - [L] ATPase involved in DNA replication initiation 1995 rpmH CDS ROG3844 4045698 4045838 + NA rnpA CDS COG0594 4045855 4046214 + [J] RNase P protein component cds-NP_462741.1 CDS COG0759 4046178 4046435 + [S] Uncharacterized conserved protein yidC CDS COG0706 4046438 4048084 + [U] Preprotein translocase subunit YidC trmE CDS COG0486 4048226 4049590 + [R] Predicted GTPase 1996 cds-NP_462744.1 CDS NA 4051391 4052353 + NA 1997 cds-NP_462745.3 CDS ROG5068 4052419 4053288 + NA 1998 yidY CDS NA 4054090 4055277 + NA yidZ CDS COG0583 4055246 4056205 + [K] Transcriptional regulator 1999 yieE CDS COG2091 4056363 4057118 + [H] Phosphopantetheinyl transferase yieF CDS COG0431 4057118 4057702 + [R] Predicted flavoprotein 2000 yieG CDS COG2252 4057747 4059210 - [R] Permeases 2001 yieH CDS COG0637 4059253 4059918 + [R] Predicted phosphatase/phosphohexomutase 2002 phoU CDS COG0704 4060013 4060738 - [P] Phosphate uptake regulator pstB CDS COG1117 4060753 4061526 - [P] ABC-type phosphate transport system, ATPase component pstA CDS COG0581 4061613 4062503 - [P] ABC-type phosphate transport system, permease component pstC CDS COG0573 4062503 4063462 - [P] ABC-type phosphate transport system, permease component pstS CDS COG0226 4063598 4064638 - [P] ABC-type phosphate transport system, periplasmic component 2003 cds-NP_462757.1 CDS COG1299 4064805 4066178 - [G] Phosphotransferase system, fructose-specific IIC component cds-NP_462758.1 CDS COG0169 4066227 4067045 - [E] Shikimate 5-dehydrogenase 2004 cds-NP_462759.1 CDS COG4533 4067140 4068897 + [R] ABC-type uncharacterized transport system, periplasmic component 2005 glmS CDS COG0449 4069048 4070877 - [M] Glucosamine 6-phosphate synthetase, contains amidotransferase and glmU CDS COG1207 4071066 4072436 - [M] N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch 2006 cds-NP_462762.1 CDS COG0670 4072756 4073454 - [R] Integral membrane protein, interacts with FtsH 2007 atpC CDS COG0355 4073684 4074103 - [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial atpD CDS COG0055 4074124 4075506 - [C] F0F1-type ATP synthase, beta subunit atpG CDS COG0224 4075533 4076396 - [C] F0F1-type ATP synthase, gamma subunit atpA CDS COG0056 4076447 4077988 - [C] F0F1-type ATP synthase, alpha subunit atpH CDS COG0712 4078001 4078534 - [C] F0F1-type ATP synthase, delta subunit (mitochondrial atpF CDS COG0711 4078549 4079019 - [C] F0F1-type ATP synthase, subunit b atpE CDS COG0636 4079079 4079318 - [C] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, atpB CDS COG0356 4079365 4080180 - [C] F0F1-type ATP synthase, subunit a atpI CDS COG3312 4080189 4080569 - [C] F0F1-type ATP synthase, subunit I 2008 gidB CDS COG0357 4081185 4081808 - [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial gidA CDS COG0445 4081911 4083800 - [D] NAD/FAD-utilizing enzyme apparently involved in cell 2009 mioC CDS COG0716 4084179 4084622 - [C] Flavodoxins 2010 asnC CDS COG1522 4084712 4085170 - [K] Transcriptional regulators 2011 asnA CDS COG2502 4085321 4086313 + [E] Asparagine synthetase A 2012 yieM CDS COG2425 4086318 4087742 - [R] Uncharacterized protein containing a von Willebrand yieN CDS ROG5956 4087763 4089259 - NA 2013 kup CDS COG3158 4089607 4091475 + [P] K+ transporter 2014 rbsD CDS COG1869 4091672 4092091 + [G] ABC-type ribose transport system, auxiliary component rbsA CDS COG1129 4092099 4093604 + [G] ABC-type sugar transport system, ATPase component rbsC CDS COG1172 4093610 4094575 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components rbsB CDS COG1879 4094600 4095490 + [G] ABC-type sugar transport system, periplasmic component rbsK CDS COG0524 4095624 4096553 + [G] Sugar kinases, ribokinase family rbsR CDS COG1609 4096557 4097555 + [K] Transcriptional regulators 2015 yieO CDS COG0477 4097521 4098948 - [GEPR] Permeases of the major facilitator superfamily yieP CDS COG2186 4098960 4099664 - [K] Transcriptional regulators 2016 rrsC rRNA NA 4100145 4101688 + NA gltU tRNA NA 4101772 4101844 + NA rrlC rRNA NA 4102041 4105034 + NA rrfC rRNA NA 4105124 4105243 + NA aspT tRNA NA 4105296 4105375 + NA trpT tRNA NA 4105381 4105453 + NA 2017 yifA CDS COG0583 4105558 4106406 - [K] Transcriptional regulator 2018 yifE CDS COG3085 4106513 4106851 + [S] Uncharacterized protein conserved in bacteria 2019 yifB CDS COG0606 4106876 4108396 - [O] Predicted ATPase with chaperone activity 2020 ilvL CDS NA 4108748 4108846 + NA 2021 ilvG CDS COG0028 4108986 4110632 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate ilvM CDS COG3978 4110632 4110892 + [S] Acetolactate synthase (isozyme II), small (regulatory) ilvE CDS COG0115 4110910 4111839 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ilvD CDS COG0129 4112000 4113850 + [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase ilvA CDS COG1171 4113853 4115397 + [E] Threonine dehydratase 2022 cds-NP_462797.1 CDS COG4679 4115681 4115998 + [S] Phage-related protein cds-NP_462798.1 CDS COG5606 4115995 4116336 + [S] Uncharacterized conserved small protein 2023 ilvY CDS COG0583 4116339 4117226 - [K] Transcriptional regulator 2024 ilvC CDS COG0059 4117390 4118865 + [EH] Ketol-acid reductoisomerase 2025 ppiC CDS COG0760 4118957 4119238 - [O] Parvulin-like peptidyl-prolyl isomerase 2026 cds-NP_462802.1 CDS COG3201 4119527 4119676 + [H] Nicotinamide mononucleotide transporter 2027 rep CDS COG0210 4119776 4121800 + [L] Superfamily I DNA and RNA helicases 2028 gppA CDS COG0248 4121840 4123321 - [FP] Exopolyphosphatase rhlB CDS COG0513 4123440 4124705 - [LKJ] Superfamily II DNA and RNA helicases 2029 trxA CDS COG0526 4124849 4125178 + [OC] Thiol-disulfide isomerase and thioredoxins 2030 rho CDS COG1158 4125597 4126856 + [K] Transcription termination factor 2031 rfe CDS COG0472 4127086 4128189 + [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase wzzE CDS COG3765 4128201 4129247 + [M] Chain length determinant protein wecB CDS COG0381 4129303 4130433 + [M] UDP-N-acetylglucosamine 2-epimerase wecC CDS COG0677 4130430 4131692 + [M] UDP-N-acetyl-D-mannosaminuronate dehydrogenase rffG CDS COG1088 4131692 4132759 + [M] dTDP-D-glucose 4,6-dehydratase rffH CDS COG1209 4132792 4133016 + [M] dTDP-glucose pyrophosphorylase 2032 wecD CDS COG0454 4133123 4133671 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases wecE CDS COG0399 4133676 4134806 + [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved wzxE CDS COG2244 4134808 4136058 + [R] Membrane protein involved in the export cds-NP_462817.1 CDS ROG4451 4136055 4137134 + NA wecF CDS NA 4137131 4138489 + NA wecG CDS COG1922 4138486 4139226 + [M] Teichoic acid biosynthesis proteins 2033 yifK CDS COG1113 4139433 4140818 + [E] Gamma-aminobutyrate permease and related permeases 2034 argX tRNA NA 4140921 4140994 + NA hisR tRNA NA 4141052 4141124 + NA leuT tRNA NA 4141148 4141231 + NA proM tRNA NA 4141277 4141350 + NA 2035 hemY CDS COG3071 4141935 4143134 - [H] Uncharacterized enzyme of heme biosynthesis hemX CDS COG2959 4143134 4144303 - [H] Uncharacterized enzyme of heme biosynthesis hemD CDS COG1587 4144325 4145065 - [H] Uroporphyrinogen-III synthase hemC CDS COG0181 4145062 4146018 - [H] Porphobilinogen deaminase 2036 cyaA CDS COG3072 4146380 4148926 + [F] Adenylate cyclase 2037 cds-NP_462826.1 CDS NA 4149034 4149387 + NA 2038 cds-NP_462827.1 CDS NA 4149573 4150115 + NA cds-NP_462828.1 CDS NA 4150127 4150489 + NA 2039 cyaY CDS COG1965 4150560 4150880 - [P] Protein implicated in iron transport, frataxin 2040 cds-NP_462830.1 CDS ROG4694 4150950 4151339 - NA 2041 yifL CDS COG5567 4152035 4152238 + [N] Predicted small periplasmic lipoprotein dapF CDS COG0253 4152272 4153099 + [E] Diaminopimelate epimerase yigA CDS COG3159 4153096 4153803 + [S] Uncharacterized protein conserved in bacteria xerC CDS COG4973 4153800 4154702 + [L] Site-specific recombinase XerC yigB CDS COG1011 4154702 4155418 + [R] Predicted hydrolase (HAD superfamily) 2042 uvrD CDS COG0210 4155554 4157716 + [L] Superfamily I DNA and RNA helicases 2043 corA CDS COG0598 4158188 4159138 + [P] Mg2+ and Co2+ transporters 2044 yigF CDS ROG4207 4159187 4159567 - NA yigG CDS NA 4159583 4160041 - NA rarD CDS COG2962 4160076 4160960 - [R] Predicted permeases yigI CDS COG2050 4161004 4161489 - [Q] Uncharacterized protein, possibly involved in aromatic 2045 pldA CDS COG2829 4161636 4162505 + [M] Outer membrane phospholipase A 2046 recQ CDS COG0514 4162571 4164418 + [L] Superfamily II DNA helicase 2047 rhtC CDS COG1280 4164482 4165102 + [E] Putative threonine efflux protein 2048 rthB CDS COG1280 4165142 4165762 - [E] Putative threonine efflux protein 2049 pldB CDS COG2267 4165873 4166889 + [I] Lysophospholipase yigL CDS COG0561 4166905 4167705 + [R] Predicted hydrolases of the HAD superfamily yigM CDS COG0697 4167786 4168685 + [GER] Permeases of the drug/metabolite transporter (DMT) 2050 metR CDS COG0583 4168573 4169526 - [K] Transcriptional regulator 2051 metE CDS COG0620 4169775 4172039 + [E] Methionine synthase II (cobalamin-independent) 2052 cds-NP_462851.1 CDS COG0641 4172383 4173726 + [R] Arylsulfatase regulator (Fe-S oxidoreductase) 2053 dlhH CDS COG0412 4173806 4174618 - [Q] Dienelactone hydrolase and related enzymes 2054 udp CDS COG2820 4174877 4175638 + [F] Uridine phosphorylase 2055 yigN CDS COG1322 4175778 4177208 + [S] Uncharacterized protein conserved in bacteria 2056 ubiE CDS COG2226 4177304 4178059 + [H] Methylase involved in ubiquinone/menaquinone biosynthesis yigP CDS COG3165 4178069 4178674 + [S] Uncharacterized protein conserved in bacteria aarF CDS COG0661 4178671 4180311 + [R] Predicted unusual protein kinase 2057 tatA CDS COG1826 4180517 4180771 + [U] Sec-independent protein secretion pathway components tatB CDS COG1826 4180775 4181323 + [U] Sec-independent protein secretion pathway components tatC CDS COG0805 4181326 4182105 + [U] Sec-independent protein secretion pathway component TatC yigW CDS COG0084 4182147 4182929 + [L] Mg-dependent DNase 2058 rfaH CDS COG0250 4182937 4183425 - [K] Transcription antiterminator 2059 yigC_2 CDS COG0043 4183611 4185089 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 2060 ubiB CDS COG0543 4185175 4185876 + [HC] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 2061 cds-NP_462865.1 CDS ROG2478 4186130 4186843 + NA cds-NP_462866.1 CDS ROG2478 4186895 4187953 + NA 2062 fadA CDS COG0183 4188150 4189313 - [I] Acetyl-CoA acetyltransferase fadB CDS COG1250 4189323 4191512 - [I] 3-hydroxyacyl-CoA dehydrogenase 2063 pepQ CDS COG0006 4191702 4193033 + [E] Xaa-Pro aminopeptidase yigZ CDS COG1739 4193033 4193647 + [S] Uncharacterized conserved protein trkH CDS COG0168 4193686 4195137 + [P] Trk-type K+ transport systems, membrane components hemG CDS COG4635 4195149 4195694 + [CH] Flavodoxin 2064 rrsA rRNA NA 4196072 4197613 + NA ileT tRNA NA 4197683 4197756 + NA alaT tRNA NA 4197871 4197943 + NA rrlA rRNA NA 4198129 4201123 + NA rrfA rRNA NA 4201315 4201436 + NA 2065 mobB CDS COG1763 4201697 4202212 - [H] Molybdopterin-guanine dinucleotide biosynthesis protein mobA CDS COG0746 4202209 4202793 - [H] Molybdopterin-guanine dinucleotide biosynthesis protein A 2066 yihD CDS COG3084 4202863 4203132 + [S] Uncharacterized protein conserved in bacteria yihE CDS COG2334 4203209 4204195 + [R] Putative homoserine kinase type II (protein dsbA CDS COG1651 4204212 4204835 + [O] Protein-disulfide isomerase 2067 yihG CDS COG0204 4204848 4205756 - [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 2068 polA CDS COG0749 4206144 4208930 + [L] DNA polymerase I - 3'-5' exonuclease 2069 spf CDS NA 4209097 4209144 + NA 2070 yihA CDS COG0218 4209265 4209897 - [R] Predicted GTPase 2071 cds-NP_462882.1 CDS NA 4210137 4210361 + NA 2072 yihI CDS COG3078 4210480 4210995 + [S] Uncharacterized protein conserved in bacteria 2073 hemN CDS COG0635 4211184 4212557 + [H] Coproporphyrinogen III oxidase and related Fe-S 2074 glnG CDS COG2204 4212870 4214279 - [T] Response regulator containing CheY-like receiver, AAA-type glnL CDS COG3852 4214288 4215337 - [T] Signal transduction histidine kinase, nitrogen specific 2075 glnA CDS COG0174 4215612 4217021 - [E] Glutamine synthetase cds-NP_453298.1 CDS NA 4217000 4217428 - NA 2076 typA CDS COG1217 4217397 4219220 + [T] Predicted membrane GTPase involved in stress 2077 cds-NP_462890.1 CDS COG0561 4219275 4220009 - [R] Predicted hydrolases of the HAD superfamily cds-NP_462891.1 CDS ROG7558 4219994 4220872 - NA cds-NP_462892.1 CDS COG0635 4220869 4222110 - [H] Coproporphyrinogen III oxidase and related Fe-S cds-NP_462893.3 CDS ROG4601 4222112 4222987 - NA cds-NP_462894.3 CDS ROG6979 4222980 4224005 - NA cds-NP_462895.1 CDS NA 4224018 4224866 - NA 2078 yshA CDS NA 4225023 4225715 - NA 2079 yihO CDS COG2211 4225783 4227204 - [G] Na+/melibiose symporter and related transporters yihP CDS COG2211 4227250 4228632 - [G] Na+/melibiose symporter and related transporters yihQ CDS COG1501 4228678 4230714 - [G] Alpha-glucosidases, family 31 of glycosyl hydrolases yihR CDS COG2017 4230758 4231615 - [G] Galactose mutarotase and related enzymes yihS CDS COG2942 4231619 4232860 - [G] N-acyl-D-glucosamine 2-epimerase yihT CDS COG3684 4232876 4233754 - [G] Tagatose-1,6-bisphosphate aldolase yihU CDS COG2084 4233777 4234673 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 2080 yihV CDS COG0524 4234838 4235734 + [G] Sugar kinases, ribokinase family yihW CDS COG1349 4235768 4236571 + [KG] Transcriptional regulators of sugar metabolism 2081 yihX CDS COG1011 4236762 4237361 + [R] Predicted hydrolase (HAD superfamily) rbn CDS COG1295 4237355 4238227 + [S] Predicted membrane protein yihZ CDS COG1490 4238224 4238661 + [J] D-Tyr-tRNAtyr deacylase yiiD CDS COG0454 4238658 4239647 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2082 cds-NP_462910.3 CDS COG5499 4239662 4240108 - [K] Predicted transcription regulator containing HTH domain cds-NP_462911.1 CDS COG4680 4240105 4240416 - [S] Uncharacterized protein conserved in bacteria cds-NP_462912.1 CDS COG0657 4240502 4241431 - [I] Esterase/lipase 2083 cds-NP_462913.3 CDS COG2944 4241997 4242251 + [K] Predicted transcriptional regulator 2084 fdhE CDS COG3058 4242298 4243227 - [O] Uncharacterized protein involved in formate dehydrogenase fdoI CDS COG2864 4243224 4243859 - [C] Cytochrome b subunit of formate dehydrogenase fdoH CDS COG0437 4243856 4244758 - [C] Fe-S-cluster-containing hydrogenase components 1 fdoG CDS COG0243 4244771 4247821 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 2085 fdhD CDS COG1526 4248016 4248852 + [C] Uncharacterized protein required for formate dehydrogenase 2086 cds-NP_462919.1 CDS NA 4249120 4250151 - NA 2087 yiiG CDS ROG0077 4250334 4251434 + NA 2088 cds-NP_462921.1 CDS ROG5608 4251789 4252112 - NA cds-NP_462922.1 CDS COG1296 4252112 4252771 - [E] Predicted branched-chain amino acid permease (azaleucine 2089 cds-NP_462923.1 CDS COG1396 4252854 4253420 + [K] Predicted transcriptional regulators 2090 yiiL CDS COG3254 4253509 4253823 - [S] Uncharacterized conserved protein cds-NP_462925.1 CDS COG1454 4253820 4254968 - [C] Alcohol dehydrogenase, class IV rhaD CDS COG0235 4255095 4255922 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and rhaA CDS COG4806 4256065 4257324 - [G] L-rhamnose isomerase rhaB CDS COG1070 4257321 4258790 - [G] Sugar (pentulose and hexulose) kinases 2091 rhaS CDS COG2207 4259078 4259914 + [K] AraC-type DNA-binding domain-containing proteins rhaR CDS COG2207 4260067 4260915 + [K] AraC-type DNA-binding domain-containing proteins 2092 rhaT CDS NA 4260912 4261946 - NA 2093 cds-NP_462932.3 CDS NA 4262565 4263248 + NA 2094 cds-NP_462933.1 CDS COG1593 4263406 4264713 - [G] TRAP-type C4-dicarboxylate transport system, large permease cds-NP_462934.1 CDS COG3090 4264706 4265221 - [G] TRAP-type C4-dicarboxylate transport system, small permease cds-NP_462935.1 CDS COG1638 4265240 4266223 - [G] TRAP-type C4-dicarboxylate transport system, periplasmic component 2095 sodA CDS COG0605 4266552 4267172 + [P] Superoxide dismutase yiiM CDS COG2258 4267179 4267931 + [S] Uncharacterized protein conserved in bacteria cds-NP_462938.1 CDS ROG0530 4267943 4268338 + NA 2096 cpxA CDS COG2205 4268389 4269762 - [T] Osmosensitive K+ channel histidine kinase cpxR CDS COG0745 4269759 4270457 - [TK] Response regulators consisting of a CheY-like 2097 cpxP CDS COG3678 4270608 4271108 + [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 2098 yiiP CDS COG0053 4271256 4272158 + [P] Predicted Co/Zn/Cd cation transporters 2099 pfkA CDS COG0205 4272343 4273305 + [G] 6-phosphofructokinase 2100 sbp CDS COG1613 4273509 4274498 + [P] ABC-type sulfate transport system, periplasmic component ushB CDS COG2134 4274599 4275354 + [I] CDP-diacylglycerol pyrophosphatase 2101 cds-NP_462946.1 CDS COG2211 4275617 4276951 + [G] Na+/melibiose symporter and related transporters cds-NP_462947.1 CDS COG0524 4276962 4277921 + [G] Sugar kinases, ribokinase family cds-NP_462948.1 CDS COG1397 4277931 4278971 + [O] ADP-ribosylglycohydrolase cds-NP_462949.1 CDS COG2188 4279034 4279756 + [K] Transcriptional regulators 2102 cds-NP_462950.1 CDS NA 4279854 4280018 + NA cds-NP_462951.1 CDS COG2134 4280034 4280165 + [I] CDP-diacylglycerol pyrophosphatase 2103 cds-NP_462952.1 CDS ROG4138 4280255 4280521 - NA 2104 ydeV CDS COG1070 4280619 4282211 - [G] Sugar (pentulose and hexulose) kinases ydeW CDS COG2390 4282299 4283258 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 2105 ego CDS COG1129 4283514 4285049 + [G] ABC-type sugar transport system, ATPase component ydeY CDS COG1172 4285043 4286086 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components ydeZ CDS COG1172 4286083 4287084 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components yneA CDS COG1879 4287113 4288135 + [G] ABC-type sugar transport system, periplasmic component yneB CDS COG1830 4288164 4289039 + [G] DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes yneC CDS COG1359 4289083 4289412 + [S] Uncharacterized conserved protein cds-NP_462961.1 CDS COG0036 4289422 4290186 + [G] Pentose-5-phosphate-3-epimerase 2106 tpiA CDS COG0149 4290278 4291045 - [G] Triosephosphate isomerase 2107 yiiQ CDS NA 4291158 4291754 - NA 2108 yiiR CDS COG3152 4291855 4292283 + [S] Predicted membrane protein 2109 fpr CDS COG1018 4292390 4293136 - [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 2110 glpX CDS COG1494 4293233 4294243 - [G] Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins glpK CDS COG0554 4294355 4295863 - [C] Glycerol kinase glpF CDS COG0580 4295884 4296729 - [G] Glycerol uptake facilitator and related permeases 2111 yiiU CDS COG3074 4297128 4297367 + [S] Uncharacterized protein conserved in bacteria 2112 menG CDS COG0684 4297589 4298074 - [H] Demethylmenaquinone methyltransferase menA CDS COG1575 4298167 4299096 - [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2113 hslU CDS COG1220 4299163 4300494 - [O] ATP-dependent protease HslVU (ClpYQ), ATPase subunit hslV CDS COG5405 4300504 4301034 - [O] ATP-dependent protease HslVU (ClpYQ), peptidase subunit ftsN CDS COG3087 4301126 4302100 - [D] Cell division protein 2114 cytR CDS COG1609 4302194 4303219 - [K] Transcriptional regulators priA CDS COG1198 4303374 4305572 - [L] Primosomal protein N' (replication factor Y) 2115 rpmE CDS COG0254 4305776 4305988 + [J] Ribosomal protein L31 2116 cds-NP_462978.1 CDS ROG1262 4306034 4306696 - NA 2117 cds-NP_462979.1 CDS ROG2478 4306897 4308687 - NA 2118 metJ CDS COG3060 4309144 4309461 - [KE] Transcriptional regulator of met regulon 2119 metB CDS COG0626 4309726 4310886 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases metL CDS COG0527 4310889 4313321 + [E] Aspartokinases 2120 cds-NP_462983.1 CDS COG0668 4313437 4314294 - [M] Small-conductance mechanosensitive channel 2121 cds-NP_462984.1 CDS NA 4315530 4316654 - NA 2122 cds-NP_462985.1 CDS COG0737 4316790 4318346 + [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 2123 metF CDS COG0685 4318541 4319431 + [E] 5,10-methylenetetrahydrofolate reductase 2124 katG CDS COG0376 4319596 4321776 + [P] Catalase (peroxidase I) 2125 yijF CDS COG3738 4321834 4322457 - [S] Uncharacterized protein conserved in bacteria 2126 gldA CDS COG0371 4322716 4323819 - [C] Glycerol dehydrogenase and related enzymes talC CDS COG0176 4323831 4324493 - [G] Transaldolase ptsA CDS COG1080 4324504 4327005 - [G] Phosphoenolpyruvate-protein kinase (PTS system EI component 2127 frwC CDS COG1299 4327314 4328393 + [G] Phosphotransferase system, fructose-specific IIC component frwB CDS COG1445 4328408 4328728 + [G] Phosphotransferase system fructose-specific component IIB pflD CDS COG1882 4328827 4331124 + [C] Pyruvate-formate lyase pflC CDS COG1180 4331090 4331968 + [O] Pyruvate-formate lyase-activating enzyme frwD CDS COG1445 4331970 4332323 + [G] Phosphotransferase system fructose-specific component IIB 2128 yijO CDS COG2207 4332310 4333161 - [K] AraC-type DNA-binding domain-containing proteins 2129 yijP CDS COG2194 4333322 4335055 - [R] Predicted membrane-associated, metal-dependent hydrolase 2130 ppc CDS COG2352 4335266 4337917 - [C] Phosphoenolpyruvate carboxylase 2131 argE CDS COG0624 4338286 4339437 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 2132 argC CDS COG0002 4339526 4340530 + [E] Acetylglutamate semialdehyde dehydrogenase argB CDS COG0548 4340538 4341314 + [E] Acetylglutamate kinase argH CDS COG0165 4341432 4342808 + [E] Argininosuccinate lyase 2133 oxyR CDS COG0583 4343093 4344010 + [K] Transcriptional regulator 2134 udhA CDS COG1249 4343993 4345393 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 2135 yijC CDS ROG6516 4345592 4346227 + NA yijD CDS COG3307 4346243 4346602 + [M] Lipid A core - O-antigen ligase 2136 trmA CDS COG2265 4346649 4347749 - [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 2137 btuB CDS COG4206 4348123 4349967 + [H] Outer membrane cobalamin receptor protein murI CDS COG0796 4349912 4350763 + [M] Glutamate racemase 2138 rrsB rRNA NA 4351143 4352686 + NA ileU tRNA NA 4352754 4352827 + NA rna-STM4134 tRNA NA 4352942 4353014 + NA rrlB rRNA NA 4353200 4356193 + NA rrfB rRNA NA 4356386 4356506 + NA 2139 murB CDS COG0812 4356685 4357713 + [M] UDP-N-acetylmuramate dehydrogenase birA CDS COG0340 4357710 4358672 + [H] Biotin-(acetyl-CoA carboxylase) ligase 2140 coaA CDS COG1072 4358707 4359657 - [H] Panthothenate kinase 2141 cds-NP_463014.1 CDS NA 4359866 4360039 - NA 2142 thrU tRNA NA 4360059 4360131 + NA tyrU tRNA NA 4360143 4360224 + NA glyT tRNA NA 4360344 4360415 + NA thrT tRNA NA 4360425 4360497 + NA 2143 tufB CDS COG0050 4360616 4361800 + [J] GTPases - translation elongation factors secE CDS COG0690 4362030 4362413 + [U] Preprotein translocase subunit SecE nusG CDS COG0250 4362415 4362960 + [K] Transcription antiterminator rplK CDS COG0080 4363118 4363546 + [J] Ribosomal protein L11 rplA CDS COG0081 4363550 4364254 + [J] Ribosomal protein L1 rplJ CDS COG0244 4364674 4365171 + [J] Ribosomal protein L10 rplL CDS COG0222 4365238 4365603 + [J] Ribosomal protein L7/L12 rpoB CDS COG0085 4365921 4369949 + [K] DNA-directed RNA polymerase, beta subunit/140 kD rpoC CDS COG0086 4370026 4374249 + [K] DNA-directed RNA polymerase, beta' subunit/160 kD cds-NP_463024.1 CDS NA 4374291 4374614 + NA 2144 cds-NP_463025.1 CDS NA 4374620 4374964 - NA 2145 cds-NP_463026.1 CDS NA 4375363 4376373 + NA 2146 cds-NP_463027.1 CDS NA 4376696 4376884 + NA 2147 thiH CDS COG1060 4377035 4378168 - [HR] Thiamine biosynthesis enzyme ThiH and related thiG CDS COG2022 4378165 4378935 - [H] Uncharacterized enzyme of thiazole biosynthesis cds-NP_463030.1 CDS COG2104 4378937 4379137 - [H] Sulfur transfer protein involved in thiamine thiF CDS COG0476 4379118 4379876 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and thiE CDS COG0352 4379869 4380504 - [H] Thiamine monophosphate synthase thiC CDS COG0422 4380504 4382399 - [H] Thiamine biosynthesis protein ThiC 2148 rsd CDS COG3160 4382763 4383251 - [K] Regulator of sigma D 2149 yjaD CDS COG2816 4383344 4384117 + [L] NTP pyrophosphohydrolases containing a Zn-finger, probably hemE CDS COG0407 4384158 4385222 + [H] Uroporphyrinogen-III decarboxylase nfi CDS COG1515 4385232 4385903 + [L] Deoxyinosine 3'endonuclease (endonuclease V) yjaG CDS COG3068 4385945 4386535 + [S] Uncharacterized protein conserved in bacteria 2150 hupA CDS COG0776 4386722 4386994 + [L] Bacterial nucleoid DNA-binding protein yjaH CDS COG3042 4387006 4387698 + [R] Putative hemolysin 2151 zraP CDS COG3678 4387740 4388195 - [UNTP] P pilus assembly/Cpx signaling pathway, periplasmic 2152 hydH CDS COG0642 4388449 4389846 + [T] Signal transduction histidine kinase hydG CDS COG2204 4389852 4391177 + [T] Response regulator containing CheY-like receiver, AAA-type 2153 purD CDS COG0151 4391174 4392463 - [F] Phosphoribosylamine-glycine ligase purH CDS COG0138 4392475 4394064 - [F] AICAR transformylase/IMP cyclohydrolase PurH (only IMP 2154 rrsE rRNA NA 4394688 4396232 + NA gltV tRNA NA 4396316 4396388 + NA rrlE rRNA NA 4396624 4399617 + NA rrfE rRNA NA 4399810 4399931 + NA 2155 yjaB CDS COG0454 4400260 4400697 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2156 metA CDS COG1897 4400854 4401783 + [E] Homoserine trans-succinylase 2157 aceB CDS COG2225 4402052 4403653 + [C] Malate synthase aceA CDS COG2224 4403685 4404989 + [C] Isocitrate lyase aceK CDS COG4579 4405091 4406842 + [T] Isocitrate dehydrogenase kinase/phosphatase 2158 cds-NP_463051.1 CDS COG4405 4406806 4407213 - [S] Uncharacterized protein conserved in bacteria iclR CDS COG1414 4407224 4408048 - [K] Transcriptional regulator 2159 metH CDS COG1410 4408265 4412035 + [E] Methionine synthase I, cobalamin-binding domain 2160 yjbB CDS COG1283 4412302 4413933 + [P] Na+/phosphate symporter 2161 pepE CDS COG3340 4414009 4414698 - [E] Peptidase E 2162 cds-NP_463056.1 CDS COG3005 4414770 4414871 + [C] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c cds-NP_463057.1 CDS COG3122 4414906 4415445 + [S] Uncharacterized protein conserved in bacteria 2163 yjbC CDS COG1187 4415492 4416361 + [J] 16S rRNA uridine-516 pseudouridylate synthase and 2164 yjbD CDS NA 4416358 4416630 - NA 2165 cds-NP_463060.1 CDS COG0385 4416728 4417669 - [R] Predicted Na+-dependent transporter 2166 cds-NP_463061.1 CDS ROG0738 4417931 4418659 - NA 2167 cds-NP_463062.1 CDS NA 4418856 4419146 - NA 2168 cds-NP_463063.1 CDS ROG2588 4419395 4419850 - NA cds-NP_463064.1 CDS ROG2688 4419847 4420452 - NA cds-NP_463065.1 CDS COG5301 4420457 4422202 - [R] Phage-related tail fibre protein cds-NP_463066.1 CDS COG4385 4422205 4422837 - [R] Bacteriophage P2-related tail formation protein cds-NP_463067.1 CDS COG3948 4422830 4423945 - [R] Phage-related baseplate assembly protein cds-NP_463068.1 CDS COG3628 4423936 4424295 - [R] Phage baseplate assembly protein W 2169 cds-NP_463069.1 CDS NA 4424459 4426006 - NA cds-NP_463070.1 CDS COG0463 4426006 4426935 - [M] Glycosyltransferases involved in cell wall biogenesis cds-NP_463071.1 CDS COG2246 4426932 4427294 - [S] Predicted membrane protein 2170 cds-NP_463072.1 CDS COG4540 4427622 4428344 - [R] Phage P2 baseplate assembly protein gpV cds-NP_463073.1 CDS COG3500 4428354 4429397 - [R] Phage protein D cds-NP_463074.1 CDS COG5004 4429385 4429594 - [R] P2-like prophage tail protein X cds-NP_463075.1 CDS COG1463 4429594 4430547 - [Q] ABC-type transport system involved in resistance cds-NP_463076.1 CDS COG5283 4430547 4432901 - [S] Phage-related tail protein 2171 cds-NP_463077.1 CDS COG3498 4433455 4433979 - [R] Phage tail tube protein FII cds-NP_463078.1 CDS COG3497 4433979 4435406 - [R] Phage tail sheath protein FI cds-NP_463079.1 CDS NA 4435396 4435593 - NA cds-NP_463080.1 CDS NA 4435590 4436045 - NA 2172 cds-NP_463081.1 CDS ROG6607 4436205 4436519 - NA cds-NP_463082.1 CDS COG0741 4436532 4437137 - [M] Soluble lytic murein transglycosylase and related cds-NP_463083.1 CDS ROG6267 4437140 4437427 - NA 2173 cds-NP_463084.3 CDS COG5566 4438147 4438350 + [S] Uncharacterized conserved protein 2174 lysC CDS COG0527 4438483 4439832 - [E] Aspartokinases 2175 pgi CDS COG0166 4440177 4441826 + [G] Glucose-6-phosphate isomerase 2176 yjbE CDS NA 4442267 4442512 + NA yjbF CDS ROG4342 4442546 4443214 + NA yjbG CDS ROG0647 4443211 4443948 + NA yjbH CDS ROG0647 4443948 4446044 + NA 2177 yjbA CDS COG3223 4446187 4446597 + [S] Predicted membrane protein 2178 malG CDS COG3833 4446763 4447653 - [G] ABC-type maltose transport systems, permease component malF CDS COG1175 4447668 4449212 - [G] ABC-type sugar transport systems, permease components malE CDS COG2182 4449344 4450543 - [G] Maltose-binding periplasmic proteins/domains 2179 malK CDS COG3839 4450896 4452005 + [G] ABC-type sugar transport systems, ATPase components lamB CDS COG4580 4452094 4453452 + [G] Maltoporin (phage lambda and maltose receptor) 2180 malM CDS ROG8131 4453616 4454533 + NA 2181 ubiC CDS COG3161 4454714 4455211 + [H] 4-hydroxybenzoate synthetase (chorismate lyase) ubiA CDS COG0382 4455225 4456097 + [H] 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 2182 plsB CDS COG2937 4456196 4458616 - [I] Glycerol-3-phosphate O-acyltransferase 2183 dgkA CDS COG0818 4458787 4459155 + [M] Diacylglycerol kinase 2184 lexA CDS COG1974 4459264 4459872 + [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 2185 dinF CDS COG0534 4460051 4461376 + [V] Na+-driven multidrug efflux pump cds-NP_463104.1 CDS NA 4461373 4461486 + NA yjbJ CDS COG3237 4461505 4461717 + [S] Uncharacterized protein conserved in bacteria 2186 zur CDS COG0735 4461816 4462331 - [P] Fe2+/Zn2+ uptake regulation proteins 2187 cds-NP_463107.1 CDS ROG7083 4462578 4463888 + NA 2188 yjbN CDS COG0042 4463976 4464974 + [J] tRNA-dihydrouridine synthase 2189 yjbO CDS NA 4465142 4465384 + NA 2190 qor CDS COG0604 4465559 4466542 - [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 2191 dnaB CDS COG0305 4466607 4468022 + [L] Replicative DNA helicase alr CDS COG0787 4468054 4469133 + [M] Alanine racemase 2192 tyrB CDS COG1448 4469319 4470512 + [E] Aspartate/tyrosine/aromatic aminotransferase 2193 aphA CDS COG3700 4470699 4471412 + [R] Acid phosphatase (class B) 2194 yjbQ CDS COG0432 4471541 4471957 + [S] Uncharacterized conserved protein yjbR CDS COG2315 4471960 4472316 + [S] Uncharacterized protein conserved in bacteria 2195 cds-NP_463117.1 CDS ROG6956 4472317 4472655 - NA cds-NP_463118.1 CDS NA 4472642 4473097 - NA 2196 uvrA CDS COG0178 4473229 4476054 - [L] Excinuclease ATPase subunit 2197 cds-NP_463120.1 CDS NA 4476019 4476135 + NA 2198 ssb CDS COG0629 4476302 4476832 + [L] Single-stranded DNA-binding protein 2199 cds-NP_463122.1 CDS NA 4477873 4478505 + NA cds-NP_463123.1 CDS ROG0045 4478502 4479890 + NA cds-NP_463124.1 CDS ROG4929 4479880 4481199 + NA cds-NP_463125.1 CDS ROG4364 4481196 4482473 + NA cds-NP_463126.1 CDS ROG0453 4482490 4499169 + NA cds-NP_463127.1 CDS COG2274 4499209 4501275 + [V] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal 2200 yjcB CDS NA 4501553 4501834 - NA 2201 yjcC CDS COG4943 4502397 4503998 + [T] Predicted signal transduction protein containing sensor 2202 soxS CDS COG2207 4503986 4504309 - [K] AraC-type DNA-binding domain-containing proteins 2203 soxR CDS COG0789 4504396 4504854 + [K] Predicted transcriptional regulators 2204 cds-NP_463132.1 CDS COG0625 4505147 4505815 + [O] Glutathione S-transferase 2205 yjcD CDS COG2252 4506162 4507511 + [R] Permeases 2206 yjcE CDS COG0025 4507661 4509307 + [P] NhaP-type Na+/H+ and K+/H+ antiporters 2207 cds-NP_463135.1 CDS COG0583 4509402 4510289 - [K] Transcriptional regulator 2208 cds-NP_463136.1 CDS COG1380 4510393 4510803 + [R] Putative effector of murein hydrolase LrgA cds-NP_463137.1 CDS COG1346 4510796 4511485 + [M] Putative effector of murein hydrolase 2209 yjcG CDS COG4147 4511524 4513173 - [R] Predicted symporter yjcH CDS COG3162 4513170 4513484 - [S] Predicted membrane protein 2210 acs CDS COG0365 4513730 4515688 - [I] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 2211 cds-NP_463141.1 CDS NA 4515875 4516021 + NA 2212 nrfA CDS COG3303 4516120 4517556 + [P] Formate-dependent nitrite reductase, periplasmic cytochrome c552 nrfB CDS ROG7294 4517581 4518234 + NA nrfC CDS COG0437 4518231 4518902 + [C] Fe-S-cluster-containing hydrogenase components 1 nrfD CDS COG3301 4518899 4519855 + [P] Formate-dependent nitrite reductase, membrane component nrfE CDS COG1138 4519848 4522070 + [O] Cytochrome c biogenesis factor nrfG CDS COG4235 4522067 4522687 + [O] Cytochrome c biogenesis factor 2213 gltP CDS COG1301 4523032 4524342 + [C] Na+/H+-dicarboxylate symporters 2214 yjcO CDS COG0790 4524500 4525189 - [R] FOG: TPR repeat, SEL1 subfamily 2215 fdhF CDS COG0243 4525366 4527513 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing 2216 lpxO CDS COG3555 4527868 4528776 - [O] Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases 2217 phnO CDS COG0454 4529034 4529498 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2218 phnB CDS COG2764 4529620 4530063 - [S] Uncharacterized protein conserved in bacteria phnA CDS COG2824 4530183 4530518 - [P] Uncharacterized Zn-ribbon-containing protein involved in phosphonate 2219 proP CDS COG0477 4530986 4532488 + [GEPR] Permeases of the major facilitator superfamily 2220 basS CDS COG0642 4532655 4533725 - [T] Signal transduction histidine kinase basR CDS COG0745 4533735 4534403 - [TK] Response regulators consisting of a CheY-like yjdB CDS COG2194 4534400 4536043 - [R] Predicted membrane-associated, metal-dependent hydrolase 2221 yjdE CDS COG0531 4536177 4537514 - [E] Amino acid transporters 2222 adiY CDS COG2207 4537654 4538415 - [K] AraC-type DNA-binding domain-containing proteins 2223 adi CDS COG1982 4538713 4540983 - [E] Arginine/lysine/ornithine decarboxylases 2224 melR CDS COG2207 4541213 4542145 - [K] AraC-type DNA-binding domain-containing proteins 2225 melA CDS COG1486 4542414 4543769 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases melB CDS COG2211 4543853 4545283 + [G] Na+/melibiose symporter and related transporters 2226 fumB CDS COG1951 4545381 4547027 - [C] Tartrate dehydratase alpha subunit/Fumarate hydratase class dcuB CDS COG2704 4547123 4548463 - [R] Anaerobic C4-dicarboxylate transporter 2227 cds-NP_463167.1 CDS NA 4548610 4548876 - NA 2228 dcuR CDS COG4565 4549193 4549912 - [KT] Response regulator of citrate/malate metabolism dcuS CDS COG3290 4549909 4551540 - [T] Signal transduction histidine kinase regulating citrate/malate 2229 cds-NP_463170.3 CDS COG0243 4551974 4554325 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing cds-NP_463171.1 CDS COG0437 4554339 4554965 + [C] Fe-S-cluster-containing hydrogenase components 1 cds-NP_463172.1 CDS COG3302 4554958 4555731 + [R] DMSO reductase anchor subunit cds-NP_463173.1 CDS COG3381 4555747 4556400 + [R] Uncharacterized component of anaerobic dehydrogenases 2230 cds-NP_463174.1 CDS NA 4556484 4557884 - NA 2231 cds-NP_463175.1 CDS COG3204 4558188 4559093 + [S] Uncharacterized protein conserved in bacteria 2232 tnpA_6 CDS COG1943 4559432 4559890 + [L] Transposase and inactivated derivatives 2233 cds-NP_463177.1 CDS NA 4560099 4560368 - NA cds-NP_463178.1 CDS NA 4560376 4560591 - NA cds-NP_463179.3 CDS NA 4560614 4560901 - NA cds-NP_463180.1 CDS COG2207 4560898 4561773 - [K] AraC-type DNA-binding domain-containing proteins 2234 cds-NP_463181.1 CDS NA 4562038 4562259 - NA 2235 cds-NP_463182.1 CDS COG4453 4562576 4562869 + [S] Uncharacterized protein conserved in bacteria cds-NP_463183.1 CDS COG0454 4562866 4563357 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2236 phoN CDS COG0671 4563605 4564357 - [I] Membrane-associated phospholipid phosphatase 2237 EthD CDS ROG5885 4565566 4565943 - NA 2238 cds-NP_463185.1 CDS COG0789 4566015 4566347 + [K] Predicted transcriptional regulators 2239 pheR tRNA NA 4566593 4566665 - NA 2240 yjdC CDS ROG3002 4566786 4567361 - NA dsbD CDS COG4232 4567398 4569101 - [OC] Thiol:disulfide interchange protein cutA CDS COG1324 4569077 4569424 - [P] Uncharacterized protein involved in tolerance to 2241 dcuA CDS COG2704 4569545 4570846 - [R] Anaerobic C4-dicarboxylate transporter aspA CDS COG1027 4570961 4572397 - [E] Aspartate ammonia-lyase 2242 fxsA CDS COG3030 4572699 4573214 + [R] Protein affecting phage T7 exclusion by 2243 yjeH CDS COG0531 4573273 4574514 - [E] Amino acid transporters 2244 mopB CDS COG0234 4574790 4575083 + [O] Co-chaperonin GroES (HSP10) mopA CDS COG0459 4575127 4576773 + [O] Chaperonin GroEL (HSP60 family) 2245 yjeI CDS ROG5059 4577017 4577370 + NA 2246 yjeJ CDS NA 4577418 4578275 - NA 2247 yjeK CDS COG1509 4578557 4579585 - [E] Lysine 2,3-aminomutase 2248 efp CDS COG0231 4579626 4580192 + [J] Translation elongation factor P (EF-P)/translation initiation ecnA CDS COG5510 4580253 4580387 + [S] Predicted small secreted protein ecnB CDS COG5510 4580495 4580641 + [S] Predicted small secreted protein 2249 ecnR CDS COG2197 4580672 4581259 - [TK] Response regulator containing a CheY-like receiver 2250 sugE CDS COG2076 4581516 4581833 + [P] Membrane transporters of cations and cationic 2251 blc CDS COG3040 4581850 4582383 - [M] Bacterial lipocalin frdD CDS COG3080 4582495 4582854 - [C] Fumarate reductase subunit D frdC CDS COG3029 4582865 4583260 - [C] Fumarate reductase subunit C frdB CDS COG0479 4583271 4584005 - [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit frdA CDS COG1053 4583998 4585788 - [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 2252 yjeA CDS COG2269 4586111 4587088 + [J] Truncated, possibly inactive, lysyl-tRNA synthetase (class 2253 yjeM CDS COG0531 4587314 4588816 + [E] Amino acid transporters yjeO CDS COG4615 4588868 4589182 + [QP] ABC-type siderophore export system, fused ATPase 2254 yjeP CDS COG3264 4589249 4592575 - [M] Small-conductance mechanosensitive channel psd CDS COG0688 4592594 4593562 - [I] Phosphatidylserine decarboxylase 2255 yjeQ CDS COG1162 4593654 4594730 - [R] Predicted GTPases 2256 orn CDS COG1949 4594813 4595358 + [A] Oligoribonuclease (3'->5' exoribonuclease) 2257 cds-NP_463215.3 CDS COG0834 4595420 4596160 - [ET] ABC-type amino acid transport/signal transduction systems, 2258 glyV tRNA NA 4596428 4596500 + NA glyX tRNA NA 4596660 4596732 + NA glyY tRNA NA 4596892 4596964 + NA 2259 yjeS CDS COG1600 4597245 4598399 - [C] Uncharacterized Fe-S protein 2260 yjeF CDS COG0063 4598383 4599930 + [G] Predicted sugar kinase yjeE CDS COG0802 4599902 4600363 + [R] Predicted ATPase or kinase amiB CDS COG0860 4600380 4601699 + [M] N-acetylmuramoyl-L-alanine amidase mutL CDS COG0323 4601709 4603565 + [L] DNA mismatch repair enzyme (predicted ATPase) miaA CDS COG0324 4603558 4604508 + [J] tRNA delta(2)-isopentenylpyrophosphate transferase hfq CDS COG1923 4604591 4604899 + [R] Uncharacterized host factor I protein hflX CDS COG2262 4604971 4606251 + [R] GTPases hflK CDS COG0330 4606466 4607725 + [O] Membrane protease subunits, stomatin/prohibitin homologs hflC CDS COG0330 4607728 4608732 + [O] Membrane protease subunits, stomatin/prohibitin homologs 2261 yjeT CDS COG3242 4608811 4609008 + [S] Uncharacterized protein conserved in bacteria 2262 purA CDS COG0104 4609111 4610409 + [F] Adenylosuccinate synthase 2263 yjeB CDS COG1959 4610616 4611041 + [K] Predicted transcriptional regulator vacB CDS COG0557 4611079 4613517 + [K] Exoribonuclease R yjfH CDS COG0566 4613608 4614339 + [J] rRNA methylases 2264 yjfI CDS COG3789 4614471 4614875 + [S] Uncharacterized protein conserved in bacteria yjfJ CDS COG1842 4614890 4615588 + [KT] Phage shock protein A (IM30), suppresses cds-NP_463233.1 CDS COG1226 4615588 4616658 + [P] Kef-type K+ transport systems, predicted NAD-binding yjfK CDS ROG3524 4616631 4617314 + NA yjfL CDS COG3766 4617332 4617730 + [S] Predicted membrane protein yjfM CDS COG5463 4617740 4618378 + [S] Predicted integral membrane protein yjfC CDS COG0754 4618381 4619544 + [E] Glutathionylspermidine synthase 2265 aidB CDS COG1960 4619629 4621251 + [I] Acyl-CoA dehydrogenases 2266 yjfN CDS ROG1694 4621296 4621616 - NA 2267 yjfO CDS COG3218 4621702 4622031 - [R] ABC-type uncharacterized transport system, auxiliary component 2268 yjfP CDS COG1073 4622215 4622964 + [R] Hydrolases of the alpha/beta superfamily 2269 yjfQ CDS COG1349 4622961 4623716 - [KG] Transcriptional regulators of sugar metabolism yjfR CDS COG2220 4623821 4624885 - [R] Predicted Zn-dependent hydrolases of the beta-lactamase 2270 sgaT CDS COG3037 4625215 4626645 + [S] Uncharacterized protein conserved in bacteria sgaB CDS COG3414 4626661 4626966 + [G] Phosphotransferase system, galactitol-specific IIB component ptxA CDS COG1762 4626976 4627440 + [GT] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) sgaH CDS COG0269 4627454 4628104 + [G] 3-hexulose-6-phosphate synthase and related proteins sgaU CDS COG3623 4628114 4628968 + [G] Putative L-xylulose-5-phosphate 3-epimerase sgaE CDS COG0235 4628968 4629654 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and 2271 yjfY CDS NA 4629783 4630058 - NA 2272 cds-NP_463251.1 CDS NA 4630252 4630458 + NA 2273 rpsF CDS COG0360 4630529 4630924 + [J] Ribosomal protein S6 priB CDS COG2965 4630931 4631245 + [L] Primosomal replication protein N rpsR CDS COG0238 4631250 4631477 + [J] Ribosomal protein S18 rplI CDS COG0359 4631519 4631968 + [J] Ribosomal protein L9 2274 yifZ CDS COG0697 4632116 4633042 + [GER] Permeases of the drug/metabolite transporter (DMT) 2275 ytfB CDS COG3061 4633092 4633727 - [M] Cell envelope opacity-associated protein A 2276 fklB CDS COG0545 4633905 4634567 + [O] FKBP-type peptidyl-prolyl cis-trans isomerases 1 2277 cycA CDS COG1113 4634863 4636272 + [E] Gamma-aminobutyrate permease and related permeases 2278 ytfE CDS COG2846 4636384 4637046 - [D] Regulator of cell morphogenesis and NO 2279 ytfF CDS COG0697 4637149 4638114 - [GER] Permeases of the drug/metabolite transporter (DMT) 2280 ytfG CDS COG0702 4638195 4639043 - [MG] Predicted nucleoside-diphosphate-sugar epimerases 2281 ytfH CDS COG1733 4639131 4639517 + [K] Predicted transcriptional regulators 2282 cpdB CDS COG0737 4639575 4641518 - [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 2283 cysQ CDS COG1218 4641786 4642526 + [P] 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 2284 ytfJ CDS COG3054 4642516 4643073 - [R] Predicted transcriptional regulator 2285 ytfK CDS ROG6034 4643334 4643606 + NA 2286 ytfL CDS COG1253 4643691 4645034 - [R] Hemolysins and related proteins containing CBS 2287 msrA CDS COG0225 4645217 4645855 - [O] Peptide methionine sulfoxide reductase 2288 ytfM CDS COG0729 4646068 4647801 + [M] Outer membrane protein ytfN CDS COG2911 4647798 4651577 + [S] Uncharacterized protein conserved in bacteria ytfP CDS COG2105 4651580 4651924 + [S] Uncharacterized conserved protein 2289 cds-NP_463273.1 CDS ROG2472 4651978 4653186 - NA cds-NP_463274.1 CDS COG3964 4653183 4654346 - [R] Predicted amidohydrolase 2290 ppa CDS COG0221 4654756 4655286 - [C] Inorganic pyrophosphatase fbp CDS COG0158 4655513 4656511 - [G] Fructose-1,6-bisphosphatase 2291 mpl CDS COG0773 4656686 4658065 + [M] UDP-N-acetylmuramate-alanine ligase 2292 cds-NP_463278.1 CDS COG1737 4658556 4659389 + [K] Transcriptional regulators 2293 cds-NP_463279.1 CDS COG0477 4659440 4660873 - [GEPR] Permeases of the major facilitator superfamily 2294 cds-NP_463280.1 CDS COG0477 4661332 4662768 + [GEPR] Permeases of the major facilitator superfamily 2295 cds-NP_463281.1 CDS COG3718 4663121 4663930 - [G] Uncharacterized enzyme involved in inositol metabolism cds-NP_463282.1 CDS COG1012 4663955 4665460 - [C] NAD-dependent aldehyde dehydrogenases cds-NP_453693.1 CDS NA 4665476 4665778 - NA 2296 cds-NP_463284.1 CDS COG2207 4665901 4666725 + [K] AraC-type DNA-binding domain-containing proteins 2297 cds-NP_463285.3 CDS COG1082 4666985 4667905 + [G] Sugar phosphate isomerases/epimerases cds-NP_463286.1 CDS COG0673 4667924 4668934 + [R] Predicted dehydrogenases and related proteins 2298 srfJ CDS COG5520 4669031 4670374 + [M] O-Glycosyl hydrolase cds-NP_463288.1 CDS COG1082 4670375 4671208 + [G] Sugar phosphate isomerases/epimerases 2299 cds-NP_463289.1 CDS ROG7406 4671205 4672371 - NA cds-NP_453701.1 CDS COG3892 4672432 4674369 - [S] Uncharacterized protein conserved in bacteria 2300 cds-NP_453700.1 CDS COG3892 4672432 4673232 - [S] Uncharacterized protein conserved in bacteria 2301 cds-NP_453702.1 CDS COG3962 4674786 4676726 + [E] Acetolactate synthase cds-NP_453703.1 CDS COG3962 4675917 4676726 + [E] Acetolactate synthase cds-NP_463294.1 CDS COG0673 4676907 4677929 + [R] Predicted dehydrogenases and related proteins cds-NP_463295.1 CDS COG0477 4678002 4679228 + [GEPR] Permeases of the major facilitator superfamily 2302 cds-NP_463296.1 CDS COG4130 4679389 4680204 + [G] Predicted sugar epimerase cds-NP_463297.1 CDS COG1082 4680257 4681141 + [G] Sugar phosphate isomerases/epimerases 2303 yjgA CDS COG3028 4681197 4681748 - [S] Uncharacterized protein conserved in bacteria 2304 pmbA CDS COG0312 4681844 4683196 + [R] Predicted Zn-dependent proteases and their inactivated 2305 cybC CDS COG3783 4683295 4683681 + [C] Soluble cytochrome b562 2306 cds-NP_463301.1 CDS ROG7495 4683959 4684297 + NA cds-NP_463302.1 CDS ROG8490 4684308 4684670 + NA cds-NP_463303.1 CDS ROG6603 4684670 4684972 + NA cds-NP_463304.1 CDS ROG6269 4684995 4685771 + NA cds-NP_463305.1 CDS ROG6245 4685783 4686427 + NA cds-NP_463306.1 CDS COG3964 4686486 4687619 + [R] Predicted amidohydrolase cds-NP_463307.1 CDS COG1921 4687603 4688721 + [E] Selenocysteine synthase [seryl-tRNASer selenium transferase] cds-NP_463308.2 CDS ROG1892 4688718 4689458 + NA cds-NP_463309.1 CDS COG3711 4689475 4691388 + [K] Transcriptional antiterminator 2307 cds-NP_463310.1 CDS COG3077 4691466 4691708 + [L] DNA-damage-inducible protein J cds-NP_463311.1 CDS COG2026 4691698 4691982 + [JD] Cytotoxic translational repressor of toxin-antitoxin stability 2308 nrdG CDS COG0602 4691986 4692450 - [O] Organic radical activating enzymes nrdD CDS COG1328 4692571 4694709 - [F] Oxygen-sensitive ribonucleoside-triphosphate reductase 2309 treC CDS COG0366 4695118 4696770 - [G] Glycosidases 2310 treR CDS COG1609 4698375 4699322 - [K] Transcriptional regulators 2311 mgtA CDS COG0474 4699706 4702414 + [P] Cation transport ATPase 2312 cds-NP_463317.1 CDS ROG2040 4702530 4702976 - NA 2313 yjgF CDS COG0251 4703051 4703437 - [J] Putative translation initiation inhibitor, yjgF family pyrI CDS COG1781 4703514 4703975 - [F] Aspartate carbamoyltransferase, regulatory subunit pyrB CDS COG0540 4703988 4704923 - [F] Aspartate carbamoyltransferase, catalytic chain pyrL CDS NA 4704959 4705060 - NA 2314 yjgG CDS NA 4705040 4705180 + NA 2315 cds-NP_463323.1 CDS COG1438 4705150 4705638 - [K] Arginine repressor cds-NP_463324.1 CDS COG1288 4705825 4707228 - [S] Predicted membrane protein cds-NP_463325.1 CDS COG0078 4707284 4708288 - [E] Ornithine carbamoyltransferase cds-NP_463326.1 CDS COG0549 4708400 4709332 - [E] Carbamate kinase cds-NP_463327.1 CDS COG2235 4709343 4710563 - [E] Arginine deiminase 2316 yjgK CDS COG2731 4711239 4711691 + [G] Beta-galactosidase, beta subunit 2317 argI CDS COG0078 4711765 4712769 - [E] Ornithine carbamoyltransferase 2318 yjgD CDS COG3076 4712935 4713351 + [S] Uncharacterized protein conserved in bacteria miaE CDS COG4445 4713363 4714175 + [FJ] Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in 2319 ytgA CDS ROG1952 4714409 4714897 - NA 2320 yjgM CDS COG0454 4715004 4715507 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2321 yjgN CDS COG4269 4715702 4716889 + [S] Predicted membrane protein 2322 valS CDS COG0525 4717031 4719886 - [J] Valyl-tRNA synthetase holC CDS COG2927 4719886 4720368 - [L] DNA polymerase III, chi subunit pepA CDS COG0260 4720466 4721977 - [E] Leucyl aminopeptidase cds-NP_463338.1 CDS NA 4722021 4722140 - NA 2323 yjgP CDS COG0795 4722372 4723472 + [R] Predicted permeases yjgQ CDS COG0795 4723472 4724554 + [R] Predicted permeases 2324 idnR CDS COG1609 4724749 4725747 - [K] Transcriptional regulators idnT CDS COG2610 4725811 4727130 - [GE] H+/gluconate symporter and related permeases 2325 idnO CDS COG1028 4727192 4727956 - [IQR] Dehydrogenases with different specificities (related to idnD CDS COG1063 4727981 4729012 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 2326 idnK CDS COG3265 4729229 4729759 + [G] Gluconate kinase 2327 yjgB CDS COG1064 4729787 4730806 - [R] Zn-dependent alcohol dehydrogenases 2328 leuX tRNA NA 4731014 4731095 + NA 2329 cds-NP_463347.1 CDS COG0582 4731332 4731619 + [L] Integrase 2330 cds-NP_463348.1 CDS COG1112 4731981 4735496 + [L] Superfamily I DNA and RNA helicases 2331 cds-NP_463349.1 CDS COG4127 4735593 4736582 + [S] Uncharacterized conserved protein 2332 cds-NP_463350.1 CDS COG4930 4736695 4738779 - [O] Predicted ATP-dependent Lon-type protease cds-NP_463351.1 CDS ROG0323 4738790 4741387 - NA cds-NP_463352.1 CDS NA 4741390 4742211 - NA cds-NP_463353.1 CDS COG1120 4742189 4743280 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components cds-NP_463354.1 CDS COG1002 4743280 4746957 - [V] Type II restriction enzyme, methylase subunits cds-NP_463355.1 CDS ROG0343 4747003 4750644 - NA cds-NP_463356.1 CDS ROG0690 4750656 4751258 - NA cds-NP_463357.1 CDS ROG1550 4751255 4751857 - NA 2333 yeeN CDS COG0217 4752683 4753408 - [S] Uncharacterized conserved protein 2334 yjhP CDS COG0500 4753959 4755590 - [QR] SAM-dependent methyltransferases cds-NP_463360.1 CDS COG3811 4755595 4755852 - [S] Uncharacterized protein conserved in bacteria 2335 cds-NP_463361.1 CDS COG4332 4756341 4756949 + [S] Uncharacterized protein conserved in bacteria 2336 cds-NP_463362.1 CDS ROG8287 4757459 4758196 + NA 2337 cds-NP_463363.1 CDS ROG4701 4758472 4759383 + NA 2338 cds-NP_463364.1 CDS COG3439 4759588 4760049 + [S] Uncharacterized conserved protein 2339 cds-NP_463365.1 CDS COG0412 4760046 4760720 - [Q] Dienelactone hydrolase and related enzymes 2340 uxuR CDS COG2186 4761070 4761843 + [K] Transcriptional regulators 2341 trpS2 CDS COG0180 4761844 4762857 - [J] Tryptophanyl-tRNA synthetase 2342 cds-NP_463368.3 CDS COG3157 4763575 4764105 + [S] Hemolysin-coregulated protein (uncharacterized) 2343 cds-NP_463369.1 CDS COG1794 4764344 4765078 + [M] Aspartate racemase 2344 yjiE CDS COG0583 4765084 4765992 - [K] Transcriptional regulator 2345 iadA CDS COG0044 4766111 4767283 - [F] Dihydroorotase and related cyclic amidohydrolases yjiG CDS COG0700 4767296 4767757 - [S] Uncharacterized membrane protein yjiH CDS COG3314 4767754 4768638 - [S] Uncharacterized protein conserved in bacteria 2346 yjiJ CDS NA 4769298 4770482 - NA 2347 yjiN CDS COG2733 4770702 4771973 - [S] Predicted membrane protein 2348 yjiO CDS COG0477 4772060 4773301 - [GEPR] Permeases of the major facilitator superfamily 2349 cds-NP_463377.1 CDS COG5464 4773780 4774295 + [S] Uncharacterized conserved protein 2350 cds-NP_463378.1 CDS COG1012 4774476 4775846 + [C] NAD-dependent aldehyde dehydrogenases 2351 cds-NP_463379.1 CDS NA 4775941 4776084 - NA 2352 yjiS CDS COG5457 4776051 4776215 + [S] Uncharacterized conserved small protein 2353 cds-NP_463381.1 CDS NA 4776290 4776991 - NA 2354 yjiW CDS COG2336 4777065 4777397 - [T] Growth regulator 2355 hsdS CDS COG0732 4777624 4779033 - [V] Restriction endonuclease S subunits hsdM CDS COG0286 4779030 4780619 - [V] Type I restriction-modification system methyltransferase subunit hsdR CDS COG4096 4780777 4784286 - [V] Type I site-specific restriction-modification system, R 2356 mrr CDS COG1715 4784484 4785398 + [V] Restriction endonuclease 2357 cds-NP_463387.1 CDS COG2929 4785667 4785954 + [S] Uncharacterized protein conserved in bacteria cds-NP_463388.1 CDS COG3514 4785941 4786243 + [S] Uncharacterized protein conserved in bacteria 2358 yjiA CDS COG0523 4786318 4787274 - [R] Putative GTPases (G3E family) yjiX CDS COG2879 4787285 4787488 - [S] Uncharacterized small protein yjiY CDS COG1966 4787583 4789733 - [T] Carbon starvation protein, predicted membrane protein 2359 tsr CDS COG0840 4790100 4791761 + [NT] Methyl-accepting chemotaxis protein 2360 cds-NP_463393.1 CDS COG3933 4792085 4794850 + [K] Transcriptional antiterminator cds-NP_463394.1 CDS COG2893 4794952 4795374 + [G] Phosphotransferase system, mannose/fructose-specific component IIA cds-NP_463395.1 CDS COG3444 4795389 4795850 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB cds-NP_463396.1 CDS COG3715 4795876 4796655 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC cds-NP_463397.1 CDS COG3716 4796645 4797481 + [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID cds-NP_463398.1 CDS COG2222 4797494 4798555 + [M] Predicted phosphosugar isomerases cds-NP_463399.3 CDS COG2222 4798552 4799583 + [M] Predicted phosphosugar isomerases 2361 mdoB CDS COG1368 4799717 4801969 - [M] Phosphoglycerol transferase and related proteins, alkaline 2362 yjjA CDS ROG6913 4802291 4802752 - NA dnaC CDS COG1484 4802810 4803547 - [L] DNA replication protein dnaT CDS COG5529 4803550 4804089 - [R] Pyocin large subunit 2363 cds-NP_463404.1 CDS COG3610 4804182 4804655 - [S] Uncharacterized conserved protein yjjP CDS COG2966 4804646 4805557 - [S] Uncharacterized conserved protein 2364 yjjQ CDS NA 4806135 4806860 + NA bglJ CDS COG2771 4806821 4807495 + [K] DNA-binding HTH domain-containing proteins 2365 cds-NP_463408.1 CDS COG2606 4807546 4808004 - [S] Uncharacterized conserved protein 2366 fhuF CDS COG4114 4808155 4808943 - [R] Uncharacterized Fe-S protein 2367 cds-NP_463410.1 CDS COG3706 4809064 4810128 - [T] Response regulator containing a CheY-like receiver 2368 cds-NP_463411.1 CDS NA 4810379 4810615 + NA 2369 leuV tRNA NA 4810631 4810714 - NA leuP tRNA NA 4810749 4810832 - NA leuQ tRNA NA 4810863 4810946 - NA 2370 rsmC CDS COG2813 4811156 4812184 - [J] 16S RNA G1207 methylase RsmC 2371 holD CDS COG3050 4812287 4812724 + [L] DNA polymerase III, psi subunit rimI CDS COG0456 4812669 4813115 + [R] Acetyltransferases yjjG CDS COG1011 4813134 4813814 + [R] Predicted hydrolase (HAD superfamily) 2372 prfC CDS COG4108 4813906 4815495 + [J] Peptide chain release factor RF-3 2373 osmY CDS COG2823 4815897 4816514 + [R] Predicted periplasmic or secreted lipoprotein 2374 cds-NP_463418.1 CDS COG5487 4816625 4816804 + [S] Small integral membrane protein 2375 yjjU CDS COG4667 4816928 4818001 + [R] Predicted esterase of the alpha-beta hydrolase yjjV CDS COG0084 4817998 4818771 + [L] Mg-dependent DNase 2376 yjjW CDS COG1180 4818804 4819667 - [O] Pyruvate-formate lyase-activating enzyme yjjI CDS ROG2003 4819639 4821189 - NA 2377 deoC CDS COG0274 4821431 4822228 + [F] Deoxyribose-phosphate aldolase deoA CDS COG0213 4822352 4823674 + [F] Thymidine phosphorylase deoB CDS COG1015 4823726 4824949 + [G] Phosphopentomutase deoD CDS COG0813 4825159 4825878 + [F] Purine-nucleoside phosphorylase 2378 cds-NP_463427.1 CDS NA 4825916 4826488 - NA stjB CDS COG3188 4826485 4828893 - [NU] P pilus assembly protein, porin PapC stjC CDS COG3121 4828907 4829614 - [NU] P pilus assembly protein, chaperone PapD cds-NP_463430.1 CDS COG3539 4829692 4830381 - [NU] P pilus assembly protein, pilin FimA cds-NP_463431.1 CDS NA 4830429 4831118 - NA 2379 lplA CDS COG0095 4831431 4832447 - [H] Lipoate-protein ligase A smp CDS COG3726 4832481 4833125 - [R] Uncharacterized membrane protein affecting hemolysin expression 2380 serB CDS COG0560 4833242 4834210 + [E] Phosphoserine phosphatase radA CDS COG1066 4834294 4835676 + [O] Predicted ATP-dependent serine protease 2381 nadR CDS COG3172 4835827 4837059 + [H] Predicted ATPase/kinase involved in NAD metabolism 2382 yjjK CDS COG0488 4837177 4838844 - [R] ATPase components of ABC transporters with 2383 slt CDS COG0741 4839017 4840990 + [M] Soluble lytic murein transglycosylase and related 2384 trpR CDS COG2973 4841048 4841374 + [K] Trp operon repressor 2385 yjjX CDS COG1986 4841476 4841991 - [S] Uncharacterized conserved protein 2386 gpmB CDS COG0406 4842040 4842687 + [G] Fructose-2,6-bisphosphatase 2387 rob CDS COG2207 4842684 4843553 - [K] AraC-type DNA-binding domain-containing proteins 2388 creA CDS COG3045 4843765 4844238 + [S] Uncharacterized protein conserved in bacteria creB CDS COG0745 4844251 4844940 + [TK] Response regulators consisting of a CheY-like creC CDS COG2205 4844940 4846364 + [T] Osmosensitive K+ channel histidine kinase creD CDS COG4452 4846422 4847771 + [V] Inner membrane protein involved in colicin 2389 sthE CDS COG3539 4847829 4848914 - [NU] P pilus assembly protein, pilin FimA sthD CDS COG3539 4848955 4849512 - [NU] P pilus assembly protein, pilin FimA sthB CDS COG3188 4849530 4852067 - [NU] P pilus assembly protein, porin PapC sthA CDS COG3121 4852113 4852796 - [NU] P pilus assembly protein, chaperone PapD cds-NP_463451.1 CDS COG3539 4852867 4853412 - [NU] P pilus assembly protein, pilin FimA 2390 cds-NP_463452.1 CDS NA 4853751 4854422 - NA 2391 cds-NP_463453.1 CDS COG3539 4854807 4855121 - [NU] P pilus assembly protein, pilin FimA 2392 arcA CDS COG0745 4855388 4856104 - [TK] Response regulators consisting of a CheY-like 2393 yjjY CDS NA 4856200 4856340 + NA 2394 lasT CDS NA 4856740 4857426 + NA 2395 cds-NP_490493.1 CDS NA 94 378 + NA 2396 cds-NP_490494.1 CDS ROG7817 712 1155 + NA 2397 repC CDS NA 1334 1600 + NA 2398 repA3 CDS NA 1723 1845 + NA tap CDS NA 1850 1927 + NA repA CDS COG2340 1908 2789 + [S] Uncharacterized protein with SCP/PR1 domains 2399 cds-NP_490499.1 CDS COG3204 3730 3870 + [S] Uncharacterized protein conserved in bacteria 2400 srgC CDS COG2207 3967 4725 - [K] AraC-type DNA-binding domain-containing proteins 2401 rcK CDS COG3637 4992 5549 - [M] Opacity protein and related surface antigens 2402 srgB CDS COG3204 5639 6538 - [S] Uncharacterized protein conserved in bacteria 2403 srgA CDS COG1651 6671 7324 - [O] Protein-disulfide isomerase 2404 orf7 CDS COG2771 7569 7919 - [K] DNA-binding HTH domain-containing proteins pefI CDS COG4310 7904 8116 - [R] Uncharacterized protein conserved in bacteria with 2405 orf6 CDS NA 8548 9423 - NA 2406 orf5 CDS NA 9676 10233 - NA pefD CDS COG3121 10248 10940 - [NU] P pilus assembly protein, chaperone PapD pefC CDS COG3188 10933 13341 - [NU] P pilus assembly protein, porin PapC pefA CDS COG3539 13569 14087 - [NU] P pilus assembly protein, pilin FimA 2407 pefB CDS NA 14362 14664 - NA 2408 cds-NP_490512.1 CDS COG3111 15561 15764 + [S] Uncharacterized conserved protein 2409 repA2 CDS ROG1203 16636 17625 - NA 2410 cds-NP_490514.1 CDS NA 17369 17677 + NA 2411 cds-NP_490515.1 CDS NA 18119 18415 - NA 2412 cds-NP_490516.1 CDS ROG0320 18899 19420 - NA 2413 ccdA CDS COG5302 20096 20314 + [R] Post-segregation antitoxin (ccd killing mechanism protein) ccdB CDS ROG0946 20316 20621 + NA cds-NP_490519.1 CDS NA 20623 20913 + NA cds-NP_490520.1 CDS NA 20910 21431 + NA rsdB CDS COG4974 21466 22248 + [L] Site-specific recombinase XerD cds-NP_490522.1 CDS COG2200 22257 22808 + [T] FOG: EAL domain 2414 cds-NP_490523.1 CDS NA 23477 23962 + NA 2415 cds-NP_490524.1 CDS ROG3089 24682 25242 + NA 2416 spvD CDS COG0675 25309 25659 - [L] Transposase and inactivated derivatives 2417 cds-NP_490526.1 CDS COG1943 25877 26140 + [L] Transposase and inactivated derivatives 2418 spvD_2 CDS NA 26267 26917 - NA 2419 spvC CDS NA 27178 27903 - NA 2420 spvB CDS NA 28185 29960 - NA 2421 spvA CDS NA 30142 30909 - NA 2422 spvR CDS NA 31421 32314 - NA 2423 cds-NP_490532.1 CDS COG3335 32923 33960 + [L] Transposase and inactivated derivatives 2424 cds-NP_490533.1 CDS COG3267 34149 35174 - [U] Type II secretory pathway, component ExeA rlgA CDS NA 35107 36771 - NA cds-NP_490535.1 CDS COG1961 36755 37315 - [L] Site-specific recombinases, DNA invertase Pin homologs 2425 cds-NP_490536.1 CDS COG0288 37522 38262 - [P] Carbonic anhydrase 2426 cds-NP_490537.1 CDS NA 38917 39405 - NA 2427 tlpA CDS ROG1946 39664 40779 + NA 2428 cds-NP_490539.1 CDS COG0847 40865 41281 + [L] DNA polymerase III, epsilon subunit and 2429 cds-NP_490540.1 CDS NA 40975 41301 - NA 2430 samB CDS COG5464 42455 43396 - [S] Uncharacterized conserved protein 2431 parA CDS COG1192 43811 45016 + [D] ATPases involved in chromosome partitioning parB CDS ROG6756 45013 45990 + NA 2432 samB_2 CDS COG0389 46072 47346 - [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair samA CDS COG1974 47346 47768 - [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 2433 cds-NP_490546.1 CDS NA 48279 48749 + NA cds-NP_490547.1 CDS NA 48742 49098 + NA 2434 cds-NP_490548.1 CDS COG0863 49480 50160 + [L] DNA modification methylase cds-NP_490549.1 CDS NA 50160 50381 + NA 2435 cds-NP_490550.1 CDS ROG0890 50922 51686 + NA 2436 cds-NP_490551.1 CDS ROG6574 52182 52616 + NA 2437 cds-NP_490552.1 CDS NA 52683 53117 + NA 2438 cds-NP_490553.1 CDS NA 53353 53676 + NA 2439 ssbB CDS COG0629 54395 54913 + [L] Single-stranded DNA-binding protein cds-NP_490555.1 CDS NA 54968 55210 + NA 2440 cds-NP_490556.1 CDS ROG0611 55279 57276 + NA psiB CDS NA 57316 57750 + NA psiA CDS NA 57747 58484 + NA 2441 finP CDS COG0741 60123 60593 - [M] Soluble lytic murein transglycosylase and related 2442 traM CDS NA 61008 61388 + NA 2443 traJ CDS NA 61581 62267 + NA traY CDS ROG0197 62268 62588 + NA traA CDS NA 62630 62992 + NA traL CDS ROG3583 63007 63318 + NA traE CDS ROG1063 63340 63906 + NA traK CDS NA 63893 64633 + NA traB CDS ROG0073 64633 66054 + NA traP CDS NA 66044 66640 + NA trbD CDS COG2019 66618 66863 + [F] Archaeal adenylate kinase traV CDS ROG3904 66860 67375 + NA 2444 traR CDS COG1734 67510 67731 + [T] DnaK suppressor protein cds-NP_490572.1 CDS ROG0330 67724 68191 + NA 2445 traC CDS COG3451 68587 71235 + [U] Type IV secretory pathway, VirB4 components trbI CDS ROG0653 71210 71596 + NA traW CDS ROG0294 71593 72225 + NA traU CDS ROG0466 72222 73214 + NA cds-NP_490577.1 CDS NA 73233 73541 + NA trbC CDS ROG0019 73526 74164 + NA 2446 traN CDS ROG0227 74617 76443 + NA trbE CDS ROG5615 76454 76669 + NA traF CDS ROG1071 76681 77430 + NA 2447 traQ CDS NA 77644 77937 + NA trbB CDS ROG1071 77924 78472 + NA traH CDS ROG0947 78462 79844 + NA traG CDS ROG0919 79841 82663 + NA traS CDS NA 82679 83173 + NA traT CDS ROG1949 83209 83940 + NA 2448 traD CDS COG3505 84317 86560 + [U] Type IV secretory pathway, VirD4 components trbH CDS NA 86560 87279 + NA 2449 cds-NP_490590.1 CDS COG1487 86569 86967 - [R] Predicted nucleic acid-binding protein, contains PIN cds-NP_490591.1 CDS COG4456 86967 87197 - [S] Virulence-associated protein and related proteins 2450 traI CDS NA 87276 92534 + NA traX CDS ROG1688 92554 93294 + NA finO CDS NA 93349 93912 + NA