TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= sp|Q9TEM3.1|PRPC_EMENI RecName: Full=2-methylcitrate synthase, mitochondrial; Short=Methylcitrate synthase; AltName: Full=(2S,3S)-2-methylcitrate synthase; AltName: Full=Citrate synthase 2; Flags: Precursor Length=460 Score E Sequences producing significant alignments: (Bits) Value scaffold-693 393 6e-121 scaffold-157 390 6e-120 scaffold-287 64.3 9e-11 scaffold-212 57.4 1e-08 > scaffold-693 Length=1268102 Score = 393 bits (1010), Expect = 6e-121, Method: Compositional matrix adjust. Identities = 212/376 (56%), Positives = 269/376 (72%), Gaps = 6/376 (2%) Frame = +1 Query 86 GIRFHGKTIKDCQKELPKGPTGTEMLPEAMFWLLLTGEVPSTSQVRAFSKQLAEE-SHLP 144 GIRF G TI +C ++LPK G E LPE +F+LLLTGEVP+ QV S+ A S LP Sbjct 1243882 GIRFRGMTIPEC*EKLPKANGG*EPLPEGLFYLLLTGEVPTKEQVDEVSRDWANRASSLP 1244061 Query 145 DHILDLAKSFPKHMHPMTQISIITAALNTESKFAKLYEKGINKADYWEPTFDDAISLLAK 204 H+ D+ P +HPM+Q SI A+ +SKFA+ Y++G++K+ YWE ++D++ L+AK Sbjct 1244062 KHVEDIID*CPVTLHPMSQFSIAVTAMQHDSKFAQAYQQGVHKSKYWEYAYEDSMDLIAK 1244241 Query 205 IPRVAALVFRPNEIDVVGRQKLDPAQDWSYNFAELLGKGGANNADFHDLLRLYLALHGDH 264 +P VA+ ++R N +D +DWSYNFA +LG G +A F +L+RLYL +H DH Sbjct 1244242 LPVVASRIYR-NVFKDGKVAAIDKTKDWSYNFANMLGFG--KDAQFVELMRLYLTIHSDH 1244412 Query 265 EGGNVSAHATHLVGSALSDPFLSYSagllglagplhglaaQEVLRWILAMQEKIGTKFTD 324 EGGNVSAH THLVGSALSDP+LS++AGL GLAGPLHGLA QEVLRWIL M+E+IGT +D Sbjct 1244413 EGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLRWILQMKEEIGTNVSD 1244592 Query 325 EDVRAYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRKDVLANPVFQLVKKNSEI 384 E VR Y W TLKSG+V+PGYGH VLRK DPR+ +FA K + +P+F++V + I Sbjct 1244593 EQVRDYCWKTLKSGQVIPGYGHAVLRKTDPRYTCQREFAL--KHLPTDPLFKMVSQLYNI 1244766 Query 385 APGVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALG 444 P VLTE GKTKNP PNVDA SGVL HY ++ +YTV FGVSRALG L QL+WDRALG Sbjct 1244767 VPNVLTEQGKTKNPFPNVDAHSGVLLQHYNLKEQEFYTVLFGVSRALGCLSQLVWDRALG 1244946 Query 445 LPIERPKSINLLGLKK 460 LPIERPKS+ +KK Sbjct 1244947 LPIERPKSLTTDTIKK 1244994 Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/67 (42%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +3 Query 20 RRGYATAEPDLKSALKAVIPAKRELLAEVKKQ-GDEVIGEVKVSNVIGGMRGLKSMLWEG 78 R T LK+ L ++P K E + V+K+ G++ +G V V GGMRG+K ++WE Sbjct 1243614 RLASTTTATSLKNRLSELVP*K*EEVKRVRKEHGEKSLGNVTVDMAYGGMRGIKGLIWET 1243793 Query 79 SVLDADE 85 S+LDADE Sbjct 1243794 SLLDADE 1243814 > scaffold-157 Length=706690 Score = 390 bits (1003), Expect = 6e-120, Method: Compositional matrix adjust. Identities = 212/376 (56%), Positives = 268/376 (71%), Gaps = 6/376 (2%) Frame = +2 Query 86 GIRFHGKTIKDCQKELPKGPTGTEMLPEAMFWLLLTGEVPSTSQVRAFSKQLAEE-SHLP 144 GIRF G TI +C ++LPK G E LPE +F+LLLTGEVP+ QV S+ A S LP Sbjct 314582 GIRFRGMTIPEC*EKLPKANGG*EPLPEGLFYLLLTGEVPTKEQVDEVSRDWANRASSLP 314761 Query 145 DHILDLAKSFPKHMHPMTQISIITAALNTESKFAKLYEKGINKADYWEPTFDDAISLLAK 204 H+ D+ P +HPM+Q SI A+ +SKFA+ Y +G++K+ YWE ++D++ L+AK Sbjct 314762 KHVEDIID*CPVTLHPMSQFSIAVTAMQHDSKFAQAY*QGVHKSKYWEYAYEDSMDLIAK 314941 Query 205 IPRVAALVFRPNEIDVVGRQKLDPAQDWSYNFAELLGKGGANNADFHDLLRLYLALHGDH 264 +P VA+ ++R N +D +DWSYNFA +LG G +A F +L+RLYL +H DH Sbjct 314942 LPVVASRIYR-NVFKDGKVAAIDKTKDWSYNFANMLGFG--KDAQFVELMRLYLTIHSDH 315112 Query 265 EGGNVSAHATHLVGSALSDPFLSYSagllglagplhglaaQEVLRWILAMQEKIGTKFTD 324 EGGNVSAH THLVGSALSDP+LS++AGL GLAGPLHGLA QEVLRWIL M+E+IGT +D Sbjct 315113 EGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLRWILQMKEEIGTNVSD 315292 Query 325 EDVRAYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRKDVLANPVFQLVKKNSEI 384 E VR Y W TLKSG+V+PGYGH VLRK DPR+ +FA K + +P+F++V + I Sbjct 315293 EQVRDYCWKTLKSGQVIPGYGHAVLRKTDPRYTCQREFAL--KHLPTDPLFKMVSQLYNI 315466 Query 385 APGVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPLYYTVTFGVSRALGPLVQLIWDRALG 444 P VLTE GKTKNP PNVDA SGVL HY ++ +YTV FGVSRALG L QL+WDRALG Sbjct 315467 VPNVLTEQGKTKNPFPNVDAHSGVLLQHYNLKEQEFYTVLFGVSRALGCLSQLVWDRALG 315646 Query 445 LPIERPKSINLLGLKK 460 LPIERPKS+ +KK Sbjct 315647 LPIERPKSLTTDTIKK 315694 Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query 20 RRGYATAEPDLKSALKAVIPAKRELLAEVKKQ-GDEVIGEVKVSNVIGGMRGLKSMLWEG 78 R T LK+ + ++P K E + V+K+ G++ +G V V GGMRG+K ++WE Sbjct 314314 RLASTTTATSLKNRMSELVP*K*EEVKRVRKEHGEKSLGNVTVDMAYGGMRGIKGLIWET 314493 Query 79 SVLDADE 85 S+LDADE Sbjct 314494 SLLDADE 314514 > scaffold-287 Length=687983 Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 58/373 (16%) Frame = -3 Query 117 WLLLTGEVPSTSQVRAFSKQLAEESHLPDHILDLAKSFPKHMHPMTQ-ISIITA--ALNT 173 +LL+ G++P Q +A+S ++ + + + DL +F HPM+ IS I++ A + Sbjct 548001 YLLIYGQLPD*VQYQAWSSEILRHTFVHTRLADLMSNFNYDAHPMSMYISGISSMSAFHP 547822 Query 174 ESKFA----KLYEKG---INKADYWEPTFDDAISLL-----------------AKIPRVA 209 E+ A LY+K +NK + +I L+ K P +A Sbjct 547821 EANPAL*GNDLYKKNPKILNKQIFR--ILGISIILMHLF**LIQKYSL*CLHVGKAPTLA 547648 Query 210 ALVFRPNEIDVVGR------QKLDPAQDWSYNFAELLGKGGANNADFHDLLRLYLALHGD 263 A+ +R +GR LD +++ Y L + N L + LH D Sbjct 547647 AMSYRHR----IGRPYNLPKNGLDYTENFLYMLDHLNEEEYRPNPRLARALDILFILHAD 547480 Query 264 HEGGNVSAHATHLVGSALSDPFLSYSagllglagplhglaaQEVLRWILAMQEKIGTKFT 323 HE N S A + S+L DP+ + + L GPLHG A Q V+ ++ +IG+ Sbjct 547479 HEM-NCSTAAMRHISSSLVDPYSAVAGSCAALYGPLHGGATQSVVLQLI----EIGSV-- 547321 Query 324 DEDVRAYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRKDVLA-NPVFQLVKKNS 382 ++V ++ D R + G+GH + DPR + + A +++ P+ + K Sbjct 547320 -DNVPQFIEDVKNKKRKLMGFGHRIYTTFDPRSKIIRRLAYEVFEIVGKEPLIDIALKLE 547144 Query 383 EIAPGVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPL-YYTVTFGVSRALGPLVQLIWDR 441 E A + E+ + +PNVD SG+++ GF PL ++ V F + R G L W Sbjct 547143 EAA--LNDEYFIKRKLYPNVDFYSGIIYKAMGF--PLDFFPVLFAIPRICGYLAH--WKE 546982 Query 442 AL---GLPIERPK 451 +L G I RP+ Sbjct 546981 SLED*GGKIWRPR 546943 > scaffold-212 Length=372105 Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/266 (28%), Positives = 120/266 (45%), Gaps = 29/266 (11%) Frame = -2 Query 199 ISLLAKIPRVAALVFRPNEIDVVGRQKLDPAQ--DWSYNFAELLGKGGAN----NADFHD 252 I + K P +AA+ +R +GR P D++ NF +L N Sbjct 46016 IMCVGKAPTLAAMSYRHR----IGRPYNLPKNGLDYTENFLYMLDHLNEEEYRPNPRLAR 45849 Query 253 LLRLYLALHGDHEGGNVSAHATHLVGSALSDPFLSYSagllglagplhglaaQEVLRWIL 312 L + LH DHE N S A + S+L DP+ + + L GPLHG A Q V+ ++ Sbjct 45848 ALDILFILHADHEM-NCSTAAMRHISSSLVDPYSAVAGSCAALYGPLHGGATQSVVLQLI 45672 Query 313 AMQEKIGTKFTDEDVRAYLWDTLKSGRVVPGYGHGVLRKPDPRFQALMDFAATRKDVLA- 371 +IG+ ++V ++ D R + G+GH + DPR + + A +++ Sbjct 45671 ----EIGSV---DNVPQFIEDVKNKKRKLMGFGHRIYTTFDPRSKIIRRLAYEVFEIVGK 45513 Query 372 NPVFQLVKKNSEIAPGVLTEHGKTKNPHPNVDAASGVLFYHYGFQQPL-YYTVTFGVSRA 430 P+ + K E A + E+ + +PNVD SG+++ GF PL ++ V F + R Sbjct 45512 EPLIDIALKLEEAA--LNDEYFIKRKLYPNVDFYSGIIYKAMGF--PLDFFPVLFAIPRI 45345 Query 431 LGPLVQLIWDRAL---GLPIERPKSI 453 G L W +L G I RP+ + Sbjct 45344 CGYLAH--WKESLEDQGGKIWRPRQV 45273 Lambda K H a alpha 0.319 0.136 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 2791270510 Database: X5.fasta Posted date: Nov 5, 2018 7:49 PM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40