RID: 8TW4617G016 Job Title:POL1_CPMVS P03600 RNA1 polyprotein (B RNA Program: BLASTP Query: POL1_CPMVS P03600 RNA1 polyprotein (B RNA polyprotein) (Bottom component polyprotein) (Genome polyprotein B) (P1) (Protease cofactor) (32 kDa protein) (Putative helicase) (3.6.4.-) (58 kDa protein) (Membrane-binding protein) (NTP-binding protein) (NTB) (Viral genome-linked protein) (VPg) (Picornain 3C-like protease) (3C-like protease) (3.4.22.- {ECO:0000269|PubMed:16789216}) (24 kDa protein) (RNA-directed RNA polymerase {ECO:0000255|PROSITE-ProRule:PRU00539}) (2.7.7.48 {ECO:0000255|PROSITE-ProRule:PRU00539, ECO:0000269|PubMed:1431806}) (87 kDa protein) ID: lcl|Query_250670(amino acid) Length: 208 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotei... Cowpea mosai... NA 928299 443 443 100% 6e-144 100.00 1866 P03600.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Red clover m... NA 12262 243 243 100% 3e-73 54.81 1864 P35930.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Bean-pod mot... NA 31715 227 227 100% 1e-67 50.96 1850 Q9YJU5.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Cowpea sever... NA 31716 185 185 100% 7e-53 44.76 1858 P36312.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 649895 107 107 97% 1e-25 33.17 1842 Q76L40.1 RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprote... Broad bean w... NA 76875 92.0 92.0 93% 2e-20 29.38 1870 Q9WNW0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tobacco ring... NA 282064 58.2 58.2 84% 8e-09 25.13 2304 Q88893.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Tomato rings... NA 12281 51.2 51.2 54% 2e-06 31.01 2197 P29150.2 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Blackcurrant... NA 65743 47.4 47.4 86% 4e-05 25.85 2094 Q8V5E0.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Grapevine fa... NA 12274 45.4 45.4 62% 2e-04 27.61 2284 P29149.1 RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains:... Arabis mosai... NA 282063 44.3 44.3 56% 4e-04 26.83 2284 Q6W8W5.1 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12106 38.9 38.9 19% 0.024 41.46 2292 P17594.2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Lead... Encephalomyo... NA 12105 38.9 38.9 19% 0.024 41.46 2292 P17593.1 Alignments: >RecName: Full=RNA1 polyprotein; AltName: Full=B RNA polyprotein; AltName: Full=Bottom component polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea mosaic virus strain SB] Sequence ID: P03600.1 Length: 1866 Range 1: 948 to 1155 Score:443 bits(1140), Expect:6e-144, Method:Compositional matrix adjust., Identities:208/208(100%), Positives:208/208(100%), Gaps:0/208(0%) Query 1 MSLDQSSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRY 60 MSLDQSSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRY Sbjct 948 MSLDQSSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRY 1007 Query 61 YHQFDPANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKF 120 YHQFDPANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKF Sbjct 1008 YHQFDPANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKF 1067 Query 121 GGFYEAQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKI 180 GGFYEAQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKI Sbjct 1068 GGFYEAQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKI 1127 Query 181 VGVHVAGIQGKIGCASLLPPLEPIAQAQ 208 VGVHVAGIQGKIGCASLLPPLEPIAQAQ Sbjct 1128 VGVHVAGIQGKIGCASLLPPLEPIAQAQ 1155 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Red clover mottle virus] Sequence ID: P35930.1 Length: 1864 Range 1: 944 to 1151 Score:243 bits(621), Expect:3e-73, Method:Compositional matrix adjust., Identities:114/208(55%), Positives:143/208(68%), Gaps:0/208(0%) Query 1 MSLDQSSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRY 60 MSLDQS+V+I++KC A + + QIV+VPGRRF+ HFF ++K L V+I R Y Sbjct 944 MSLDQSTVSILNKCHAKFIIASQHAQIVLVPGRRFIGYSHFFCNLKHPLMVQIETADRTY 1003 Query 61 YHQFDPANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKF 120 +H++ P N+ I DSEL +Y LED+SHSCWDLFCWDPDKELP F ADF+SCKYN + Sbjct 1004 FHRYQPENMEYIEDSELCVYHSSCLEDISHSCWDLFCWDPDKELPKKFSADFVSCKYNTW 1063 Query 121 GGFYEAQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKI 180 E +A++ KE TI G Y N VS + YEAPT+ DCGS++I ++GGK KI Sbjct 1064 TKSVEPTWANVDAEVIKEDFTICDGEYRNTVSTSIRYEAPTVMSDCGSMIITNVGGKTKI 1123 Query 181 VGVHVAGIQGKIGCASLLPPLEPIAQAQ 208 VG+HVAG KIG ASLLPPL P AQAQ Sbjct 1124 VGIHVAGRDNKIGMASLLPPLLPCAQAQ 1151 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Bean-pod mottle virus (strain Kentucky G7)] Sequence ID: Q9YJU5.1 Length: 1850 Range 1: 933 to 1140 Score:227 bits(579), Expect:1e-67, Method:Compositional matrix adjust., Identities:106/208(51%), Positives:144/208(69%), Gaps:0/208(0%) Query 1 MSLDQSSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRY 60 MS DQS VAIMSKC+A++ G T+ QI+MVPGRRF+A HFF ++ K+RV+IV + Y Sbjct 933 MSFDQSVVAIMSKCKASMRMGNTDAQILMVPGRRFIAHGHFFKNLTQKVRVQIVTSEKSY 992 Query 61 YHQFDPANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKF 120 +H +DP +SE+ LY++P+LED+ HS WDLFCWD +K LP+ F A+ LSCK + Sbjct 993 WHVYDPDKFQMFDNSEIGLYTNPTLEDIPHSAWDLFCWDSEKTLPNNFSAELLSCKLDTV 1052 Query 121 GGFYEAQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKI 180 G Y + A I R ++ + I GNYV K +EY+A TIP DCGSLV+A +G +I Sbjct 1053 TGQYYPRMAPINCRVHRQPIHITEGNYVRKQDVSIEYDACTIPNDCGSLVVAKVGNHKQI 1112 Query 181 VGVHVAGIQGKIGCASLLPPLEPIAQAQ 208 VG HVAG +G++G ASL+P +EP+ QAQ Sbjct 1113 VGFHVAGSKGRLGYASLIPYVEPVVQAQ 1140 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; AltName: Full=P1; Contains: RecName: Full=Protease cofactor; AltName: Full=32 kDa protein; Contains: RecName: Full=Putative helicase; AltName: Full=58 kDa protein; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=24 kDa protein; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=87 kDa protein [Cowpea severe mosaic virus (strain DG)] Sequence ID: P36312.1 Length: 1858 Range 1: 937 to 1146 Score:185 bits(470), Expect:7e-53, Method:Compositional matrix adjust., Identities:94/210(45%), Positives:131/210(62%), Gaps:2/210(0%) Query 1 MSLDQSSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRY 60 MSLDQS++ IM KC+AN VF + QIVM+PGR+FL KH F + + + V+I ++Y Sbjct 937 MSLDQSTMLIMEKCKANFVFSNISCQIVMLPGRQFLCYKHVFASLNSPMYVDIYTANKKY 996 Query 61 YHQFDPAN-IYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELP-SVFGADFLSCKYN 118 + P N +Y DSE++LY SLED+ SCWDLFC+D +K LP F A+ LSCK + Sbjct 997 KLYYKPQNRVYFETDSEIMLYKDASLEDIPASCWDLFCFDAEKSLPRGSFPAEILSCKLD 1056 Query 119 KFGGFYEAQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKH 178 + + ++ADI RT + L ++ G Y YL+Y+ T EDCGSL+IA I G+ Sbjct 1057 RTTNQHIPEWADISARTVNQKLDVEFGEYQTIFYSYLQYDVSTKAEDCGSLIIATIDGRK 1116 Query 179 KIVGVHVAGIQGKIGCASLLPPLEPIAQAQ 208 KI+G+H AG + G AS +P +E QAQ Sbjct 1117 KIIGIHTAGRANRSGFASYMPQVEIPVQAQ 1146 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 1 ATCC PV132] Sequence ID: Q76L40.1 Length: 1842 Range 1: 941 to 1143 Score:107 bits(266), Expect:1e-25, Method:Compositional matrix adjust., Identities:68/205(33%), Positives:103/205(50%), Gaps:4/205(1%) Query 6 SSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRYYHQFD 65 S++ I C A LV +Q+ M PGR FL HF I + V++ Y ++ Sbjct 941 SALWIAENCMATLVVMKDRVQVCMAPGRSFLGVNHFLRMIPNGVMVKLETGMTETYFVWE 1000 Query 66 PANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKFGGFYE 125 + + +SE+ LY+ +L S D F +D + LP F A F + K++K Y Sbjct 1001 KSKLKLFENSEIALYTSSNLPKAPDSLVDRFHFDLET-LPKTFPAQFFTYKFDKDMQQYV 1059 Query 126 AQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKIVGVHV 185 + ++ + + L + SG Y +S +L Y PT+ DCG LV+A I GK K+VG+HV Sbjct 1060 PELGELLCKKAERALCVVSGEYRRVISHHLTYRNPTVAGDCGGLVLAIIEGKCKLVGLHV 1119 Query 186 AGIQGKIGCASLLP--PLEPIAQAQ 208 A G+ G AS +P P +AQ Q Sbjct 1120 AS-DGEEGAASPVPWDPDFKVAQGQ 1143 >RecName: Full=RNA1 polyprotein; AltName: Full=Genome polyprotein B; Contains: RecName: Full=Protease cofactor; Contains: RecName: Full=Putative helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Contains: RecName: Full=RNA-directed RNA polymerase [Broad bean wilt virus 2] Sequence ID: Q9WNW0.1 Length: 1870 Range 1: 969 to 1160 Score:92.0 bits(227), Expect:2e-20, Method:Compositional matrix adjust., Identities:57/194(29%), Positives:87/194(44%), Gaps:2/194(1%) Query 6 SSVAIMSKCRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRYYHQFD 65 S++ I C A L F Q+ + PGR F H I + V++ Y + Sbjct 969 SALWIAETCMATLTFSNVRTQVCLAPGRGFFGVNHCLAAIPAGVMVKMDSSIGVTYFVWG 1028 Query 66 PANIYDIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKFGGFYE 125 + +E+ LY +L S +D + LP F A F S KY+ Sbjct 1029 KEKLLQFDGNEIALYMTSTLPKTVDSLLGRIHFDVET-LPKTFSAVFFSYKYDPMIQQMV 1087 Query 126 AQYADIKVRTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKIVGVHV 185 + + + + T+ G Y ++ + L YEA T+ DCGSL++A I GK K+VG+HV Sbjct 1088 PELGSVTCKVHNKAYTLAHGEYRREIPQSLSYEASTVAGDCGSLILAEIEGKFKLVGMHV 1147 Query 186 AGIQGKIGCASLLP 199 A G+ G AS +P Sbjct 1148 A-FNGREGSASFMP 1160 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Tobacco ringspot virus strain Bud Blight] Sequence ID: Q88893.1 Length: 2304 Range 1: 1295 to 1476 Score:58.2 bits(139), Expect:8e-09, Method:Compositional matrix adjust., Identities:48/191(25%), Positives:85/191(44%), Gaps:25/191(13%) Query 25 LQIVMVPGRRFLACKHFF---------THIKTKLRVEIVMDGRRYYHQFDPANIYDIPDS 75 + V PGR+F H T+ VEI + + D + D+ Sbjct 1295 VNAVRGPGRQFFNSHQALMIPNNSTVVAHFSTRDVVEI-------HWEHDVVRKGEKKDT 1347 Query 76 ELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKFGGFYEAQYA-----D 130 E++ Y PS+ ++ C F +D +++ P F D SC + G + + D Sbjct 1348 EIIQYRCPSIPELPSRCKKYFEYDLERDFPGPFTLD-ASCYRMQSPGKIDIELVSWTDHD 1406 Query 131 IKVRTKKECLTIQSGN--YVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKIVGVHVAGI 188 ++RT+ + G Y ++ +Y++Y P DCG++ +A IGG+H+IVG+ ++ Sbjct 1407 RELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQLHDCGAICVAKIGGQHRIVGLVISTD 1466 Query 189 QGKIGCASLLP 199 + G LLP Sbjct 1467 KHNTGVG-LLP 1476 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Tomato ringspot virus (isolate raspberry)] Sequence ID: P29150.2 Length: 2197 Range 1: 1330 to 1454 Score:51.2 bits(121), Expect:2e-06, Method:Compositional matrix adjust., Identities:40/129(31%), Positives:63/129(48%), Gaps:20/129(15%) Query 75 SELVLYSHPSLEDVSHSCWDLFCWDPDK------------ELPSVFGADFLSCKYNKFGG 122 +E+ +YSHP L + + + F D +K +L + + K N+ Sbjct 1330 TEVCIYSHPQLSALPGAPQNYFLKDVEKISGDIAIKGCGIKLGRTSVGECVGVKDNE--P 1387 Query 123 FYEAQYADIKVRTKKECLTI----QSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKH 178 A KVRT K +TI + G+Y N + + E PEDCG+L++AH+ G + Sbjct 1388 VLNHWRAVAKVRTTK--ITIDNYSEGGDYSNDLPTSIISEYVNSPEDCGALLVAHLEGGY 1445 Query 179 KIVGVHVAG 187 KI+G+HVAG Sbjct 1446 KIIGMHVAG 1454 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=Protein X1; Contains: RecName: Full=Protein X2; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; Short=PRO; Contains: RecName: Full=RNA-directed RNA polymerase; Short=POL [Blackcurrant reversion virus] Sequence ID: Q8V5E0.1 Length: 2094 Range 1: 1157 to 1360 Score:47.4 bits(111), Expect:4e-05, Method:Compositional matrix adjust., Identities:53/205(26%), Positives:83/205(40%), Gaps:27/205(13%) Query 21 GGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRYYHQFDPAN-----IYDIPDS 75 G + + + GR L KH I RV GR Q P + + + D+ Sbjct 1157 GDSIISCIRFKGRSLLLTKHQALAIPEGARVYCNYYGRGRAVQTIPLSWSYKKVREFADT 1216 Query 76 ELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKF--------GGFYEAQ 127 E VL+ L + F P + LPSVF + + K ++ F Q Sbjct 1217 EAVLFLDAQLSTMPAGREHYFN-VPVERLPSVFDMNGVVMKQKRYMTDSDDSLAAFTPNQ 1275 Query 128 -----YADIKVRTKKECLTIQS----GNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKH 178 + + + + E I + GNY N++ R + T PEDCG+++ G+ Sbjct 1276 PVVNTWENSRAKLNCERQGINTFAYGGNYRNELPRSISSNCNTSPEDCGAIMTMIFEGRR 1335 Query 179 KIVGVHVA---GIQGK-IGCASLLP 199 +VG+HVA QG+ + A LLP Sbjct 1336 VVVGMHVASGKNPQGRYMSTACLLP 1360 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Grapevine fanleaf virus] Sequence ID: P29149.1 Length: 2284 Range 1: 1323 to 1452 Score:45.4 bits(106), Expect:2e-04, Method:Compositional matrix adjust., Identities:37/134(28%), Positives:65/134(48%), Gaps:9/134(6%) Query 71 DIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKEL-PSVFGADFLSCKYNKFGGFYEAQYA 129 + P++ELV++ HP L + F D D+++ P+V C G + + Sbjct 1323 EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNV---AVKCCVARLEDGIPQFHFW 1379 Query 130 DIKVRTKKECLTIQ---SGN-YVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKIVGVHV 185 + E T++ GN Y NK+ RY+ Y DCG+L +A I G K++ + V Sbjct 1380 SKYATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLV 1439 Query 186 AGIQGKIGCASLLP 199 +G +G + +S++P Sbjct 1440 SGNRG-VTYSSVIP 1452 >RecName: Full=RNA1 polyprotein; AltName: Full=P1; Contains: RecName: Full=P1A protein; Short=1A; AltName: Full=Protease cofactor; Contains: RecName: Full=Putative ATP-dependent helicase; AltName: Full=1B; AltName: Full=Membrane-binding protein; AltName: Full=NTP-binding protein; Short=NTB; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=1C-VPg; Contains: RecName: Full=Picornain 3C-like protease; Short=3C-like protease; AltName: Full=1D-PRO; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=1E-POL [Arabis mosaic virus strain NW] Sequence ID: Q6W8W5.1 Length: 2284 Range 1: 1322 to 1441 Score:44.3 bits(103), Expect:4e-04, Method:Compositional matrix adjust., Identities:33/123(27%), Positives:56/123(45%), Gaps:8/123(6%) Query 71 DIPDSELVLYSHPSLEDVSHSCWDLFCWDPDKEL-PSVFGADFLSCKYNKFGGFYEAQYA 129 + PD+ELV++ H L + F DPD ++ P+V C G + + Sbjct 1322 EFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQISPNV---AVKCCVARLEDGIPQFHFW 1378 Query 130 DIKVRTKKECLTIQ----SGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKIVGVHV 185 + + + TI+ S Y NK+ RY+ Y DCG++ +A I K++ + V Sbjct 1379 NKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAKRNDCGAIAVAEIQRTPKVLAMLV 1438 Query 186 AGI 188 +GI Sbjct 1439 SGI 1441 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-d diabetogenic] Sequence ID: P17594.2 Length: 2292 Range 1: 1775 to 1815 Score:38.9 bits(89), Expect:0.024, Method:Compositional matrix adjust., Identities:17/41(41%), Positives:26/41(63%), Gaps:0/41(0%) Query 155 LEYEAPTIPEDCGSLVIAHIGGKHKIVGVHVAGIQGKIGCA 195 + Y+A T CGS ++A +GGK KI+G+H AG G+ + Sbjct 1775 IHYKANTRKGWCGSALLADLGGKKKILGMHSAGSMGRTAAS 1815 >RecName: Full=Genome polyprotein; Contains: RecName: Full=Leader protein; Short=L; Contains: RecName: Full=Capsid protein VP0; AltName: Full=VP4-VP2; Contains: RecName: Full=Capsid protein VP4; AltName: Full=P1A; AltName: Full=Rho; AltName: Full=Virion protein 4; Contains: RecName: Full=Capsid protein VP2; AltName: Full=Beta; AltName: Full=P1B; AltName: Full=Virion protein 2; Contains: RecName: Full=Capsid protein VP3; AltName: Full=Gamma; AltName: Full=P1C; AltName: Full=Virion protein 3; Contains: RecName: Full=Capsid protein VP1; AltName: Full=Alpha; AltName: Full=P1D; AltName: Full=Virion protein 1; Contains: RecName: Full=Protein 2A; Short=P2A; AltName: Full=G; Contains: RecName: Full=Protein 2B; Short=I; Short=P2B; Contains: RecName: Full=Protein 2C; Short=C; Short=P2C; Contains: RecName: Full=Protein 3A; Short=P3A; Contains: RecName: Full=VPg; Short=P3B; AltName: Full=H; AltName: Full=Protein 3B; Contains: RecName: Full=Protease 3C; Short=P3C; AltName: Full=Picornain 3C; AltName: Full=p22; Contains: RecName: Full=RNA-directed RNA polymerase; Short=RdRp; AltName: Full=3D polymerase; Short=3Dpol; AltName: Full=E; AltName: Full=Protein 3D; Short=3D; Flags: Precursor [Encephalomyocarditis virus strain emc-b nondiabetogenic] Sequence ID: P17593.1 Length: 2292 Range 1: 1775 to 1815 Score:38.9 bits(89), Expect:0.024, Method:Compositional matrix adjust., Identities:17/41(41%), Positives:26/41(63%), Gaps:0/41(0%) Query 155 LEYEAPTIPEDCGSLVIAHIGGKHKIVGVHVAGIQGKIGCA 195 + Y+A T CGS ++A +GGK KI+G+H AG G+ + Sbjct 1775 IHYKANTRKGWCGSALLADLGGKKKILGMHSAGSMGRTAAS 1815