TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P36649 (516 letters) Database: 3posl 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE006230|AE006230 Pasteurella multocida subsp. multocida st... 163 1e-40 embl|AE006045|AE006045 Pasteurella multocida subsp. multocida st... 163 1e-40 embl|AE004633|AE004633 Pseudomonas aeruginosa PAO1, section 194 ... 79 4e-15 embl|AE004795|AE004795 Pseudomonas aeruginosa PAO1, section 356 ... 74 1e-13 embl|AE004829|AE004829 Pseudomonas aeruginosa PAO1, section 390 ... 32 0.60 embl|AE004339|AE004339 Vibrio cholerae O1 biovar eltor str. N169... 29 3.0 embl|AE004478|AE004478 Pseudomonas aeruginosa PAO1, section 39 o... 28 6.6 embl|AE004405|AE004405 Vibrio cholerae O1 biovar eltor str. N169... 28 8.6 >embl|AE006230|AE006230 Pasteurella multocida subsp. multocida str. Pm70 section 197 of 204 of the complete genome. Length = 10325 Score = 163 bits (413), Expect = 1e-40 Identities = 164/559 (29%), Positives = 233/559 (41%), Gaps = 43/559 (7%) Frame = -3 Query: 1 MQRRDFLKYSVALGVASALPLWSRA----------------VFAAERPTLPIPDLLTTDA 44 M+RRDFL+Y + + +AS+ L+S A V PT +P L+ + Sbjct: 8253 MKRRDFLRYGIGISLASS-SLYSLANMMNHAQHGNMAMMHSVPTGLMPTEAMPSGLSLNG 8077 Query: 45 RNRIQLTIGAGQSTFGGKTATT------------------WGYNGNLLGPAVKLQRGKAV 86 L A QST G T W YNG L GP +++ G V Sbjct: 8076 I----LPKLANQSTQAGLFTATLKAEPIKIRLADNKETEFWAYNGQLPGPQIEVFEGDTV 7909 Query: 87 TVDIYNQLTEETTLHWHGLEVPGEVDXXXXXXXXXXXKRSVTLNVDQ-PAATCWFHPHQH 145 ++ N L + +T+HWHGL+VP E D K+ + Q A T W+HPH H Sbjct: 7908 EIEFINHLPQPSTVHWHGLDVPNEADGNPMDMVEPQGKKVYRFTLPQGSAGTYWYHPHPH 7729 Query: 146 GKTGRQVAMGLAGLVVIEDDEILKLMLPKQ-WGIDDVPVIVQDKKFSADGQI--DYQLDV 202 QV GLAG V++ LP+Q W ++ D + +ADG I + LD Sbjct: 7728 DHVSEQVYKGLAGTFVVKAKNDPLAHLPEQHW-------VISDLRLNADGTIPANTMLDW 7570 Query: 203 MTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGG 262 M G G+ +L NG PQ R+RL N +AR + + V+ ++GG Sbjct: 7569 MN---GREGEFVLINGQYQPQIQVKTN-ERIRLWNATSARYFRLNIPGVKWI-VVGTEGG 7405 Query: 263 LLPEP-VKVSELPVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQP 321 LL +P V EL + ER EV++ +L + + M + K + IQ Sbjct: 7404 LLEKPRAPVDELLLTPAERVEVIMVGETQGTVNLQSGYYDRRKMMVQEQPKDLTLATIQ- 7228 Query: 322 IAISASGALPDTLSSLPALPSLEGLTVRKLQLSXXXXXXXXXXXXXXEKYGDQAMAGMDH 381 S LP++L SLP E VR+++ S + M M+H Sbjct: 7227 -VKSEPVQLPESLRSLPNWD--EPKQVRQIRFS-------------EKMMNHTNMPMMNH 7096 Query: 382 SQXXXXXXXXXXXXXXXXXKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMM 441 + INGQ FDMN+ F A + E+W I M Sbjct: 7095 GTHHATTTPTDNPIPPM-----MNGMFLINGQTFDMNRIDFVAKLNEVEQWEIFNESHMD 6931 Query: 442 LHPFHIHGTQFRILSE--NGKPPAAHRAGWKDTVKVEGNVSEVLVKF--NHDAPKEHAYM 497 HPFH+HGTQF ++ NGK KD V + +V+++F H K M Sbjct: 6930 -HPFHLHGTQFEVIQHTLNGKTFKPEGRALKDVVNLR-PYEKVIIRFKQGHTGLK----M 6769 Query: 498 AHCHLLEHEDTGMMLGFTV 516 HCH+LEHE+ GMM F V Sbjct: 6768 YHCHILEHENLGMMGMFKV 6712 >embl|AE006045|AE006045 Pasteurella multocida subsp. multocida str. Pm70 section 12 of 204 of the complete genome. Length = 10638 Score = 163 bits (413), Expect = 1e-40 Identities = 97/295 (32%), Positives = 153/295 (51%), Gaps = 1/295 (0%) Frame = +2 Query: 3 RRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG-G 61 RR F K S+ SALP ++ AA R L IP LL T I L++ + Q G Sbjct: 6956 RRQFFKTSLIATALSALP---SSLLAATRQALRIPPLLETRRGKPIFLSLDSVQYPLEMG 7126 Query: 62 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDXXXXXXXXX 121 KT WG+NG+ LGP +K+++G ++ N L + ++ GL+ GE+ Sbjct: 7127 KTVEVWGFNGHYLGPTIKIRKGDFAKLNYRNNLPQGVSMSIQGLQASGELLGGVGRVLQP 7306 Query: 122 XXKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDV 181 S + + Q A+TCW+H + Q GLAG+ +IED++ LK LP ++G++D+ Sbjct: 7307 KETWSPIIPITQAASTCWYHSVSLANSAYQTYRGLAGMWIIEDEQSLKSGLPHKYGVNDI 7486 Query: 182 PVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCNA 241 P+I+QD + + G +Q + FG+ L NG P PRGW+RLRL+N + Sbjct: 7487 PLILQDMRLNNQGLQLFQPN----QTALFGNRLFVNGQEAPYVNVPRGWVRLRLVNASLS 7654 Query: 242 RSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLV 296 R D R + +IASD G LP+ + + + ER E+L+++N+ + L+ Sbjct: 7655 RHYELRLDDEREMRLIASDQGFLPQAKVLKSIVLAPSERSELLIDLNEGESVRLI 7819 Score = 44.3 bits (103), Expect = 9e-05 Identities = 29/88 (32%), Positives = 42/88 (47%) Frame = +2 Query: 410 INGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGW 469 +N + FD K + A ERW ++ G M F I G +F I S N W Sbjct: 8036 VNDKHFDP-KRVTNAKLNTTERWTLTANGIM---GFRIQGAKFLIESINDTSVEQSEIAW 8203 Query: 470 KDTVKVEGNVSEVLVKFNHDAPKEHAYM 497 KD+V + G V ++LVKF H + H ++ Sbjct: 8204 KDSVLINGKV-QILVKFEHMSSNNHPFL 8284 >embl|AE004633|AE004633 Pseudomonas aeruginosa PAO1, section 194 of 529 of the complete genome. Length = 10107 Score = 78.6 bits (192), Expect = 4e-15 Identities = 108/446 (24%), Positives = 170/446 (38%), Gaps = 65/446 (14%) Frame = -2 Query: 3 RRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFGGK 62 RR F+K A G+ L LW +A P +LL D+ L IG G Sbjct: 5588 RRTFVKGLAATGLLGGLGLWRAPAWALAGPGQQ--NLLAGDS---FDLFIGETPVNLSGS 5424 Query: 63 TATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDXXXXXXXXXX 122 A NG+L GP ++ + G VT+ + N+L E+T++HWHG+ +P +D Sbjct: 5423 PAAAMTINGSLPGPTLRWREGDNVTLRVRNRLAEDTSIHWHGIILPANMDGVPGLSFEGI 5244 Query: 123 XKRSV---TLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILK-------LML 172 + V Q T W+H H +G Q G+ G +VI+ E ++L Sbjct: 5243 APGGLYEYRFKVRQ-NGTYWYHSH----SGLQEQAGVYGALVIDAREPEPFSYDRDYVVL 5079 Query: 173 PKQWG----------------------------IDDV-----PVIVQDKKFSADGQIDYQ 199 W IDDV + D+K A+ ++ Sbjct: 5078 LSDWSDEKPQRILAKLKKQSDYYNFHKRTVGDFIDDVSANGWAATLADRKMWAEMKMS-- 4905 Query: 200 LDVMTAAVGWFGDTLLTNG----AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLY 255 A V + T L NG + P LRLR +N +A S + Sbjct: 4904 -PTDLADVSGYTYTYLLNGQPPDGNWTGLFRPGEKLRLRFVN-ASAMSYFDVRIPGLKMT 4731 Query: 256 VIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLV------------TLPVSQM 303 V+A+DG + EPV V EL + + E ++V+VE + + L TL +++ Sbjct: 4730 VVAADGQHV-EPVSVDELRIAVAETYDVIVEPGGERAYTLFAQSMDRSGYARGTLALAEG 4554 Query: 304 GMAIAPFDKPHPVMRIQPIAISA--SGALPDTLSSLPAL----PSLEGLTVRKLQLSXXX 357 A P P P++ + + + GA+ ++ PA + G+ V + S Sbjct: 4553 LSAPVPTPDPRPLIGMDDMGMGGMDHGAMGHGAATRPASEMDHSKMSGMDVNGMDHS--- 4383 Query: 358 XXXXXXXXXXXEKYGDQAMAGMDHSQ 383 K M+GMDHS+ Sbjct: 4382 ------------KMAGMDMSGMDHSK 4341 Score = 32.0 bits (71), Expect = 0.46 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 11/92 (11%) Frame = -2 Query: 430 ERWVISGVGD-MMLHPFHIHGTQFRILSENGK----------PPAAHRAGWKDTVKVEGN 478 ER I V D MM HP H+HG + E G PP R+ Sbjct: 3965 ERLRIVLVNDTMMTHPIHLHGMWSDLEDEQGNFLVRKHTIDMPPGTRRS----------- 3819 Query: 479 VSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGM 510 + DA AY HCHLL H + GM Sbjct: 3818 -----YRVTADALGRWAY--HCHLLFHMEMGM 3744 >embl|AE004795|AE004795 Pseudomonas aeruginosa PAO1, section 356 of 529 of the complete genome. Length = 10978 Score = 73.6 bits (179), Expect = 1e-13 Identities = 108/468 (23%), Positives = 175/468 (37%), Gaps = 17/468 (3%) Frame = -3 Query: 61 GKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDXXXXXXX- 119 G ++ Y G G ++ ++G+ + V N+L E TT+HWHG+ +P E+D Sbjct: 10709 GFSSPALAYGGQCPGVELRAKQGEWLRVRFTNRLDEPTTIHWHGIRLPIEMDGVPYISQP 10530 Query: 120 -XXXXKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEIL-----KLMLP 173 + + Q A + W+HPH + Q+ GL G ++IE+ E K++ Sbjct: 10529 PVQPGESFIYQFKTQDAGSYWYHPHL--MSSEQLGRGLVGPLIIEEREPTGFRHEKVLCL 10356 Query: 174 KQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWL-R 232 K W +D+ FS Q A G G NG P P G + R Sbjct: 10355 KTWHVDEQGAFT---PFSVPRQ--------AAREGTRGRYSTINGKHVPTIDLPAGQIVR 10209 Query: 233 LRLLNGCNARS--LNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDN 290 +RLLN N + LN + R + A DG + + + G R E Sbjct: 10208 VRLLNVDNTVTYRLNLPNGEAR---IYAIDGHPVEPRGFEGQYWIGPGMRLE-------- 10062 Query: 291 KPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRK 350 + L V + G ++ D P + I+ +A SA D LPA P E Sbjct: 10061 -----LALKVPEAGTELSLRDGPVRLATIRSVA-SAEAPAGDWPKPLPANPVSE------ 9918 Query: 351 LQLSXXXXXXXXXXXXXXEKYGDQAMAGMDHSQXXXXXXXXXXXXXXXXXKFDFHHANKI 410 + +++ K + +I Sbjct: 9917 --------------------------PDLANAEKIGFRFEWVGAMSDTSGKNPYPSFWQI 9816 Query: 411 NGQAFD------MNKPMFAAAK-GQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPA 463 NG+A++ N P A K GQ + + + HP H+HG F++L + + Sbjct: 9815 NGKAWEGGEEHKHNAPPLAKLKEGQSYIFELRNMAQYQ-HPIHLHGMAFKVLDSDRRDII 9639 Query: 464 AHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMM 511 + + DT + G V D P +M HCH+++H +TG+M Sbjct: 9638 PY---FTDTYLL-GKNETARVALVADNP--GLWMFHCHVIDHMETGLM 9513 >embl|AE004829|AE004829 Pseudomonas aeruginosa PAO1, section 390 of 529 of the complete genome. Length = 10201 Score = 31.6 bits (70), Expect = 0.60 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = -2 Query: 405 HHANKINGQAFDMNKPMFAA-AKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPA 463 HHA + N QAFD P+ AA ++G E + HP H HG ++G PA Sbjct: 2121 HHAEQHNRQAFDQEHPLPAAQSEGVMEAF*DPARKRSADHPGHGHGDG----EQSGDLPA 1954 Query: 464 AHRAGWKDTVKVEGNVSE 481 + R + TV+V+ + E Sbjct: 1953 SARR--EPTVQVDQDTGE 1906 >embl|AE004339|AE004339 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 247 of 251 of the complete chromosome. Length = 10797 Score = 29.3 bits (64), Expect = 3.0 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 5/135 (3%) Frame = -2 Query: 80 LQRGKAVTVDIYNQLTEETTLHWHG-----LEVPGEVDXXXXXXXXXXXKRSVTLNVDQP 134 +++ + +T+ L + T ++W+ ++ PG D SV L VD Sbjct: 10199 IEKERGITI-----LAKNTAINWNDYRINIVDTPGHADFGGEVERIMSMVDSVLLIVDAV 10035 Query: 135 AATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADG 194 P T + A GL +VVI ++I + W +D V + D + D Sbjct: 10034 DGPM---PQTRFVTQKAFAHGLKPIVVI--NKIDRPGARPDWVMDQVFDLF-DNLGATDE 9873 Query: 195 QIDYQLDVMTAAVGW 209 Q+D+Q+ +A GW Sbjct: 9872 QLDFQVVYASALNGW 9828 >embl|AE004478|AE004478 Pseudomonas aeruginosa PAO1, section 39 of 529 of the complete genome. Length = 15580 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 448 HGTQFRILSENGKPPAAHRAGWKDTVKVEGN 478 HG R + GKPPA HR G V +G+ Sbjct: 7004 HGRSRRRAQQRGKPPAHHRCGADPPVGDQGS 7096 >embl|AE004405|AE004405 Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, section 62 of 93 of the complete chromosome. Length = 11351 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 10/55 (18%) Frame = -2 Query: 143 HQHGKTGRQVAMGLAGLVVIEDDE--------ILKLMLPKQW--GIDDVPVIVQD 187 H+ G+TGR GLA ++ D++ +L LP++W G + PV+ ++ Sbjct: 3394 HRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLKGFEPSPVVHEE 3230 Database: 3posl Posted date: Nov 9, 2006 11:05 PM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,002,585 Number of Sequences: 1077 Number of extensions: 129137 Number of successful extensions: 786 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 40 Number of HSP's that attempted gapping in prelim test: 608 Number of HSP's gapped (non-prelim): 254 length of query: 516 length of database: 4,206,551 effective HSP length: 98 effective length of query: 418 effective length of database: 4,101,005 effective search space: 1714220090 effective search space used: 1714220090 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)