BLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= U00096 U00096.2 Escherichia coli K12 MG1655, complete genome. (76 letters) Database: bs 21 sequences; 4,215,470 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value Z99124 Z99124 Bacillus subtilis complete genome (section 21 of 2... 58 9e-10 Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 2... 58 9e-10 Z99106 Z99106 Bacillus subtilis complete genome (section 3 of 21... 58 9e-10 Z99104 Z99104 Bacillus subtilis complete genome (section 1 of 21... 58 9e-10 Z99108 Z99108 Bacillus subtilis complete genome (section 5 of 21... 34 0.013 Z99107 Z99107 Bacillus subtilis complete genome (section 4 of 21... 34 0.013 Z99121 Z99121 Bacillus subtilis complete genome (section 18 of 2... 26 3.2 Z99114 Z99114 Bacillus subtilis complete genome (section 11 of 2... 26 3.2 Z99113 Z99113 Bacillus subtilis complete genome (section 10 of 2... 26 3.2 >Z99124 Z99124 Bacillus subtilis complete genome (section 21 of 21): from 4010730 to 4214630. Length = 203901 Score = 58.0 bits (29), Expect = 9e-10 Identities = 50/57 (87%) Strand = Plus / Minus Query: 7 ttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcct 63 |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 143497 ttagctcagttggtagagcatctgacttttaatcagagggtcgaaggttcgagtcct 143441 Score = 38.2 bits (19), Expect = 9e-04 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tagctcagttggtagagca 26 ||||||||||||||||||| Sbjct: 143146 tagctcagttggtagagca 143128 >Z99119 Z99119 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to 3213379. Length = 199922 Score = 58.0 bits (29), Expect = 9e-10 Identities = 50/57 (87%) Strand = Plus / Minus Query: 7 ttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcct 63 |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 159160 ttagctcagttggtagagcatctgacttttaatcagagggtcgaaggttcgagtcct 159104 Score = 42.1 bits (21), Expect = 5e-05 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ggtcgcaggttcgaatcctgc 65 ||||||||||||||||||||| Sbjct: 157691 ggtcgcaggttcgaatcctgc 157671 Score = 40.1 bits (20), Expect = 2e-04 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ggtcgcaggttcgaatcctg 64 |||||||||||||||||||| Sbjct: 158667 ggtcgcaggttcgaatcctg 158648 Score = 38.2 bits (19), Expect = 9e-04 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tagctcagttggtagagca 26 ||||||||||||||||||| Sbjct: 158082 tagctcagttggtagagca 158064 Score = 36.2 bits (18), Expect = 0.003 Identities = 30/34 (88%) Strand = Plus / Minus Query: 8 tagctcagttggtagagcagttgacttttaatca 41 ||||||| ||||||||||| |||||| |||||| Sbjct: 159272 tagctcaattggtagagcaactgacttgtaatca 159239 Score = 34.2 bits (17), Expect = 0.013 Identities = 20/21 (95%) Strand = Plus / Minus Query: 45 ggtcgcaggttcgaatcctgc 65 |||||||||||| |||||||| Sbjct: 158221 ggtcgcaggttcaaatcctgc 158201 Score = 28.2 bits (14), Expect = 0.82 Identities = 17/18 (94%) Strand = Plus / Minus Query: 45 ggtcgcaggttcgaatcc 62 |||||| ||||||||||| Sbjct: 158945 ggtcgcgggttcgaatcc 158928 Score = 28.2 bits (14), Expect = 0.82 Identities = 14/14 (100%) Strand = Plus / Minus Query: 7 ttagctcagttggt 20 |||||||||||||| Sbjct: 158452 ttagctcagttggt 158439 >Z99106 Z99106 Bacillus subtilis complete genome (section 3 of 21): from 415769 to 611680. Length = 195912 Score = 58.0 bits (29), Expect = 9e-10 Identities = 50/57 (87%) Strand = Plus / Plus Query: 7 ttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcct 63 |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 112886 ttagctcagttggtagagcatctgacttttaatcagagggtcgaaggttcgagtcct 112942 Score = 42.1 bits (21), Expect = 5e-05 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcctgc 65 ||||||||||||||||||||| Sbjct: 112540 ggtcgcaggttcgaatcctgc 112560 >Z99104 Z99104 Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080. Length = 213080 Score = 58.0 bits (29), Expect = 9e-10 Identities = 50/57 (87%) Strand = Plus / Plus Query: 7 ttagctcagttggtagagcagttgacttttaatcaattggtcgcaggttcgaatcct 63 |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 95570 ttagctcagttggtagagcatctgacttttaatcagagggtcgaaggttcgagtcct 95626 Score = 40.1 bits (20), Expect = 2e-04 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcctg 64 |||||||||||||||||||| Sbjct: 166212 ggtcgcaggttcgaatcctg 166231 Score = 40.1 bits (20), Expect = 2e-04 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcctg 64 |||||||||||||||||||| Sbjct: 96102 ggtcgcaggttcgaatcctg 96121 Score = 36.2 bits (18), Expect = 0.003 Identities = 30/34 (88%) Strand = Plus / Plus Query: 8 tagctcagttggtagagcagttgacttttaatca 41 ||||||| ||||||||||| |||||| |||||| Sbjct: 194359 tagctcaattggtagagcaactgacttgtaatca 194392 Score = 36.2 bits (18), Expect = 0.003 Identities = 30/34 (88%) Strand = Plus / Plus Query: 8 tagctcagttggtagagcagttgacttttaatca 41 ||||||| ||||||||||| |||||| |||||| Sbjct: 95459 tagctcaattggtagagcaactgacttgtaatca 95492 Score = 30.2 bits (15), Expect = 0.21 Identities = 18/19 (94%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcct 63 ||||| ||||||||||||| Sbjct: 165796 ggtcgtaggttcgaatcct 165814 Score = 28.2 bits (14), Expect = 0.82 Identities = 17/18 (94%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcc 62 |||||| ||||||||||| Sbjct: 166001 ggtcgcgggttcgaatcc 166018 Score = 28.2 bits (14), Expect = 0.82 Identities = 17/18 (94%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcc 62 |||||| ||||||||||| Sbjct: 95812 ggtcgcgggttcgaatcc 95829 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 33 ttttaatcaattg 45 ||||||||||||| Sbjct: 18858 ttttaatcaattg 18870 >Z99108 Z99108 Bacillus subtilis complete genome (section 5 of 21): from 813670 to 1011078. Length = 197409 Score = 34.2 bits (17), Expect = 0.013 Identities = 20/21 (95%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcctgc 65 |||||||||||| |||||||| Sbjct: 137664 ggtcgcaggttcaaatcctgc 137684 Score = 30.2 bits (15), Expect = 0.21 Identities = 18/19 (94%) Strand = Plus / Plus Query: 8 tagctcagttggtagagca 26 |||||||||||||| |||| Sbjct: 137803 tagctcagttggtaaagca 137821 Score = 30.2 bits (15), Expect = 0.21 Identities = 18/19 (94%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcct 63 ||||| ||||||||||||| Sbjct: 137290 ggtcgtaggttcgaatcct 137308 Score = 28.2 bits (14), Expect = 0.82 Identities = 17/18 (94%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcc 62 |||||| ||||||||||| Sbjct: 138409 ggtcgcgggttcgaatcc 138426 >Z99107 Z99107 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719. Length = 202089 Score = 34.2 bits (17), Expect = 0.013 Identities = 20/21 (95%) Strand = Plus / Plus Query: 45 ggtcgcaggttcgaatcctgc 65 |||||||||||| |||||||| Sbjct: 28230 ggtcgcaggttcaaatcctgc 28250 >Z99121 Z99121 Bacillus subtilis complete genome (section 18 of 21): from 3414339 to 3609030. Length = 194692 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 20 tagagcagttgac 32 ||||||||||||| Sbjct: 190127 tagagcagttgac 190139 >Z99114 Z99114 Bacillus subtilis complete genome (section 11 of 21): from 2014895 to 2207855. Length = 192961 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 33 ttttaatcaattg 45 ||||||||||||| Sbjct: 29385 ttttaatcaattg 29397 >Z99113 Z99113 Bacillus subtilis complete genome (section 10 of 21): from 1807106 to 2014934. Length = 207829 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%) Strand = Plus / Plus Query: 4 tcgttagctcagt 16 ||||||||||||| Sbjct: 17303 tcgttagctcagt 17315 Database: bs Posted date: Oct 8, 2006 12:56 AM Number of letters in database: 4,215,470 Number of sequences in database: 21 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 134 Number of Sequences: 21 Number of extensions: 134 Number of successful extensions: 29 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 29 length of query: 76 length of database: 4,215,470 effective HSP length: 14 effective length of query: 62 effective length of database: 4,215,176 effective search space: 261340912 effective search space used: 261340912 T: 0 A: 0 X1: 11 (21.8 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 13 (26.3 bits)