######################################## # Program: needle # Rundate: Wed Mar 15 2006 15:53:11 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: PGK1_HUMAN # 2: PGK2_HUMAN # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 412 # Identity: 360/412 (87.4%) # Similarity: 390/412 (94.7%) # Gaps: 0/412 ( 0.0%) # Score: 1902.0 # # #======================================= PGK1_HUMAN 1 LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLD 50 ||.|||||||||:||||:||||||||||.|||||||||||::||||:||| PGK2_HUMAN 1 LSKKLTLDKLDVRGKRVIMRVDFNVPMKKNQITNNQRIKASIPSIKYCLD 50 PGK1_HUMAN 51 NGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGP 100 ||||:|||||||||||||||||||||.||||||||||||||||||||||. PGK2_HUMAN 51 NGAKAVVLMSHLGRPDGVPMPDKYSLAPVAVELKSLLGKDVLFLKDCVGA 100 PGK1_HUMAN 101 EVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRA 150 ||||||||||.|||||||||||||||||||:|.||.|:||||.||||||| PGK2_HUMAN 101 EVEKACANPAPGSVILLENLRFHVEEEGKGQDPSGKKIKAEPDKIEAFRA 150 PGK1_HUMAN 151 SLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALE 200 ||||||||||||||||||||||||||||||.||.||||||||:||||||| PGK2_HUMAN 151 SLSKLGDVYVNDAFGTAHRAHSSMVGVNLPHKASGFLMKKELDYFAKALE 200 PGK1_HUMAN 201 SPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNME 250 :|.|||||||||||||||||||.||||||||||||||||:|||||||||| PGK2_HUMAN 201 NPVRPFLAILGGAKVADKIQLIKNMLDKVNEMIIGGGMAYTFLKVLNNME 250 PGK1_HUMAN 251 IGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQAT 300 ||.|||||||||||||:|:||:||||:||.||||||.|||||||:.|:|| PGK2_HUMAN 251 IGASLFDEEGAKIVKDIMAKAQKNGVRITFPVDFVTGDKFDENAQVGKAT 300 PGK1_HUMAN 301 VASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGT 350 |||||..|||||||||||:|.:|:.|.:|:.||||||:|||||:|||:|| PGK2_HUMAN 301 VASGISPGWMGLDCGPESNKNHAQVVAQARLIVWNGPLGVFEWDAFAKGT 350 PGK1_HUMAN 351 KALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLEL 400 ||||||:|||||:||||:|||||||||||||||||||||||||||||||| PGK2_HUMAN 351 KALMDEIVKATSKGCITVIGGGDTATCCAKWNTEDKVSHVSTGGGASLEL 400 PGK1_HUMAN 401 LEGKVLPGVDAL 412 ||||:||||:|| PGK2_HUMAN 401 LEGKILPGVEAL 412 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Wed Mar 15 2006 15:53:11 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: PGK1_HUMAN # 2: PGK_METJA # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 426 # Identity: 153/426 (35.9%) # Similarity: 242/426 (56.8%) # Gaps: 33/426 ( 7.7%) # Score: 583.0 # # #======================================= PGK1_HUMAN 1 LSNKLTLDKLDVKGKRVVMRVDFNVPMKNN--QITNNQRIKAAVPSIKFC 48 :...||||..:.:.||||:|||.|.|:..| :|.:::||:....:|... PGK_METJA 1 MIMFLTLDDFNFEDKRVVLRVDINCPIDPNTGEILDDKRIREIKSTITEL 50 PGK1_HUMAN 49 LDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCV 98 ::.||| ||:::|..||. ..|..:|:..|..|..::||:|.::.:.: PGK_METJA 51 INKGAK-VVILAHQSRPG---KKDFTTLKNHAKVLSDVIGKEVEYIDEVI 96 PGK1_HUMAN 99 GPEVEKACANPAAGSVILLENLRFHVEE---EGKGKDASGNKVKAEPAKI 145 |....:|..|...|.||||||:||:.|| :.|..:....|.:||...| PGK_METJA 97 GSTAREAIINMKCGDVILLENVRFYSEEVLSDWKKWENITPKKQAETNLI 146 PGK1_HUMAN 146 EAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFLMKKELN 193 : .|:.|.|.:|||||..||||..|:||.: :|..||. ||::|:. PGK_METJA 147 K----RLAPLFDYFVNDAFAAAHRAQPSLVGFSYYMPMIAGR-LMEREVG 191 PGK1_HUMAN 194 YFAKALESPERPFLAILGGAKVADKIQLINNMLDK--VNEMIIGGGMAFT 241 ..:|.||:||:|.:.:|||||..|.|:::.|:|:. .::::..|.:|.. PGK_METJA 192 VLSKVLENPEKPCVYVLGGAKADDSIRVMKNVLENGTADKVLTSGIVANI 241 PGK1_HUMAN 242 FLKVLN-----NMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVT 286 ||..:. ||:|..:|..:...:|.|:|::|.|. ||.:|||.. PGK_METJA 242 FLVAMGYDLGVNMDIIENLGLKSQIEIAKELLNKFED---KIVVPVDVA- 287 PGK1_HUMAN 287 ADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNG 336 .:.|.:..:|.:........:..|.|.::.:.|:|.:..||.||.|| PGK_METJA 288 ---LNINEERVEADLNKDEKVEHLINDIGEKTIELYSEIINEAKTIVANG 334 PGK1_HUMAN 337 PVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDK 386 |.||||.||||:||:.|:..: |.|:| .::||||..:.....:...|| PGK_METJA 335 PAGVFEKEAFAKGTEELLKAI--ANSKG-FSVIGGGHLSAAAELFGIADK 381 PGK1_HUMAN 387 VSHVSTGGGASLELLEGKVLPGVDAL 412 :.||||||||:|:.|.|:.||.::.| PGK_METJA 382 IDHVSTGGGATLDFLAGEKLPVIEML 407 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Wed Mar 15 2006 15:53:11 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: PGK1_HUMAN # 2: PGK_ECOLI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 419 # Identity: 154/419 (36.8%) # Similarity: 240/419 (57.3%) # Gaps: 46/419 (11.0%) # Score: 638.0 # # #======================================= PGK1_HUMAN 1 LSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLD 50 :.:.:..||:.||||.:|.|.|||:|:.::|::.||:|::|:|:..|. PGK_ECOLI 1 --SVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALK 48 PGK1_HUMAN 51 NGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCV-G 99 .||| |::.||||||......:::||.||...||..|...|..:||.: | PGK_ECOLI 49 QGAK-VMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG 97 PGK1_HUMAN 100 PEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFR 149 .:| |.|.:::|||:||: :|:.||. |... PGK_ECOLI 98 VDV-------AEGELVVLENVRFN---KGEKKDD------------ETLS 125 PGK1_HUMAN 150 ASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFLMKKELNYFAK 197 ...:.|.||:|.|||||||||.:|..|:. ......|.|:..||:...| PGK_ECOLI 126 KKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGK 175 PGK1_HUMAN 198 ALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLN 247 ||:.|.||.:||:||:||:.|:.:::::....:::|:|||:|.||:.... PGK_ECOLI 176 ALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQG 225 PGK1_HUMAN 248 NMEIGTSLFDEEGAKIVKDLMSKAEK--NGVKITLPVDFVTADKFDENAK 295 : ::|.||:: .||:.:|:: ....|.:|.|...|.:|.| PGK_ECOLI 226 H-DVGKSLYE-------ADLVDEAKRLLTTCNIPVPSDVRVATEFSE--- 264 PGK1_HUMAN 296 TGQATVAS--GIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEW 343 |..||:.| .:.|....||.|..|:::.||.:..||.|:|||||||||: PGK_ECOLI 265 TAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEF 314 PGK1_HUMAN 344 EAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTG 393 ..|.:||:.:.:.:..:.: .:|.|||||......:...||:|::||| PGK_ECOLI 315 PNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTG 361 PGK1_HUMAN 394 GGASLELLEGKVLPGVDAL 412 |||.||.:||||||.|..| PGK_ECOLI 362 GGAFLEFVEGKVLPAVAML 380 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Wed Mar 15 2006 15:53:11 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: PGK2_HUMAN # 2: PGK_METJA # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 426 # Identity: 150/426 (35.2%) # Similarity: 242/426 (56.8%) # Gaps: 33/426 ( 7.7%) # Score: 564.0 # # #======================================= PGK2_HUMAN 1 LSKKLTLDKLDVRGKRVIMRVDFNVPMKKN--QITNNQRIKASIPSIKYC 48 :...||||..:...|||::|||.|.|:..| :|.:::||:....:|... PGK_METJA 1 MIMFLTLDDFNFEDKRVVLRVDINCPIDPNTGEILDDKRIREIKSTITEL 50 PGK2_HUMAN 49 LDNGAKAVVLMSHLGRPDGVPMPDKYSLAPVAVELKSLLGKDVLFLKDCV 98 ::.||| ||:::|..||. ..|..:|...|..|..::||:|.::.:.: PGK_METJA 51 INKGAK-VVILAHQSRPG---KKDFTTLKNHAKVLSDVIGKEVEYIDEVI 96 PGK2_HUMAN 99 GAEVEKACANPAPGSVILLENLRFHVEE---EGKGQDPSGKKIKAEPDKI 145 |:...:|..|...|.||||||:||:.|| :.|..:....|.:||.:.| PGK_METJA 97 GSTAREAIINMKCGDVILLENVRFYSEEVLSDWKKWENITPKKQAETNLI 146 PGK2_HUMAN 146 EAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPHKASGFLMKKELD 193 : .|:.|.|.:|||||..||||..|:||.: :| ..:|.||::|:. PGK_METJA 147 K----RLAPLFDYFVNDAFAAAHRAQPSLVGFSYYMP-MIAGRLMEREVG 191 PGK2_HUMAN 194 YFAKALENPVRPFLAILGGAKVADKIQLIKNMLDK--VNEMIIGGGMAYT 241 ..:|.||||.:|.:.:|||||..|.|:::||:|:. .::::..|.:|.. PGK_METJA 192 VLSKVLENPEKPCVYVLGGAKADDSIRVMKNVLENGTADKVLTSGIVANI 241 PGK2_HUMAN 242 FLKVLN-----NMEIGASLFDEEGAKIVKDIMAKAQKNGVRITFPVDFVT 286 ||..:. ||:|..:|..:...:|.|:::.|.:. :|..|||.. PGK_METJA 242 FLVAMGYDLGVNMDIIENLGLKSQIEIAKELLNKFED---KIVVPVDVA- 287 PGK2_HUMAN 287 GDKFDENAQVGKATVASGISPGWMGLDCGPESNKNHAQVVAQARLIVWNG 336 .:.|.:..:|.:........:..|.|.::.:.:::::.:|:.||.|| PGK_METJA 288 ---LNINEERVEADLNKDEKVEHLINDIGEKTIELYSEIINEAKTIVANG 334 PGK2_HUMAN 337 PLGVFEWDAFAKGTKALMDEIVKATSKGCITVIGGGDTATCCAKWNTEDK 386 |.||||.:||||||:.|:..| |.||| .:|||||..:.....:...|| PGK_METJA 335 PAGVFEKEAFAKGTEELLKAI--ANSKG-FSVIGGGHLSAAAELFGIADK 381 PGK2_HUMAN 387 VSHVSTGGGASLELLEGKILPGVEAL 412 :.||||||||:|:.|.|:.||.:|.| PGK_METJA 382 IDHVSTGGGATLDFLAGEKLPVIEML 407 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Wed Mar 15 2006 15:53:11 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: PGK2_HUMAN # 2: PGK_ECOLI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 417 # Identity: 153/417 (36.7%) # Similarity: 233/417 (55.9%) # Gaps: 42/417 (10.1%) # Score: 627.0 # # #======================================= PGK2_HUMAN 1 LSKKLTLDKLDVRGKRVIMRVDFNVPMKKNQITNNQRIKASIPSIKYCLD 50 ..:.:..||:.||||.:|.|.|||:|..::|::.||:||:|:|:..|. PGK_ECOLI 1 --SVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALK 48 PGK2_HUMAN 51 NGAKAVVLMSHLGRPDGVPMPDKYSLAPVAVELKSLLGKDVLFLKDCV-G 99 .||| |::.||||||......:::||.||...||..|...|..:||.: | PGK_ECOLI 49 QGAK-VMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG 97 PGK2_HUMAN 100 AEVEKACANPAPGSVILLENLRFHVEEEGKGQDPSGKKIKAEPDKIEAFR 149 .:| |.|.:::|||:||: :.|.|..:...||..| PGK_ECOLI 98 VDV-------AEGELVVLENVRFN-KGEKKDDETLSKKYAA--------- 130 PGK2_HUMAN 150 ASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPHKASGFLMKKELDYFAK 197 |.||:|.|||||||||.:|..|:. .....:|.|:..|||...| PGK_ECOLI 131 -----LCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDALGK 175 PGK2_HUMAN 198 ALENPVRPFLAILGGAKVADKIQLIKNMLDKVNEMIIGGGMAYTFLKVLN 247 ||:.|.||.:||:||:||:.|:.::.::....:::|:|||:|.||:.... PGK_ECOLI 176 ALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQG 225 PGK2_HUMAN 248 NMEIGASLFDEEGAKIVKDIMAKAQKNGVRITFPVDFVTGDKFDENAQVG 297 : ::|.||:: |.:|.: ||.......|..|.|.....:|.|.| PGK_ECOLI 226 H-DVGKSLYE---ADLVDE--AKRLLTTCNIPVPSDVRVATEFSETA--- 266 PGK2_HUMAN 298 KATVAS--GISPGWMGLDCGPESNKNHAQVVAQARLIVWNGPLGVFEWDA 345 .||:.| .:......||.|..|.:..|:::..|:.|:||||:||||:.. PGK_ECOLI 267 PATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPN 316 PGK2_HUMAN 346 FAKGTKALMDEIVKATSKGCITVIGGGDTATCCAKWNTEDKVSHVSTGGG 395 |.|||:.:.:.|..:.: .::.|||||......:...||:|::||||| PGK_ECOLI 317 FRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGG 363 PGK2_HUMAN 396 ASLELLEGKILPGVEAL 412 |.||.:|||:||.|..| PGK_ECOLI 364 AFLEFVEGKVLPAVAML 380 #--------------------------------------- #--------------------------------------- ######################################## # Program: needle # Rundate: Wed Mar 15 2006 15:53:11 # Align_format: srspair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: PGK_METJA # 2: PGK_ECOLI # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 421 # Identity: 153/421 (36.3%) # Similarity: 227/421 (53.9%) # Gaps: 55/421 (13.1%) # Score: 596.5 # # #======================================= PGK_METJA 1 MIMFLTLDDFNFEDKRVVLRVDINCPIDPNTGEILDDKRIREIKSTITEL 50 ..:.:.|.:...|||.:|.|:|.|: ..|::..|.|||....||... PGK_ECOLI 1 --SVIKMTDLDLAGKRVFIRADLNVPV--KDGKVTSDARIRASLPTIELA 46 PGK_METJA 51 INKGAKVVILAHQSRPGK----KDFTTLK--NHAK-VLSDVIGKEVEYID 93 :.:||||::.:|..||.: ::|:.|. |:.| .||:.:....:|:| PGK_ECOLI 47 LKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLD 96 PGK_METJA 94 EVIGSTAREAIINMKCGDVILLENVRFYSEEVLSDWKKWENITPKKQAET 143 .| ::..|::::||||||...| ||..|| PGK_ECOLI 97 GV----------DVAEGELVVLENVRFNKGE-------------KKDDET 123 PGK_METJA 144 NLIKRLAPLFDYFVNDAFAAAHRAQPSLVGFSYYMPM-IAGRLMEREVGV 192 |.|:.|.|.|.||.|||..|||||.|..|...:..: .||.|:..|:.. PGK_ECOLI 124 -LSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELDA 172 PGK_METJA 193 LSKVLENPEKPCVYVLGGAKADDSIRVMKNVLENGTADKVLTSGIVANIF 242 |.|.|:.|.:|.|.::||:|....:.|:.:: :..||:::..|.:||.| PGK_ECOLI 173 LGKALKEPARPMVAIVGGSKVSTKLTVLDSL--SKIADQLIVGGGIANTF 220 PGK_METJA 243 LVAMGYDLGVNM---DIIENLGLKSQIEIAKELLNKFEDKIVVPVDVALN 289 :.|.|:|:|.:: |:::. ||.||... .|.||.||.:. PGK_ECOLI 221 IAAQGHDVGKSLYEADLVDE---------AKRLLTTC--NIPVPSDVRVA 259 PGK_METJA 290 IN-EERVEADLN--KDEKVEHLINDIGEKTIELYSEIINEAKTIVANGPA 336 .. .|...|.|. .|.|.:..|.|||:.:.:..:||:..||||:.|||. PGK_ECOLI 260 TEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPV 309 PGK_METJA 337 GVFEKEAFAKGTEELLKAIANSKGFSVIGGGHLSAAAELFGIADKIDHVS 386 ||||...|.||||.:..|||:|:.||:.|||...||.:||||||||.::| PGK_ECOLI 310 GVFEFPNFRKGTEIVANAIADSEAFSIAGGGDTLAAIDLFGIADKISYIS 359 PGK_METJA 387 TGGGATLDFLAGEKLPVIEML 407 |||||.|:|:.|:.||.:.|| PGK_ECOLI 360 TGGGAFLEFVEGKVLPAVAML 380 #--------------------------------------- #---------------------------------------