TBLASTN 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= GLMS, glutamine amidotransferase
(609 letters)
Database: 3g
1077 sequences; 12,619,654 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
embl|AE004135|AE004135 Vibrio cholerae O1 biovar eltor str. N169... 847 0.0
embl|AE006210|AE006210 Pasteurella multocida subsp. multocida st... 826 0.0
embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 ... 743 0.0
embl|AE004794|AE004794 Pseudomonas aeruginosa PAO1, section 355 ... 121 5e-28
embl|AE006107|AE006107 Pasteurella multocida subsp. multocida st... 70 1e-12
embl|AE004182|AE004182 Vibrio cholerae O1 biovar eltor str. N169... 67 2e-11
embl|AE004735|AE004735 Pseudomonas aeruginosa PAO1, section 296 ... 54 1e-07
embl|AE004180|AE004180 Vibrio cholerae O1 biovar eltor str. N169... 42 7e-04
embl|AE004445|AE004445 Pseudomonas aeruginosa PAO1, section 6 of... 40 0.002
embl|AE004322|AE004322 Vibrio cholerae O1 biovar eltor str. N169... 39 0.006
embl|AE006195|AE006195 Pasteurella multocida subsp. multocida st... 38 0.008
>embl|AE004135|AE004135 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 43 of 251 of the complete
chromosome.
Length = 12614
Score = 847 bits (2189), Expect = 0.0
Identities = 426/610 (69%), Positives = 496/610 (81%), Gaps = 1/610 (0%)
Frame = +1
Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60
MCGIVGA+AQRDVAEI DSAG+AVVD++ +TRLRRLGKVQ LA A E
Sbjct: 3073 MCGIVGAVAQRDVAEILVQGLRRLEYRGYDSAGVAVVDSDKQLTRLRRLGKVQELADAVE 3252
Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV 120
+ GGTGIAHTRWATHGEPSE+NAHPH+S I VVHNGIIENHE LR L+ RGY F
Sbjct: 3253 AAQVAGGTGIAHTRWATHGEPSEINAHPHISGDITVVHNGIIENHEMLRTMLQDRGYVFT 3432
Query: 121 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV 180
S+TDTEVIAHLV WEL+ +L EAV + QL GAYGTV+MD P L+ ARSGSP+V
Sbjct: 3433 SQTDTEVIAHLVEWELRSASSLLEAVQTTVKQLTGAYGTVVMDRNDPSRLVVARSGSPIV 3612
Query: 181 IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ 240
IG G+GENF+ASDQLALL VTRRF++LEEGD+AE+TRR V +FD G V+R+ ESNL+
Sbjct: 3613 IGFGIGENFLASDQLALLNVTRRFMYLEEGDVAEMTRRDVRVFDALGQPVQREISESNLE 3792
Query: 241 YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA 300
+DA DKG YRHYMQKEI+EQP A+ NT+ GRI+H V + +G +A E+L+KVEH+QI+A
Sbjct: 3793 HDAADKGHYRHYMQKEIFEQPKALINTMEGRITHDCVVVESIGVHAAEILAKVEHVQIVA 3972
Query: 301 CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL 360
CGTSYN+GM +RYWFESLAG+ CDVEIASEFRYRK R NSL+ITLSQSGETADTLA L
Sbjct: 3973 CGTSYNAGMTARYWFESLAGVSCDVEIASEFRYRKFVTRPNSLLITLSQSGETADTLAAL 4152
Query: 361 RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL 420
RL+KE GY+ ++ ICNV GSSLVRESD A MT AGTEIGVASTKAFTTQL LLMLV L
Sbjct: 4153 RLAKEKGYMAAMTICNVAGSSLVRESDFAFMTRAGTEIGVASTKAFTTQLVTLLMLVTAL 4332
Query: 421 SR-LKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPI 479
+ + + +E +IVH L LP +IE LS +K+IE LAEDF+DKHH LFLGRG+ YPI
Sbjct: 4333 GKQQQRIGRELEAEIVHALHQLPKQIETALSFEKQIETLAEDFADKHHTLFLGRGEYYPI 4512
Query: 480 ALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRA 539
A+E +LKLKEISYIHAEAYAAGELKHGPLALIDADMPV+VVAP+NELLEKLKSNIEEVRA
Sbjct: 4513 AVEASLKLKEISYIHAEAYAAGELKHGPLALIDADMPVVVVAPSNELLEKLKSNIEEVRA 4692
Query: 540 RGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQP 599
RGG LYVFAD+ AGF + + M II MPHV E++API+YT+P+QLL+YHVALIKGTDVDQP
Sbjct: 4693 RGGLLYVFADEVAGFEADETMKIIAMPHVSEIVAPIYYTIPMQLLSYHVALIKGTDVDQP 4872
Query: 600 RNLAKSVTVE 609
RNLAK+VTVE
Sbjct: 4873 RNLAKAVTVE 4902
>embl|AE006210|AE006210 Pasteurella multocida subsp. multocida str.
Pm70 section 177 of 204 of the complete genome.
Length = 13962
Score = 826 bits (2134), Expect = 0.0
Identities = 419/610 (68%), Positives = 498/610 (81%), Gaps = 1/610 (0%)
Frame = -1
Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60
MCGIVGAIAQRDVAEI DSAG+A+VD E + R+R LGKVQ+LA+A
Sbjct: 6393 MCGIVGAIAQRDVAEILVNGLHRLEYRGYDSAGIAIVDQEKRLQRVRCLGKVQVLAEAVA 6214
Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV 120
+ GGTGIAHTRWATHG PSE NAHPHVS VVHNGIIEN+E LR +L+ +GY F+
Sbjct: 6213 AEKITGGTGIAHTRWATHGAPSEDNAHPHVSGQFAVVHNGIIENYEQLRIDLQQKGYQFL 6034
Query: 121 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV 180
S+TDTEVIAHLV+W ++ +L AV + + QL+GAYG V+MD P+ L+AARSGSPLV
Sbjct: 6033 SQTDTEVIAHLVHWVMRNETSLLRAVQQVVKQLKGAYGMVVMDCEQPNHLVAARSGSPLV 5854
Query: 181 IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ 240
IGLG+GENF+ASDQLALL VTRRFIFLEEGD+AEITRR+V+I+D G V+R +S+L
Sbjct: 5853 IGLGIGENFLASDQLALLNVTRRFIFLEEGDVAEITRRTVDIYDVNGHPVQRDSQDSHLT 5674
Query: 241 YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA 300
+DA +KG +RH+MQKEI+EQP AI NTL GR+ V + +G A+ LL +VEHIQI+A
Sbjct: 5673 HDATEKGTFRHFMQKEIFEQPRAILNTLEGRLHQHNVLVDSIGNGAERLLEQVEHIQIVA 5494
Query: 301 CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL 360
CGTSYN+GMV+RYWFE LAGI CDVEIASEFRYRK R SL+ITLSQSGETADTLA L
Sbjct: 5493 CGTSYNAGMVARYWFEHLAGISCDVEIASEFRYRKFVTRPKSLLITLSQSGETADTLAAL 5314
Query: 361 RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL 420
RL+KE GY+G++ ICNV GSSLVRESDLA MT AG EIGVASTKAFTTQL LLMLV +
Sbjct: 5313 RLAKEKGYMGAMTICNVAGSSLVRESDLAFMTRAGVEIGVASTKAFTTQLATLLMLVIAI 5134
Query: 421 SRLKG-LDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPI 479
++ G + S E ++V LQ+LP+ IE+ L+ +++IE+LA+DF+DKHHALFLGRG+ YPI
Sbjct: 5133 GKVTGNISLSQEEELVKALQSLPAEIEKALAFNQQIESLAQDFADKHHALFLGRGEYYPI 4954
Query: 480 ALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRA 539
A+EGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAP N+LLEK+KSNIEEVR+
Sbjct: 4953 AMEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPTNDLLEKVKSNIEEVRS 4774
Query: 540 RGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQP 599
RGGQLYVFAD++AGF ++ M I+ MP V EVIAPIFYT+P+QLLAYHVALIKGTDVDQP
Sbjct: 4773 RGGQLYVFADKEAGFTETEGMKIMTMPKVNEVIAPIFYTIPMQLLAYHVALIKGTDVDQP 4594
Query: 600 RNLAKSVTVE 609
RNLAK+VTVE
Sbjct: 4593 RNLAKAVTVE 4564
>embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 of
529 of the complete genome.
Length = 16662
Score = 743 bits (1917), Expect = 0.0
Identities = 372/611 (60%), Positives = 471/611 (77%), Gaps = 2/611 (0%)
Frame = -2
Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60
MCGIVGAIA+R++ I DSAG+AV D EG + R RR+GKV L +
Sbjct: 6689 MCGIVGAIAERNITPILIEGLKRLEYRGYDSAGVAVFDNEGRLQRCRRVGKVASLEEGLA 6510
Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVS-EHIVVVHNGIIENHEPLREELKARGYTF 119
PL G GIAHTRWATHG P+E NAHPH S + + VVHNGIIENHEPLRE LK GY F
Sbjct: 6509 GTPLLGRLGIAHTRWATHGAPTEGNAHPHFSSDEVAVVHNGIIENHEPLRERLKGLGYVF 6330
Query: 120 VSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPL 179
S+TDTEVI HL++ +L+ G L A+ A+ +L GAYG ++ + PD ++AARSGSPL
Sbjct: 6329 TSQTDTEVIVHLLHHKLQSIGDLTLALKDAVKELHGAYGLAVISAAQPDRIVAARSGSPL 6150
Query: 180 VIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNL 239
VIGLG+GENF+ASDQLAL VT RFI+LEEGDIAEI R SV ++D G +V+R+ ++ +
Sbjct: 6149 VIGLGLGENFLASDQLALRQVTDRFIYLEEGDIAEIRRDSVRLWDVQGNDVQRETVQYHE 5970
Query: 240 QYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQIL 299
+A DKG YRH+M KEI+EQP+ ++ TL GR+ QV + GP A EL +KV ++QI+
Sbjct: 5969 GAEAADKGEYRHFMLKEIHEQPSVVQRTLEGRLGQNQVLVESFGPQAAELFAKVRNVQIV 5790
Query: 300 ACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAG 359
ACGTSY++GMV+RYW ESL GIPC VE+ASEFRYRK AV+ + L +T+SQSGETADTLA
Sbjct: 5789 ACGTSYHAGMVARYWLESLTGIPCQVEVASEFRYRKVAVQPDCLFVTISQSGETADTLAA 5610
Query: 360 LRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAK 419
LR +KELG+L S+AICNV SSLVRESDL L+T AG EIGVASTKAFTTQL LL+L
Sbjct: 5609 LRNAKELGFLSSVAICNVATSSLVRESDLTLLTQAGPEIGVASTKAFTTQLVALLLLTLG 5430
Query: 420 LSRL-KGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYP 478
+ ++ K L +E ++V L+ LP+R+ + L+ ++ +E ++E F++KHH LFLGRG Q+P
Sbjct: 5429 IGQVQKRLADGVEAELVDELRRLPTRLGEALAMNRTVEKVSELFAEKHHTLFLGRGAQFP 5250
Query: 479 IALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVR 538
+ALEGALKLKEISYIHAEAY AGELKHGPLAL+D+DMPV+ VAPNNEL+EKLKSN++EVR
Sbjct: 5249 VALEGALKLKEISYIHAEAYPAGELKHGPLALVDSDMPVVTVAPNNELVEKLKSNLQEVR 5070
Query: 539 ARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQ 598
ARGG+L VFAD+ AG + + H++ MPH+ +V++PI YT+PLQLL+YHVA++KGTDVDQ
Sbjct: 5069 ARGGELVVFADEGAGIEAGEGTHVVGMPHIGDVLSPILYTIPLQLLSYHVAVLKGTDVDQ 4890
Query: 599 PRNLAKSVTVE 609
PRNLAKSVTVE
Sbjct: 4889 PRNLAKSVTVE 4857
>embl|AE004794|AE004794 Pseudomonas aeruginosa PAO1, section 355 of
529 of the complete genome.
Length = 13621
Score = 121 bits (304), Expect = 5e-28
Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 1/307 (0%)
Frame = +3
Query: 299 LACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVR-RNSLMITLSQSGETADTL 357
+A G+S ++ Y AG+P S +S +R + SQSG++ D +
Sbjct: 8319 VARGSSDHAASYFAYLAMQHAGLPVASLPMSVVTLNRSPLRVAGQAVFAFSQSGQSPDLV 8498
Query: 358 AGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 417
LR+ +E G LG +A+ N S L S+ + AG E VA+TK+F L+ L+
Sbjct: 8499 DSLRILRERGALG-IALVNAEDSPLEAASEFVVPLCAGAERSVAATKSFIATLSASARLL 8675
Query: 418 AKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQY 477
A R ++ ++ Q L + +EQ D E D + +GRG Y
Sbjct: 8676 AHWQR--------DNALLAAGQGLAAGLEQAARLDW--SPAIEVLRDCQRLMVIGRGAGY 8825
Query: 478 PIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEV 537
IA E ALK KE S I AEA+++ E++HGP+AL++ P++V AP E L + E++
Sbjct: 8826 AIAQEAALKFKETSAIQAEAFSSAEVRHGPMALVEERYPLLVFAPRGPEQEGLLALAEDM 9005
Query: 538 RARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVD 597
R RG Q+ + A D ++ ++ + H + PI ++A +A +G D D
Sbjct: 9006 RQRGAQVLLAAPDD---IAERDLPLQRAAH--PALDPILAIQSFYVMAAGLAEARGMDPD 9170
Query: 598 QPRNLAK 604
QPR+L+K
Sbjct: 9171 QPRHLSK 9191
>embl|AE006107|AE006107 Pasteurella multocida subsp. multocida str.
Pm70 section 74 of 204 of the complete genome.
Length = 12832
Score = 70.5 bits (171), Expect = 1e-12
Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 16/221 (7%)
Frame = -3
Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60
MCGIVG ++Q V + D+AG+ VD E + G V + +
Sbjct: 1625 MCGIVGIVSQSPVNQSIYDALTLLQHRGQDAAGIVTVDDENRFRLRKANGLVSDVFEQVH 1446
Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEH---IVVVHNGIIENHEPLREELKARGY 117
L G GI H R+ T G S A P + +VHNG + N L+E+L R
Sbjct: 1445 MLRLQGNAGIGHVRYPTAGSSSVSEAQPFYVNSPYGLTLVHNGNLTNSSELKEKLFRRAR 1266
Query: 118 TFV-SETDTEVIA-----HLVNWELKQ--GGTLREAVLRAIPQLRGAYGTVIMDSRHPDT 169
V + +D+E++ HL ++E Q + AV + +RGAY + M H
Sbjct: 1265 RHVNTNSDSELLLNILANHLDHFEKYQLDPQDVFSAVKQTHQDIRGAYACIAMIIGHGMV 1086
Query: 170 LLAARSG-SPLVIGL----GMGENFIASDQLALLPVTRRFI 205
+G PLV+G G E AS+ +AL V F+
Sbjct: 1085 AFRDPNGIRPLVLGKREENGKTEYMFASESIALDTVGFEFV 963
>embl|AE004182|AE004182 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 90 of 251 of the complete
chromosome.
Length = 9978
Score = 67.0 bits (162), Expect = 2e-11
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 16/221 (7%)
Frame = +1
Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRL-GKVQMLAQAA 59
MCGIVG + V + D+AG+ + E + RLR+ G V+ + +A
Sbjct: 4480 MCGIVGIVGTTPVNQSIYDALTVLQHRGQDAAGICTI--ESNRFRLRKANGLVRDVFEAK 4653
Query: 60 EEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEH---IVVVHNGIIENHEPLREELKARG 116
L G GI H R+ T G S A P I + HNG + N +R++L +
Sbjct: 4654 HMQRLQGNVGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNANQVRQKLFEKD 4833
Query: 117 YTFVSET-DTEVIAHLVNWELK--QGGTLREAVLRAIPQ----LRGAYGTVIMDSRHPDT 169
V+ T D+EV+ +++ E+ +G + V RAI +RGAY M H
Sbjct: 4834 RRHVNTTSDSEVLLNVLAHEIDTVKGNVTADDVFRAISNVHRTIRGAYAVAAMIIGHGMI 5013
Query: 170 LLAARSG-SPLVIGL----GMGENFIASDQLALLPVTRRFI 205
G PL +G G E +AS+ +AL V F+
Sbjct: 5014 AFRDPHGIRPLCLGKREVNGQLEYMVASESVALDAVGFDFV 5136
>embl|AE004735|AE004735 Pseudomonas aeruginosa PAO1, section 296 of
529 of the complete genome.
Length = 11976
Score = 53.9 bits (128), Expect = 1e-07
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 18/215 (8%)
Frame = -3
Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60
MCGIVG + + +V + D+AG+ + R + G V+ + Q
Sbjct: 3571 MCGIVGIVGKSNVNQALYDALTVLQHRGQDAAGIVTCHDDKLYLR-KDNGLVRDVFQQRH 3395
Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEH---IVVVHNGIIENHEPLREELKARGY 117
L G GI H R+ T G S A P I + HNG + N E L +E+
Sbjct: 3394 MQRLIGSVGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNVEQLAKEIYESDL 3215
Query: 118 TFV-SETDTEVIAHLVNWELKQGGTLR---EAVLRAIPQLR----GAYGTVIMDSRHPDT 169
V + +D+EV+ ++ EL L+ E + A+ + G Y V M + H
Sbjct: 3214 RHVNTNSDSEVLLNVFAHELAVRNKLQPTEEDIFAAVSCVHDRCVGGYAVVAMITGH--G 3041
Query: 170 LLAARSGS---PLVIGLGMGEN----FIASDQLAL 197
++ R + P+V G EN IAS+ +AL
Sbjct: 3040 IVGFRDPNAIRPIVFGQRHTENGVEYMIASESVAL 2936
>embl|AE004180|AE004180 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 88 of 251 of the complete
chromosome.
Length = 10377
Score = 41.6 bits (96), Expect = 7e-04
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Frame = -3
Query: 70 IAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIA 129
+AH R A G S +++ NG I NH+ +RE K + Y F +++D EVI
Sbjct: 8383 LAHERLAIVGLNSGAQPLYSPDRKLILAVNGEIYNHKEIRERYKGQ-YEFQTDSDCEVIL 8207
Query: 130 HLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGEN- 188
L +G L E +L G + V+ D + L+ + + G E+
Sbjct: 8206 ALYR---DKGADLLE-------ELNGIFAFVLYDEEKDEYLIGRDHIGIIPLYQGHDEHG 8057
Query: 189 --FIASDQLALLPVTR 202
++AS+ AL+PV +
Sbjct: 8056 NFYVASEMKALVPVCK 8009
>embl|AE004445|AE004445 Pseudomonas aeruginosa PAO1, section 6 of 529
of the complete genome.
Length = 10261
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 92 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIP 151
+ + +V+ G + NH+ LRE L+ G+ F + +DTEV+ H L+ G R
Sbjct: 1510 QEVTLVYTGEVYNHDALRERLRRAGHEFRTRSDTEVVLHAY---LQWGE-------RCCE 1659
Query: 152 QLRGAYGTVIMDSRHPDTLL 171
L G + + D R LL
Sbjct: 1660 YLTGMFAFAVFDGRDGHLLL 1719
>embl|AE004322|AE004322 Vibrio cholerae O1 biovar eltor str. N16961
chromosome I, section 230 of 251 of the complete
chromosome.
Length = 11328
Score = 38.5 bits (88), Expect = 0.006
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Frame = +3
Query: 338 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTE 397
+ R +++ +S SGE+++ LA L + K L + +++ P S++ + +D+ L E
Sbjct: 1845 IERGDIVLAISNSGESSEILALLPVLKRLS-IRVISMTGNPNSNMAKLADIHLQITVPRE 2021
Query: 398 ---IGVASTKAFTTQLTVLLMLVAKLSRLKGL---DASIEH--------------DIVHG 437
+ +A T + T L + L L + +G D ++ H DI+H
Sbjct: 2022 ACPLELAPTSSTTATLVMGDALAVALMQARGFTAEDFALSHPGGALGRKLLLKLNDIMHS 2201
Query: 438 LQALPSRIEQMLSQDKRIE 456
ALP Q L +D +E
Sbjct: 2202 GDALPKVAPQALIRDALLE 2258
>embl|AE006195|AE006195 Pasteurella multocida subsp. multocida str.
Pm70 section 162 of 204 of the complete genome.
Length = 10582
Score = 38.1 bits (87), Expect = 0.008
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = -2
Query: 324 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLV 383
D A E R A+ +++ ++ SG T LAG+ + +G + CN P S+L
Sbjct: 2121 DDRSAGEQDLRNLALNEKDVVVGIAASGRTPYVLAGIEYANHVGCVTVGISCN-PDSALA 1945
Query: 384 RESDLALMTNAGTEI--GVASTKAFTTQLTVLLML 416
+++A+ G E+ G + KA T Q +L ML
Sbjct: 1944 ALANIAITPIVGPEVITGSSRMKAGTAQKLILNML 1840
Database: 3g
Posted date: Sep 19, 2006 6:49 PM
Number of letters in database: 12,619,654
Number of sequences in database: 1077
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,906,785
Number of Sequences: 1077
Number of extensions: 117485
Number of successful extensions: 719
Number of sequences better than 1.0e-02: 11
Number of HSP's better than 0.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 252
length of query: 609
length of database: 4,206,551
effective HSP length: 99
effective length of query: 510
effective length of database: 4,099,928
effective search space: 2090963280
effective search space used: 2090963280
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 86 (37.7 bits)