TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= GLMS, glutamine amidotransferase (609 letters) Database: pa 529 sequences; 6,296,083 total letters Searching..done Score E Sequences producing significant alignments: (bits) Value embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 ... 743 0.0 embl|AE004794|AE004794 Pseudomonas aeruginosa PAO1, section 355 ... 121 3e-28 embl|AE004735|AE004735 Pseudomonas aeruginosa PAO1, section 296 ... 54 7e-08 embl|AE004445|AE004445 Pseudomonas aeruginosa PAO1, section 6 of... 40 0.001 >embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 of 529 of the complete genome. Length = 16662 Score = 743 bits (1917), Expect = 0.0 Identities = 372/611 (60%), Positives = 471/611 (77%), Gaps = 2/611 (0%) Frame = -2 Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60 MCGIVGAIA+R++ I DSAG+AV D EG + R RR+GKV L + Sbjct: 6689 MCGIVGAIAERNITPILIEGLKRLEYRGYDSAGVAVFDNEGRLQRCRRVGKVASLEEGLA 6510 Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVS-EHIVVVHNGIIENHEPLREELKARGYTF 119 PL G GIAHTRWATHG P+E NAHPH S + + VVHNGIIENHEPLRE LK GY F Sbjct: 6509 GTPLLGRLGIAHTRWATHGAPTEGNAHPHFSSDEVAVVHNGIIENHEPLRERLKGLGYVF 6330 Query: 120 VSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPL 179 S+TDTEVI HL++ +L+ G L A+ A+ +L GAYG ++ + PD ++AARSGSPL Sbjct: 6329 TSQTDTEVIVHLLHHKLQSIGDLTLALKDAVKELHGAYGLAVISAAQPDRIVAARSGSPL 6150 Query: 180 VIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNL 239 VIGLG+GENF+ASDQLAL VT RFI+LEEGDIAEI R SV ++D G +V+R+ ++ + Sbjct: 6149 VIGLGLGENFLASDQLALRQVTDRFIYLEEGDIAEIRRDSVRLWDVQGNDVQRETVQYHE 5970 Query: 240 QYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQIL 299 +A DKG YRH+M KEI+EQP+ ++ TL GR+ QV + GP A EL +KV ++QI+ Sbjct: 5969 GAEAADKGEYRHFMLKEIHEQPSVVQRTLEGRLGQNQVLVESFGPQAAELFAKVRNVQIV 5790 Query: 300 ACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAG 359 ACGTSY++GMV+RYW ESL GIPC VE+ASEFRYRK AV+ + L +T+SQSGETADTLA Sbjct: 5789 ACGTSYHAGMVARYWLESLTGIPCQVEVASEFRYRKVAVQPDCLFVTISQSGETADTLAA 5610 Query: 360 LRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAK 419 LR +KELG+L S+AICNV SSLVRESDL L+T AG EIGVASTKAFTTQL LL+L Sbjct: 5609 LRNAKELGFLSSVAICNVATSSLVRESDLTLLTQAGPEIGVASTKAFTTQLVALLLLTLG 5430 Query: 420 LSRL-KGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYP 478 + ++ K L +E ++V L+ LP+R+ + L+ ++ +E ++E F++KHH LFLGRG Q+P Sbjct: 5429 IGQVQKRLADGVEAELVDELRRLPTRLGEALAMNRTVEKVSELFAEKHHTLFLGRGAQFP 5250 Query: 479 IALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVR 538 +ALEGALKLKEISYIHAEAY AGELKHGPLAL+D+DMPV+ VAPNNEL+EKLKSN++EVR Sbjct: 5249 VALEGALKLKEISYIHAEAYPAGELKHGPLALVDSDMPVVTVAPNNELVEKLKSNLQEVR 5070 Query: 539 ARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQ 598 ARGG+L VFAD+ AG + + H++ MPH+ +V++PI YT+PLQLL+YHVA++KGTDVDQ Sbjct: 5069 ARGGELVVFADEGAGIEAGEGTHVVGMPHIGDVLSPILYTIPLQLLSYHVAVLKGTDVDQ 4890 Query: 599 PRNLAKSVTVE 609 PRNLAKSVTVE Sbjct: 4889 PRNLAKSVTVE 4857 >embl|AE004794|AE004794 Pseudomonas aeruginosa PAO1, section 355 of 529 of the complete genome. Length = 13621 Score = 121 bits (304), Expect = 3e-28 Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 1/307 (0%) Frame = +3 Query: 299 LACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVR-RNSLMITLSQSGETADTL 357 +A G+S ++ Y AG+P S +S +R + SQSG++ D + Sbjct: 8319 VARGSSDHAASYFAYLAMQHAGLPVASLPMSVVTLNRSPLRVAGQAVFAFSQSGQSPDLV 8498 Query: 358 AGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 417 LR+ +E G LG +A+ N S L S+ + AG E VA+TK+F L+ L+ Sbjct: 8499 DSLRILRERGALG-IALVNAEDSPLEAASEFVVPLCAGAERSVAATKSFIATLSASARLL 8675 Query: 418 AKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQY 477 A R ++ ++ Q L + +EQ D E D + +GRG Y Sbjct: 8676 AHWQR--------DNALLAAGQGLAAGLEQAARLDW--SPAIEVLRDCQRLMVIGRGAGY 8825 Query: 478 PIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEV 537 IA E ALK KE S I AEA+++ E++HGP+AL++ P++V AP E L + E++ Sbjct: 8826 AIAQEAALKFKETSAIQAEAFSSAEVRHGPMALVEERYPLLVFAPRGPEQEGLLALAEDM 9005 Query: 538 RARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVD 597 R RG Q+ + A D ++ ++ + H + PI ++A +A +G D D Sbjct: 9006 RQRGAQVLLAAPDD---IAERDLPLQRAAH--PALDPILAIQSFYVMAAGLAEARGMDPD 9170 Query: 598 QPRNLAK 604 QPR+L+K Sbjct: 9171 QPRHLSK 9191 >embl|AE004735|AE004735 Pseudomonas aeruginosa PAO1, section 296 of 529 of the complete genome. Length = 11976 Score = 53.9 bits (128), Expect = 7e-08 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 18/215 (8%) Frame = -3 Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60 MCGIVG + + +V + D+AG+ + R + G V+ + Q Sbjct: 3571 MCGIVGIVGKSNVNQALYDALTVLQHRGQDAAGIVTCHDDKLYLR-KDNGLVRDVFQQRH 3395 Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEH---IVVVHNGIIENHEPLREELKARGY 117 L G GI H R+ T G S A P I + HNG + N E L +E+ Sbjct: 3394 MQRLIGSVGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNVEQLAKEIYESDL 3215 Query: 118 TFV-SETDTEVIAHLVNWELKQGGTLR---EAVLRAIPQLR----GAYGTVIMDSRHPDT 169 V + +D+EV+ ++ EL L+ E + A+ + G Y V M + H Sbjct: 3214 RHVNTNSDSEVLLNVFAHELAVRNKLQPTEEDIFAAVSCVHDRCVGGYAVVAMITGH--G 3041 Query: 170 LLAARSGS---PLVIGLGMGEN----FIASDQLAL 197 ++ R + P+V G EN IAS+ +AL Sbjct: 3040 IVGFRDPNAIRPIVFGQRHTENGVEYMIASESVAL 2936 >embl|AE004445|AE004445 Pseudomonas aeruginosa PAO1, section 6 of 529 of the complete genome. Length = 10261 Score = 40.0 bits (92), Expect = 0.001 Identities = 24/80 (30%), Positives = 38/80 (47%) Frame = +1 Query: 92 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIP 151 + + +V+ G + NH+ LRE L+ G+ F + +DTEV+ H L+ G R Sbjct: 1510 QEVTLVYTGEVYNHDALRERLRRAGHEFRTRSDTEVVLHAY---LQWGE-------RCCE 1659 Query: 152 QLRGAYGTVIMDSRHPDTLL 171 L G + + D R LL Sbjct: 1660 YLTGMFAFAVFDGRDGHLLL 1719 Database: pa Posted date: Sep 19, 2006 6:31 PM Number of letters in database: 6,296,083 Number of sequences in database: 529 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,318,632 Number of Sequences: 529 Number of extensions: 69606 Number of successful extensions: 497 Number of sequences better than 1.0e-02: 4 Number of HSP's better than 0.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 48 Number of HSP's that attempted gapping in prelim test: 390 Number of HSP's gapped (non-prelim): 190 length of query: 609 length of database: 2,098,694 effective HSP length: 95 effective length of query: 514 effective length of database: 2,048,439 effective search space: 1052897646 effective search space used: 1052897646 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 84 (37.0 bits)