TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= GLMS, glutamine amidotransferase (609 letters) Database: pm 204 sequences; 2,269,587 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value embl|AE006210|AE006210 Pasteurella multocida subsp. multocida st... 826 0.0 embl|AE006107|AE006107 Pasteurella multocida subsp. multocida st... 70 3e-13 embl|AE006195|AE006195 Pasteurella multocida subsp. multocida st... 38 0.001 embl|AE006037|AE006037 Pasteurella multocida subsp. multocida st... 37 0.002 >embl|AE006210|AE006210 Pasteurella multocida subsp. multocida str. Pm70 section 177 of 204 of the complete genome. Length = 13962 Score = 826 bits (2134), Expect = 0.0 Identities = 419/610 (68%), Positives = 498/610 (81%), Gaps = 1/610 (0%) Frame = -1 Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60 MCGIVGAIAQRDVAEI DSAG+A+VD E + R+R LGKVQ+LA+A Sbjct: 6393 MCGIVGAIAQRDVAEILVNGLHRLEYRGYDSAGIAIVDQEKRLQRVRCLGKVQVLAEAVA 6214 Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV 120 + GGTGIAHTRWATHG PSE NAHPHVS VVHNGIIEN+E LR +L+ +GY F+ Sbjct: 6213 AEKITGGTGIAHTRWATHGAPSEDNAHPHVSGQFAVVHNGIIENYEQLRIDLQQKGYQFL 6034 Query: 121 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV 180 S+TDTEVIAHLV+W ++ +L AV + + QL+GAYG V+MD P+ L+AARSGSPLV Sbjct: 6033 SQTDTEVIAHLVHWVMRNETSLLRAVQQVVKQLKGAYGMVVMDCEQPNHLVAARSGSPLV 5854 Query: 181 IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ 240 IGLG+GENF+ASDQLALL VTRRFIFLEEGD+AEITRR+V+I+D G V+R +S+L Sbjct: 5853 IGLGIGENFLASDQLALLNVTRRFIFLEEGDVAEITRRTVDIYDVNGHPVQRDSQDSHLT 5674 Query: 241 YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA 300 +DA +KG +RH+MQKEI+EQP AI NTL GR+ V + +G A+ LL +VEHIQI+A Sbjct: 5673 HDATEKGTFRHFMQKEIFEQPRAILNTLEGRLHQHNVLVDSIGNGAERLLEQVEHIQIVA 5494 Query: 301 CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL 360 CGTSYN+GMV+RYWFE LAGI CDVEIASEFRYRK R SL+ITLSQSGETADTLA L Sbjct: 5493 CGTSYNAGMVARYWFEHLAGISCDVEIASEFRYRKFVTRPKSLLITLSQSGETADTLAAL 5314 Query: 361 RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL 420 RL+KE GY+G++ ICNV GSSLVRESDLA MT AG EIGVASTKAFTTQL LLMLV + Sbjct: 5313 RLAKEKGYMGAMTICNVAGSSLVRESDLAFMTRAGVEIGVASTKAFTTQLATLLMLVIAI 5134 Query: 421 SRLKG-LDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPI 479 ++ G + S E ++V LQ+LP+ IE+ L+ +++IE+LA+DF+DKHHALFLGRG+ YPI Sbjct: 5133 GKVTGNISLSQEEELVKALQSLPAEIEKALAFNQQIESLAQDFADKHHALFLGRGEYYPI 4954 Query: 480 ALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRA 539 A+EGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAP N+LLEK+KSNIEEVR+ Sbjct: 4953 AMEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPTNDLLEKVKSNIEEVRS 4774 Query: 540 RGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQP 599 RGGQLYVFAD++AGF ++ M I+ MP V EVIAPIFYT+P+QLLAYHVALIKGTDVDQP Sbjct: 4773 RGGQLYVFADKEAGFTETEGMKIMTMPKVNEVIAPIFYTIPMQLLAYHVALIKGTDVDQP 4594 Query: 600 RNLAKSVTVE 609 RNLAK+VTVE Sbjct: 4593 RNLAKAVTVE 4564 >embl|AE006107|AE006107 Pasteurella multocida subsp. multocida str. Pm70 section 74 of 204 of the complete genome. Length = 12832 Score = 70.5 bits (171), Expect = 3e-13 Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 16/221 (7%) Frame = -3 Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60 MCGIVG ++Q V + D+AG+ VD E + G V + + Sbjct: 1625 MCGIVGIVSQSPVNQSIYDALTLLQHRGQDAAGIVTVDDENRFRLRKANGLVSDVFEQVH 1446 Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEH---IVVVHNGIIENHEPLREELKARGY 117 L G GI H R+ T G S A P + +VHNG + N L+E+L R Sbjct: 1445 MLRLQGNAGIGHVRYPTAGSSSVSEAQPFYVNSPYGLTLVHNGNLTNSSELKEKLFRRAR 1266 Query: 118 TFV-SETDTEVIA-----HLVNWELKQ--GGTLREAVLRAIPQLRGAYGTVIMDSRHPDT 169 V + +D+E++ HL ++E Q + AV + +RGAY + M H Sbjct: 1265 RHVNTNSDSELLLNILANHLDHFEKYQLDPQDVFSAVKQTHQDIRGAYACIAMIIGHGMV 1086 Query: 170 LLAARSG-SPLVIGL----GMGENFIASDQLALLPVTRRFI 205 +G PLV+G G E AS+ +AL V F+ Sbjct: 1085 AFRDPNGIRPLVLGKREENGKTEYMFASESIALDTVGFEFV 963 >embl|AE006195|AE006195 Pasteurella multocida subsp. multocida str. Pm70 section 162 of 204 of the complete genome. Length = 10582 Score = 38.1 bits (87), Expect = 0.001 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = -2 Query: 324 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLV 383 D A E R A+ +++ ++ SG T LAG+ + +G + CN P S+L Sbjct: 2121 DDRSAGEQDLRNLALNEKDVVVGIAASGRTPYVLAGIEYANHVGCVTVGISCN-PDSALA 1945 Query: 384 RESDLALMTNAGTEI--GVASTKAFTTQLTVLLML 416 +++A+ G E+ G + KA T Q +L ML Sbjct: 1944 ALANIAITPIVGPEVITGSSRMKAGTAQKLILNML 1840 >embl|AE006037|AE006037 Pasteurella multocida subsp. multocida str. Pm70 section 4 of 204 of the complete genome. Length = 11462 Score = 37.4 bits (85), Expect = 0.002 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Frame = -1 Query: 30 DSAGLAVVDAEG-HMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHP 88 D G+A + +G + R + +A +++ + IAH R AT GE + N HP Sbjct: 7841 DGFGIAFFEGKGIRVFRDNQAAHSSPIADCVKQYHIKSLNVIAHIRKATQGEVNIENTHP 7662 Query: 89 HVSE----HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELK 137 + E + V HNG + + L L Y + TD+E + ELK Sbjct: 7661 FIRELWGQNWVFAHNGNLTVYPDLTHSL----YQPIGSTDSEAAFCYMMSELK 7515 Database: pm Posted date: Sep 19, 2006 6:32 PM Number of letters in database: 2,269,587 Number of sequences in database: 204 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,225,209 Number of Sequences: 204 Number of extensions: 15687 Number of successful extensions: 72 Number of sequences better than 1.0e-02: 4 Number of HSP's better than 0.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 20 length of query: 609 length of database: 756,529 effective HSP length: 87 effective length of query: 522 effective length of database: 738,781 effective search space: 385643682 effective search space used: 385643682 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)