TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= GLMS, glutamine amidotransferase (609 letters) Database: vc 344 sequences; 4,053,984 total letters Searching.done Score E Sequences producing significant alignments: (bits) Value embl|AE004135|AE004135 Vibrio cholerae O1 biovar eltor str. N169... 847 0.0 embl|AE004182|AE004182 Vibrio cholerae O1 biovar eltor str. N169... 67 5e-12 embl|AE004180|AE004180 Vibrio cholerae O1 biovar eltor str. N169... 42 2e-04 embl|AE004322|AE004322 Vibrio cholerae O1 biovar eltor str. N169... 39 0.002 >embl|AE004135|AE004135 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 43 of 251 of the complete chromosome. Length = 12614 Score = 847 bits (2189), Expect = 0.0 Identities = 426/610 (69%), Positives = 496/610 (81%), Gaps = 1/610 (0%) Frame = +1 Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAE 60 MCGIVGA+AQRDVAEI DSAG+AVVD++ +TRLRRLGKVQ LA A E Sbjct: 3073 MCGIVGAVAQRDVAEILVQGLRRLEYRGYDSAGVAVVDSDKQLTRLRRLGKVQELADAVE 3252 Query: 61 EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFV 120 + GGTGIAHTRWATHGEPSE+NAHPH+S I VVHNGIIENHE LR L+ RGY F Sbjct: 3253 AAQVAGGTGIAHTRWATHGEPSEINAHPHISGDITVVHNGIIENHEMLRTMLQDRGYVFT 3432 Query: 121 SETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLV 180 S+TDTEVIAHLV WEL+ +L EAV + QL GAYGTV+MD P L+ ARSGSP+V Sbjct: 3433 SQTDTEVIAHLVEWELRSASSLLEAVQTTVKQLTGAYGTVVMDRNDPSRLVVARSGSPIV 3612 Query: 181 IGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQ 240 IG G+GENF+ASDQLALL VTRRF++LEEGD+AE+TRR V +FD G V+R+ ESNL+ Sbjct: 3613 IGFGIGENFLASDQLALLNVTRRFMYLEEGDVAEMTRRDVRVFDALGQPVQREISESNLE 3792 Query: 241 YDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILA 300 +DA DKG YRHYMQKEI+EQP A+ NT+ GRI+H V + +G +A E+L+KVEH+QI+A Sbjct: 3793 HDAADKGHYRHYMQKEIFEQPKALINTMEGRITHDCVVVESIGVHAAEILAKVEHVQIVA 3972 Query: 301 CGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGL 360 CGTSYN+GM +RYWFESLAG+ CDVEIASEFRYRK R NSL+ITLSQSGETADTLA L Sbjct: 3973 CGTSYNAGMTARYWFESLAGVSCDVEIASEFRYRKFVTRPNSLLITLSQSGETADTLAAL 4152 Query: 361 RLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL 420 RL+KE GY+ ++ ICNV GSSLVRESD A MT AGTEIGVASTKAFTTQL LLMLV L Sbjct: 4153 RLAKEKGYMAAMTICNVAGSSLVRESDFAFMTRAGTEIGVASTKAFTTQLVTLLMLVTAL 4332 Query: 421 SR-LKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPI 479 + + + +E +IVH L LP +IE LS +K+IE LAEDF+DKHH LFLGRG+ YPI Sbjct: 4333 GKQQQRIGRELEAEIVHALHQLPKQIETALSFEKQIETLAEDFADKHHTLFLGRGEYYPI 4512 Query: 480 ALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRA 539 A+E +LKLKEISYIHAEAYAAGELKHGPLALIDADMPV+VVAP+NELLEKLKSNIEEVRA Sbjct: 4513 AVEASLKLKEISYIHAEAYAAGELKHGPLALIDADMPVVVVAPSNELLEKLKSNIEEVRA 4692 Query: 540 RGGQLYVFADQDAGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQP 599 RGG LYVFAD+ AGF + + M II MPHV E++API+YT+P+QLL+YHVALIKGTDVDQP Sbjct: 4693 RGGLLYVFADEVAGFEADETMKIIAMPHVSEIVAPIYYTIPMQLLSYHVALIKGTDVDQP 4872 Query: 600 RNLAKSVTVE 609 RNLAK+VTVE Sbjct: 4873 RNLAKAVTVE 4902 >embl|AE004182|AE004182 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 90 of 251 of the complete chromosome. Length = 9978 Score = 67.0 bits (162), Expect = 5e-12 Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 16/221 (7%) Frame = +1 Query: 1 MCGIVGAIAQRDVAEIXXXXXXXXXXXXXDSAGLAVVDAEGHMTRLRRL-GKVQMLAQAA 59 MCGIVG + V + D+AG+ + E + RLR+ G V+ + +A Sbjct: 4480 MCGIVGIVGTTPVNQSIYDALTVLQHRGQDAAGICTI--ESNRFRLRKANGLVRDVFEAK 4653 Query: 60 EEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEH---IVVVHNGIIENHEPLREELKARG 116 L G GI H R+ T G S A P I + HNG + N +R++L + Sbjct: 4654 HMQRLQGNVGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNANQVRQKLFEKD 4833 Query: 117 YTFVSET-DTEVIAHLVNWELK--QGGTLREAVLRAIPQ----LRGAYGTVIMDSRHPDT 169 V+ T D+EV+ +++ E+ +G + V RAI +RGAY M H Sbjct: 4834 RRHVNTTSDSEVLLNVLAHEIDTVKGNVTADDVFRAISNVHRTIRGAYAVAAMIIGHGMI 5013 Query: 170 LLAARSG-SPLVIGL----GMGENFIASDQLALLPVTRRFI 205 G PL +G G E +AS+ +AL V F+ Sbjct: 5014 AFRDPHGIRPLCLGKREVNGQLEYMVASESVALDAVGFDFV 5136 >embl|AE004180|AE004180 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 88 of 251 of the complete chromosome. Length = 10377 Score = 41.6 bits (96), Expect = 2e-04 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%) Frame = -3 Query: 70 IAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIA 129 +AH R A G S +++ NG I NH+ +RE K + Y F +++D EVI Sbjct: 8383 LAHERLAIVGLNSGAQPLYSPDRKLILAVNGEIYNHKEIRERYKGQ-YEFQTDSDCEVIL 8207 Query: 130 HLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGEN- 188 L +G L E +L G + V+ D + L+ + + G E+ Sbjct: 8206 ALYR---DKGADLLE-------ELNGIFAFVLYDEEKDEYLIGRDHIGIIPLYQGHDEHG 8057 Query: 189 --FIASDQLALLPVTR 202 ++AS+ AL+PV + Sbjct: 8056 NFYVASEMKALVPVCK 8009 >embl|AE004322|AE004322 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 230 of 251 of the complete chromosome. Length = 11328 Score = 38.5 bits (88), Expect = 0.002 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 20/139 (14%) Frame = +3 Query: 338 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTE 397 + R +++ +S SGE+++ LA L + K L + +++ P S++ + +D+ L E Sbjct: 1845 IERGDIVLAISNSGESSEILALLPVLKRLS-IRVISMTGNPNSNMAKLADIHLQITVPRE 2021 Query: 398 ---IGVASTKAFTTQLTVLLMLVAKLSRLKGL---DASIEH--------------DIVHG 437 + +A T + T L + L L + +G D ++ H DI+H Sbjct: 2022 ACPLELAPTSSTTATLVMGDALAVALMQARGFTAEDFALSHPGGALGRKLLLKLNDIMHS 2201 Query: 438 LQALPSRIEQMLSQDKRIE 456 ALP Q L +D +E Sbjct: 2202 GDALPKVAPQALIRDALLE 2258 Database: vc Posted date: Sep 19, 2006 6:33 PM Number of letters in database: 4,053,984 Number of sequences in database: 344 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,362,944 Number of Sequences: 344 Number of extensions: 32192 Number of successful extensions: 150 Number of sequences better than 1.0e-02: 4 Number of HSP's better than 0.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 121 Number of HSP's gapped (non-prelim): 42 length of query: 609 length of database: 1,351,328 effective HSP length: 92 effective length of query: 517 effective length of database: 1,319,680 effective search space: 682274560 effective search space used: 682274560 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 82 (36.2 bits)