BLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= X01631 X01631.1 E. coli origin of replication oriC and genes gid, unc, EcoURF-1 and glmS (1830 letters) Database: 3g 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE004135|AE004135 Vibrio cholerae O1 biovar eltor str. N169... 88 9e-17 embl|AE006210|AE006210 Pasteurella multocida subsp. multocida st... 88 9e-17 embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 ... 62 5e-09 embl|AE004776|AE004776 Pseudomonas aeruginosa PAO1, section 337 ... 42 0.005 >embl|AE004135|AE004135 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 43 of 251 of the complete chromosome. Length = 12614 Score = 87.7 bits (44), Expect = 9e-17 Identities = 131/160 (81%) Strand = Plus / Plus Query: 1460 tgaaagagatctcttacattcacgctgaagcctacgctgctggcgaactgaaacacggtc 1519 ||||||||||||||||||| ||||| |||||||| || || ||||| || || || || | Sbjct: 4535 tgaaagagatctcttacatccacgcagaagcctatgcagcgggcgagctaaagcatggcc 4594 Query: 1520 cgctggcgctaattgatgccgatatgccggttattgttgttgcaccgaacaacgaattgc 1579 | ||||| |||||||||| |||||||| || |||| |||||||| | ||| ||| || Sbjct: 4595 cattggcgttaattgatgcggatatgccagtggttgtggttgcaccaagcaatgaactgt 4654 Query: 1580 tggaaaaactgaaatccaacattgaagaagttcgcgcgcg 1619 | ||||| || |||||||| ||||||||||| || ||||| Sbjct: 4655 tagaaaagcttaaatccaatattgaagaagtgcgtgcgcg 4694 Score = 60.0 bits (30), Expect = 2e-08 Identities = 96/118 (81%) Strand = Plus / Plus Query: 889 cagatcctcgcctgtggtacttcttataactccggtatggtttcccgctactggtttgaa 948 |||||| ||||||| |||||||||||||| | || ||| | || |||||||||||| Sbjct: 3961 cagatcgtcgcctgcggtacttcttataatgcagggatgacggcacgttactggtttgaa 4020 Query: 949 tcgctagcaggtattccgtgcgacgtcgaaatcgcctctgaattccgctatcgcaaat 1006 ||| |||| ||| | || || ||||||||||| |||||||||||||||||||||| Sbjct: 4021 tcgttagcgggtgtgagctgtgatgtcgaaatcgcgtctgaattccgctatcgcaaat 4078 Score = 50.1 bits (25), Expect = 2e-05 Identities = 64/77 (83%) Strand = Plus / Plus Query: 1754 cttaccatgtcgcgctgatcaaaggcaccgacgttgaccagccgcgtaacctggcaaaat 1813 |||||||||| || | |||||||| ||||| ||||||||||| |||||||| || ||| Sbjct: 4829 cttaccatgtggctttaatcaaaggtaccgatgttgaccagcctcgtaaccttgctaaag 4888 Query: 1814 cggttacggttgagtaa 1830 |||| || || |||||| Sbjct: 4889 cggtaactgtcgagtaa 4905 Score = 46.1 bits (23), Expect = 3e-04 Identities = 32/35 (91%) Strand = Plus / Plus Query: 1123 tgtaacgttccgggttcttctctggtgcgcgaatc 1157 ||||||||| ||||||||||||| ||||| ||||| Sbjct: 4195 tgtaacgttgcgggttcttctctcgtgcgtgaatc 4229 Score = 46.1 bits (23), Expect = 3e-04 Identities = 38/43 (88%) Strand = Plus / Plus Query: 285 ggtggtgcataacggcatcatcgaaaaccatgaaccgctgcgt 327 |||||| || |||||||| ||||||||||||||| ||||||| Sbjct: 3357 ggtggtacacaacggcattatcgaaaaccatgaaatgctgcgt 3399 Score = 46.1 bits (23), Expect = 3e-04 Identities = 77/95 (81%) Strand = Plus / Plus Query: 1 atgtgtggaattgttggcgcgatcgcgcaacgtgatgtagcagaaatccttcttgaaggt 60 ||||||||||||||||| ||| | || ||||| ||||| || ||||| | | |||| Sbjct: 3073 atgtgtggaattgttggtgcggttgcacaacgcgatgttgctgaaattttagtacaaggc 3132 Query: 61 ttacgtcgtctggaataccgcggatatgactctgc 95 |||| ||||| ||||||||||| ||||||||||| Sbjct: 3133 ctacgccgtcttgaataccgcggctatgactctgc 3167 >embl|AE006210|AE006210 Pasteurella multocida subsp. multocida str. Pm70 section 177 of 204 of the complete genome. Length = 13962 Score = 87.7 bits (44), Expect = 9e-17 Identities = 104/124 (83%) Strand = Plus / Minus Query: 1442 tggaaggcgcattgaagttgaaagagatctcttacattcacgctgaagcctacgctgctg 1501 |||||||||| |||||||| ||||| |||||||| ||||| || |||||||| || || | Sbjct: 4949 tggaaggcgcgttgaagttaaaagaaatctcttatattcatgcagaagcctatgccgcgg 4890 Query: 1502 gcgaactgaaacacggtccgctggcgctaattgatgccgatatgccggttattgttgttg 1561 | || || ||||| ||||| || ||| |||||||||| ||||||||||| ||||| || | Sbjct: 4889 gtgagctaaaacatggtccacttgcgttaattgatgcggatatgccggtgattgtggtcg 4830 Query: 1562 cacc 1565 |||| Sbjct: 4829 cacc 4826 Score = 54.0 bits (27), Expect = 1e-06 Identities = 42/47 (89%) Strand = Plus / Minus Query: 1 atgtgtggaattgttggcgcgatcgcgcaacgtgatgtagcagaaat 47 |||||||| |||||||| || || || |||||||||||||||||||| Sbjct: 6393 atgtgtggtattgttggtgcaattgcacaacgtgatgtagcagaaat 6347 >embl|AE004967|AE004967 Pseudomonas aeruginosa PAO1, section 528 of 529 of the complete genome. Length = 16662 Score = 61.9 bits (31), Expect = 5e-09 Identities = 64/75 (85%) Strand = Plus / Minus Query: 1756 taccatgtcgcgctgatcaaaggcaccgacgttgaccagccgcgtaacctggcaaaatcg 1815 ||||||||||| || |||| ||||||||||| ||||||||||| |||||||| || ||| Sbjct: 4928 taccatgtcgccgtgctcaagggcaccgacgtcgaccagccgcgcaacctggccaagtcg 4869 Query: 1816 gttacggttgagtaa 1830 || || || |||||| Sbjct: 4868 gtcaccgtcgagtaa 4854 Score = 50.1 bits (25), Expect = 2e-05 Identities = 40/45 (88%) Strand = Plus / Minus Query: 285 ggtggtgcataacggcatcatcgaaaaccatgaaccgctgcgtga 329 ||||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 6402 ggtggtgcacaacggcatcatcgagaaccacgaacctctccgtga 6358 Score = 48.1 bits (24), Expect = 8e-05 Identities = 51/60 (85%) Strand = Plus / Minus Query: 532 ccgctggtgattggcctggggatgggcgaaaactttatcgcttctgaccagctggcgctg 591 ||||||||||| ||||| ||| | ||||| ||||| ||||||| ||||| ||||||||| Sbjct: 6155 ccgctggtgatcggcctcgggcttggcgagaacttcctcgcttccgaccaactggcgctg 6096 >embl|AE004776|AE004776 Pseudomonas aeruginosa PAO1, section 337 of 529 of the complete genome. Length = 11673 Score = 42.1 bits (21), Expect = 0.005 Identities = 21/21 (100%) Strand = Plus / Plus Query: 578 accagctggcgctgttgccgg 598 ||||||||||||||||||||| Sbjct: 9337 accagctggcgctgttgccgg 9357 Database: 3g Posted date: Sep 19, 2006 6:49 PM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,775 Number of Sequences: 1077 Number of extensions: 16775 Number of successful extensions: 53 Number of sequences better than 1.0e-02: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 21 length of query: 1830 length of database: 12,619,654 effective HSP length: 17 effective length of query: 1813 effective length of database: 12,601,345 effective search space: 22846238485 effective search space used: 22846238485 T: 0 A: 0 X1: 11 (21.8 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)