script dna.def

background white
set fontsize 8
set fontstroke 0
color label black
restrict none
zoom 420
center atomno=12402

select nucleic and (9-11, 20-22)
wireframe 30
color cpk

select :A and (33, 35, 36, 38, 58, 70)
wireframe 60
color cpk

select selected and (*.NH?, *.NE, *.OE?, ((mse, ala) and *.O), ((asp, gly) and *.N), phe.CZ)
cpk 120
label %n%r (%a)

select nucleic and within (3.5, selected) and base and not(carbon) and not(20, 23, *.O4)
cpk 100
label %n%r (%a)

select :A and 36 and (*.CG, *.CD?, *.CE?, *.CZ)
wireframe 100

select T22 and (*.C?, *.N?)
wireframe 80

select atomno=13185
cpk 200
color red
label %n %r

bond 316 12402 +
bond 316 12745 +
bond 268 12380 +
bond 277 12381 +
bond 315 13185 +
bond 478 13185 +
bond 481 13185 +
bond 480 12418 +
bond 481 12418 +
bond 550 12744 +

bond 12378 12747 +
bond 12380 12747 +

echo The region of interaction between DNA bases and MutS is shown