BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_1 [107 - 403] 
         (99 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.326    0.133    0.564 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,641
Number of Sequences: 4855
Number of extensions: 3967
Number of successful extensions: 7
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 0
length of query: 99
length of database: 1,534,022
effective HSP length: 67
effective length of query: 32
effective length of database: 1,208,737
effective search space: 38679584
effective search space used: 38679584
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_2 [1 - 591] 
         (197 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PPNK_ECOLI P0A7B3 Probable inorganic polyphosphate/ATP-NAD kinas...   302   1e-83

>PPNK_ECOLI P0A7B3 Probable inorganic polyphosphate/ATP-NAD kinase
           (EC 2.7.1.23) (Poly(P)/ATP NAD kinase).
          Length = 292

 Score =  302 bits (773), Expect = 1e-83
 Identities = 153/182 (84%), Positives = 161/182 (88%), Gaps = 4/182 (2%)

Query: 1   MFWPWVCSKGYKVLFEQQIAHDLQFSNVKPGPLAEIGQQADLPVVVGGDANMFGAARTLA 60
           M + W+C+KGY+V+ EQQIAH+LQ  NVK G LAEIGQ ADL VVVGGD NM GAARTLA
Sbjct: 25  MLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLA 84

Query: 61  RYDINVIGINRGTLGFFTDLDPDNALQQLADVLEGHYIAEKRFLLEAQVCQQDCQKRIST 120
           RYDI VIGINRG LGF TDLDPDNA QQLADVLEGHYI+EKRFLLEAQVCQQDCQKRIST
Sbjct: 85  RYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRIST 144

Query: 121 AINEVVLHPGKVAHMIEFEVYIDEVFAFSQRSDGLIISTPTGSTAYSLSAGGQSLRRRWT 180
           AINEVVLHPGKVAHMIEFEVYIDE+FAFSQRSDGLIISTPTGSTAYSLSAGG  L    T
Sbjct: 145 AINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPIL----T 200

Query: 181 PS 182
           PS
Sbjct: 201 PS 202


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.323    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,908
Number of Sequences: 4855
Number of extensions: 23808
Number of successful extensions: 74
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 1
length of query: 197
length of database: 1,534,022
effective HSP length: 80
effective length of query: 117
effective length of database: 1,145,622
effective search space: 134037774
effective search space used: 134037774
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 84 (37.0 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_3 [453 - 731] 
         (93 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PPNK_ECOLI P0A7B3 Probable inorganic polyphosphate/ATP-NAD kinas...    60   4e-11

>PPNK_ECOLI P0A7B3 Probable inorganic polyphosphate/ATP-NAD kinase
           (EC 2.7.1.23) (Poly(P)/ATP NAD kinase).
          Length = 292

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 28/31 (90%), Positives = 29/31 (93%)

Query: 22  PILTPSLDAITLVPMFPHTLSARPLVINGDT 52
           PILTPSLDAITLVPMFPHTLSARPLVIN  +
Sbjct: 197 PILTPSLDAITLVPMFPHTLSARPLVINSSS 227


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.328    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,628
Number of Sequences: 4855
Number of extensions: 6657
Number of successful extensions: 15
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 1
length of query: 93
length of database: 1,534,022
effective HSP length: 62
effective length of query: 31
effective length of database: 1,233,012
effective search space: 38223372
effective search space used: 38223372
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_4 [497 - 802] 
         (102 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PPNK_ECOLI P0A7B3 Probable inorganic polyphosphate/ATP-NAD kinas...   132   5e-33

>PPNK_ECOLI P0A7B3 Probable inorganic polyphosphate/ATP-NAD kinase
           (EC 2.7.1.23) (Poly(P)/ATP NAD kinase).
          Length = 292

 Score =  132 bits (332), Expect = 5e-33
 Identities = 62/65 (95%), Positives = 64/65 (98%)

Query: 38  TIRLRFSHRCSDLEISCDSQIALPIQDGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGW 97
           TIRLRFSHR +DLEISCDSQIALPIQ+GEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGW
Sbjct: 228 TIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGW 287

Query: 98  SKKLF 102
           SKKLF
Sbjct: 288 SKKLF 292


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.325    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,472
Number of Sequences: 4855
Number of extensions: 11013
Number of successful extensions: 26
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 1
length of query: 102
length of database: 1,534,022
effective HSP length: 70
effective length of query: 32
effective length of database: 1,194,172
effective search space: 38213504
effective search space used: 38213504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_5 [1520 - 1840] 
         (107 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.330    0.134    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,609
Number of Sequences: 4855
Number of extensions: 4688
Number of successful extensions: 10
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 0
length of query: 107
length of database: 1,534,022
effective HSP length: 72
effective length of query: 35
effective length of database: 1,184,462
effective search space: 41456170
effective search space used: 41456170
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_6 [766 - 2547] 
         (594 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RECN_ECOLI P05824 DNA repair protein recN (Recombination protein...   911   0.0  
SBCC_ECOLI P13458 Exonuclease sbcC.                                    47   4e-06

>RECN_ECOLI P05824 DNA repair protein recN (Recombination protein
           N).
          Length = 553

 Score =  911 bits (2354), Expect = 0.0
 Identities = 468/553 (84%), Positives = 498/553 (90%), Gaps = 1/553 (0%)

Query: 43  MLAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEADMVRRGAT 102
           MLAQLTISNFAIVRELEIDFHSGMT ITGETGAGKSIAIDALGLCLGGRAEADMVR GA 
Sbjct: 1   MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAA 60

Query: 103 RADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGFINGTAVPLSQLREL 162
           RADLCARF+LKDTPAA RWLEENQLE G ECLLRRVIS+DGRSRGFINGTAVPLSQLREL
Sbjct: 61  RADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLREL 120

Query: 163 GQLLIQIHGQHAHQLLTKPEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCRELAQHQQQS 222
           GQLLIQIHGQHAHQLLTKPEHQK LLDGY  E +L Q M   Y+ WHQSCR+LA HQQ S
Sbjct: 121 GQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHHQQLS 180

Query: 223 QERAARADLLQYQLKELNEFNPLPGEFEQIDEEYKRLANSGQLLSTCQHALTVLADGEEA 282
           QERAARA+LLQYQLKELNEFNP PGEFEQIDEEYKRLANSGQLL+T Q+AL ++ADGE+A
Sbjct: 181 QERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA 240

Query: 283 NLQSQLYTAKQLVSELVGMDSKLSGVLDMLEEAAIQLSEASDELRHYHDRLDLDPNRLFE 342
           NLQSQLYTAKQLVSEL+GMDSKLSGVLDMLEEA IQ++EASDELRHY DRLDLDPNRLFE
Sbjct: 241 NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFE 300

Query: 343 LEQRISRQIALARKHQVMPEELPAVYQAMLEEQRLLDDSAGSLESLSQQVVEHHQLALET 402
           LEQRIS+QI+LARKH V PE LP  YQ++LEEQ+ LDD A S E+L+  V +HHQ ALE 
Sbjct: 301 LEQRISKQISLARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALEI 360

Query: 403 ARQLHALRQASADELTQLITESMHSLSMPHGVFAIEVAFDERHLTAD-ADHIEFRVTTNP 461
           AR LH  RQ  A+EL QLIT+SMH+LSMPHG F I+V FDE HL AD AD IEFRVTTNP
Sbjct: 361 ARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFDEHHLGADGADRIEFRVTTNP 420

Query: 462 GQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL 521
           GQP+QPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
Sbjct: 421 GQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL 480

Query: 522 GESTQVMCVTHLPQVACCGHHHFFVCKETDGEMTETHMQPLDKRARLQELARLLGGSEVT 581
           GESTQVMCVTHLPQVA CGH H+FV KETDG MTETHMQ L+K+ARLQELARLLGGSEVT
Sbjct: 481 GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVT 540

Query: 582 RNTLANAKELLAA 594
           RNTLANAKELLAA
Sbjct: 541 RNTLANAKELLAA 553


>SBCC_ECOLI P13458 Exonuclease sbcC.
          Length = 1048

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 48/318 (15%)

Query: 57  ELEIDF------HSGMTAITGETGAGKSIAIDALGLCL---------GGRAEADMVRRGA 101
           E +IDF       +G+ AITG TGAGK+  +DA+ L L           +++ D++ R  
Sbjct: 17  EWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDT 76

Query: 102 TRADLCARFALKDTPAAQRW------------LEENQLESGRECLLRRVISADGRSRGFI 149
                   F +K       W            L+  ++E  R C   ++++   + +  +
Sbjct: 77  AECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELAR-CADGKILADKVKDKLEL 135

Query: 150 NGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKTLLDGYTGEYALTQRMAEHYRQWH 209
             T   L   R    +L+   GQ A  L  KP+ +  LL+  TG     Q  A  + Q H
Sbjct: 136 TATLTGLDYGRFTRSMLLS-QGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQ-H 193

Query: 210 QSCRELAQHQQQSQERAARADLLQYQLKELNEFNPLPGEFEQIDEEYKRLANSGQLLSTC 269
           +S R      ++ Q +A+   LL  +     +   L    + + +E K+L  + Q     
Sbjct: 194 KSAR---TELEKLQAQASGVTLLTPE-----QVQSLTASLQVLTDEEKQLITAQQQEQQS 245

Query: 270 QHALTVLADGEEANLQSQLYTAKQLVSELVGMDSKLSGVLDMLEEAAIQLSEASDELRHY 329
            + LT      +  LQ +    +Q + + +  + K    L     AA+ L++ +  LR +
Sbjct: 246 LNWLT-----RQDELQQEASRRQQALQQALAEEEKAQPQL-----AALSLAQPARNLRPH 295

Query: 330 HDRLDLDPNRLFELEQRI 347
            +R+      L  + Q+I
Sbjct: 296 WERIAEHSAALAHIRQQI 313


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,655,352
Number of Sequences: 4855
Number of extensions: 67962
Number of successful extensions: 280
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 6
length of query: 594
length of database: 1,534,022
effective HSP length: 90
effective length of query: 504
effective length of database: 1,097,072
effective search space: 552924288
effective search space used: 552924288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_7 [2438 - 2713] 
         (92 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.326    0.133    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 271,202
Number of Sequences: 4855
Number of extensions: 8297
Number of successful extensions: 26
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 0
length of query: 92
length of database: 1,534,022
effective HSP length: 61
effective length of query: 31
effective length of database: 1,237,867
effective search space: 38373877
effective search space used: 38373877
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_8 [2692 - 3036] 
         (115 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMPA_ECOLI P0A937 Small protein A precursor.                          185   8e-49

>SMPA_ECOLI P0A937 Small protein A precursor.
          Length = 113

 Score =  185 bits (469), Expect = 8e-49
 Identities = 87/111 (78%), Positives = 93/111 (83%)

Query: 3   MRCKXXXXXXXXXXXXXXGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALG 62
           MRCK              GCSTLERVVYRPDINQGNYL  NDV+KIRVGMTQQQVAYALG
Sbjct: 1   MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALG 60

Query: 63  TPMMTDPFGTNTWFYVFRQEPGHQKVTQQTLTLTFNSGGVLTNIDNKPALT 113
           TP+M+DPFGTNTWFYVFRQ+PGH+ VTQQTLTLTFNS GVLTNIDNKPAL+
Sbjct: 61  TPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALS 111


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,759
Number of Sequences: 4855
Number of extensions: 11186
Number of successful extensions: 17
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 1
length of query: 115
length of database: 1,534,022
effective HSP length: 73
effective length of query: 42
effective length of database: 1,179,607
effective search space: 49543494
effective search space used: 49543494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_9 [3065 - 3418] 
         (118 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.329    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,753
Number of Sequences: 4855
Number of extensions: 15118
Number of successful extensions: 23
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 0
length of query: 118
length of database: 1,534,022
effective HSP length: 73
effective length of query: 45
effective length of database: 1,179,607
effective search space: 53082315
effective search space used: 53082315
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 81 (35.8 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_10 [3406 - 3741] 
         (112 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.316    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,448
Number of Sequences: 4855
Number of extensions: 5936
Number of successful extensions: 9
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 0
length of query: 112
length of database: 1,534,022
effective HSP length: 72
effective length of query: 40
effective length of database: 1,184,462
effective search space: 47378480
effective search space used: 47378480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_11 [3381 - 3836] 
         (152 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.327    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,790
Number of Sequences: 4855
Number of extensions: 17294
Number of successful extensions: 45
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 0
length of query: 152
length of database: 1,534,022
effective HSP length: 77
effective length of query: 75
effective length of database: 1,160,187
effective search space: 87014025
effective search space used: 87014025
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 83 (36.6 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_12 [3968 - 4450] 
         (161 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSRP_ECOLI P0A832 SsrA-binding protein (Small protein B).             300   3e-83

>SSRP_ECOLI P0A832 SsrA-binding protein (Small protein B).
          Length = 159

 Score =  300 bits (769), Expect = 3e-83
 Identities = 143/159 (89%), Positives = 154/159 (96%)

Query: 3   TKKKAHKPGSATIALNKRARHEYFIEDEYEAGLALQGWEVKSLRAGKANIGDSYVILKDG 62
           TKKKAHKPGSATIALNKRARHEYFIE+E+EAGLALQGWEVKSLRAGKANI DSYV+L+DG
Sbjct: 1   TKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG 60

Query: 63  EAFLFGANFTPMAVASTHYVCDPTRTRKLLLNQRELDTLYGRINREGYTVVALSLYWKNA 122
           EAFLFGAN TPMAVASTH VCDPTRTRKLLLNQRELD+LYGR+NREGYTVVALSLYWKNA
Sbjct: 61  EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 120

Query: 123 WCKVKIGVAKGKKQHDKRTDLKDREWALDKARIMKHAGR 161
           WCKVKIGVAKGKKQHDKR+D+K+REW +DKARIMK+A R
Sbjct: 121 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 159


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,018
Number of Sequences: 4855
Number of extensions: 17322
Number of successful extensions: 39
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 1
length of query: 161
length of database: 1,534,022
effective HSP length: 78
effective length of query: 83
effective length of database: 1,155,332
effective search space: 95892556
effective search space used: 95892556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_13 [5344 - 5652] 
         (103 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.321    0.129    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,657
Number of Sequences: 4855
Number of extensions: 10278
Number of successful extensions: 27
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 0
length of query: 103
length of database: 1,534,022
effective HSP length: 71
effective length of query: 32
effective length of database: 1,189,317
effective search space: 38058144
effective search space used: 38058144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_14 [5840 - 6127] 
         (96 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.317    0.130    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,578
Number of Sequences: 4855
Number of extensions: 10566
Number of successful extensions: 14
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 0
length of query: 96
length of database: 1,534,022
effective HSP length: 65
effective length of query: 31
effective length of database: 1,218,447
effective search space: 37771857
effective search space used: 37771857
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_15 [5974 - 6282] 
         (103 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RND_ECOLI P09155 Ribonuclease D (EC 3.1.26.3) (RNase D).               35   8e-04

>RND_ECOLI P09155 Ribonuclease D (EC 3.1.26.3) (RNase D).
          Length = 375

 Score = 35.4 bits (80), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 15  WSPSAAIVRGCSPASANHWSICTSRPRTPRLFVWGSAVSWLPTV---CAVLPERREQVIS 71
           W       R C  A+A+ W +    P T +L V   A  WLP     C ++  RR++V++
Sbjct: 139 WLARPLTERQCEYAAADVWYLL---PITAKLMVETEASGWLPAALDECRLMQMRRQEVVA 195

Query: 72  PVKFW 76
           P   W
Sbjct: 196 PEDAW 200


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.327    0.134    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,085
Number of Sequences: 4855
Number of extensions: 10093
Number of successful extensions: 17
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 1
length of query: 103
length of database: 1,534,022
effective HSP length: 71
effective length of query: 32
effective length of database: 1,189,317
effective search space: 38058144
effective search space used: 38058144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_16 [5034 - 6371] 
         (446 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

INTA_ECOLI P32053 Prophage CP4-57 integrase.                          378   e-106
INTB_ECOLI P39347 Prophage P4 integrase (Int(P4)).                    184   9e-48
INTZ_ECOLI P76542 Putative prophage CPZ-55 integrase.                 165   6e-42
INTS_ECOLI P37326 Putative prophage CPS-53 integrase.                 165   6e-42
INTQ_ECOLI P76168 Putative lambdoid prophage Qin defective integ...    43   5e-05
INTF_ECOLI P71298 Putative prophage CP4-6 integrase.                   42   9e-05
RCI2_ECOLI P16470 Shufflon-specific DNA recombinase.                   40   5e-04
RCI1_ECOLI P10487 Shufflon-specific DNA recombinase.                   40   5e-04

>INTA_ECOLI P32053 Prophage CP4-57 integrase.
          Length = 413

 Score =  378 bits (970), Expect = e-106
 Identities = 194/398 (48%), Positives = 266/398 (66%), Gaps = 3/398 (0%)

Query: 32  MPKVLKSLTNTEIAAAKPQKTEYMLRDGDGLALLIKPSGRKIWYFEYAPPALKKRTKISI 91
           M +  K LT+TEI AAKP+  +Y L DGDGL LLIK SG K+W F Y  P  K+RTK S 
Sbjct: 1   MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60

Query: 92  GPYPVVTLAMARDFRLQYRRLLVQGIDPQAHLEQVAEEQRLQNECTLEKVAEQWLKEKKR 151
           G YP V+L+ AR  R + + LL + IDPQ H ++     +     T   VAE+W   KK 
Sbjct: 61  GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKK- 119

Query: 152 TSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTLLEEQGILETLRRVISRL 211
            + ++ED+A D+WRSLE  +FP++G+  +TEI+   L + +  ++ +G LET+RR+  R+
Sbjct: 120 -TSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178

Query: 212 NEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCL 271
           NE+  +A +  LI+  P+ N+   F+KP+K+NMP++ P +L +LM  ++ ASI   TRCL
Sbjct: 179 NEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCL 238

Query: 272 IEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPV 331
             W+LLT  RP EA  ARW +ID   +EW+IP   MKMNR HTVPLS  AL +L++M+P+
Sbjct: 239 FMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPL 298

Query: 332 SRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTA-GAGHFPREVLE 390
           S  R ++FPS  KP + M+ QT NAAL R G GG LV+HG+RSIA TA     FP +V+E
Sbjct: 299 SGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIE 358

Query: 391 SALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAA 428
           +ALAH  ++E+  AYNRSDYLEQRRP+MQWW + V AA
Sbjct: 359 AALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAA 396


>INTB_ECOLI P39347 Prophage P4 integrase (Int(P4)).
          Length = 396

 Score =  184 bits (468), Expect = 9e-48
 Identities = 120/385 (31%), Positives = 199/385 (51%), Gaps = 24/385 (6%)

Query: 64  LLIKPSGRKIWYFEYAPPALKKRTKISIGPYPVVTLAMARDFRLQYRRLLVQGIDPQAHL 123
           LL+ P+G K W  +Y      K+  +++G YP +TLA AR  R + R+LL  G+DP    
Sbjct: 3   LLVHPNGSKYWRLQYRYEG--KQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 60

Query: 124 EQVAEEQRLQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEI 183
           +    EQ      T ++VA +W    K+ S   EDHA  V +SLE ++F +LG   + E+
Sbjct: 61  KNDKVEQSKAR--TFKEVAIEWHGTNKKWS---EDHAHRVLKSLEDNLFAALGERNIAEL 115

Query: 184 RPKMLKEHLTLLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQN 243
           + + L   +  +E  G LE   R+  R   I R+A+   LI++NPA  +        +Q+
Sbjct: 116 KTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQH 175

Query: 244 MPALHPSELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIP 303
            PAL    +  L+  + + + R  TR  IE  LL ++R  E   ARW +ID + + W IP
Sbjct: 176 RPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIP 235

Query: 304 ------------DTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQ 351
                           KM  +H VPLS QAL +L+ ++        +F       + M +
Sbjct: 236 PEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSE 295

Query: 352 QTANAALIRMGFGG--ELVAHGMRSIARTA--GAGHFPREVLESALAHQKEDEIEAAY-N 406
            T N+AL  MG+    E+  HG R++A ++   +G + R+ +E  ++H   + + AAY +
Sbjct: 296 NTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIH 355

Query: 407 RSDYLEQRRPLMQWWGNYVDAARRQ 431
           ++++LE+RR ++QWW +++D  R +
Sbjct: 356 KAEHLEERRLMLQWWADFLDVNRER 380


>INTZ_ECOLI P76542 Putative prophage CPZ-55 integrase.
          Length = 402

 Score =  165 bits (418), Expect = 6e-42
 Identities = 138/412 (33%), Positives = 202/412 (49%), Gaps = 28/412 (6%)

Query: 39  LTNTEIAAAKPQKTEYMLRDG--DGLALLIKPSGRKIWYFEYAPPALKKRTKI-SIGPYP 95
           LT   I AA+PQ   Y L D    GL LL+ P+G K W F Y    L KR  + +IG YP
Sbjct: 6   LTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYW---LNKREFLQAIGVYP 62

Query: 96  VVTLAMARDFRLQYRRLLVQGIDPQAHLEQVAEEQRLQNECTLEKVAEQWLKEKKRTSDL 155
           ++TL  AR    + R L+  GI+P     +      L      +KVAE W     R    
Sbjct: 63  LITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFAT--RVGGW 120

Query: 156 SEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTLLE--EQGILETLRRVISRLNE 213
           SE +AK V  +LE  V+P LG   + +I  +   + L LL+  E+   E  R++  R+ E
Sbjct: 121 SESYAKQVRSALEKDVYPVLGKRSIVDITAR---DVLALLQKKERTAPEQARKLRRRIGE 177

Query: 214 IFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNA-SIRKETRCLI 272
           IF+FA+  EL+  NP  +L    K  +  +   +  SE+     AL+ A S++ +T   I
Sbjct: 178 IFKFAVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERAGSVQIQTA--I 235

Query: 273 EWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVS 332
              +LT +R  E    RW  I+++ A   +P   MK  R H VPLS+QA+ +LQ     S
Sbjct: 236 RLLILTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRS 295

Query: 333 RHRPWVFPS--IRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTA--GAGHFPREV 388
            +  +VFP   + KPL          AL R+G+      HG R+   TA   +G +  + 
Sbjct: 296 GYSAFVFPGRFMDKPLS---ASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDW 352

Query: 389 LESALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALLGEEEPL 440
           +E  LAH  +  I   YN++ YL+QRR +MQ + + +D+     L G   PL
Sbjct: 353 IEIQLAHVPKG-IRGVYNQAAYLKQRRAMMQDYADAIDS----ILAGNGNPL 399


>INTS_ECOLI P37326 Putative prophage CPS-53 integrase.
          Length = 385

 Score =  165 bits (418), Expect = 6e-42
 Identities = 114/395 (28%), Positives = 192/395 (48%), Gaps = 22/395 (5%)

Query: 39  LTNTEIAAAKPQKTEYMLRDGDGLALLIKPSGRKIWYFEYAPPALKKRTKISIGPYPVVT 98
           LT  +I AAKP++  Y L DG+GL L +  SG+K+W   Y     +K   +++G YP++T
Sbjct: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59

Query: 99  LAMARDFRLQYRRLLVQGIDPQAHLEQVAEEQRLQNECTLEKVAEQWLKEKKRTSDLSED 158
           L  ARD     R+ +  GIDP      V  ++   N  +   + ++W + KK+    S  
Sbjct: 60  LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQV--WSVG 111

Query: 159 HAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTLLEEQGILETLRRVISRLNEIFRFA 218
           +A ++ +  +  + P +G   + +I P  L E +   E++G +E   +   R  E+FR+A
Sbjct: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171

Query: 219 ISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELL- 277
           I     ++NPA +L    K  +K+N P L   ++     AL  A+       LI  ++L 
Sbjct: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIVSLIATKVLR 229

Query: 278 -TWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVL----QIMEPVS 332
            T +R  E  S  W ++D +     I  + MK  + H VP+S Q + +L     I +PVS
Sbjct: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289

Query: 333 RHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLES 391
               +VF       + + +      + ++G+ G    HG R    T    H +P + +E 
Sbjct: 290 E---FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEV 346

Query: 392 ALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVD 426
            LAH     +   YN + YL++RR +MQWW +++D
Sbjct: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381


>INTQ_ECOLI P76168 Putative lambdoid prophage Qin defective
           integrase (Fragment).
          Length = 385

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 30/225 (13%)

Query: 122 HLEQVAEEQRLQNECTLEKVAEQWLKEKK-RTSDLSEDHAKDVWRSL-----EMHVFPSL 175
           +LE+  E ++   + T++++AE++L  K+   +  S +  + V +++     E ++  S+
Sbjct: 27  NLEKFGEARQ---DLTIKELAEKFLALKETEVAKTSLNTYRAVIKNILSIIGEKNLASSI 83

Query: 176 GNTPVTEIRPKML------KEHLTLLEEQGILETLRRVISRLNEIFRFAISEELIEFNPA 229
               + E+R ++L      K +  + +      T+   ++ LN +F+F +    +  NP 
Sbjct: 84  NKEKLLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPF 143

Query: 230 DNLVARFKKPKKQNMPALHP---SELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAV 286
             +      P K++     P    E  RL+ A +N    K   C+    + T VRPGE  
Sbjct: 144 KGI-----SPLKESRTIPDPLSREEFIRLIDACRNQQA-KNLWCV---SVYTGVRPGELC 194

Query: 287 SARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQAL-RVLQIMEP 330
           +  W DID+K     I     K     TVP ++    RV+ +++P
Sbjct: 195 ALGWEDIDLKNGTMMIRRNLAK--DRFTVPKTQAGTNRVIHLIKP 237


>INTF_ECOLI P71298 Putative prophage CP4-6 integrase.
          Length = 466

 Score = 42.0 bits (97), Expect = 9e-05
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 10/153 (6%)

Query: 276 LLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIM--EPVS- 332
           LLT  R  E  S RW D+D K +  RI D   K+     +PL+     +L ++   P S 
Sbjct: 301 LLTGARREEIASLRWSDVDFKWSSMRIKD---KIEGERIIPLTPYVSELLNVLAQSPNSD 357

Query: 333 -RHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGM-RSIARTAGAGHFPREVLE 390
                WVF S  K  + +  ++A+   + +     +  HG+ RS    A     P  ++ 
Sbjct: 358 VNKEGWVFRSNSKSGKIIEPRSAHNRALVLAELPHISLHGLRRSFGTLAEWVEVPTGIVA 417

Query: 391 SALAHQKEDEIEAAYNRS--DYLEQRRPLMQWW 421
             + H+     E  Y R   D L +    ++ W
Sbjct: 418 QIMGHKPSALAEKHYRRRPLDLLRKWHEKIETW 450


>RCI2_ECOLI P16470 Shufflon-specific DNA recombinase.
          Length = 384

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 276 LLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRH 334
           L T +R GE ++ RW  ID++     +P+T  K   S  VPLS++A   LQ+M PV+ H
Sbjct: 150 LETAMRQGEILALRWEHIDLRHGVAHLPET--KNGHSRDVPLSRRARNFLQMM-PVNLH 205


>RCI1_ECOLI P10487 Shufflon-specific DNA recombinase.
          Length = 384

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 276 LLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRH 334
           L T +R GE ++ RW  ID++     +P+T  K   S  VPLS++A   LQ+M PV+ H
Sbjct: 150 LETAMRQGEILALRWEHIDLRHGVAHLPET--KNGHSRDVPLSRRARNFLQMM-PVNLH 205


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.321    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,300,025
Number of Sequences: 4855
Number of extensions: 51116
Number of successful extensions: 157
Number of sequences better than 1.0e-03: 8
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 8
length of query: 446
length of database: 1,534,022
effective HSP length: 88
effective length of query: 358
effective length of database: 1,106,782
effective search space: 396227956
effective search space used: 396227956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_17 [6398 - 6646] 
         (83 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.326    0.135    0.485 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,087
Number of Sequences: 4855
Number of extensions: 8588
Number of successful extensions: 12
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 0
length of query: 83
length of database: 1,534,022
effective HSP length: 53
effective length of query: 30
effective length of database: 1,276,707
effective search space: 38301210
effective search space used: 38301210
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_18 [6307 - 7017] 
         (237 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,444
Number of Sequences: 4855
Number of extensions: 22571
Number of successful extensions: 38
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 0
length of query: 237
length of database: 1,534,022
effective HSP length: 82
effective length of query: 155
effective length of database: 1,135,912
effective search space: 176066360
effective search space used: 176066360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 86 (37.7 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_19 [7177 - 9999] 
         (941 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.319    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,758,481
Number of Sequences: 4855
Number of extensions: 117012
Number of successful extensions: 322
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 0
length of query: 941
length of database: 1,534,022
effective HSP length: 94
effective length of query: 847
effective length of database: 1,077,652
effective search space: 912771244
effective search space used: 912771244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 92 (40.0 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_20 [7063 - 6764] (REVERSE SENSE) 
         (100 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.318    0.126    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,225
Number of Sequences: 4855
Number of extensions: 9162
Number of successful extensions: 29
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 0
length of query: 100
length of database: 1,534,022
effective HSP length: 68
effective length of query: 32
effective length of database: 1,203,882
effective search space: 38524224
effective search space used: 38524224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_21 [6516 - 6109] (REVERSE SENSE) 
         (136 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.328    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,060
Number of Sequences: 4855
Number of extensions: 16829
Number of successful extensions: 36
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 0
length of query: 136
length of database: 1,534,022
effective HSP length: 75
effective length of query: 61
effective length of database: 1,169,897
effective search space: 71363717
effective search space used: 71363717
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 82 (36.2 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_22 [6389 - 5862] (REVERSE SENSE) 
         (176 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.327    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,238
Number of Sequences: 4855
Number of extensions: 23100
Number of successful extensions: 46
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 0
length of query: 176
length of database: 1,534,022
effective HSP length: 79
effective length of query: 97
effective length of database: 1,150,477
effective search space: 111596269
effective search space used: 111596269
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 84 (37.0 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_23 [5764 - 5510] (REVERSE SENSE) 
         (85 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.322    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,782
Number of Sequences: 4855
Number of extensions: 2017
Number of successful extensions: 2
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 0
length of query: 85
length of database: 1,534,022
effective HSP length: 55
effective length of query: 30
effective length of database: 1,266,997
effective search space: 38009910
effective search space used: 38009910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_24 [4474 - 4004] (REVERSE SENSE) 
         (157 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.326    0.144    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,393
Number of Sequences: 4855
Number of extensions: 19358
Number of successful extensions: 48
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 0
length of query: 157
length of database: 1,534,022
effective HSP length: 77
effective length of query: 80
effective length of database: 1,160,187
effective search space: 92814960
effective search space used: 92814960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 83 (36.6 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_25 [3860 - 3387] (REVERSE SENSE) 
         (158 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YFJG_ECOLI P0AGL5 UPF0083 protein yfjG.                               266   4e-73

>YFJG_ECOLI P0AGL5 UPF0083 protein yfjG.
          Length = 158

 Score =  266 bits (681), Expect = 4e-73
 Identities = 135/157 (85%), Positives = 143/157 (91%)

Query: 1   MILFALCLNVEPAMPQISRTALVPFSAEQMYQLVNDVKSYPDFLPGCTGSRVLEFGPTQM 60
           MILF   L +E  MPQISRTALVP+SAEQMYQLVNDV+SYP FLPGCTGSR+LE  P QM
Sbjct: 1   MILFVGFLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQM 60

Query: 61  TAAVDVSKAGISKTFTTRNTLTSNQSILMSLVDGPFKKLIGGWKFIPLSPEACKIEFHLD 120
           TAAVDVSKAGISKTFTTRN LTSNQSILM+LVDGPFKKLIGGWKF PLS EAC+IEFHLD
Sbjct: 61  TAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLD 120

Query: 121 FEFTNKLIEMAFGRIFKELAANMVQAFTSRAKEVYSA 157
           FEFTNKLIE+AFGR+FKELAANMVQAFT RAKEVYSA
Sbjct: 121 FEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSA 157


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.322    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,978
Number of Sequences: 4855
Number of extensions: 14258
Number of successful extensions: 29
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 1
length of query: 158
length of database: 1,534,022
effective HSP length: 77
effective length of query: 81
effective length of database: 1,160,187
effective search space: 93975147
effective search space used: 93975147
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 83 (36.6 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_26 [3478 - 3218] (REVERSE SENSE) 
         (87 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YFJF_ECOLI P52119 UPF0125 protein yfjF.                                59   9e-11

>YFJF_ECOLI P52119 UPF0125 protein yfjF.
          Length = 96

 Score = 58.5 bits (140), Expect = 9e-11
 Identities = 29/37 (78%), Positives = 32/37 (86%)

Query: 29 VPANIRVEVAYALPEKQYLQRVTLDEGATVEQAIIAA 65
          +P  I VEVAYALPEKQYLQRVTL EGATVE+AI A+
Sbjct: 1  MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRAS 37


  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.326    0.132    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,429
Number of Sequences: 4855
Number of extensions: 8721
Number of successful extensions: 27
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 1
length of query: 87
length of database: 1,534,022
effective HSP length: 57
effective length of query: 30
effective length of database: 1,257,287
effective search space: 37718610
effective search space used: 37718610
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_27 [2964 - 2641] (REVERSE SENSE) 
         (108 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.328    0.137    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,917
Number of Sequences: 4855
Number of extensions: 10027
Number of successful extensions: 24
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 0
length of query: 108
length of database: 1,534,022
effective HSP length: 72
effective length of query: 36
effective length of database: 1,184,462
effective search space: 42640632
effective search space used: 42640632
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_28 [2472 - 2047] (REVERSE SENSE) 
         (142 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.328    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,909
Number of Sequences: 4855
Number of extensions: 11202
Number of successful extensions: 30
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 0
length of query: 142
length of database: 1,534,022
effective HSP length: 76
effective length of query: 66
effective length of database: 1,165,042
effective search space: 76892772
effective search space used: 76892772
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 82 (36.2 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_29 [2043 - 1168] (REVERSE SENSE) 
         (292 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.332    0.143    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,179
Number of Sequences: 4855
Number of extensions: 16724
Number of successful extensions: 53
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 0
length of query: 292
length of database: 1,534,022
effective HSP length: 84
effective length of query: 208
effective length of database: 1,126,202
effective search space: 234250016
effective search space used: 234250016
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 87 (38.1 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_30 [1143 - 877] (REVERSE SENSE) 
         (89 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,221
Number of Sequences: 4855
Number of extensions: 5368
Number of successful extensions: 4
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 0
length of query: 89
length of database: 1,534,022
effective HSP length: 59
effective length of query: 30
effective length of database: 1,247,577
effective search space: 37427310
effective search space used: 37427310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_31 [763 - 470] (REVERSE SENSE) 
         (98 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,326
Number of Sequences: 4855
Number of extensions: 6268
Number of successful extensions: 8
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 0
length of query: 98
length of database: 1,534,022
effective HSP length: 67
effective length of query: 31
effective length of database: 1,208,737
effective search space: 37470847
effective search space used: 37470847
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)
BLASTP 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KPN2Jun2003_32 [519 - 1] (REVERSE SENSE) 
         (173 letters)

Database: ecp 
           4855 sequences; 1,534,022 total letters

Searching..........done

 ***** No hits found ******

  Database: ecp
    Posted date:  Oct 5, 2006  7:53 PM
  Number of letters in database: 1,534,022
  Number of sequences in database:  4855
  
Lambda     K      H
   0.326    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,770
Number of Sequences: 4855
Number of extensions: 17380
Number of successful extensions: 52
Number of sequences better than 1.0e-03: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 0
length of query: 173
length of database: 1,534,022
effective HSP length: 78
effective length of query: 95
effective length of database: 1,155,332
effective search space: 109756540
effective search space used: 109756540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 84 (37.0 bits)