########################################
# Program: needle
# Rundate: Fri Oct 06 2006 23:17:58
# Commandline: needle
#    [-asequence] ssrA_eco.txt
#    [-bsequence] ssrA_kpn.txt
#    [-outfile] ssrA.txt
#    -gapopen 10
#    -gapextend 10
# Align_format: srspair
# Report_file: ssrA.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: KPN2Jun2003
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 10.0
#
# Length: 674
# Identity:     354/674 (52.5%)
# Similarity:   354/674 (52.5%)
# Gaps:         312/674 (46.3%)
# Score: 1718.0
# 
#
#=======================================

U00096             0 --------------------------------------------------      0
                                                                       
KPN2Jun2003        1 tttcccctccccgagggccaactctcgctggcccttacgctatatccttg     50

U00096             0 --------------------------------------------------      0
                                                                       
KPN2Jun2003       51 ttgatgctgctttttcgtccatcctgctgaaataatcctgcgtgatgggg    100

U00096             1 --------------------------------------------ggggct      6
                                                                 ||||||
KPN2Jun2003      101 ctggtaacgacattcacaaatctgttatacttaacctacacattggggct    150

U00096             7 gattctggattcgacgggatttgcgaaacccaaggtgcatgccgaggggc     56
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
KPN2Jun2003      151 gattctggattcgacgggatttgcgaaacccaaggtgcatgccgaggggc    200

U00096            57 ggttggcctcgtaaaaagccgcaaaaaatagtcgcaaacgacgaaaacta    106
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
KPN2Jun2003      201 ggttggcctcgtaaaaagccgcaaaaaatagtcgcaaacgacgaaaacta    250

U00096           107 cgctttagcagcttaataacctgcttagagccctctctccctagcctccg    156
                     |||||||||||||||||||||||||..||||||||||||||||||.||||
KPN2Jun2003      251 cgctttagcagcttaataacctgctctgagccctctctccctagcttccg    300

U00096           157 ctcttaggacggggatc-aagagaggtcaaacccaaaagagatcgcgtgg    205
                     ||||||.|||||||||| ||||||||||||||||||||||||||||||||
KPN2Jun2003      301 ctcttaagacggggatcaaagagaggtcaaacccaaaagagatcgcgtgg    350

U00096           206 aagccctgcctggggttgaagcgttaaaacttaatcaggctagtttgtta    255
                     |.||||||||||||||||||||||||||.| |||||||||||||||||||
KPN2Jun2003      351 atgccctgcctggggttgaagcgttaaatc-taatcaggctagtttgtta    399

U00096           256 gtggcgtgtccgtccgcagctggcaagcgaatgtaaagactgactaagca    305
                     ||||||||||.|||||||||||||||||||||||||||||||||||||||
KPN2Jun2003      400 gtggcgtgtctgtccgcagctggcaagcgaatgtaaagactgactaagca    449

U00096           306 tgtagtaccgaggatgtaggaatttcggacgcgggttcaactcccgccag    355
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
KPN2Jun2003      450 tgtagtgccgaggatgtaggaatttcggacgcgggttcaactcccgccag    499

U00096           356 ctccacca------------------------------------------    363
                     ||||||||                                          
KPN2Jun2003      500 ctccaccaaacattcattcatgatgcatcatgaaccttaaaaaagcctgt    549

U00096           363 --------------------------------------------------    363
                                                                       
KPN2Jun2003      550 aacttcaacgagttgcaggcttttttgttgcatgtgtggtcatgatctct    599

U00096           363 --------------------------------------------------    363
                                                                       
KPN2Jun2003      600 gtatgaatcttgagcattatgtatcttgttttgtaccgcgttgcctggac    649

U00096           363 ------------------------    363
                                             
KPN2Jun2003      650 gctaaaaaaacaaggtgcaaaaac    673


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