########################################
# Program: needle
# Rundate: Fri Oct 06 2006 23:20:37
# Commandline: needle
#    [-asequence] yfjf_eco.txt
#    [-bsequence] yfjF_kpn.txt
#    [-outfile] yfjF.txt
#    -gapopen 10
#    -gapextend 10
# Align_format: srspair
# Report_file: yfjF.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: KPN2Jun2003
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 10.0
#
# Length: 357
# Identity:     201/357 (56.3%)
# Similarity:   201/357 (56.3%)
# Gaps:          79/357 (22.1%)
# Score: 667.0
# 
#
#=======================================

U00096             1 gtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagca     50
                                .|||...|||||.||.||.||.|||||.|||||.|||||
KPN2Jun2003        1 -----------tattcgtgttgaagtcgcctacgcgctgcctgaaaagca     39

U00096            51 gtacctgcagcgagtgacgctgcaggagggcgcgacggttgaagaagcta    100
                     |||.||||||||.||.||||||.|.|||||.||||||||.||..|.||.|
KPN2Jun2003       40 gtatctgcagcgggtcacgctggacgagggggcgacggtcgagcaggcga     89

U00096           101 ttcgcgccagtggcttgctggaattgcgtaccgatatcgatttaactaaa    150
                     ||..|| |||.||..||||||...|||||...||.||||||.|..|.|||
KPN2Jun2003       90 ttatcg-cagcggtctgctggcgctgcgtgatgacatcgatctggcgaaa    138

U00096           151 aacaaagtcggcatttacagccgtccggcaaaactaagcgatagtgtgca    200
                     |||||..|.||.||.||.||.|||||||.|||.||....||....||.||
KPN2Jun2003      139 aacaagctgggtatctatagtcgtccggtaaagctgcatgacgaagttca    188

U00096           201 tgatggcgatcgggtggagatttatcgccctctcattgccgatccgaaag    250
                     .||.|||||.||||||||.||.|||||.||.||.||.||.||.|||||||
KPN2Jun2003      189 cgacggcgaccgggtggaaatctatcgtccgctgatcgcagacccgaaag    238

U00096           251 agcttcgcaggcaacgagcaga-aaaatcagcgaataaataa--------    291
                     ||||.||..|.||.||.||||| ||||.|..||.| ||.|||        
KPN2Jun2003      239 agctgcgtcgccagcgggcagagaaaagcgccgca-aagtaacctgcagc    287

U00096           291 --------------------------------------------------    291
                                                                       
KPN2Jun2003      288 agaccgactatcagccataaaaaagcgctcatcgagcgctttttgctttt    337

U00096           291 -------    291
                            
KPN2Jun2003      338 ccgggcc    344


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