########################################
# Program: needle
# Rundate: Fri Oct 06 2006 21:25:42
# Commandline: needle
#    [-asequence] yeco.txt
#    [-bsequence] ykpn.txt
#    [-outfile] yres.txt
#    -gapopen 10
#    -gapextend 10
# Align_format: srspair
# Report_file: yres.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: KPN2Jun2003
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 10.0
#
# Length: 879
# Identity:     653/879 (74.3%)
# Similarity:   653/879 (74.3%)
# Gaps:          74/879 ( 8.4%)
# Score: 2637.0
# 
#
#=======================================

U00096             1 atgaataatcatttcaagtgtattggcattgtgggacacccacggcaccc     50
                                                                       
KPN2Jun2003        0 --------------------------------------------------      0

U00096            51 cactgcactgacaacacatgaaatgctctaccgctggctgtgcacaaaag    100
                                           |||.|||..|.||||.||||||..||||
KPN2Jun2003        1 ----------------------atgttctggccctgggtgtgcagcaaag     28

U00096           101 gttacgaggtcatcgttgagcaacaaatcgctcacgaactgcaactgaag    150
                     |.||..|.||..|..||||.||.||.|||||.||.||.||.||..|.|..
KPN2Jun2003       29 ggtataaagtgttgtttgaacagcagatcgcccatgatcttcagttcagc     78

U00096           151 aatgtgaaaactggcacgctcgcggagattgggcaactagctgatctcgc    200
                     ||.||||||.|.|||.||||.|||||||||||.||||..||.||||||.|
KPN2Jun2003       79 aacgtgaaacccggcccgctggcggagattggccaacaggccgatctccc    128

U00096           201 ggtagtcgttggtggcgacggtaatatgctgggcgcggcacgcacactcg    250
                     |||.||.||.||.|||||||..||||||.|.||||||||.||.||.||.|
KPN2Jun2003      129 ggtggtggtgggcggcgacgccaatatgttcggcgcggcgcggaccctgg    178

U00096           251 cccgttacgatattaaagttattggaatcaaccgtggcaacctgggtttc    300
                     ||||||||||.|||||.||.||.||.||.|||||.||||.|||.||.||.
KPN2Jun2003      179 cccgttacgacattaacgtcatcggcattaaccgcggcaccctcggcttt    228

U00096           301 ctgactgaccttgaccccgataacgcccagcaacagttagccgatgtgct    350
                     .|.||.|||||||||||.||.|||||||.|||.|||.|.|||||.|||||
KPN2Jun2003      229 ttcaccgaccttgacccggacaacgccctgcagcagctcgccgacgtgct    278

U00096           351 ggaaggccactacatcagcgagaaacgttttttgctggaagcgcaagtct    400
                     ||||||||||||||||..|||||||||.|||.|||||||.||.||.||.|
KPN2Jun2003      279 ggaaggccactacatcgccgagaaacgctttctgctggaggcccaggtgt    328

U00096           401 gtcagcaagattgccagaaacgcatcagcaccgcgataaatgaagtggtg    450
                     |||||||.||||||||||||||.|||||||||||.||.||.|||||||||
KPN2Jun2003      329 gtcagcaggattgccagaaacgtatcagcaccgccatcaacgaagtggtg    378

U00096           451 cttcatccaggcaaagtggcgcatatgattgagttcgaagtgtatatcga    500
                     ||.||.||.||||||||||||||||||||||||||||||||.||||||||
KPN2Jun2003      379 ctgcaccccggcaaagtggcgcatatgattgagttcgaagtctatatcga    428

U00096           501 cgagatctttgcgttttctcagcgatctgatggactaattatttcgacgc    550
                     |||..||||||||||.|||||||||||.|||||.||.|||||.||.||.|
KPN2Jun2003      429 cgaagtctttgcgttctctcagcgatccgatggcctgattatctccactc    478

U00096           551 caacaggctccaccgcctattccctctctgcaggcggtcctattctgacc    600
                     |.||.|||||||||||||||||.||.||.||.||||| ||.||.||.||.
KPN2Jun2003      479 cgaccggctccaccgcctattcgctgtcggccggcgg-ccaatccttacg    527

U00096           601 ccctctctggatgcgattaccctggtgcccatgttcccgcatacgttgtc    650
                     ||.||.|||||.||.||.|||||||||||.|||||||||||.||..|.||
KPN2Jun2003      528 ccgtcgctggacgccatcaccctggtgccgatgttcccgcacaccctttc    577

U00096           651 agcacgaccactggtcataaacagcagcagcacgatccgtctgcgttttt    700
                     |||.|||||.|||||.||.|||.||..|| |||.|||||.|||||.||.|
KPN2Jun2003      578 agcgcgaccgctggtgatcaacggcgaca-caccatccgcctgcgcttct    626

U00096           701 cgcatcgccgtaacgacctggaaatcagttgcgacagccagatagcactg    750
                     |.||.|||.|.|.|||.|||||.|||||.||||||||||||||.||.|||
KPN2Jun2003      627 ctcaccgctgcagcgatctggagatcagctgcgacagccagattgccctg    676

U00096           751 ccgattcaggaaggtgaagatgtcctgattcgtcgctgtgattaccatct    800
                     |||||.|||||.||.|||||||||||.|||||.|||||||||||.||.||
KPN2Jun2003      677 ccgatccaggatggcgaagatgtcctcattcgccgctgtgattatcacct    726

U00096           801 gaatctgattcatccgaaagattacagttatttcaacacattaagcacca    850
                     .|||||||||||.||.|||||||||||.||||||||.|||||||||||||
KPN2Jun2003      727 caatctgattcaccctaaagattacagctatttcaatacattaagcacca    776

U00096           851 agctcggctggtcaaaaaaattattctaa    879
                     |||||||||||||.||||||||.||||.|
KPN2Jun2003      777 agctcggctggtcgaaaaaattgttctga    805


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