PDB data file name: rna.pdb Base-pair criteria used: 4.00 15.00 2.50 65.00 4.50 7.50 ON Six-line information for each base-pair as follows: #1: overall serial number, local serial number, paired residue numbers, detailed pairing residue information. #2: one-letter base-pair followed by six base-pair parameters (shear, stretch, stagger, buckle, propeller, opening). The parameters are with respect to the Watson-Crick base reference frame. There are two types of base-pair orientation: A-B means the two bases have opposite orientations as in Watson-Crick base-pair; A+B means the two bases have the same local orientations as in Hoogsteen base- pair. All possible base pairing patterns can then be classified based on the six parameters, among which shear, stretch and opening are most discriminative. #3: H-bonding information (atom pair followed by their distance). #4: Overall classification of the base-pair (anti-parallel vs parallel based on relative z-axis of the two bases, cis vs trans based on x-axis and C1-RN9/YN1 directions). #5: Relative directions of the three axes and their numerical values. The last 3 numbers are the angles between the glycosidic bonds, and the two chi torsion angles. #6: The actual parameters used to locate the base-pair in question. 1 1 1 70 C:.501_:[..G]G-*---U[..U]:.571_:C G-U -1.10 0.91 -2.19 10.98 -17.96 -37.69 G-U [1] O6 * O4 3.64 anti-parallel cis trans +-- 41.4 141.3 158.9 108.5 -176.2 -160.2 2.62 2.19 21.05 10.56 7.01 25.50 88.98 66.77 2 2 1 71 C:.501_:[..G]G-----C[..C]:.572_:C G-C -0.31 -0.31 0.35 1.10 -18.94 -9.61 G-C [3] O6 - N4 2.65 N1 - N3 2.87 N2 - O2 3.16 anti-parallel cis cis +-- 21.2 170.5 161.0 84.1 -176.2 -168.6 0.56 0.35 18.97 8.97 -0.25 26.04 89.64 67.92 3 1 2 70 C:.502_:[..G]G-*---U[..U]:.571_:C G-U -2.23 -0.46 0.47 9.92 -10.92 -2.05 G-U [2] O6 - N3 2.90 N1 - O2 2.87 anti-parallel cis cis +-- 11.1 169.9 165.2 71.9 -163.3 -160.2 2.33 0.47 14.75 8.90 3.27 25.17 88.94 65.01 4 1 3 69 C:.503_:[..C]C-----G[..G]:.570_:C C-G -0.10 -0.05 0.14 10.52 -13.31 -1.62 C-G [3] O2 - N2 2.90 N3 - N1 2.96 N4 - O6 2.95 anti-parallel cis cis +-- 13.4 169.4 163.0 74.0 -162.0 -168.7 0.18 0.14 16.97 9.04 -1.03 23.38 87.29 62.70 5 1 4 68 C:.504_:[..C]C-----G[..G]:.569_:C C-G 0.35 0.02 -0.16 12.10 -8.53 2.39 C-G [3] O2 - N2 2.82 N3 - N1 3.03 N4 - O6 3.13 anti-parallel cis cis +-- 8.8 167.7 165.2 69.1 -155.4 -171.5 0.38 0.16 14.81 9.02 -0.79 21.15 84.74 61.56 6 1 5 67 C:.505_:[..C]C-----G[..G]:.568_:C C-G -0.01 -0.17 0.06 6.05 -10.11 -4.15 C-G [3] O2 - N2 2.90 N3 - N1 2.87 N4 - O6 2.74 anti-parallel cis cis +-- 10.9 172.7 168.2 76.5 -162.5 -168.2 0.18 0.06 11.78 9.01 -1.21 18.54 81.97 60.72 7 1 6 66 C:.506_:[..C]C-----G[..G]:.567_:C C-G 0.31 -0.22 0.30 -4.58 -13.32 0.71 C-G [3] O2 - N2 2.71 N3 - N1 2.81 N4 - O6 2.89 anti-parallel cis cis +-- 13.3 175.4 165.9 71.0 -167.1 -158.7 0.48 0.30 14.08 8.85 -0.42 14.99 80.91 60.66 8 1 7 65 C:.507_:[..A]A-----U[..U]:.566_:C A-U 0.74 0.02 0.11 -0.97 -10.16 -4.23 A-U [2] N6 - O4 2.95 N1 - N3 3.00 anti-parallel cis cis +-- 11.0 175.7 169.8 74.3 -117.7 -155.3 0.75 0.11 10.21 9.15 -0.54 11.57 80.27 60.70 9 1 8 14 C:.508_:[..U]U-**--A[..A]:.514_:C U-A 4.02 -2.22 1.02 -9.57 21.64 -93.00 U-A [3] O2 - N6 2.57 N3 - N7 2.72 O4 * O2P 3.23 anti-parallel trans trans -+- 94.5 88.7 156.3 161.6 -150.8 -168.5 4.70 1.02 23.66 7.03 6.75 10.22 64.80 49.14 10 2 8 21 C:.508_:[..U]U-**+-A[..A]:.521_:C U+A -2.40 -7.84 0.42 -9.46 24.44 -142.22 U+A [2] O2'- N1 3.00 O2 * N3 3.80 parallel trans trans --+ 142.0 135.4 26.2 137.6 -150.8 -163.3 8.21 0.42 26.21 8.06 9.04 9.46 65.60 52.34 11 3 8 22 C:.508_:[..U]U-**+-G[..G]:.522_:C U+G 1.09 0.20 -2.31 -3.96 15.52 -115.67 U+G [1] O2 * O6 3.75 parallel trans trans --+ 116.2 114.1 16.0 114.9 -150.8 -169.7 2.56 2.31 16.01 9.28 7.19 12.70 64.14 49.78 12 4 8 46 C:.508_:[..U]U-**--A[..A]:.546_:C U-A 2.17 4.20 -2.26 1.86 -15.07 140.34 U-A [3] O3'- O2' 2.77 O2'- N3 3.23 O2 * N1 3.61 anti-parallel trans cis -+- 140.7 42.3 164.8 71.2 -150.8 -127.2 5.24 2.26 15.18 6.35 9.76 10.91 63.86 51.02 13 1 9 23 C:.509_:[..C]C-**+-G[..G]:.523_:C C+G 5.43 -5.54 0.10 -12.58 -3.70 176.60 C+G [1] N4 - N7 2.93 parallel trans trans --+ 167.0 175.0 13.1 172.0 -128.2 -171.2 7.76 0.10 13.11 8.90 7.96 12.48 59.94 52.91 14 1 10 25 C:.510_:[..G]G-----C[..C]:.525_:C G-C 0.05 -0.19 0.35 12.91 2.36 -1.78 G-C [3] O6 - N4 2.75 N1 - N3 2.81 N2 - O2 2.76 anti-parallel cis cis +-- 2.9 167.0 166.9 73.1 -175.7 -169.7 0.40 0.35 13.12 8.89 -0.39 16.85 57.82 59.06 15 2 10 45 C:.510_:[..G]G-**+-A[..A]:.545_:C G+A -6.31 -0.34 -1.09 23.72 -1.57 22.86 G+A [2] O1P- O2' 3.97 O6 * N3 3.63 parallel cis cis +++ 22.4 32.8 23.8 23.6 -175.7 -146.7 6.41 1.09 23.77 8.17 8.60 14.29 57.21 57.11 16 1 11 24 C:.511_:[..U]U-----A[..A]:.524_:C U-A -0.60 -0.14 0.12 -2.71 -11.59 6.03 U-A [2] N3 - N1 2.76 O4 - N6 3.11 anti-parallel cis cis +-- 13.1 173.4 168.1 64.7 -170.9 -164.8 0.63 0.12 11.90 8.73 -0.64 16.73 59.74 55.35 17 1 12 23 C:.512_:[..C]C-----G[..G]:.523_:C C-G 0.14 -0.23 -0.00 -0.56 -4.88 -1.01 C-G [3] O2 - N2 2.74 N3 - N1 2.80 N4 - O6 2.76 anti-parallel cis cis +-- 5.0 178.8 175.1 72.3 -154.4 -171.2 0.26 0.00 4.91 8.89 -1.23 15.90 61.27 52.12 18 1 13 22 C:.513_:[..U]U-*---G[..G]:.522_:C U-G 2.30 -0.55 -0.36 6.18 -2.82 6.47 U-G [2] O2 - N1 2.56 N3 - O6 2.90 anti-parallel cis cis +-- 7.0 171.1 173.2 63.9 -173.0 -169.7 2.39 0.36 6.80 8.65 3.11 12.39 63.03 51.07 19 2 13 46 C:.513_:[..U]U-**+-A[..A]:.546_:C U+A -2.45 0.88 -0.36 1.30 -7.69 109.41 U+A [1] O4 * N3 3.61 parallel trans trans --+ 109.6 109.1 7.8 109.8 -173.0 -127.2 2.63 0.36 7.80 9.85 3.35 10.61 62.75 52.31 20 1 14 21 C:.514_:[..A]A-*---A[..A]:.521_:C A-A -6.69 -0.92 -0.18 -5.93 -7.45 47.23 A-A [2] N6 - N3 3.09 N1 - O2' 2.83 anti-parallel cis cis +-- 47.7 132.5 170.5 24.1 -168.5 -163.3 6.76 0.18 9.52 9.19 7.13 7.22 65.02 51.94 21 1 15 19 C:.515_:[..G]G-*---U[..U]:.520_:C G-U 5.19 0.68 0.80 23.03 16.87 67.65 G-U [1] N2 - O4 2.97 anti-parallel cis cis +-- 67.9 109.8 151.5 26.0 -154.6 -123.5 5.29 0.80 28.54 8.68 6.90 7.00 67.08 49.19 22 2 15 47 C:.515_:[..G]G-**+-C[..C]:.548_:C G+C 0.07 3.66 -0.60 -7.42 -0.28 165.23 G+C [2] N1 - O2 3.13 N2 - N3 2.77 parallel trans trans --+ 163.5 165.3 7.4 162.9 -154.6 -130.4 3.71 0.60 7.42 9.03 4.92 6.56 68.08 50.36 23 1 17 54 C:.518_:[..G]G-**+-U[..U]:.555_:C G+U -0.32 5.85 -0.48 -23.08 9.03 95.81 G+U [1] N2 - O2 2.65 parallel trans trans --+ 93.6 97.5 24.8 92.1 -91.0 -149.5 5.88 0.48 24.78 8.25 6.84 -4.60 78.55 47.58 24 1 18 55 C:.519_:[..G]G-----C[..C]:.556_:C G-C 0.11 0.05 0.06 -20.38 -33.17 5.53 G-C [3] O6 - N4 3.33 N1 - N3 2.92 N2 - O2 2.81 anti-parallel cis cis +-- 33.4 159.2 141.1 71.5 -60.2 -169.5 0.13 0.06 38.93 8.90 -1.26 -7.08 73.69 40.24 25 1 19 47 C:.520_:[..U]U-**--C[..C]:.548_:C U-C -2.01 2.24 1.05 7.87 29.26 -99.46 U-C [1] O4 - N4 2.78 anti-parallel trans trans -+- 102.3 84.6 149.7 163.2 -123.5 -130.4 3.19 1.05 30.30 10.22 5.29 5.33 66.62 48.54 26 1 22 46 C:.522_:[..G]G-**--A[..A]:.546_:C G-A -4.31 0.81 0.04 -4.14 11.01 -102.50 G-A [2] N7 - N6 3.13 O6 * N1 2.81 anti-parallel trans trans -+- 102.8 78.1 168.2 173.2 -169.7 -127.2 4.38 0.04 11.76 9.51 4.46 11.16 62.63 51.25 27 1 24 45 C:.524_:[..A]A-*---A[..A]:.545_:C A-A -5.46 0.74 -1.51 14.26 -4.79 -53.81 A-A [1] N6 - N1 3.93 anti-parallel cis trans +-- 53.6 124.5 165.0 122.5 -164.8 -146.7 5.71 1.51 15.05 11.37 8.73 14.08 58.11 55.41 28 1 26 44 C:.526_:[..G]G-*---A[..A]:.544_:C G-A -0.15 1.56 -0.19 21.12 -21.13 -11.77 G-A [2] O6 - N6 3.08 N1 - N1 2.88 anti-parallel cis cis +-- 23.9 156.1 150.1 83.3 -161.8 -152.0 1.58 0.19 29.87 10.68 1.95 13.51 54.14 58.97 29 1 27 43 C:.527_:[..C]C-----G[..G]:.543_:C C-G 0.09 0.03 0.07 16.27 -23.28 2.25 C-G [3] O2 - N2 2.85 N3 - N1 2.97 N4 - O6 3.17 anti-parallel cis cis +-- 23.3 163.7 151.6 71.2 -159.7 -163.9 0.12 0.07 28.40 8.99 -1.23 12.97 50.61 58.16 30 1 28 42 C:.528_:[..G]G-----C[..C]:.542_:C G-C -0.35 -0.05 -0.12 -2.38 -9.45 5.29 G-C [3] O6 - N4 3.16 N1 - N3 2.95 N2 - O2 2.64 anti-parallel cis cis +-- 10.8 174.2 170.3 67.0 -167.2 -161.0 0.38 0.12 9.74 8.92 -0.88 12.51 46.68 57.49 31 1 29 41 C:.529_:[..G]G-----C[..C]:.541_:C G-C -0.56 -0.42 -0.03 -2.04 -7.17 0.31 G-C [3] O6 - N4 2.71 N1 - N3 2.71 N2 - O2 2.61 anti-parallel cis cis +-- 7.2 177.9 172.5 70.2 -167.6 -161.4 0.70 0.03 7.46 8.67 -0.73 13.10 43.41 55.88 32 1 30 40 C:.530_:[..C]C-----G[..G]:.540_:C C-G 0.81 -0.07 0.06 -1.03 -11.74 7.49 C-G [3] O2 - N2 2.64 N3 - N1 3.00 N4 - O6 3.33 anti-parallel cis cis +-- 13.9 172.5 168.2 66.2 -162.4 -165.7 0.81 0.06 11.78 8.88 -0.57 15.52 41.00 54.67 33 1 31 39 C:.531_:[..C]C-----G[..G]:.539_:C C-G 0.25 -0.07 0.10 -6.42 -11.81 3.77 C-G [3] O2 - N2 2.71 N3 - N1 2.91 N4 - O6 3.09 anti-parallel cis cis +-- 12.4 172.6 166.6 69.7 -160.4 -168.9 0.28 0.10 13.45 8.93 -1.01 18.54 39.02 53.85 34 1 32 38 C:.532_:[..C]C-*---A[..A]:.538_:C C-A 4.71 -0.78 1.34 -16.59 6.94 1.65 C-A [1] O2 - N6 3.07 anti-parallel cis cis +-- 7.1 163.3 162.0 70.9 -161.6 -170.3 4.95 1.34 17.98 9.50 7.63 21.51 36.76 54.51 35 1 47 58 C:.548_:[..C]C-**+-U[..U]:.559_:C C+U -0.56 3.24 -2.46 -13.73 5.18 9.51 C+U [2] O2'- O2' 4.00 N3 * O4' 3.34 parallel cis cis +++ 10.8 16.7 14.7 11.7 -130.4 -164.7 4.11 2.46 14.67 4.78 9.03 4.82 68.33 47.78 36 1 48 64 C:.549_:[..G]G-----C[..C]:.565_:C G-C -0.83 0.28 0.33 0.04 -8.69 10.48 G-C [3] O6 - N4 3.76 N1 - N3 3.31 N2 - O2 2.76 anti-parallel cis cis +-- 13.6 169.6 171.3 62.4 -175.9 -168.6 0.94 0.33 8.69 9.15 0.10 7.81 80.12 61.18 37 1 49 63 C:.550_:[..G]G-----C[..C]:.564_:C G-C 0.52 -0.04 -0.39 -3.35 -3.97 1.07 G-C [3] O6 - N4 2.98 N1 - N3 2.96 N2 - O2 2.81 anti-parallel cis cis +-- 4.1 176.5 174.8 70.9 -162.3 -167.3 0.65 0.39 5.19 9.05 -0.08 4.52 81.98 60.16 38 1 50 62 C:.551_:[..G]G-----C[..C]:.563_:C G-C 0.43 0.03 -0.08 -1.82 -0.80 5.29 G-C [3] O6 - N4 3.17 N1 - N3 2.97 N2 - O2 2.63 anti-parallel cis cis +-- 5.4 174.4 178.0 66.8 -163.8 -162.4 0.44 0.08 1.99 9.00 -0.90 2.42 82.91 57.58 39 1 51 61 C:.552_:[..G]G-----C[..C]:.562_:C G-C -0.07 -0.17 -0.33 -1.09 -5.21 0.98 G-C [3] O6 - N4 2.86 N1 - N3 2.86 N2 - O2 2.73 anti-parallel cis cis +-- 5.3 178.5 174.7 70.6 177.3 -165.0 0.38 0.33 5.32 8.91 -0.46 0.99 83.22 54.04 40 1 52 57 C:.553_:[..G]G-**--A[..A]:.558_:C G-A 4.30 2.65 -2.46 1.84 2.98 -148.03 G-A [1] O6 * N7 3.50 anti-parallel trans trans -+- 148.0 32.1 176.5 139.3 161.6 -142.7 5.62 2.46 3.50 9.18 10.53 0.34 80.30 47.83 41 2 52 60 C:.553_:[..G]G-----C[..C]:.561_:C G-C -0.51 -0.35 0.59 -1.41 0.14 -7.38 G-C [3] O6 - N4 2.64 N1 - N3 2.92 N2 - O2 3.08 anti-parallel cis cis +-- 7.4 172.5 178.6 80.6 161.6 179.2 0.86 0.59 1.42 8.93 0.55 0.04 81.52 50.63 42 1 53 57 C:.554_:[..U]U-**--A[..A]:.558_:C U-A 3.95 -1.43 0.77 7.59 3.12 -94.50 U-A [3] O2 - N6 3.05 N3 - N7 3.23 O4 * O2P 3.82 anti-parallel trans trans -+- 94.3 85.3 171.8 162.0 -161.0 -142.7 4.27 0.77 8.21 7.68 5.82 -0.72 78.99 46.94 Detailed pairing information for each base 1 C:.501_:[..G]G: [ 2] 70 71 [ 3] 70 71 2 [ 1] 71 [ 1] 71 2 C:.502_:[..G]G: [ 1] 70 [ 3] 70 1 71 [ 1] 70 [ 1] 70 3 C:.503_:[..C]C: [ 1] 69 [ 1] 69 [ 1] 69 [ 1] 69 4 C:.504_:[..C]C: [ 1] 68 [ 1] 68 [ 1] 68 [ 1] 68 5 C:.505_:[..C]C: [ 1] 67 [ 1] 67 [ 1] 67 [ 1] 67 6 C:.506_:[..C]C: [ 1] 66 [ 1] 66 [ 1] 66 [ 1] 66 7 C:.507_:[..A]A: [ 1] 65 [ 1] 65 [ 1] 65 [ 1] 65 8 C:.508_:[..U]U: [ 4] 14 21 22 46 [ 5] 14 21 22 46 13 [ 2] 21 14 [ 2] 21 14 9 C:.509_:[..C]C: [ 1] 23 [ 2] 23 12 [ 2] 23 12 [ 2] 23 12 10 C:.510_:[..G]G: [ 2] 25 45 [ 4] 25 45 24 11 [ 2] 25 45 [ 2] 25 45 11 C:.511_:[..U]U: [ 1] 24 [ 4] 24 45 10 25 [ 2] 24 45 [ 2] 24 45 12 C:.512_:[..C]C: [ 1] 23 [ 2] 23 9 [ 2] 23 9 [ 2] 23 9 13 C:.513_:[..U]U: [ 2] 22 46 [ 5] 22 46 8 21 14 [ 2] 22 46 [ 2] 22 46 14 C:.514_:[..A]A: [ 2] 8 21 [ 2] 8 21 [ 2] 21 8 [ 2] 21 8 15 C:.515_:[..G]G: [ 2] 19 47 [ 3] 19 47 58 [ 2] 47 19 [ 2] 47 19 16 C:.516_:[..C]C: [ 0] [ 0] [ 0] [ 0] 17 C:.518_:[..G]G: [ 1] 54 [ 1] 54 [ 1] 54 [ 1] 54 18 C:.519_:[..G]G: [ 1] 55 [ 1] 55 [ 1] 55 [ 1] 55 19 C:.520_:[..U]U: [ 2] 15 47 [ 3] 15 47 58 [ 2] 15 47 [ 2] 15 47 20 C:.520A:[..U]U: [ 0] [ 0] [ 0] [ 0] 21 C:.521_:[..A]A: [ 2] 8 14 [ 2] 8 14 [ 2] 14 8 [ 2] 14 8 22 C:.522_:[..G]G: [ 3] 8 13 46 [ 5] 8 13 46 21 14 [ 2] 46 13 [ 2] 46 13 23 C:.523_:[..G]G: [ 2] 9 12 [ 2] 9 12 [ 2] 12 9 [ 2] 12 9 24 C:.524_:[..A]A: [ 2] 11 45 [ 4] 11 45 10 25 [ 2] 11 45 [ 2] 11 45 25 C:.525_:[..C]C: [ 1] 10 [ 4] 10 45 24 11 [ 2] 10 45 [ 2] 10 45 26 C:.526_:[..G]G: [ 1] 44 [ 1] 44 [ 1] 44 [ 1] 44 27 C:.527_:[..C]C: [ 1] 43 [ 1] 43 [ 1] 43 [ 1] 43 28 C:.528_:[..G]G: [ 1] 42 [ 1] 42 [ 1] 42 [ 1] 42 29 C:.529_:[..G]G: [ 1] 41 [ 1] 41 [ 1] 41 [ 1] 41 30 C:.530_:[..C]C: [ 1] 40 [ 1] 40 [ 1] 40 [ 1] 40 31 C:.531_:[..C]C: [ 1] 39 [ 1] 39 [ 1] 39 [ 1] 39 32 C:.532_:[..C]C: [ 1] 38 [ 1] 38 [ 1] 38 [ 1] 38 33 C:.533_:[..U]U: [ 0] [ 0] [ 0] [ 0] 34 C:.534_:[..C]C: [ 0] [ 0] [ 0] [ 0] 35 C:.535_:[..U]U: [ 0] [ 0] [ 0] [ 0] 36 C:.536_:[..C]C: [ 0] [ 0] [ 0] [ 0] 37 C:.537_:[..A]A: [ 0] [ 0] [ 0] [ 0] 38 C:.538_:[..A]A: [ 1] 32 [ 1] 32 [ 1] 32 [ 1] 32 39 C:.539_:[..G]G: [ 1] 31 [ 1] 31 [ 1] 31 [ 1] 31 40 C:.540_:[..G]G: [ 1] 30 [ 1] 30 [ 1] 30 [ 1] 30 41 C:.541_:[..C]C: [ 1] 29 [ 1] 29 [ 1] 29 [ 1] 29 42 C:.542_:[..C]C: [ 1] 28 [ 1] 28 [ 1] 28 [ 1] 28 43 C:.543_:[..G]G: [ 1] 27 [ 1] 27 [ 1] 27 [ 1] 27 44 C:.544_:[..A]A: [ 1] 26 [ 1] 26 [ 1] 26 [ 1] 26 45 C:.545_:[..A]A: [ 2] 10 24 [ 4] 10 24 25 11 [ 2] 10 25 [ 2] 10 25 46 C:.546_:[..A]A: [ 3] 8 13 22 [ 5] 8 13 22 21 14 [ 2] 22 13 [ 2] 22 13 47 C:.548_:[..C]C: [ 3] 15 19 58 [ 3] 15 19 58 [ 2] 15 19 [ 2] 15 19 48 C:.549_:[..G]G: [ 1] 64 [ 1] 64 [ 1] 64 [ 1] 64 49 C:.550_:[..G]G: [ 1] 63 [ 1] 63 [ 1] 63 [ 1] 63 50 C:.551_:[..G]G: [ 1] 62 [ 1] 62 [ 1] 62 [ 1] 62 51 C:.552_:[..G]G: [ 1] 61 [ 1] 61 [ 1] 61 [ 1] 61 52 C:.553_:[..G]G: [ 2] 57 60 [ 3] 57 60 53 [ 1] 60 [ 1] 60 53 C:.554_:[..U]U: [ 1] 57 [ 3] 57 52 60 [ 1] 57 [ 1] 57 54 C:.555_:[..U]U: [ 1] 17 [ 1] 17 [ 1] 17 [ 1] 17 55 C:.556_:[..C]C: [ 1] 18 [ 1] 18 [ 1] 18 [ 1] 18 56 C:.557_:[..G]G: [ 0] [ 0] [ 0] [ 0] 57 C:.558_:[..A]A: [ 2] 52 53 [ 3] 52 53 60 [ 1] 53 [ 1] 53 58 C:.559_:[..U]U: [ 1] 47 [ 3] 47 15 19 [ 2] 47 19 [ 2] 47 19 59 C:.560_:[..U]U: [ 0] [ 0] [ 0] [ 0] 60 C:.561_:[..C]C: [ 1] 52 [ 1] 52 [ 1] 52 [ 1] 52 61 C:.562_:[..C]C: [ 1] 51 [ 1] 51 [ 1] 51 [ 1] 51 62 C:.563_:[..C]C: [ 1] 50 [ 1] 50 [ 1] 50 [ 1] 50 63 C:.564_:[..C]C: [ 1] 49 [ 1] 49 [ 1] 49 [ 1] 49 64 C:.565_:[..C]C: [ 1] 48 [ 1] 48 [ 1] 48 [ 1] 48 65 C:.566_:[..U]U: [ 1] 7 [ 1] 7 [ 1] 7 [ 1] 7 66 C:.567_:[..G]G: [ 1] 6 [ 1] 6 [ 1] 6 [ 1] 6 67 C:.568_:[..G]G: [ 1] 5 [ 1] 5 [ 1] 5 [ 1] 5 68 C:.569_:[..G]G: [ 1] 4 [ 1] 4 [ 1] 4 [ 1] 4 69 C:.570_:[..G]G: [ 1] 3 [ 1] 3 [ 1] 3 [ 1] 3 70 C:.571_:[..U]U: [ 2] 1 2 [ 3] 1 2 71 [ 1] 2 [ 1] 2 71 C:.572_:[..C]C: [ 1] 1 [ 1] 1 [ 1] 1 [ 1] 1 72 C:.573_:[..A]A: [ 0] [ 0] [ 0] [ 0] 73 C:.574_:[..C]C: [ 0] [ 0] [ 0] [ 0] 74 C:.575_:[..C]C: [ 0] [ 0] [ 0] [ 0] 75 C:.576_:[..A]A: [ 0] [ 0] [ 0] [ 0] Summary of triplets and higher multiplets ====================== initial lists ====================== 8[+3]: 8 14 21 9[+3]: 9 12 23 10[+3]: 10 25 45 11[+3]: 11 24 45 12[+3]: 9 12 23 13[+3]: 13 22 46 14[+3]: 8 14 21 15[+3]: 15 19 47 19[+3]: 15 19 47 21[+3]: 8 14 21 22[+3]: 13 22 46 23[+3]: 9 12 23 24[+3]: 11 24 45 25[+3]: 10 25 45 45[+3]: 10 25 45 46[+3]: 13 22 46 47[+3]: 15 19 47 58[+3]: 19 47 58 ====================== perfect match ====================== 1[+3]: 8 14 21 2[+3]: 9 12 23 3[+3]: 10 25 45 4[+3]: 13 22 46 5[+3]: 15 19 47 ====================== partial match ====================== 1[+3]: 11 24 45 2[+3]: 19 47 58 ===================== perfect match ===================== 1: #3 [8]C:.508_:[..U]U + [14]C:.514_:[..A]A + [21]C:.521_:[..A]A 2: #3 [9]C:.509_:[..C]C + [12]C:.512_:[..C]C + [23]C:.523_:[..G]G 3: #3 [10]C:.510_:[..G]G + [25]C:.525_:[..C]C + [45]C:.545_:[..A]A 4: #3 [13]C:.513_:[..U]U + [22]C:.522_:[..G]G + [46]C:.546_:[..A]A 5: #3 [15]C:.515_:[..G]G + [19]C:.520_:[..U]U + [47]C:.548_:[..C]C ===================== partial match ===================== 6: #3 [11]C:.511_:[..U]U + [24]C:.524_:[..A]A + [45]C:.545_:[..A]A 7: #3 [19]C:.520_:[..U]U + [47]C:.548_:[..C]C + [58]C:.559_:[..U]U