ðàçëè÷íûå òÐÍÊ ñ àíòèêîäîíîì GAU:

########################################
# Program: needle
# Rundate: Mon Oct 02 2006 19:13:00
# Commandline: needle
#    [-asequence] trnaG1.fasta
#    [-bsequence] trnaG2.fasta
#    [-outfile] G1.txt
# Align_format: srspair
# Report_file: G1.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: U00096
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 77
# Identity:      77/77 (100.0%)
# Similarity:    77/77 (100.0%)
# Gaps:           0/77 ( 0.0%)
# Score: 385.0
# 
#
#=======================================

U00096             1 aggcttgtagctcaggtggttagagcgcacccctgataagggtgaggtcg     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
U00096             1 aggcttgtagctcaggtggttagagcgcacccctgataagggtgaggtcg     50

U00096            51 gtggttcaagtccactcaggcctacca     77
                     |||||||||||||||||||||||||||
U00096            51 gtggttcaagtccactcaggcctacca     77


#---------------------------------------
#---------------------------------------

########################################
# Program: needle
# Rundate: Mon Oct 02 2006 19:13:21
# Commandline: needle
#    [-asequence] trnaG1.fasta
#    [-bsequence] trnaG3.fasta
#    [-outfile] G2.txt
# Align_format: srspair
# Report_file: G2.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: U00096
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 77
# Identity:      77/77 (100.0%)
# Similarity:    77/77 (100.0%)
# Gaps:           0/77 ( 0.0%)
# Score: 385.0
# 
#
#=======================================

U00096             1 aggcttgtagctcaggtggttagagcgcacccctgataagggtgaggtcg     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
U00096             1 aggcttgtagctcaggtggttagagcgcacccctgataagggtgaggtcg     50

U00096            51 gtggttcaagtccactcaggcctacca     77
                     |||||||||||||||||||||||||||
U00096            51 gtggttcaagtccactcaggcctacca     77


#---------------------------------------
#---------------------------------------




	ðàçëè÷íûå òÐÍÊ ñ àíòèêîäîíîì CAU

########################################
# Program: needle
# Rundate: Mon Oct 02 2006 19:13:50
# Commandline: needle
#    [-asequence] trnaC1.fasta
#    [-bsequence] trnaC2.fasta
#    [-outfile] C.txt
# Align_format: srspair
# Report_file: C.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: U00096
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 76
# Identity:      74/76 (97.4%)
# Similarity:    74/76 (97.4%)
# Gaps:           0/76 ( 0.0%)
# Score: 362.0
# 
#
#=======================================

U00096             1 ggccctttagctcagtggttagagcaggcgactcataatcgcttggtcgc     50
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
U00096             1 ggccccttagctcagtggttagagcaggcgactcataatcgcttggtcgc     50

U00096            51 tggttcaagtccagcaagggccacca     76
                     ||||||||||||||||.|||||||||
U00096            51 tggttcaagtccagcaggggccacca     76


#---------------------------------------
#---------------------------------------



	òÐÍÊ ñ àíòèêîäîíîì GAU è òÐÍÊ ñ àíòèêîäîíîì CAU

########################################
# Program: needle
# Rundate: Mon Oct 02 2006 19:27:51
# Commandline: needle
#    [-asequence] trnaC1.fasta
#    [-bsequence] trnaG1.fasta
#    [-outfile] CG.txt
#    -gapopen 20
#    -gapextend 10
# Align_format: srspair
# Report_file: CG.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: U00096
# 2: U00096
# Matrix: EDNAFULL
# Gap_penalty: 20.0
# Extend_penalty: 10.0
#
# Length: 77
# Identity:      55/77 (71.4%)
# Similarity:    55/77 (71.4%)
# Gaps:           1/77 ( 1.3%)
# Score: 171.0
# 
#
#=======================================

U00096             1 ggccctttagctca-gtggttagagcaggcgactcataatcgcttggtcg     49
                     .|.|.|.||||||| |||||||||||...|..||.||||..|...|||||
U00096             1 aggcttgtagctcaggtggttagagcgcacccctgataagggtgaggtcg     50

U00096            50 ctggttcaagtccagcaagggccacca     76
                     .|||||||||||||...|||.|.||||
U00096            51 gtggttcaagtccactcaggcctacca     77


#---------------------------------------
#---------------------------------------