########################################
# Program: needle
# Rundate: Wed Apr 04 2007 10:06:53
# Commandline: needle
#    [-asequence] Q640N8.fasta
#    [-bsequence] 1SOR.fasta
#    [-outfile] myprot.txt
# Align_format: srspair
# Report_file: myprot.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: Q640N8_MOUSE
# 2: SEQUENCE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 263
# Identity:     224/263 (85.2%)
# Similarity:   229/263 (87.1%)
# Gaps:          28/263 (10.6%)
# Score: 1161.0
# 
#
#=======================================


Q640N8_MOUSE       1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGL     50
                         ||||||||||||||||||||||||||||||||||||||||||||||
SEQUENCE           1 ----RSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGL     46

Q640N8_MOUSE      51 ALATLVQTVGHISGAHVNPAITFAFLVGSQMSLLRAFCYIAAQLLGAVAG    100
                     |||||||.||||||||||||:|||||||||||||||.||:.|||||||||
SEQUENCE          47 ALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAG     96

Q640N8_MOUSE     101 AAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYD    150
                     ||||||||||||||||||||||.||||||||.||||||||||||||||||
SEQUENCE          97 AAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD    146

Q640N8_MOUSE     151 ERRNGRMGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSN    200
                     ||||||:|||||||||||||||||||||||||||||||||||||||||:|
SEQUENCE         147 ERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTN    196

Q640N8_MOUSE     201 HWVYWVGPIIGGGLGSLLYDFLLFPRLKSVSERLSILKGARPSDSNGQPE    250
                     ||||||||:||.|||||||||||||||||||||||||||           
SEQUENCE         197 HWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLSILKG-----------    235

Q640N8_MOUSE     251 GTGEPVELKTQAL    263
                                  
SEQUENCE         235 -------------    235


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