########################################
# Program: needle
# Rundate: Wed Apr 04 2007 10:06:05
# Commandline: needle
#    [-asequence] Q6J8I9.fasta
#    [-bsequence] 1SOR.fasta
#    [-outfile] prototype.txt
# Align_format: srspair
# Report_file: prototype.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: MIP_SHEEP
# 2: SEQUENCE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 263
# Identity:     235/263 (89.4%)
# Similarity:   235/263 (89.4%)
# Gaps:          28/263 (10.6%)
# Score: 1199.0
# 
#
#=======================================

MIP_SHEEP          1 MWELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGL     50
                         ||||||||||||||||||||||||||||||||||||||||||||||
SEQUENCE           1 ----RSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGL     46

MIP_SHEEP         51 ALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAG    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
SEQUENCE          47 ALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAG     96

MIP_SHEEP        101 AAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
SEQUENCE          97 AAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD    146

MIP_SHEEP        151 ERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTN    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
SEQUENCE         147 ERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTN    196

MIP_SHEEP        201 HWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLSILKGTRPSESNGQPE    250
                     |||||||||||||||||||||||||||||||||||||||           
SEQUENCE         197 HWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLSILKG-----------    235

MIP_SHEEP        251 VTGEPVELKTQAL    263
                                  
SEQUENCE         235 -------------    235


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