RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.003) ....>T:...1_:[..G]G-----C[..C]:..72_:T<.... (0.003) | 2 (0.008) ....>T:...2_:[..G]G-----C[..C]:..71_:T<.... (0.005) | 3 (0.007) ....>T:...3_:[..G]G-----C[..C]:..70_:T<.... (0.004) | 4 (0.009) ....>T:...4_:[..C]C-----G[..G]:..69_:T<.... (0.007) | 5 (0.007) ....>T:...5_:[..U]U-*---G[..G]:..68_:T<.... (0.009) | 6 (0.006) ....>T:...6_:[..U]U-----A[..A]:..67_:T<.... (0.004) | 7 (0.008) ....>T:...7_:[..G]G-----C[..C]:..66_:T<.... (0.002) | 8 (0.006) ....>T:..49_:[..G]G-*---U[..U]:..65_:T<.... (0.005) | 9 (0.005) ....>T:..50_:[..G]G-----C[..C]:..64_:T<.... (0.002) | 10 (0.003) ....>T:..51_:[..U]U-----A[..A]:..63_:T<.... (0.001) | 11 (0.004) ....>T:..52_:[..G]G-----C[..C]:..62_:T<.... (0.004) | 12 (0.007) ....>T:..53_:[..G]G-----C[..C]:..61_:T<.... (0.002) | 13 (0.005) ....>T:..54_:[..U]U-**--A[..A]:..58_:T<.... (0.007) | 14 (0.008) ....>T:..55_:[..U]U-**+-G[..G]:..18_:T<.... (0.011) x 15 (0.011) ....>T:..36_:[..U]U-**+-U[..U]:..33_:T<.... (0.005) | 16 (0.013) ....>T:..38_:[..A]A-**--C[..C]:..32_:T<.... (0.003) | 17 (0.012) ....>T:..39_:[..G]G-----C[..C]:..31_:T<.... (0.007) | 18 (0.004) ....>T:..40_:[..G]G-----C[..C]:..30_:T<.... (0.004) | 19 (0.004) ....>T:..41_:[..G]G-----C[..C]:..29_:T<.... (0.009) | 20 (0.007) ....>T:..42_:[..U]U-----A[..A]:..28_:T<.... (0.008) | 21 (0.007) ....>T:..43_:[..G]G-----C[..C]:..27_:T<.... (0.005) | 22 (0.009) ....>T:..44_:[..A]A-**--G[..G]:..26_:T<.... (0.011) | 23 (0.005) ....>T:..10_:[..G]G-----C[..C]:..25_:T<.... (0.005) | 24 (0.005) ....>T:..11_:[..C]C-----G[..G]:..24_:T<.... (0.010) | 25 (0.004) ....>T:..12_:[..U]U-----A[..A]:..23_:T<.... (0.008) | 26 (0.006) ....>T:..13_:[..C]C-----G[..G]:..22_:T<.... (0.004) | 27 (0.003) ....>T:..14_:[..A]A-**--U[..U]:...8_:T<.... (0.007) | 28 (0.006) ....>T:..15_:[..G]G-**+-C[..C]:..48_:T<.... (0.008) x 29 (0.005) ....>T:..16_:[..G]G-**--U[..U]:..17_:T<.... (0.003) + 30 (0.008) ....>T:..19_:[..G]G-----C[..C]:..56_:T<.... (0.004) + Note: This structure contains 10[8] non-Watson-Crick base-pairs. **************************************************************************** Detailed H-bond information: atom-name pair and length [ O N] 1 G-----C [3] O6 - N4 2.96 N1 - N3 2.96 N2 - O2 2.86 2 G-----C [3] O6 - N4 3.14 N1 - N3 2.96 N2 - O2 2.66 3 G-----C [3] O6 - N4 2.98 N1 - N3 2.95 N2 - O2 2.82 4 C-----G [3] O2 - N2 2.70 N3 - N1 2.99 N4 - O6 3.14 5 U-*---G [2] O2 - N1 2.74 N3 - O6 2.91 6 U-----A [2] N3 - N1 2.94 O4 - N6 3.14 7 G-----C [3] O6 - N4 2.56 N1 - N3 2.76 N2 - O2 2.88 8 G-*---U [2] O6 - N3 2.94 N1 - O2 2.69 9 G-----C [2] N1 - N3 3.41 N2 - O2 3.01 10 U-----A [2] N3 - N1 2.71 O4 - N6 2.80 11 G-----C [3] O6 - N4 2.83 N1 - N3 2.81 N2 - O2 2.70 12 G-----C [3] O6 - N4 2.84 N1 - N3 2.83 N2 - O2 2.67 13 U-**--A [2] O2 - N6 2.52 N3 - N7 3.10 14 U-**+-G [1] O2 - N1 2.91 15 U-**+-U [2] N3 - O2 3.03 O4 * O4' 3.09 16 A-**--C [1] N6 - O2 2.92 17 G-----C [3] O6 - N4 2.87 N1 - N3 2.88 N2 - O2 2.76 18 G-----C [3] O6 - N4 3.26 N1 - N3 3.19 N2 - O2 3.00 19 G-----C [3] O6 - N4 3.20 N1 - N3 3.09 N2 - O2 2.95 20 U-----A [2] N3 - N1 2.74 O4 - N6 2.85 21 G-----C [3] O6 - N4 3.11 N1 - N3 2.92 N2 - O2 2.76 22 A-**--G [2] N6 - O6 2.71 N1 - N1 2.79 23 G-----C [3] O6 - N4 2.80 N1 - N3 2.83 N2 - O2 2.79 24 C-----G [3] O2 - N2 2.83 N3 - N1 2.92 N4 - O6 2.90 25 U-----A [2] N3 - N1 2.97 O4 - N6 2.93 26 C-----G [3] O2 - N2 2.79 N3 - N1 2.98 N4 - O6 3.03 27 A-**--U [2] N7 - N3 3.08 N6 - O2 2.82 28 G-**+-C [2] N1 - O2 2.53 N2 - N3 2.64 29 G-**--U [2] N7 - N3 3.69 O6 * O4 2.66 30 G-----C [3] O6 - N4 2.65 N1 - N3 2.67 N2 - O2 2.57