Operon IdGene Type COGgene PosLeft postRight Strand Function 1 dnaA CDS COG0593 410 1750 + [L] ATPase involved in DNA replication initiation dnaN CDS COG0592 1939 3075 + [L] DNA polymerase sliding clamp subunit (PCNA 2 rlbA CDS COG2501 3206 3421 + [S] Uncharacterized conserved protein recF CDS COG1195 3437 4549 + [L] Recombinational DNA repair ATPase (RecF pathway) remB CDS ROG0244 4567 4812 + NA gyrB CDS COG0187 4867 6783 + [L] Type IIA topoisomerase (DNA gyrase/topo II, gyrA CDS COG0188 6994 9459 + [L] Type IIA topoisomerase (DNA gyrase/topo II, 3 rrnO-16S rRNA NA 9810 11364 + NA trnO-Ile tRNA NA 11464 11540 + NA trnO-Ala tRNA NA 11552 11627 + NA rrnO-23S rRNA NA 11709 14636 + NA rrnO-5S rRNA NA 14692 14810 + NA 4 yaaC CDS ROG3267 14847 15794 - NA 5 guaB CDS COG0516 15915 17381 + [F] IMP dehydrogenase/GMP reductase 6 dacA CDS COG1686 17534 18865 + [M] D-alanyl-D-alanine carboxypeptidase 7 pdxS CDS COG0214 19062 19946 + [H] Pyridoxine biosynthesis enzyme pdxT CDS COG0311 19968 20558 + [H] Predicted glutamine amidotransferase involved in pyridoxine 8 serS CDS COG0172 20880 22157 + [J] Seryl-tRNA synthetase 9 trnSL-Ser1 tRNA NA 22292 22384 + NA 10 dck CDS COG1428 22496 23149 - [F] Deoxynucleoside kinases dgk CDS COG1428 23146 23769 - [F] Deoxynucleoside kinases 11 sleL CDS COG3858 23868 25151 - [R] Predicted glycosyl hydrolase 12 yaaI CDS COG1335 25221 25766 - [Q] Amidases related to nicotinamidase 13 tadA CDS COG0590 25852 26337 + [FJ] Cytosine/adenosine deaminases 14 dnaX CDS COG2812 26814 28505 + [L] DNA polymerase III, gamma/tau subunits ebfC CDS COG0718 28529 28852 + [S] Uncharacterized protein conserved in bacteria recR CDS COG0353 28867 29463 + [L] Recombinational DNA repair protein (RecF pathway) yaaL CDS ROG4148 29481 29705 + NA 15 bofA CDS ROG3451 29772 30035 + NA 16 rrnA-16S rRNA NA 30279 31832 + NA trnA-Ile tRNA NA 31932 32008 + NA trnA-Ala tRNA NA 32020 32095 + NA rrnA-23S rRNA NA 32177 35103 + NA rrnA-5S rRNA NA 35237 35355 + NA 17 csfB CDS ROG2177 35531 35725 + NA 18 xpaC CDS COG4915 35845 36459 + [R] 5-bromo-4-chloroindolyl phosphate hydrolysis protein yaaN CDS COG3853 36478 37638 + [P] Uncharacterized protein involved in tellurite resistance 19 yaaO CDS COG1982 37720 39162 + [E] Arginine/lysine/ornithine decarboxylases tmk CDS COG0125 39159 39797 + [F] Thymidylate kinase darA CDS COG3870 39871 40200 + [S] Uncharacterized protein conserved in bacteria yaaR CDS COG1728 40213 40653 + [S] Uncharacterized protein conserved in bacteria holB CDS COG2812 40665 41654 + [L] DNA polymerase III, gamma/tau subunits ricT CDS COG1774 41657 42484 + [S] Uncharacterized homolog of PSP1 dnaH CDS COG4467 42499 42858 + [S] Uncharacterized protein conserved in bacteria trmNF CDS COG4123 42917 43660 + [R] Predicted O-methyltransferase yazA CDS COG2827 43647 43946 + [L] Predicted endonuclease containing a URI domain rsmI CDS COG0313 43921 44799 + [R] Predicted methyltransferases 20 abrB CDS COG2002 44848 45138 - [K] Regulators of stationary/sporulation gene expression 21 metS CDS COG0143 45633 47627 + [J] Methionyl-tRNA synthetase dayD CDS COG0084 47706 48473 + [L] Mg-dependent DNase 22 yabE CDS COG3583 48629 49942 + [S] Uncharacterized protein conserved in bacteria rnmV CDS COG1658 50087 50647 + [L] Small primase-like proteins (Toprim domain) rsmA CDS COG0030 50640 51518 + [J] Dimethyladenosine transferase (rRNA methylation) 23 prtG CDS ROG0159 51680 52552 + NA 24 veg CDS COG4466 52763 53023 + [S] Uncharacterized protein conserved in bacteria 25 sspF CDS ROG0701 53183 53368 + NA 26 ispE CDS COG1947 53516 54385 + [I] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase purR CDS COG0503 54441 55298 + [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins ridA CDS COG0251 55295 55672 + [J] Putative translation initiation inhibitor, yjgF family 27 spoVG CDS COG2088 55866 56159 + [M] Uncharacterized protein, involved in the regulation 28 glmU CDS COG1207 56352 57722 + [M] N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch prs CDS COG0462 57745 58698 + [FE] Phosphoribosylpyrophosphate synthetase ctc CDS COG1825 58783 59397 + [J] Ribosomal protein L25 (general stress protein pth CDS COG0193 59504 60070 + [J] Peptidyl-tRNA hydrolase fin CDS ROG5274 60130 60360 + NA 29 mfd CDS COG1197 60430 63963 + [LK] Transcription-repair coupling factor (superfamily II helicase) 30 spoVT CDS COG2002 64099 64635 + [K] Regulators of stationary/sporulation gene expression 31 yabM CDS COG2244 64817 66415 + [R] Membrane protein involved in the export yabN CDS COG3956 66405 67874 + [R] Protein containing tetrapyrrole methyltransferase domain and hslR CDS COG1188 67877 68137 + [J] Ribosome-associated heat shock protein implicated in spcP CDS ROG0097 68216 68518 + NA spcQ CDS ROG1117 68515 69150 + NA divIC CDS COG2919 69168 69545 + [D] Septum formation initiator yabR CDS COG1098 69626 70012 + [J] Predicted RNA binding protein (contains ribosomal 32 trnSL-Met1 tRNA NA 70181 70257 + NA trnSL-Glu1 tRNA NA 70267 70338 + NA 33 spoIIE CDS COG2208 70538 73021 + [TK] Serine phosphatase RsbU, regulator of sigma 34 yabS CDS COG2304 73106 73843 + [R] Uncharacterized protein containing a von Willebrand prkT CDS COG2112 73809 74825 + [T] Predicted Ser/Thr protein kinase 35 tilS CDS COG0037 74929 76347 + [D] Predicted ATPase of the PP-loop superfamily hprT CDS COG0634 76344 76886 + [F] Hypoxanthine-guanine phosphoribosyltransferase ftsH CDS COG0465 76984 78897 + [O] ATP-dependent Zn proteases 36 coaX CDS COG1521 79092 79868 + [K] Putative transcriptional regulator, homolog of Bvg hslO CDS COG1281 79880 80755 + [O] Disulfide bond chaperones of the HSP33 yacD CDS COG0760 80802 81695 + [O] Parvulin-like peptidyl-prolyl isomerase cysK CDS COG0031 81771 82697 + [E] Cysteine synthase 37 pabB CDS COG0147 82864 84276 + [EH] Anthranilate/para-aminobenzoate synthases component I pabA CDS COG0512 84290 84874 + [EH] Anthranilate/para-aminobenzoate synthases component II pabC CDS COG0115 84874 85755 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase folP CDS COG0294 85737 86594 + [H] Dihydropteroate synthase and related enzymes folB CDS COG1539 86587 86949 + [H] Dihydroneopterin aldolase folK CDS COG0801 86946 87449 + [H] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase yazB CDS COG1396 87401 87610 + [K] Predicted transcriptional regulators dusB CDS COG0042 87634 88635 + [J] tRNA-dihydrouridine synthase lysS CDS COG1190 88727 90226 + [J] Lysyl-tRNA synthetase (class II) 38 rrnJ-16S rRNA NA 90536 92089 + NA rrnJ-23S rRNA NA 92254 95181 + NA rrnJ-5S rRNA NA 95237 95354 + NA trnJ-Val tRNA NA 95375 95450 + NA trnJ-Thr tRNA NA 95455 95530 + NA trnJ-Lys tRNA NA 95567 95642 + NA trnJ-Leu1 tRNA NA 95649 95731 + NA trnJ-Gly tRNA NA 95772 95846 + NA trnJ-Leu2 tRNA NA 95861 95946 + NA trnJ-Arg tRNA NA 95956 96032 + NA trnJ-Pro tRNA NA 96060 96136 + NA trnJ-Ala tRNA NA 96146 96221 + NA rrnW-16S rRNA NA 96392 97945 + NA rrnW-23S rRNA NA 98110 101037 + NA rrnW-5S rRNA NA 101093 101211 + NA 39 ctsR CDS COG4463 101449 101913 + [K] Transcriptional repressor of class III stress mcsA CDS COG3880 101927 102484 + [S] Uncharacterized protein with conserved CXXC pairs mcsB CDS COG3869 102484 103575 + [E] Arginine kinase clpC CDS COG0542 103572 106004 + [O] ATPases with chaperone activity, ATP-binding subunit radA CDS COG1066 106096 107472 + [O] Predicted ATP-dependent serine protease disA CDS COG1623 107476 108558 + [R] Predicted nucleic-acid-binding protein (contains the HHH yacL CDS COG4956 108674 109774 + [R] Integral membrane protein (PIN domain superfamily) ispD CDS COG1211 109789 110487 + [I] 4-diphosphocytidyl-2-methyl-D-erithritol synthase ispF CDS COG0245 110480 110956 + [I] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase gltX CDS COG0008 111047 112498 + [J] Glutamyl- and glutaminyl-tRNA synthetases 40 cysE CDS COG1045 112800 113453 + [E] Serine acetyltransferase cysS CDS COG0215 113450 114850 + [J] Cysteinyl-tRNA synthetase mrnC CDS COG1939 114854 115285 + [S] Uncharacterized protein conserved in bacteria rlmB CDS COG0566 115269 116018 + [J] rRNA methylases raeA CDS COG3688 116025 116537 + [R] Predicted RNA-binding protein containing a PIN 41 sigH CDS ROG3055 116600 117256 + NA 42 rpmGB CDS COG0267 117349 117498 + [J] Ribosomal protein L33 secE CDS COG0690 117532 117711 + [U] Preprotein translocase subunit SecE nusG CDS COG0250 117890 118423 + [K] Transcription antiterminator rplK CDS COG0080 118591 119016 + [J] Ribosomal protein L11 rplA CDS COG0081 119111 119809 + [J] Ribosomal protein L1 rplJ CDS COG0244 120061 120561 + [J] Ribosomal protein L10 rplL CDS COG0222 120607 120978 + [J] Ribosomal protein L7/L12 rlmG CDS COG2813 121068 121673 + [J] 16S RNA G1207 methylase RsmC 43 rpoB CDS COG0085 121919 125500 + [K] DNA-directed RNA polymerase, beta subunit/140 kD rpoC CDS COG0086 125562 129161 + [K] DNA-directed RNA polymerase, beta' subunit/160 kD rulS CDS COG1358 129340 129588 + [J] Ribosomal protein HS6-type (S12/L30/L7a) rpsL CDS COG0048 129702 130118 + [J] Ribosomal protein S12 rpsG CDS COG0049 130160 130630 + [J] Ribosomal protein S7 fusA CDS COG0480 130684 132762 + [J] Translation elongation factors (GTPases) tufA CDS COG0050 132882 134072 + [J] GTPases - translation elongation factors ybaC CDS COG0596 134171 135127 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 44 rpsJ CDS COG0051 135364 135672 + [J] Ribosomal protein S10 rplC CDS COG0087 135712 136341 + [J] Ribosomal protein L3 rplD CDS COG0088 136369 136992 + [J] Ribosomal protein L4 rplW CDS COG0089 136992 137279 + [J] Ribosomal protein L23 rplB CDS COG0090 137311 138144 + [J] Ribosomal protein L2 rpsS CDS COG0185 138202 138480 + [J] Ribosomal protein S19 rplV CDS COG0091 138497 138838 + [J] Ribosomal protein L22 rpsC CDS COG0092 138842 139498 + [J] Ribosomal protein S3 rplP CDS COG0197 139500 139934 + [J] Ribosomal protein L16/L10E rpmC CDS COG0255 139924 140124 + [J] Ribosomal protein L29 rpsQ CDS COG0186 140147 140410 + [J] Ribosomal protein S17 rplNA CDS COG0093 140451 140819 + [J] Ribosomal protein L14 rplX CDS COG0198 140857 141168 + [J] Ribosomal protein L24 rplE CDS COG0094 141195 141734 + [J] Ribosomal protein L5 rpsNA CDS COG0199 141757 141942 + [J] Ribosomal protein S14 rpsH CDS COG0096 141974 142372 + [J] Ribosomal protein S8 rplF CDS COG0097 142402 142941 + [J] Ribosomal protein L6P/L9E rplR CDS COG0256 142974 143336 + [J] Ribosomal protein L18 rpsE CDS COG0098 143361 143861 + [J] Ribosomal protein S5 rpmD CDS COG1841 143875 144054 + [J] Ribosomal protein L30/L7E rplO CDS COG0200 144085 144525 + [J] Ribosomal protein L15 secY CDS COG0201 144527 145822 + [U] Preprotein translocase subunit SecY adk CDS COG0563 145877 146530 + [F] Adenylate kinase and related kinases mapA CDS COG0024 146527 147273 + [J] Methionine aminopeptidase ybzG CDS NA 147312 147536 + NA infA CDS COG0361 147585 147803 + [J] Translation initiation factor 1 (IF-1) rpmJ CDS COG0257 147837 147950 + [J] Ribosomal protein L36 rpsM CDS COG0099 147973 148338 + [J] Ribosomal protein S13 rpsK CDS COG0100 148359 148754 + [J] Ribosomal protein S11 rpoA CDS COG0202 148931 149875 + [K] DNA-directed RNA polymerase, alpha subunit/40 kD rplQ CDS COG0203 149953 150315 + [J] Ribosomal protein L17 45 ecfA CDS COG1122 150443 151288 + [P] ABC-type cobalt transport system, ATPase component ecfAB CDS COG1122 151303 152133 + [P] ABC-type cobalt transport system, ATPase component ecfT CDS COG0619 152130 152927 + [P] ABC-type cobalt transport system, permease component truA CDS COG0101 152937 153680 + [J] Pseudouridylate synthase rplM CDS COG0102 153842 154279 + [J] Ribosomal protein L13 rpsI CDS COG0103 154300 154692 + [J] Ribosomal protein S9 46 ybaJ CDS COG0500 155156 155923 + [QR] SAM-dependent methyltransferases 47 ybaK CDS ROG4215 156109 156552 + NA cwlD CDS COG0860 156612 157325 + [M] N-acetylmuramoyl-L-alanine amidase 48 salA CDS COG0489 157421 158479 + [D] ATPases involved in chromosome partitioning 49 gerD CDS ROG3823 158515 159072 - NA 50 kbaA CDS ROG3563 159182 159778 + NA 51 pdaB CDS COG0726 159779 160543 - [G] Predicted xylanase/chitin deacetylase 52 rrnI-16S rRNA NA 160893 162445 + NA rrnI-23S rRNA NA 162610 165535 + NA rrnI-5S rRNA NA 165591 165707 + NA trnI-Asn tRNA NA 165754 165825 + NA trnI-Thr tRNA NA 165830 165902 + NA trnI-Gly tRNA NA 165959 166033 + NA trnI-Arg tRNA NA 166064 166140 + NA trnI-Pro tRNA NA 166168 166244 + NA trnI-Ala tRNA NA 166253 166328 + NA rrnH-16S rRNA NA 166500 168053 + NA rrnH-23S rRNA NA 168218 171141 + NA rrnH-5S rRNA NA 171197 171314 + NA rrnG-16S rRNA NA 171498 173049 + NA rrnG-23S rRNA NA 173214 176141 + NA rrnG-5S rRNA NA 176197 176315 + NA 53 ybaR CDS COG0659 177083 178519 + [P] Sulfate permease and related transporters (MFS 54 ybaS CDS COG0385 178665 179585 + [R] Predicted Na+-dependent transporter 55 eesA CDS COG2819 179595 180347 - [R] Predicted hydrolase of the alpha/beta superfamily feuC CDS COG0609 180344 181354 - [P] ABC-type Fe3+-siderophore transport system, permease component feuB CDS COG0609 181347 182351 - [P] ABC-type Fe3+-siderophore transport system, permease component feuA CDS COG0614 182370 183323 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component btr CDS COG2207 183414 185003 - [K] AraC-type DNA-binding domain-containing proteins 56 ybbC CDS COG3876 185194 186438 - [S] Uncharacterized protein conserved in bacteria nagZ CDS COG1472 186452 188380 - [G] Beta-glucosidase-related glycosidases amiE CDS COG1680 188408 189733 - [V] Beta-lactamase class C and other penicillin murP CDS COG1264 189790 191157 - [G] Phosphotransferase system IIB components murR CDS COG1737 191183 192034 - [K] Transcriptional regulators murQ CDS COG2103 192051 192965 - [R] Predicted sugar phosphate isomerase 57 ybbJ CDS NA 193075 193557 - NA ybbK CDS COG1683 193570 194025 - [S] Uncharacterized conserved protein 58 trnSL-Glu2 tRNA NA 194205 194279 + NA trnSL-Val1 tRNA NA 194283 194358 + NA trnSL-Thr1 tRNA NA 194363 194435 + NA trnSL-Tyr1 tRNA NA 194458 194542 + NA trnSL-Gln2 tRNA NA 194547 194621 + NA 59 sigW CDS COG1595 194849 195412 + [K] DNA-directed RNA polymerase specialized sigma subunit, rsiW CDS COG5662 195426 196052 + [K] Predicted transmembrane transcriptional regulator (anti-sigma factor) 60 cdaA CDS COG1624 196213 197034 + [S] Uncharacterized conserved protein cdaR CDS COG4856 197027 198478 + [S] Uncharacterized protein conserved in bacteria glmM CDS COG1109 198497 199843 + [G] Phosphomannomutase 61 glmS CDS COG0449 200277 202079 + [M] Glucosamine 6-phosphate synthetase, contains amidotransferase and ybbU CDS NA 202126 202266 + NA 62 alkA CDS COG0122 202547 203458 - [L] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase 63 adaA CDS COG2169 203729 204364 + [F] Adenosine deaminase adaB CDS COG0350 204351 204890 + [L] Methylated DNA-protein cysteine methyltransferase 64 ndhF CDS COG1009 205409 206926 + [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit ybcC CDS COG3002 206941 209556 + [S] Uncharacterized protein conserved in bacteria 65 ybcF CDS NA 209633 210160 + NA 66 ybcH CDS NA 210224 210514 + NA ybcI CDS COG5609 210572 210946 + [S] Uncharacterized conserved protein 67 ybzH CDS COG0640 211429 211731 + [K] Predicted transcriptional regulators ybcL CDS COG2814 211859 213031 + [G] Arabinose efflux permease 68 ybcM CDS NA 213155 213469 + NA 69 skfA CDS NA 213941 214108 + NA 70 skfB CDS COG0535 214175 215407 + [R] Predicted Fe-S oxidoreductases skfC CDS COG1266 215404 216894 + [R] Predicted metal-dependent membrane protease skfE CDS COG4555 216913 217632 + [CP] ABC-type Na+ transport system, ATPase component 71 skfF CDS NA 217697 219040 + NA skfG CDS COG1413 219087 219602 + [C] FOG: HEAT repeat skfH CDS ROG2845 219607 220032 + NA 72 ybdG CDS ROG4598 220279 221256 + NA ybdJ CDS COG0745 221258 221929 + [TK] Response regulators consisting of a CheY-like ybdK CDS COG2972 221950 222912 + [T] Predicted signal transduction protein with a ybzI CDS NA 222971 223234 + NA 73 ybdM CDS COG0515 223219 223989 - [RTKL] Serine/threonine protein kinase 74 ybdN CDS ROG6236 224075 224932 - NA 75 ybdO CDS NA 225064 226248 + NA 76 ybxG CDS COG1113 226566 227954 + [E] Gamma-aminobutyrate permease and related permeases 77 csgA CDS NA 228066 228314 + NA ybxH CDS NA 228331 228522 + NA 78 ybxI CDS COG2602 228549 229352 - [V] Beta-lactamase class D 79 cypC CDS COG2124 229525 230778 + [Q] Cytochrome P450 80 ybyB CDS NA 230819 231079 - NA 81 ybeC CDS COG0531 231348 232967 + [E] Amino acid transporters 82 glpQA CDS COG0584 233014 233895 - [C] Glycerophosphoryl diester phosphodiesterase glpT CDS COG2271 233994 235328 - [G] Sugar phosphate permease 83 ybeF CDS COG3965 235625 235873 + [P] Predicted Co/Zn/Cd cation transporters 84 ybfA CDS COG0454 235965 236882 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases ybfB CDS COG0477 236879 238129 + [GEPR] Permeases of the major facilitator superfamily 85 ybfEc CDS NA 238164 238448 - NA ybfEn CDS NA 238354 238476 - NA 86 ybfF CDS NA 238644 239555 - NA 87 ybfG CDS COG3409 239644 241842 - [M] Putative peptidoglycan-binding domain-containing protein 88 ybfH CDS COG0697 241917 242837 - [GER] Permeases of the drug/metabolite transporter (DMT) ybfI CDS COG2207 242834 243661 - [K] AraC-type DNA-binding domain-containing proteins 89 purT CDS COG0027 243892 245046 + [F] Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) 90 mpr CDS COG3591 245190 246131 + [E] V8-like Glu-specific endopeptidase ybfJ CDS ROG4342 246094 246492 + NA 91 cesB CDS COG0596 246658 247548 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 92 pssA CDS COG1183 247744 248277 + [I] Phosphatidylserine synthase ybfM CDS COG0586 248268 248756 + [S] Uncharacterized membrane-associated protein psd CDS COG0688 248749 249540 + [I] Phosphatidylserine decarboxylase ybfN CDS NA 249595 249873 + NA 93 ybfO CDS COG2312 249979 251319 + [R] Erythromycin esterase homolog 94 ybfP CDS COG2207 251427 252314 + [K] AraC-type DNA-binding domain-containing proteins 95 ybfQ CDS COG1054 252514 253482 + [R] Predicted sulfurtransferase 96 gltP CDS COG1301 253518 254762 - [C] Na+/H+-dicarboxylate symporters 97 gamP CDS COG1263 254907 256802 - [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific gamA CDS COG0363 256823 257572 - [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 98 gamR CDS COG2188 257791 258498 + [K] Transcriptional regulators ybgB CDS COG5658 258532 258807 + [S] Predicted integral membrane protein 99 ilvE CDS COG0115 259016 260086 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 100 ybgF CDS COG0833 260123 261535 - [E] Amino acid transporters ybgG CDS COG2040 261656 262603 - [E] Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) 101 glnT CDS COG1115 262732 264168 - [E] Na+/alanine symporter glsA CDS COG2066 264191 265174 - [E] Glutaminase 102 glnJ CDS COG3290 265476 266708 + [T] Signal transduction histidine kinase regulating citrate/malate glnL CDS COG2204 266719 267663 + [T] Response regulator containing CheY-like receiver, AAA-type 103 kdgD CDS COG0329 267890 268816 + [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase gucD CDS COG1012 268846 270312 + [C] NAD-dependent aldehyde dehydrogenases gudP CDS COG2271 270396 271763 + [G] Sugar phosphate permease gudD CDS COG4948 271800 273167 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of garR CDS COG2186 273237 273938 + [K] Transcriptional regulators garD CDS COG2721 274029 275561 + [G] Altronate dehydratase 104 ycbJ CDS ROG4568 275838 276758 + NA 105 rtpA CDS COG1530 277160 277321 + [J] Ribonucleases G and E ycbK CDS COG0697 277342 278280 + [GER] Permeases of the drug/metabolite transporter (DMT) ycbL CDS COG0745 278377 279057 + [TK] Response regulators consisting of a CheY-like ycbM CDS COG2205 279059 279994 + [T] Osmosensitive K+ channel histidine kinase 106 ycbN CDS COG1131 280086 281009 + [V] ABC-type multidrug transport system, ATPase component ycbO CDS COG1277 281028 281714 + [R] ABC-type transport system involved in multi-copper 107 cds-SOX90539.1 CDS NA 281675 281809 - NA ycbP CDS ROG2806 281769 282155 - NA 108 cwlJ CDS COG3773 282469 282897 + [M] Cell wall hydrolyses involved in spore 109 ycbR CDS NA 283003 283734 + NA 110 yczK CDS NA 283816 283992 + NA phoD CDS COG3540 284011 285762 + [P] Phosphodiesterase/alkaline phosphatase D tatAD CDS COG1826 285775 285987 + [U] Sec-independent protein secretion pathway components tatCD CDS COG0805 286048 286776 + [U] Sec-independent protein secretion pathway component TatC 111 pcp CDS COG2039 286773 287420 - [O] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 112 ycbU CDS COG3844 287499 288611 + [E] Kynureninase 113 lmrB CDS NA 288653 290092 - NA lmrA CDS COG1309 290132 290698 - [K] Transcriptional regulator 114 ansZ CDS COG0252 290915 292042 + [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 115 estA CDS COG1075 3454221 3454961 - [R] Predicted acetyltransferases and hydrolases with the 116 yczC CDS COG1714 292881 293264 - [S] Predicted membrane protein/domain 117 yccF CDS COG3318 293499 294575 + [R] Predicted metal-binding protein related to the 118 natK CDS COG3290 294615 295571 - [T] Signal transduction histidine kinase regulating citrate/malate natR CDS COG3279 295584 296285 - [KT] Response regulator of the LytR/AlgR family 119 natA CDS COG4555 296429 297169 + [CP] ABC-type Na+ transport system, ATPase component natB CDS COG1668 297170 298330 + [CP] ABC-type Na+ efflux pump, permease component 120 yccK CDS COG0667 298466 299398 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 121 ycdA CDS ROG1691 299438 300502 - NA cds-SOX90540.1 CDS NA 300525 300656 - NA 122 ycdB CDS ROG2201 300830 302248 + NA 123 ycdC CDS NA 302435 303796 + NA 124 cwlK CDS ROG4884 303804 304307 - NA 125 rapJ CDS COG0457 304430 305551 + [R] FOG: TPR repeat ycdF CDS COG1028 305658 306434 + [IQR] Dehydrogenases with different specificities (related to ycdG CDS COG0366 306459 308144 + [G] Glycosidases 126 znuA CDS COG0803 308332 309291 + [P] ABC-type metal ion transport system, periplasmic znuC CDS COG1121 309347 310042 + [P] ABC-type Mn/Zn transport systems, ATPase component znuB CDS COG1108 310000 310842 + [P] ABC-type Mn2+/Zn2+ transport systems, permease components 127 yceB CDS COG2141 310880 311875 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 128 yceC CDS COG2310 312159 312758 + [T] Uncharacterized proteins involved in stress response, yceD CDS COG2310 312780 313361 + [T] Uncharacterized proteins involved in stress response, yceE CDS COG2310 313396 313974 + [T] Uncharacterized proteins involved in stress response, yceF CDS COG0861 314025 314798 + [P] Membrane protein TerC, possibly involved in 129 yceG CDS ROG3539 314883 316496 + NA yceH CDS COG3853 316512 317603 + [P] Uncharacterized protein involved in tellurite resistance 130 niaP CDS COG0477 317725 318927 + [GEPR] Permeases of the major facilitator superfamily 131 yceJ CDS COG2814 319180 320352 - [G] Arabinose efflux permease yceK CDS COG0640 320421 320723 - [K] Predicted transcriptional regulators 132 opuAA CDS COG4175 321013 322269 + [E] ABC-type proline/glycine betaine transport system, ATPase opuAB CDS COG4176 322271 323119 + [E] ABC-type proline/glycine betaine transport system, permease opuAC CDS COG2113 323119 324000 + [E] ABC-type proline/glycine betaine transport systems, periplasmic 133 amhX CDS COG1473 324038 325189 - [R] Metal-dependent amidase/aminoacylase/carboxypeptidase 134 ycgA CDS COG1288 325339 326772 + [S] Predicted membrane protein 135 ycgB CDS NA 326888 327469 + NA 136 amyE CDS COG0366 327618 329597 + [G] Glycosidases 137 lctE CDS COG0039 329774 330739 + [C] Malate/lactate dehydrogenases lctP CDS COG1620 330771 332396 + [C] L-lactate permease 138 mdr CDS COG0477 332441 333979 - [GEPR] Permeases of the major facilitator superfamily 139 ycgE CDS COG1846 334092 334556 + [K] Transcriptional regulators 140 ycgF CDS ROG6837 334630 335259 + NA 141 ycgG CDS COG3403 335329 336090 + [S] Uncharacterized conserved protein 142 ycgH CDS COG0531 336092 337432 - [E] Amino acid transporters 143 ycgI CDS COG3665 337562 338158 + [S] Uncharacterized conserved protein 144 nadE CDS COG0171 338288 339106 + [H] NAD synthase 145 tmrB CDS ROG2342 339156 339749 - NA 146 aroK CDS COG0703 340025 340585 + [E] Shikimate kinase 147 ycgJ CDS COG0500 340613 341374 - [QR] SAM-dependent methyltransferases 148 ycgK CDS COG0583 341492 342466 + [K] Transcriptional regulator 149 cah CDS COG3458 342538 343494 + [Q] Acetyl esterase (deacetylase) 150 ycgL CDS COG3541 343578 344360 + [R] Predicted nucleotidyltransferase 151 putB CDS COG0506 344551 345462 + [E] Proline dehydrogenase putC CDS COG1012 345479 347026 + [C] NAD-dependent aldehyde dehydrogenases putP CDS COG0591 347150 348571 + [ER] Na+/proline symporter 152 putR CDS COG2508 348724 349959 + [TQ] Regulator of polyketide synthase expression 153 ycgQ CDS COG3689 349996 350853 - [S] Predicted membrane protein ycgR CDS COG0701 350858 351742 - [R] Predicted permeases 154 ycgS CDS COG0596 351842 352696 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 155 ffoR CDS COG0492 352858 353868 + [O] Thioredoxin reductase 156 nasF CDS COG0007 353900 355351 - [H] Uroporphyrinogen-III methylase nasE CDS COG2146 355412 355732 - [PR] Ferredoxin subunits of nitrite reductase and nasD CDS COG1251 355764 358181 - [C] NAD(P)H-nitrite reductase nasC CDS COG0243 358303 360435 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing nasB CDS COG1251 360442 362757 - [C] NAD(P)H-nitrite reductase 157 nasA CDS COG2223 362937 364142 + [P] Nitrate/nitrite transporter 158 folEB CDS COG1469 364259 365173 + [S] Uncharacterized conserved protein yciB CDS COG1376 365170 365754 + [S] Uncharacterized protein conserved in bacteria 159 yczL CDS NA 365850 366035 + NA zinU CDS COG0523 366063 367256 + [R] Putative GTPases (G3E family) 160 yckA CDS COG0765 367305 367985 - [E] ABC-type amino acid transport system, permease yckB CDS COG0834 367995 368858 - [ET] ABC-type amino acid transport/signal transduction systems, 161 cds-SOX90541.1 CDS NA 369020 369217 + NA yckC CDS COG1714 369236 369691 + [S] Predicted membrane protein/domain 162 yckD CDS ROG4854 369773 370105 + NA 163 bglC CDS COG2723 370259 371692 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase 164 nin CDS NA 371729 372127 - NA nucA CDS NA 372154 372603 - NA 165 tlpC CDS COG0840 372771 374492 - [NT] Methyl-accepting chemotaxis protein 166 hxlB CDS COG0794 374603 375160 - [M] Predicted sugar phosphate isomerase involved in hxlA CDS COG0269 375166 375798 - [G] 3-hexulose-6-phosphate synthase and related proteins 167 hxlR CDS COG1733 376032 376394 + [K] Predicted transcriptional regulators 168 srfAA CDS COG1020 376968 387731 + [Q] Non-ribosomal peptide synthetase modules and related srfAB CDS COG1020 387744 398495 + [Q] Non-ribosomal peptide synthetase modules and related 169 comS CDS NA 390880 391020 + NA 170 srfAC CDS COG1020 398532 402359 + [Q] Non-ribosomal peptide synthetase modules and related srfAD CDS COG3208 402388 403116 + [Q] Predicted thioesterase involved in non-ribosomal peptide 171 srfT CDS COG2271 403217 404443 + [G] Sugar phosphate permease 172 ycxB CDS NA 404458 405015 - NA ycxC CDS COG0697 405069 406007 - [GER] Permeases of the drug/metabolite transporter (DMT) 173 ycxD CDS COG1167 406131 407465 + [KE] Transcriptional regulators containing a DNA-binding HTH 174 sfpAc CDS COG2091 407460 407627 - [H] Phosphopantetheinyl transferase sfpAn CDS COG2091 407638 408135 - [H] Phosphopantetheinyl transferase yczE CDS COG2364 408240 408887 - [S] Predicted membrane protein 175 tcyC CDS COG1126 409208 409951 - [E] ABC-type polar amino acid transport system, tcyB CDS COG0765 409965 410669 - [E] ABC-type amino acid transport system, permease tcyA CDS COG0834 410656 411462 - [ET] ABC-type amino acid transport/signal transduction systems, bsdA CDS COG0583 411578 412450 - [K] Transcriptional regulator 176 ubiX CDS COG0163 412540 413154 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase bsdC CDS COG0043 413157 414578 + [H] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases bsdD CDS ROG1118 414595 414822 + NA yclD CDS ROG6291 414819 415283 + NA 177 yclE CDS COG0596 415350 416195 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 178 dtpT CDS COG3104 416235 417713 - [E] Dipeptide/tripeptide permease 179 yclG CDS COG5434 417993 419747 + [M] Endopolygalacturonase 180 yczF CDS ROG5945 419763 419984 - NA 181 gerKA CDS ROG0098 420110 421744 + NA gerKC CDS ROG0172 421734 422957 + NA gerKB CDS ROG0243 422982 424103 + NA 182 yclH CDS COG4181 424208 424888 - [Q] Predicted ABC-type transport system involved in yclI CDS ROG4283 424904 426364 - NA 183 yclJ CDS COG0745 426577 427260 + [TK] Response regulators consisting of a CheY-like yclK CDS COG0642 427247 428668 + [T] Signal transduction histidine kinase rapC CDS COG0457 428831 429979 + [R] FOG: TPR repeat phrC CDS COG5505 429963 430085 + [S] Predicted integral membrane protein 184 yczM CDS NA 430185 430274 - NA 185 yczN CDS NA 430356 430469 - NA 186 thrD CDS COG0527 430623 431987 - [E] Aspartokinases 187 pbtN CDS COG4606 432372 433322 + [P] ABC-type enterochelin transport system, permease component pbtO CDS COG4605 433315 434262 + [P] ABC-type enterochelin transport system, permease component pbtP CDS COG4604 434256 435014 + [P] ABC-type enterochelin transport system, ATPase component pbtQ CDS COG4607 435036 435989 + [P] ABC-type enterochelin transport system, periplasmic component 188 ycnB CDS COG2814 436036 437454 - [G] Arabinose efflux permease ycnC CDS COG1309 437474 438352 - [K] Transcriptional regulator nfrAB CDS COG0778 438516 439265 - [C] Nitroreductase ycnE CDS COG1359 439282 439569 - [S] Uncharacterized conserved protein 189 yczG CDS COG0640 439709 440023 + [K] Predicted transcriptional regulators 190 gabR CDS COG1167 440025 441464 - [KE] Transcriptional regulators containing a DNA-binding HTH 191 gabT CDS COG0160 441571 442881 + [E] 4-aminobutyrate aminotransferase and related aminotransferases gabD CDS COG1012 442950 444338 + [C] NAD-dependent aldehyde dehydrogenases 192 glcU CDS COG4975 444461 445324 + [G] Putative glucose uptake permease gdh CDS COG1028 445344 446129 + [IQR] Dehydrogenases with different specificities (related to 193 cutI CDS COG4549 446174 446788 - [S] Uncharacterized protein conserved in bacteria cutJ CDS COG1276 446801 448426 - [P] Putative copper export protein cutR CDS COG1349 448461 449033 - [KG] Transcriptional regulators of sugar metabolism 194 ycnL CDS ROG0238 449198 449551 + NA 195 mtlA CDS COG2213 449724 451160 + [G] Phosphotransferase system, mannitol-specific IIBC component mtlF CDS COG4668 451185 451616 + [G] Mannitol/fructose-specific phosphotransferase system, IIA domain mtlD CDS COG0246 451618 452739 + [G] Mannitol-1-phosphate/altronate dehydrogenases 196 ycsA CDS COG0473 452830 453894 + [CE] Isocitrate/isopropylmalate dehydrogenase 197 sipU CDS COG0681 454029 454592 + [U] Signal peptidase I 198 yczH CDS COG0412 454652 455260 - [Q] Dienelactone hydrolase and related enzymes 199 ycsD CDS COG0764 455346 455738 + [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 200 yczO CDS NA 455771 455935 - NA 201 ribZ CDS COG0561 456068 456817 + [R] Predicted hydrolases of the HAD superfamily 202 pxpA CDS COG1540 457023 457796 + [R] Uncharacterized proteins, homologs of lactam utilization pxpG CDS NA 457811 459025 + NA pxpI CDS COG4336 459049 459822 + [S] Uncharacterized conserved protein pxpB CDS COG2049 459867 460589 + [E] Allophanate hydrolase subunit 1 pxpC CDS COG1984 460592 461599 + [E] Allophanate hydrolase subunit 2 pxpR CDS COG1414 461615 462367 + [K] Transcriptional regulator lipC CDS COG2755 462431 463072 + [E] Lysophospholipase L1 and related esterases 203 yczI CDS ROG6919 463245 463490 + NA 204 yczJ CDS COG2329 463496 463783 - [R] Uncharacterized enzyme involved in biosynthesis of 205 pbpC CDS COG0768 463934 465940 + [M] Cell division protein FtsI/penicillin-binding protein 2 206 ycsN CDS COG4989 466042 466944 + [R] Predicted oxidoreductase 207 mtlR CDS COG3711 467130 469214 + [K] Transcriptional antiterminator 208 ydaB CDS COG0318 469426 470937 + [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 209 ydaC CDS COG0500 470957 471502 - [QR] SAM-dependent methyltransferases 210 ydaD CDS COG1028 471709 472569 + [IQR] Dehydrogenases with different specificities (related to lyxE CDS COG3822 472585 473088 + [R] ABC-type sugar transport system, auxiliary component 211 ydaF CDS COG1670 473174 473725 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins 212 ydaG CDS COG3871 473803 474225 + [R] Uncharacterized stress protein (general stress protein 213 amj CDS ROG0751 474731 475540 + NA 214 ydzA CDS ROG0032 475584 475874 - NA 215 lrpC CDS COG1522 476059 476493 + [K] Transcriptional regulators topB CDS COG0550 476558 478741 + [L] Topoisomerase IA 216 epsJ CDS ROG2018 3518999 3520033 - NA epsK CDS COG3706 3517485 3519002 - [T] Response regulator containing a CheY-like receiver ydaL CDS COG5298 480875 482584 + [S] Uncharacterized protein conserved in bacteria ydaM CDS COG1215 482577 483839 + [M] Glycosyltransferases, probably involved in cell wall ydaN CDS ROG0761 483845 485956 + NA 217 kimA CDS COG0531 486432 488255 + [E] Amino acid transporters 218 nudT CDS COG1051 488314 488763 + [F] ADP-ribose pyrophosphatase 219 poxB CDS COG0028 488830 490554 + [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 220 cds-SOX90542.1 CDS NA 490546 490749 - NA ydzK CDS ROG7509 490777 491043 - NA 221 mntH CDS COG1914 491147 492424 - [P] Mn2+ and Fe2+ transporters of the 222 ydaS CDS COG2261 492654 492911 - [S] Predicted membrane protein ydaT CDS COG4876 492989 493441 - [S] Uncharacterized protein conserved in bacteria 223 ydbA CDS ROG0663 493559 494377 + NA 224 gsiB CDS COG3729 494506 494877 + [R] General stress protein 225 ydbB CDS COG0662 495009 495350 + [G] Mannose-6-phosphate isomerase ydbC CDS ROG6236 495344 495703 + NA 226 ydbD CDS COG3546 495740 496561 - [P] Mn-containing catalase dctB CDS COG1638 496646 497698 - [G] TRAP-type C4-dicarboxylate transport system, periplasmic component 227 dctS CDS COG3290 497768 499375 + [T] Signal transduction histidine kinase regulating citrate/malate dctR CDS COG4565 499365 500045 + [KT] Response regulator of citrate/malate metabolism dctP CDS COG1301 500166 501431 + [C] Na+/H+-dicarboxylate symporters 228 ydbI CDS COG0628 501579 502631 + [R] Predicted permease 229 ydbJ CDS COG1131 502908 503834 + [V] ABC-type multidrug transport system, ATPase component ydbK CDS COG1277 503854 504594 + [R] ABC-type transport system involved in multi-copper 230 ydbL CDS NA 504689 505024 + NA 231 ydbM CDS COG1960 505152 506297 + [I] Acyl-CoA dehydrogenases 232 fbpB CDS NA 506322 506501 - NA fbpA CDS NA 506455 506619 - NA 233 ydbO CDS COG0053 506866 507738 + [P] Predicted Co/Zn/Cd cation transporters 234 ydbP CDS COG0526 507753 508073 - [OC] Thiol-disulfide isomerase and thioredoxins 235 ddlA CDS COG1181 508248 509312 + [M] D-alanine-D-alanine ligase and related ATP-grasp enzymes murF CDS COG0770 509384 510757 + [M] UDP-N-acetylmuramyl pentapeptide synthase 236 cshA CDS COG0513 511157 512641 + [LKJ] Superfamily II DNA and RNA helicases 237 ydbS CDS COG3402 512814 513293 + [S] Uncharacterized conserved protein ydbT CDS COG3428 513283 514764 + [S] Predicted membrane protein 238 ydcA CDS COG0705 515016 515615 - [R] Uncharacterized membrane protein (homolog of Drosophila 239 acpS CDS COG0736 515710 516075 + [I] Phosphopantetheinyl transferase (holo-ACP synthase) 240 ydcC CDS COG2834 516241 517257 + [M] Outer membrane lipoprotein-sorting protein alrA CDS COG0787 517372 518541 + [M] Alanine racemase 241 ndoAI CDS COG0864 518657 518938 + [K] Predicted transcriptional regulators containing the CopG/Arc/MetJ ndoA CDS COG2337 518943 519293 + [T] Growth inhibitor 242 rsbRA CDS COG1366 519408 520232 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma rsbS CDS COG1366 520237 520602 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma rsbT CDS COG2172 520606 521007 + [T] Anti-sigma regulatory factor (Ser/Thr protein kinase) rsbU CDS COG2208 521019 522026 + [TK] Serine phosphatase RsbU, regulator of sigma rsbV CDS COG1366 522088 522417 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma rsbW CDS COG2172 522414 522896 + [T] Anti-sigma regulatory factor (Ser/Thr protein kinase) sigB CDS COG1191 522862 523650 + [K] DNA-directed RNA polymerase specialized sigma subunit rsbX CDS COG2208 523650 524249 + [TK] Serine phosphatase RsbU, regulator of sigma 243 cds-SOX90543.1 CDS NA 524360 524476 + NA ydcF CDS NA 524492 524785 + NA ydcG CDS ROG2305 524782 525222 + NA ydcH CDS COG1846 525206 525649 + [K] Transcriptional regulators 244 tex CDS COG2183 525743 527902 + [K] Transcriptional accessory protein 245 cmpA CDS NA 527912 528025 - NA 246 ydcK CDS COG3091 528129 528581 + [S] Uncharacterized protein conserved in bacteria 247 trnS-Asn tRNA NA 528704 528778 + NA trnS-Ser tRNA NA 528783 528873 + NA trnS-Glu tRNA NA 528903 528974 + NA trnS-Gln tRNA NA 528986 529060 + NA trnS-Lys tRNA NA 529087 529162 + NA trnS-Leu1 tRNA NA 529174 529255 + NA trnS-Leu2 tRNA NA 529336 529422 + NA 248 ydcL CDS COG0582 529505 530611 - [L] Integrase immA CDS COG2856 530624 531133 - [E] Predicted Zn peptidase immR CDS COG2932 531130 531513 - [K] Predicted transcriptional regulator 249 xis CDS NA 531787 531981 + NA ydzL CDS NA 531978 532238 + NA ydcO CDS NA 532292 532552 + NA 250 cds-SOX90545.1 CDS NA 532758 532886 + NA helP CDS ROG3407 532922 533302 + NA conQ CDS COG1674 533338 534780 + [D] DNA segregation ATPase FtsK/SpoIIIE and related nicK CDS COG2946 534773 535831 + [L] Putative phage replication protein RstA 251 ydcS CDS NA 536096 536365 + NA ydcT CDS COG3199 536404 536670 + [S] Uncharacterized conserved protein yddA CDS NA 536687 536995 + NA conB CDS ROG7789 536985 538049 + NA conC CDS NA 538061 538309 + NA conD CDS NA 538322 538846 + NA conE CDS ROG1026 538734 541229 + NA yddF CDS NA 541248 541574 + NA conG CDS ROG5279 541578 544025 + NA cwlT CDS COG0791 544022 545011 + [M] Cell wall-associated hydrolases (invasion-associated proteins) yddI CDS NA 545026 545532 + NA 252 yddJ CDS ROG3907 545595 545975 + NA 253 yddK CDS ROG2753 546166 546966 - NA 254 rapI CDS COG0457 547306 548481 + [R] FOG: TPR repeat phrI CDS NA 548438 548557 + NA 255 yddM CDS ROG1023 548710 549651 + NA 256 yddN CDS COG2141 550240 551259 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 257 lrpA CDS COG1522 551519 551929 + [K] Transcriptional regulators 258 lrpB CDS COG1522 552052 552501 - [K] Transcriptional regulators 259 yddQ CDS COG1335 552616 553158 + [Q] Amidases related to nicotinamidase 260 yddR CDS COG2220 553711 554475 + [R] Predicted Zn-dependent hydrolases of the beta-lactamase 261 yddS CDS NA 554669 555979 + NA 262 ydzM CDS NA 556562 556738 + NA yddT CDS NA 556763 557449 + NA 263 ydzN CDS NA 557873 558058 + NA 264 sufLC CDS COG0693 558408 559001 + [R] Putative intracellular protease/amidase 265 cspC CDS COG1278 559264 559464 + [K] Cold shock proteins 266 cdnL CDS COG1329 560151 560612 - [K] Transcriptional regulators, similar to M. xanthus 267 ydzE CDS COG0697 561180 561416 - [GER] Permeases of the drug/metabolite transporter (DMT) ydeC CDS COG2207 561514 562389 - [K] AraC-type DNA-binding domain-containing proteins 268 ydeD CDS COG0697 562502 563461 + [GER] Permeases of the drug/metabolite transporter (DMT) 269 ydeE CDS COG3708 563614 564486 - [S] Uncharacterized protein conserved in bacteria 270 ydeF CDS COG1167 564713 566101 + [KE] Transcriptional regulators containing a DNA-binding HTH 271 ydeG CDS NA 566211 567503 + NA 272 ydeH CDS NA 567662 568108 + NA 273 ydeI CDS COG4430 568345 568938 + [S] Uncharacterized protein conserved in bacteria 274 ydeJ CDS ROG1225 569290 569949 - NA 275 ydeK CDS COG0697 570371 571234 - [GER] Permeases of the drug/metabolite transporter (DMT) 276 ydeL CDS COG1167 571389 572780 + [KE] Transcriptional regulators containing a DNA-binding HTH 277 ydeM CDS COG2030 572974 573399 + [I] Acyl dehydratase 278 ydeN CDS COG3545 573452 574024 - [R] Predicted esterase of the alpha/beta hydrolase 279 ydzF CDS COG1733 574106 574435 - [K] Predicted transcriptional regulators 280 ydeO CDS COG1284 574690 575562 + [S] Uncharacterized conserved protein 281 ydeP CDS COG1733 575712 576098 - [K] Predicted transcriptional regulators 282 ydeQ CDS COG2249 576209 576802 + [R] Putative NADPH-quinone reductase (modulator of drug 283 ydeR CDS COG2814 576946 578133 - [G] Arabinose efflux permease 284 ydeS CDS COG1309 578337 578933 + [K] Transcriptional regulator 285 ydzO CDS NA 579047 579232 + NA 286 aseR CDS COG0640 579541 579876 + [K] Predicted transcriptional regulators arsF CDS COG1055 579889 581196 + [P] Na+/H+ antiporter NhaD and related arsenite ydzSn CDS COG0394 581228 581329 + [T] Protein-tyrosine-phosphatase ydzSc CDS COG0394 581341 581454 + [T] Protein-tyrosine-phosphatase 287 ydfB CDS ROG2592 581694 582479 + NA 288 ydfC CDS COG0697 582536 583456 - [GER] Permeases of the drug/metabolite transporter (DMT) 289 ydfD CDS COG1167 583589 585037 + [KE] Transcriptional regulators containing a DNA-binding HTH 290 ydfE CDS NA 585155 585778 - NA 291 ydfF CDS COG0640 585868 586548 + [K] Predicted transcriptional regulators 292 ydfG CDS COG2128 586628 587071 - [S] Uncharacterized conserved protein 293 ydzP CDS ROG4449 587157 587336 - NA ydzQ CDS NA 587333 587476 - NA 294 ydfH CDS COG4585 587744 588967 + [T] Signal transduction histidine kinase ydfI CDS COG2197 588960 589601 + [TK] Response regulator containing a CheY-like receiver ydfJ CDS COG2409 589717 591891 + [R] Predicted drug exporters of the RND 295 cesA CDS COG0596 592303 593205 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 296 ydfK CDS COG1811 593407 594096 - [R] Uncharacterized membrane protein, possible Na+ channel ydfL CDS COG4978 594186 594998 - [KT] Transcriptional regulator, effector-binding domain/component mneP CDS COG0053 595109 596002 - [P] Predicted Co/Zn/Cd cation transporters 297 ydfN CDS COG0778 596478 597098 + [C] Nitroreductase ydfO CDS COG0346 597114 598052 + [E] Lactoylglutathione lyase and related lyases ydfP CDS COG2259 598154 598543 + [S] Predicted membrane protein 298 ydfQ CDS COG3118 598729 599067 + [O] Thioredoxin domain-containing protein 299 ydzH CDS NA 599107 599343 - NA 300 ydzR CDS NA 599875 600105 - NA 301 ydfR CDS COG2323 600229 600906 - [S] Predicted membrane protein 302 ydfS CDS COG2323 601019 601726 + [S] Predicted membrane protein 303 cotP CDS COG0071 601741 602172 - [O] Molecular chaperone (small heat shock protein) ydgA CDS NA 602185 602427 - NA ydgB CDS NA 602441 602713 - NA 304 ydgC CDS COG1309 603012 603599 + [K] Transcriptional regulator ydgD CDS ROG5036 603596 603940 + NA 305 ydgE CDS COG0454 604103 604576 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 306 vmlR CDS COG0488 604736 606379 - [R] ATPase components of ABC transporters with 307 ydgF CDS COG1113 606699 608075 - [E] Gamma-aminobutyrate permease and related permeases 308 dinB CDS COG2318 608246 608764 - [S] Uncharacterized protein conserved in bacteria 309 ydgG CDS ROG7958 608933 609391 + NA ydgH CDS COG2409 609388 612045 + [R] Predicted drug exporters of the RND 310 ydgI CDS COG0778 612191 612820 - [C] Nitroreductase ydgJ CDS COG1846 612836 613330 - [K] Transcriptional regulators 311 ydgK CDS COG2814 613641 614849 + [G] Arabinose efflux permease 312 ydhB CDS COG0730 614885 615622 - [R] Predicted permeases 313 ydhC CDS COG1802 615871 616545 + [K] Transcriptional regulators 314 spoL CDS COG3858 616672 617934 + [R] Predicted glycosyl hydrolase 315 ydhE CDS COG1819 618095 619282 + [GC] Glycosyl transferases, related to UDP-glucuronosyltransferase 316 ydhF CDS ROG3723 619321 620031 - NA 317 phoB CDS COG1785 620097 621485 - [P] Alkaline phosphatase 318 fra CDS COG5646 621847 622218 + [S] Uncharacterized conserved protein 319 ydhH CDS NA 622293 622790 - NA ydhI CDS COG0454 622808 623290 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 320 ydhJ CDS COG1078 623373 624350 + [R] HD superfamily phosphohydrolases 321 ydhK CDS ROG4831 624492 625109 + NA 322 pbuE CDS COG2814 625125 626291 - [G] Arabinose efflux permease 323 gmuB CDS COG1440 626622 626933 + [G] Phosphotransferase system cellobiose-specific component IIB gmuA CDS COG1447 626933 627265 + [G] Phosphotransferase system cellobiose-specific component IIA gmuC CDS COG1455 627284 628612 + [G] Phosphotransferase system cellobiose-specific component IIC gmuD CDS COG2723 628630 630027 + [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase gmuR CDS COG2188 630170 630883 + [K] Transcriptional regulators gmuE CDS COG1940 630912 631811 + [KG] Transcriptional regulator/sugar kinase gmuF CDS COG1482 631808 632755 + [G] Phosphomannose isomerase gmuG CDS COG4124 632774 633862 + [G] Beta-mannanase 324 ydhUc CDS COG3546 633923 634651 - [P] Mn-containing catalase ydhUn CDS COG3546 634651 634776 - [P] Mn-containing catalase 325 trnE-Arg tRNA NA 635110 635186 + NA trnE-Gly tRNA NA 635200 635273 + NA rrnE-16S rRNA NA 635433 636987 + NA rrnE-23S rRNA NA 637155 640082 + NA rrnE-5S rRNA NA 640138 640254 + NA trnE-Met tRNA NA 640268 640344 + NA trnE-Asp tRNA NA 640405 640481 + NA 326 thiL CDS COG0611 640662 641639 + [H] Thiamine monophosphate kinase tsaE CDS COG0802 641654 642130 + [R] Predicted ATPase or kinase tsaB CDS COG1214 642111 642800 + [O] Inactive homolog of metal-dependent proteases, putative rimI CDS COG0456 642810 643265 + [R] Acetyltransferases tsaD CDS COG0533 643258 644298 + [O] Metal-dependent proteases with possible chaperone activity 327 ydiF CDS COG0488 644528 646456 - [R] ATPase components of ABC transporters with 328 moaC CDS COG0315 646582 647094 + [H] Molybdenum cofactor biosynthesis enzyme rex CDS COG2344 647091 647738 + [R] AT-rich DNA-binding protein tatAY CDS COG1826 647760 647933 + [U] Sec-independent protein secretion pathway components tatCY CDS COG0805 647940 648704 + [U] Sec-independent protein secretion pathway component TatC 329 ydiK CDS NA 648742 648933 - NA ydiL CDS COG1266 648930 649664 - [R] Predicted metal-dependent membrane protease 330 groES CDS COG0234 649903 650187 + [O] Co-chaperonin GroES (HSP10) groEL CDS COG0459 650234 651868 + [O] Chaperonin GroEL (HSP60 family) 331 ydzTc CDS ROG3079 651977 652084 - NA ydzT CDS NA 652511 652720 - NA ydzT_2 NA NA 332 ydzT_3 NA NA ydzTn CDS NA 652713 653018 - NA 333 ydiM CDS NA 653432 653812 + NA 334 ydzU CDS NA 654071 654343 + NA ydzV CDS COG3728 654333 654692 + [L] Phage terminase, small subunit 335 ydiN CDS NA 654978 655193 + NA bsuMA CDS COG0270 655223 656506 + [L] Site-specific DNA methylase bsuMB CDS COG0270 656528 657697 + [L] Site-specific DNA methylase 336 ydzWc CDS NA 657793 658062 - NA ydzWmc CDS NA 658061 658189 - NA ydzWmb CDS NA 658189 658605 - NA ydzW CDS NA 658813 659010 - NA ydzW_2 COG1109 [G] Phosphomannomutase ydzWma CDS NA 659010 659129 - NA ydzWn CDS NA 659129 659221 - NA 337 bsuRA CDS NA 659623 660564 + NA bsuRB CDS COG1401 660596 661627 + [V] GTPase subunit of restriction endonuclease bsuRC CDS NA 661630 663027 + NA 338 ydjB CDS NA 663601 663936 + NA 339 ydjC CDS NA 664319 664669 + NA 340 gutR CDS COG0457 664775 667264 - [R] FOG: TPR repeat 341 gutB CDS COG1063 667466 668527 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases gutP CDS COG2211 668601 669992 + [G] Na+/melibiose symporter and related transporters ydjE CDS COG0524 670087 671049 + [G] Sugar kinases, ribokinase family 342 pspA CDS COG1842 671245 671928 + [KT] Phage shock protein A (IM30), suppresses 343 ydjG CDS ROG0309 671994 673019 + NA ydjH CDS COG1512 673019 673783 + [R] Beta-propeller domains of methanol dehydrogenase type ydjI CDS COG4260 673814 674785 + [S] Putative virion core protein (lumpy skin 344 ydjJ CDS ROG3736 674832 675857 - NA 345 iolT CDS COG2814 676442 677863 + [G] Arabinose efflux permease 346 bdhA CDS COG1063 677911 678951 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 347 walM CDS COG4956 679390 679761 + [R] Integral membrane protein (PIN domain superfamily) 348 ydjN CDS COG1506 679827 680873 + [E] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 349 ydzJ CDS NA 680907 681065 - NA 350 ydjO CDS ROG2935 681255 681464 - NA 351 ydjP CDS COG0596 681547 682362 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase yeaA CDS ROG3499 682375 683364 - NA 352 cotA CDS COG2132 683462 685003 - [Q] Putative multicopper oxidases 353 gabP CDS COG1113 685155 686564 - [E] Gamma-aminobutyrate permease and related permeases ydzX CDS NA 686602 686889 - NA 354 mneS CDS COG0053 686962 687834 + [P] Predicted Co/Zn/Cd cation transporters 355 yeaC CDS COG0714 688184 689146 + [R] MoxR-like ATPases yeaD CDS COG1721 689146 690342 + [R] Uncharacterized conserved protein (some members contain yebA CDS COG1305 690364 692577 + [E] Transglutaminase-like enzymes, putative cysteine proteases guaA CDS COG0519 692740 694281 + [F] GMP synthase, PP-ATPase domain/subunit 356 pbuG CDS COG2252 694662 695984 + [R] Permeases 357 yebC CDS NA 696195 696998 + NA 358 yebD CDS NA 697157 697324 + NA 359 yebE CDS COG4843 697538 698092 + [S] Uncharacterized protein conserved in bacteria yebG CDS ROG2761 698092 698289 + NA 360 purE CDS COG0041 698612 699100 + [F] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase purK CDS COG0026 699093 700235 + [F] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) purB CDS COG0015 700232 701527 + [F] Adenylosuccinate lyase purC CDS COG0152 701601 702326 + [F] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase purS CDS COG1828 702319 702573 + [F] Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component purQ CDS COG0047 702570 703253 + [F] Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain purL CDS COG0046 703237 705465 + [F] Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain purF CDS COG0034 705441 706871 + [F] Glutamine phosphoribosylpyrophosphate amidotransferase purM CDS COG0150 706973 708013 + [F] Phosphoribosylaminoimidazole (AIR) synthetase purN CDS COG0299 708010 708597 + [F] Folate-dependent phosphoribosylglycinamide formyltransferase PurN purH CDS COG0138 708594 710132 + [F] AICAR transformylase/IMP cyclohydrolase PurH (only IMP purD CDS COG0151 710148 711416 + [F] Phosphoribosylamine-glycine ligase 361 yezC CDS COG1522 711456 711875 - [K] Transcriptional regulators 362 yecA CDS COG0531 712019 713293 + [E] Amino acid transporters 363 yezF CDS ROG7320 713308 713535 - NA 364 yerA CDS COG1001 713664 715406 + [F] Adenine deaminase yerB CDS ROG0516 715433 716428 + NA yerC CDS COG4496 716431 716745 + [S] Uncharacterized protein conserved in bacteria 365 yerD CDS COG0069 716780 718357 - [E] Glutamate synthase domain 2 366 pcrB CDS COG1646 718622 719308 + [R] Predicted phosphate-binding enzymes, TIM-barrel fold pcrA CDS COG0210 719370 721589 + [L] Superfamily I DNA and RNA helicases ligA CDS COG0272 721613 723619 + [L] NAD-dependent DNA ligase (contains BRCT domain yerH CDS COG4851 723635 724825 + [R] Protein involved in sex pheromone biosynthesis 367 yerI CDS COG2334 724987 725997 + [R] Putative homoserine kinase type II (protein 368 sapB CDS COG1285 726035 726733 - [S] Uncharacterized membrane protein 369 opuE CDS COG0591 726840 728318 - [ER] Na+/proline symporter 370 gatC CDS COG0721 728732 729022 + [J] Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit gatA CDS COG0154 729038 730495 + [J] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related gatB CDS COG0064 730509 731939 + [J] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 371 yerO CDS COG1309 731954 732823 - [K] Transcriptional regulator 372 srfP CDS COG3696 732955 736113 + [P] Putative silver efflux pump 373 dagK CDS COG1597 736436 737347 + [IR] Sphingosine kinase and enzymes related to 374 rlmCD CDS COG2265 737603 738982 + [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 375 yefB CDS COG1961 738995 739897 - [L] Site-specific recombinases, DNA invertase Pin homologs 376 yefC CDS COG1961 739878 740213 + [L] Site-specific recombinases, DNA invertase Pin homologs yeeA CDS COG1002 740288 742927 + [V] Type II restriction enzyme, methylase subunits yeeB CDS ROG0964 742939 744738 + NA 377 yeeC CDS ROG1052 744851 745999 + NA 378 yeeD CDS NA 746261 746566 - NA 379 yezA CDS NA 746633 746839 - NA 380 yezG CDS NA 747079 747534 - NA yeeF CDS COG5444 747554 749563 - [S] Uncharacterized conserved protein 381 yeeG CDS NA 749775 750797 + NA 382 rapH CDS COG0457 750959 752089 + [R] FOG: TPR repeat phrH CDS NA 752079 752252 + NA 383 yeeI CDS COG0217 752412 753131 + [S] Uncharacterized conserved protein 384 cotK CDS NA 753265 753702 + NA 385 yezE CDS COG1309 753817 754401 + [K] Transcriptional regulator 386 yesE CDS COG3631 754480 754923 + [R] Ketosteroid isomerase-related protein yesF CDS COG0702 754920 755780 + [MG] Predicted nucleoside-diphosphate-sugar epimerases 387 cotJA CDS NA 755907 756155 + NA cotJB CDS ROG0459 756139 756402 + NA cotJC CDS COG3546 756417 756986 + [P] Mn-containing catalase 388 yesJ CDS COG0454 757111 757653 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases yesK CDS ROG1839 757676 757978 + NA 389 yesL CDS COG5578 758093 758722 + [S] Predicted integral membrane protein yesM CDS COG2972 758719 760452 + [T] Predicted signal transduction protein with a yesN CDS COG4753 760452 761558 + [T] Response regulator containing CheY-like receiver domain yesO CDS COG1653 761662 762945 + [G] ABC-type sugar transport system, periplasmic component rhgP CDS COG1175 762942 763871 + [G] ABC-type sugar transport systems, permease components rhgQ CDS COG0395 763875 764765 + [G] ABC-type sugar transport system, permease component rhgH CDS COG4225 764781 765815 + [R] Predicted unsaturated glucuronyl hydrolase involved in rhgR CDS COG2207 765838 768123 + [K] AraC-type DNA-binding domain-containing proteins rhgT CDS COG0305 768137 768835 + [L] Replicative DNA helicase yesU CDS NA 768828 769490 + NA yesV CDS COG5578 769487 770113 + [S] Predicted integral membrane protein 390 rhgW CDS ROG1629 770234 772096 + NA rhgX CDS ROG1629 772142 773980 + NA 391 yesY CDS COG2755 774138 774791 + [E] Lysophospholipase L1 and related esterases rhgZ CDS COG1874 774799 776790 + [G] Beta-galactosidase yetA CDS ROG8069 776834 779407 + NA 392 lplA CDS COG1653 779529 781037 + [G] ABC-type sugar transport system, periplasmic component lplB CDS COG4209 781092 782048 + [G] ABC-type polysaccharide transport system, permease component lplC CDS COG0395 782062 782949 + [G] ABC-type sugar transport system, permease component lplD CDS COG1486 782958 784298 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 393 yetF CDS COG2323 784381 785076 + [S] Predicted membrane protein 394 hmoA CDS COG2329 785113 785439 - [R] Uncharacterized enzyme involved in biosynthesis of 395 yetH CDS ROG1880 785543 785905 - NA 396 yetI CDS COG1366 787264 787560 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma yetI_2 COG1366 [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma 397 yezD CDS COG5583 787715 787882 + [S] Uncharacterized small protein 398 calJ CDS COG0670 787992 788636 + [R] Integral membrane protein, interacts with FtsH yetK CDS COG0697 788636 789628 + [GER] Permeases of the drug/metabolite transporter (DMT) 399 flvL CDS COG1846 789652 790155 - [K] Transcriptional regulators 400 flvM CDS COG0654 790318 791427 + [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 401 yetN CDS ROG6391 791462 792532 - NA 402 cypD CDS COG0369 792682 795867 + [P] Sulfite reductase, alpha subunit (flavoprotein) 403 ltaSA CDS COG1368 796314 798233 + [M] Phosphoglycerol transferase and related proteins, alkaline 404 spmH CDS COG1208 798469 799233 + [MJ] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation spmG CDS COG0451 799240 800208 + [MG] Nucleoside-diphosphate-sugar epimerases yfnF CDS ROG5069 800232 801143 + NA yfnE CDS COG1216 801172 802350 + [R] Predicted glycosyltransferases yfnD CDS ROG5069 802351 803286 + NA 405 yfnC CDS COG2814 803317 804546 - [G] Arabinose efflux permease 406 pynN CDS COG1011 804657 805364 - [R] Predicted hydrolase (HAD superfamily) mtrA CDS COG0531 805456 806841 - [E] Amino acid transporters 407 vdhT CDS COG1012 807091 808548 + [C] NAD-dependent aldehyde dehydrogenases yfmS CDS COG0840 808562 809422 + [NT] Methyl-accepting chemotaxis protein ettA CDS COG0488 809557 811446 + [R] ATPase components of ABC transporters with 408 yfmQ CDS ROG8305 811569 812015 + NA 409 copP CDS COG0789 812140 812562 + [K] Predicted transcriptional regulators copO CDS COG2814 812628 813818 + [G] Arabinose efflux permease 410 yfmN CDS NA 814109 814264 + NA 411 ettM CDS COG0488 814384 815940 - [R] ATPase components of ABC transporters with 412 yfmL CDS COG0513 816113 817243 + [LKJ] Superfamily II DNA and RNA helicases 413 yfmK CDS ROG4706 817311 817757 + NA 414 yfmJ CDS COG2130 817810 818829 - [R] Putative NADP-dependent oxidoreductases 415 yfmI CDS ROG7086 819311 820531 - NA 416 yfmG CDS COG1262 820867 822330 + [S] Uncharacterized conserved protein 417 fecF CDS COG1120 822903 823703 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fecE CDS COG0609 823716 824717 - [P] ABC-type Fe3+-siderophore transport system, permease component fecD CDS COG0609 824714 825715 - [P] ABC-type Fe3+-siderophore transport system, permease component fecC CDS COG4594 825787 826734 - [P] ABC-type Fe3+-citrate transport system, periplasmic component 418 yfmB CDS NA 826843 827211 - NA 419 yflT CDS ROG5855 827455 827802 + NA 420 pelA CDS COG3866 827993 829255 + [G] Pectate lyase 421 maeS CDS COG0471 829382 830818 + [P] Di- and tricarboxylate transporters citS CDS COG3290 830945 832573 + [T] Signal transduction histidine kinase regulating citrate/malate citT CDS COG4565 832545 833225 + [KT] Response regulator of citrate/malate metabolism yflP CDS COG3181 833228 834187 + [S] Uncharacterized protein conserved in bacteria 422 citM CDS COG2851 834383 835684 + [C] H+/citrate symporter yflN CDS COG0491 835740 836534 + [R] Zn-dependent hydrolases, including glyoxylases 423 nosA CDS COG4362 836653 837744 + [PE] Nitric oxide synthase, oxygenase domain 424 acyP CDS COG1254 837735 838010 - [C] Acylphosphatases 425 yflK CDS COG2258 838077 838742 + [S] Uncharacterized protein conserved in bacteria 426 yflJ CDS NA 838783 838920 - NA 427 yflI CDS NA 839077 839232 - NA 428 yflH CDS ROG1572 839339 839653 - NA 429 mapB CDS COG0024 839735 840484 - [J] Methionine aminopeptidase 430 nagP CDS COG1263 840656 842014 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 431 ltaSB CDS COG1368 842047 843996 - [M] Phosphoglycerol transferase and related proteins, alkaline 432 yflD CDS NA 844097 844234 + NA yflB CDS ROG0120 844253 844645 + NA 433 yflA CDS COG1115 844770 846185 + [E] Na+/alanine symporter 434 yfkT CDS ROG0243 846182 847258 - NA yfkS CDS COG0597 847282 847482 - [MU] Lipoprotein signal peptidase yfkR CDS ROG0172 847498 848652 - NA yfkQ CDS ROG0098 848633 850174 - NA 435 treP CDS COG1263 850367 851779 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific treA CDS COG0366 851850 853535 + [G] Glycosidases treR CDS COG2188 853556 854272 + [K] Transcriptional regulators 436 hypO CDS COG0778 854412 855077 + [C] Nitroreductase 437 yfkN CDS COG0737 855114 859502 - [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 438 sufLB CDS COG0693 859745 860263 + [R] Putative intracellular protease/amidase 439 yfkL CDS COG0477 860303 861493 - [GEPR] Permeases of the major facilitator superfamily 440 yfkK CDS COG4840 861586 861801 - [S] Uncharacterized protein conserved in bacteria 441 yfkJ CDS COG0394 862004 862474 + [T] Protein-tyrosine-phosphatase yfkI CDS ROG6571 862492 862812 + NA rbn CDS COG1295 862836 863663 + [S] Predicted membrane protein 442 yfkF CDS COG0477 863862 865037 - [GEPR] Permeases of the major facilitator superfamily 443 chaA CDS COG0387 865205 866260 + [P] Ca2+/H+ antiporter 444 yfkD CDS ROG3232 866331 867125 + NA 445 mscC CDS COG0668 867164 868006 - [M] Small-conductance mechanosensitive channel yfkA CDS COG0535 868007 869128 - [R] Predicted Fe-S oxidoreductases 446 yfjT CDS COG3334 869273 869458 + [S] Uncharacterized conserved protein 447 pdaA CDS COG0726 869559 870350 + [G] Predicted xylanase/chitin deacetylase 448 yfjR CDS COG2084 870388 871248 - [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 449 yfjQ CDS COG0598 871347 872306 - [P] Mg2+ and Co2+ transporters 450 yfjP CDS COG0122 872425 873288 + [L] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase yfjO CDS COG2265 873402 874802 + [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 451 yfzA CDS NA 875428 875694 + NA 452 dusC CDS COG0042 876426 877403 + [J] tRNA-dihydrouridine synthase 453 yfjM CDS ROG5541 877599 878051 + NA yfjL CDS NA 878081 878770 + NA 454 acoA CDS COG1071 879002 880003 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, acoB CDS COG0022 880007 881035 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, acoC CDS COG0508 881049 882245 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) acoL CDS COG1249 882266 883642 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) acoR CDS COG3284 883758 885575 + [QK] Transcriptional activator of acetoin/glycerol metabolism sspH CDS ROG4512 885629 885808 + NA 455 yfjF CDS COG1742 885844 886173 - [S] Uncharacterized conserved protein yfjE CDS NA 886223 886681 - NA 456 yfjD CDS NA 886775 887332 - NA yfjC CDS NA 887364 888131 - NA yfjB CDS ROG4239 888143 889366 - NA yfjA CDS COG4842 889372 889686 - [S] Uncharacterized protein conserved in bacteria 457 malA CDS COG1486 890022 891371 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases malR CDS COG1737 891436 892200 + [K] Transcriptional regulators malP CDS COG1263 892215 893798 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific yfiB CDS COG1132 893904 895625 + [V] ABC-type multidrug transport system, ATPase and yfiC CDS COG1132 895619 897433 + [V] ABC-type multidrug transport system, ATPase and 458 catD CDS COG2259 897588 897992 + [S] Predicted membrane protein catE CDS COG2514 898010 898867 + [R] Predicted ring-cleavage extradiol dioxygenase 459 yfiF CDS COG2207 898961 899905 + [K] AraC-type DNA-binding domain-containing proteins yfiG CDS COG0477 900080 901528 + [GEPR] Permeases of the major facilitator superfamily yfiH CDS COG1082 901555 902496 + [G] Sugar phosphate isomerases/epimerases yfiI CDS COG0673 902506 903687 + [R] Predicted dehydrogenases and related proteins 460 linJ CDS COG4585 903811 905013 + [T] Signal transduction histidine kinase linK CDS COG2197 905010 905672 + [TK] Response regulator containing a CheY-like receiver bifL CDS COG1131 905816 906751 + [V] ABC-type multidrug transport system, ATPase component bifM CDS COG1668 906764 907954 + [CP] ABC-type Na+ efflux pump, permease component bifN CDS COG0842 907968 909125 + [V] ABC-type multidrug transport system, permease component 461 padR CDS COG1695 909198 909746 - [K] Predicted transcriptional regulators 462 estB CDS COG1075 910019 910651 + [R] Predicted acetyltransferases and hydrolases with the 463 icaC CDS COG3936 910840 911928 + [G] Protein involved in polysaccharide intercellular adhesin 464 yfiR CDS COG1309 911964 912581 - [K] Transcriptional regulator yfiS CDS NA 912547 913800 - NA 465 bstA CDS ROG1032 913924 914460 + NA 466 yfiU CDS COG2814 914457 916013 - [G] Arabinose efflux permease yfiV CDS COG1846 916124 916606 - [K] Transcriptional regulators 467 mprF CDS COG2898 916778 919348 + [S] Uncharacterized conserved protein 468 sxzY CDS COG0614 919366 920343 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component 469 sxzZ CDS COG0609 920474 921475 + [P] ABC-type Fe3+-siderophore transport system, permease component sxzA CDS COG0609 921472 922503 + [P] ABC-type Fe3+-siderophore transport system, permease component 470 yfhB CDS COG0384 922618 923499 + [R] Predicted epimerase, PhzC/PhzF homolog 471 yfhC CDS COG0778 923587 924171 + [C] Nitroreductase 472 yfhD CDS NA 924210 924401 - NA 473 yfhE CDS NA 924468 924578 - NA yfhF CDS COG1090 924633 925544 - [R] Predicted nucleoside-diphosphate sugar epimerase 474 recX CDS COG2137 925633 926427 + [R] Uncharacterized protein conserved in bacteria yfhH CDS ROG1623 926429 926743 + NA 475 yfhI CDS COG2814 926886 928079 + [G] Arabinose efflux permease 476 sspK CDS NA 928112 928264 - NA 477 yfhJ CDS ROG8169 928389 928658 + NA 478 yfhK CDS COG3103 928803 929321 + [T] SH3 domain protein 479 spdL CDS COG5658 929406 929738 + [S] Predicted integral membrane protein ephM CDS COG0596 929725 930585 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 480 csbB CDS COG0463 930818 931807 + [M] Glycosyltransferases involved in cell wall biogenesis yfhO CDS COG4485 931879 934464 + [S] Predicted membrane protein 481 yfhP CDS COG1988 934457 935440 - [R] Predicted membrane-bound metal-dependent hydrolases 482 mutY CDS COG1194 935656 936765 + [L] A/G-specific DNA glycosylase 483 yfhS CDS ROG3434 936773 936997 - NA 484 fabL CDS COG1028 937079 937831 + [IQR] Dehydrogenases with different specificities (related to 485 sspE CDS ROG0156 937900 938154 + NA 486 ygaB CDS COG1579 938243 938587 + [R] Zn-ribbon protein, possibly nucleic acid-binding 487 ygaC CDS COG3557 938731 939261 + [J] Uncharacterized domain/protein associated with RNAses G 488 ygaD CDS COG1132 939349 941091 + [V] ABC-type multidrug transport system, ATPase and 489 ygaE CDS COG4129 941168 942229 - [S] Predicted membrane protein 490 gsaB CDS COG0001 942449 943738 - [H] Glutamate-1-semialdehyde aminotransferase 491 bcp CDS COG1225 943891 944364 + [O] Peroxiredoxin perR CDS COG0735 944487 944924 + [P] Fe2+/Zn2+ uptake regulation proteins 492 ygzB CDS ROG3989 944959 945312 - NA 493 ygxA CDS ROG7769 945520 946404 + NA 494 rrnD-16S rRNA NA 946696 948250 + NA rrnD-23S rRNA NA 948418 951345 + NA rrnD-5S rRNA NA 951457 951572 + NA asnTA tRNA NA 951582 951656 + NA trnD-Ser tRNA NA 951662 951753 + NA trnD-Glu tRNA NA 951788 951859 + NA trnD-Val tRNA NA 951869 951944 + NA trnD-Met tRNA NA 951954 952030 + NA trnD-Asp tRNA NA 952042 952118 + NA trnD-Phe tRNA NA 952131 952206 + NA trnD-Thr tRNA NA 952212 952284 + NA trnD-Tyr tRNA NA 952307 952391 + NA trnD-Trp tRNA NA 952397 952470 + NA trnD-His tRNA NA 952495 952570 + NA trnD-Gln tRNA NA 952580 952651 + NA glyTB tRNA NA 952701 952775 + NA cysTA tRNA NA 952781 952851 + NA leuTA tRNA NA 952859 952947 + NA leuTB tRNA NA 953213 953294 + NA 495 spo0M CDS COG4326 953373 954149 - [R] Sporulation control protein 496 ygzA CDS NA 954291 954494 + NA 497 ygzC CDS COG5577 954579 954851 - [M] Spore coat protein 498 ygaJ CDS COG3340 954893 955585 + [E] Peptidase E 499 thiC CDS COG0422 955895 957667 + [H] Thiamine biosynthesis protein ThiC 500 ygaK CDS NA 957705 959060 - NA 501 senS CDS NA 959311 959508 + NA 502 katA CDS COG0753 959535 960986 - [P] Catalase 503 ssuB CDS COG1116 961394 962161 + [P] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component ssuA CDS COG0715 962179 963177 + [P] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components ssuC CDS COG0600 963174 964004 + [P] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component ssuD CDS COG2141 964027 965157 + [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 504 ygaN CDS NA 965261 965797 + NA 505 rpsNB CDS COG0199 965909 966178 + [J] Ribosomal protein S14 506 ygaO CDS COG3307 966196 966669 - [M] Lipid A core - O-antigen ligase ygzD CDS COG1476 966671 966871 - [K] Predicted transcriptional regulators 507 trnSL-Gly1 tRNA NA 967065 967138 + NA 508 yhzB CDS COG3382 967229 967852 - [S] Uncharacterized conserved protein 509 queG CDS COG1600 967935 969095 + [C] Uncharacterized Fe-S protein 510 yhbB CDS ROG0191 969162 970097 + NA trmL CDS COG0219 970135 970617 + [J] Predicted rRNA methylase (SpoU class) yhbD CDS ROG5562 970667 971383 + NA yhbE CDS COG1664 971374 972087 + [M] Integral membrane protein CcmA involved in yhbF CDS COG1664 972099 972806 + [M] Integral membrane protein CcmA involved in 511 prkA CDS COG2766 973156 975051 + [T] Putative Ser protein kinase yhbH CDS COG2718 975231 976409 + [S] Uncharacterized conserved protein 512 yhbI CDS COG1846 976569 977033 + [K] Transcriptional regulators yhbJ CDS COG1566 977069 977734 + [V] Multidrug resistance efflux pump yhcA CDS COG0477 977775 979373 + [GEPR] Permeases of the major facilitator superfamily yhcB CDS COG0655 979396 979926 + [R] Multimeric flavodoxin WrbA yhcC CDS ROG0995 979939 980313 + NA yhcD CDS NA 980313 980468 + NA yhcE CDS NA 980473 981234 + NA yhcF CDS COG1725 981237 981602 + [K] Predicted transcriptional regulators yhcG CDS COG4555 981604 982302 + [CP] ABC-type Na+ transport system, ATPase component yhcH CDS COG1131 982319 983236 + [V] ABC-type multidrug transport system, ATPase component yhcI CDS COG1277 983229 984170 + [R] ABC-type transport system involved in multi-copper 513 cspB CDS COG1278 984262 984465 - [K] Cold shock proteins 514 yhcJ CDS COG1464 984901 985731 + [P] ABC-type metal ion transport system, periplasmic 515 dgcK CDS COG2199 985734 986813 - [T] FOG: GGDEF domain 516 tcyP CDS COG1823 986986 988377 + [R] Predicted Na+/dicarboxylate symporter 517 yhcM CDS ROG2772 988417 988872 - NA 518 yhcN CDS ROG0568 989022 989591 + NA 519 yhcO CDS ROG1400 989712 990680 + NA 520 yhcQ CDS COG5577 990612 991265 - [M] Spore coat protein 521 mncR CDS COG4085 991348 995001 + [R] Predicted RNA-binding protein, contains TRAM domain srtA CDS COG3764 994998 995594 + [M] Sortase (surface protein transpeptidase) 522 yhcT CDS COG0564 995624 996532 - [J] Pseudouridylate synthases, 23S RNA-specific 523 yhcU CDS NA 996643 997038 + NA 524 yhcV CDS COG0517 997175 997597 + [R] FOG: CBS domain 525 glpW CDS COG0637 997724 998386 + [R] Predicted phosphatase/phosphohexomutase yhcX CDS COG0388 998402 999943 + [R] Predicted amidohydrolase yhzG CDS COG0679 1000027 1000218 + [R] Predicted permeases 526 yhxA CDS COG0161 1000364 1001716 + [H] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase glpP CDS COG1954 1001744 1002322 + [K] Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 527 glpF CDS COG0580 1002501 1003325 + [G] Glycerol uptake facilitator and related permeases glpK CDS COG0554 1003344 1004834 + [C] Glycerol kinase glpD CDS COG0578 1004975 1006642 + [C] Glycerol-3-phosphate dehydrogenase 528 pgcA CDS COG1109 1006774 1008519 + [G] Phosphomannomutase 529 yhcY CDS COG4585 1008668 1009807 + [T] Signal transduction histidine kinase yhcZ CDS COG2197 1009804 1010448 + [TK] Response regulator containing a CheY-like receiver azr CDS COG0431 1010445 1010969 + [R] Predicted flavoprotein 530 yhdB CDS ROG8509 1010984 1011226 - NA 531 yhdC CDS NA 1011427 1011750 + NA 532 lytF CDS COG1388 1011792 1013258 - [M] FOG: LysM repeat 533 nsrR CDS COG1959 1013411 1013851 - [K] Predicted transcriptional regulator 534 ygxB CDS ROG0133 1013958 1015616 - NA 535 spoVR CDS COG2719 1015647 1017053 + [S] Uncharacterized conserved protein 536 phoA CDS COG1785 1017083 1018468 - [P] Alkaline phosphatase 537 lytE CDS COG1388 1018998 1020002 + [M] FOG: LysM repeat 538 citR CDS COG0583 1020073 1020948 - [K] Transcriptional regulator 539 citA CDS COG0372 1021057 1022157 + [C] Citrate synthase yhdF CDS COG1028 1022231 1023100 + [IQR] Dehydrogenases with different specificities (related to 540 bcaP CDS COG0531 1023350 1024747 + [E] Amino acid transporters 541 yhdH CDS COG0733 1024865 1026220 + [R] Na+-dependent transporters of the SNF family 542 yhdI CDS COG1167 1026255 1027664 - [KE] Transcriptional regulators containing a DNA-binding HTH 543 yhdJ CDS COG0454 1027774 1028202 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 544 asiMB CDS NA 1028233 1028523 - NA asiMA CDS ROG2816 1028511 1029587 - NA sigM CDS COG1595 1029577 1030068 - [K] DNA-directed RNA polymerase specialized sigma subunit, 545 akrN CDS COG0667 1030265 1031260 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 546 plsC CDS COG0204 1031395 1031994 + [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase 547 yhdP CDS COG1253 1032063 1033397 - [R] Hemolysins and related proteins containing CBS 548 cueR CDS COG0789 1033458 1033889 - [K] Predicted transcriptional regulators 549 yhdR CDS COG0436 1034046 1035227 + [E] Aspartate/tyrosine/aromatic aminotransferase 550 yhdT CDS COG1253 1035554 1036939 + [R] Hemolysins and related proteins containing CBS 551 crcBA CDS COG0239 1036953 1037309 - [D] Integral membrane protein possibly involved in crcBB CDS COG0239 1037306 1037701 - [D] Integral membrane protein possibly involved in yhdW CDS COG0584 1037688 1038419 - [C] Glycerophosphoryl diester phosphodiesterase 552 yhdX CDS NA 1038653 1038760 + NA 553 mscY CDS COG0668 1038909 1040024 + [M] Small-conductance mechanosensitive channel 554 srtN CDS COG0846 1040094 1040837 + [K] NAD-dependent protein deacetylases, SIR2 family 555 yheN CDS COG0726 1040861 1041709 - [G] Predicted xylanase/chitin deacetylase 556 dat CDS COG0115 1041994 1042842 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 557 nhaC CDS COG1757 1042885 1044246 - [C] Na+/H+ antiporter 558 nhaX CDS COG0589 1044373 1044873 - [T] Universal stress protein UspA and related 559 bmrB CDS NA 1045037 1045198 + NA 560 bmrC CDS COG1132 1045318 1047075 + [V] ABC-type multidrug transport system, ATPase and bmrD CDS COG1132 1047072 1049093 + [V] ABC-type multidrug transport system, ATPase and 561 yheG CDS COG2910 1049142 1049762 - [R] Putative NADH-flavin reductase yheF CDS NA 1049801 1049926 - NA 562 sspB CDS ROG7143 1050031 1050234 - NA 563 yheE CDS NA 1050443 1050661 - NA 564 spaD CDS ROG2819 1050811 1052172 - NA spaC CDS ROG8036 1052162 1053253 - NA 565 yheB CDS COG4399 1053520 1054653 + [S] Uncharacterized protein conserved in bacteria yheA CDS COG3679 1054746 1055099 + [S] Uncharacterized conserved protein 566 yhaZ CDS COG4335 1055143 1056216 - [L] DNA alkylation repair enzyme 567 yhaX CDS COG0561 1056702 1057568 + [R] Predicted hydrolases of the HAD superfamily 568 hemZ CDS COG0635 1057680 1059185 + [H] Coproporphyrinogen III oxidase and related Fe-S 569 khtU CDS COG0475 1059203 1060420 - [P] Kef-type K+ transport systems, membrane components khtT CDS COG0490 1060427 1060924 - [P] Putative regulatory, ligand-binding protein related to 570 khtS CDS NA 1060988 1061326 - NA 571 yhaR CDS COG1024 1061491 1062258 + [I] Enoyl-CoA hydratase/carnithine racemase 572 yhzD CDS ROG4456 1062279 1062464 - NA 573 yhaQ CDS COG4152 1062591 1063487 + [R] ABC-type uncharacterized transport system, ATPase component yhaP CDS COG1668 1063480 1064739 + [CP] ABC-type Na+ efflux pump, permease component yhaO CDS COG0420 1064846 1066072 + [L] DNA repair exonuclease sbcE CDS COG4717 1066077 1068968 + [S] Uncharacterized conserved protein yhaM CDS COG3481 1069042 1069986 + [R] Predicted HD-superfamily hydrolase 574 yhaL CDS ROG4193 1070111 1070323 + NA 575 prsA CDS COG0760 1070364 1071242 - [O] Parvulin-like peptidyl-prolyl isomerase 576 sscA CDS NA 1071402 1071488 + NA 577 sscB CDS NA 1071613 1071699 + NA 578 yhaJ CDS ROG3572 1072042 1072560 - NA 579 yhaI CDS NA 1072768 1073109 + NA 580 scoC CDS NA 1073106 1073717 - NA 581 yhaH CDS COG4980 1073895 1074251 - [R] Gas vesicle protein 582 yhzF CDS NA 1074381 1074572 + NA 583 trpP CDS ROG0986 1074646 1075164 - NA 584 serC CDS COG1932 1075289 1076368 - [HE] Phosphoserine aminotransferase 585 hinT CDS COG0537 1076515 1076952 - [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other 586 ecsA CDS COG4555 1077440 1078183 + [CP] ABC-type Na+ transport system, ATPase component ecsB CDS COG4473 1078176 1079402 + [U] Predicted ABC-type exoprotein transport system, permease ecsC CDS ROG0663 1079422 1080132 + NA 587 sndC CDS COG1473 1080150 1081340 - [R] Metal-dependent amidase/aminoacylase/carboxypeptidase 588 yhfA CDS ROG0358 1081413 1082804 - NA 589 yhgB CDS ROG5961 1082870 1083184 - NA hmoB CDS COG2329 1083229 1083729 - [R] Uncharacterized enzyme involved in biosynthesis of 590 pbpF CDS COG0744 1083851 1085995 + [M] Membrane carboxypeptidase (penicillin-binding protein) 591 hemE CDS COG0407 1086117 1087178 + [H] Uroporphyrinogen-III decarboxylase hemH CDS COG0276 1087250 1088182 + [H] Protoheme ferro-lyase (ferrochelatase) hemY CDS COG1232 1088197 1089609 + [H] Protoporphyrinogen oxidase 592 yhgD CDS COG1309 1089755 1090330 + [K] Transcriptional regulator yhgE CDS COG1511 1090401 1092728 + [S] Predicted membrane protein 593 fabHB CDS COG0332 1092770 1093747 - [I] 3-oxoacyl-[acyl-carrier-protein] synthase III 594 yhfC CDS COG4377 1093874 1094650 + [S] Predicted membrane protein 595 yhfE CDS COG1363 1095063 1096103 + [G] Cellulase M and related proteins yhfF CDS COG4405 1096116 1096523 + [S] Uncharacterized protein conserved in bacteria 596 gltT CDS COG1301 1096560 1097849 - [C] Na+/H+-dicarboxylate symporters 597 yhfH CDS NA 1098120 1098260 - NA 598 yhfI CDS COG1234 1098412 1099146 + [R] Metal-dependent hydrolases of the beta-lactamase superfamily lplJ CDS COG0095 1099159 1100154 + [H] Lipoate-protein ligase A 599 yhfK CDS COG0702 1100219 1100863 + [MG] Predicted nucleoside-diphosphate-sugar epimerases lcfB CDS COG0318 1100980 1102521 + [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 600 yhfM CDS ROG5991 1102560 1102955 - NA 601 yhfN CDS ROG5760 1103104 1104384 + NA 602 aprE CDS COG1404 1104423 1105568 - [O] Subtilisin-like serine proteases 603 yhfO CDS COG0454 1106003 1106452 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases yhfP CDS COG0604 1106524 1107516 + [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 604 yhfQ CDS COG4594 1107733 1108704 + [P] ABC-type Fe3+-citrate transport system, periplasmic component 605 phoE CDS COG0406 1108736 1109317 - [G] Fructose-2,6-bisphosphatase yhfS CDS COG0183 1109388 1110482 - [I] Acetyl-CoA acetyltransferase yhfT CDS COG0318 1110479 1111918 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II bioY CDS COG1268 1111925 1112485 - [R] Uncharacterized conserved protein 606 hemAT CDS COG0840 1112620 1113918 - [NT] Methyl-accepting chemotaxis protein 607 yhfW CDS COG0665 1114057 1115586 - [E] Glycine/D-amino acid oxidases (deaminating) 608 yhxC CDS COG1028 1115698 1116555 + [IQR] Dehydrogenases with different specificities (related to 609 yhzC CDS COG5582 1116583 1116816 - [S] Uncharacterized conserved protein 610 comK CDS COG4903 1117109 1117687 + [K] Genetic competence transcription factor 611 yhxD CDS COG1028 1117734 1118633 - [IQR] Dehydrogenases with different specificities (related to 612 yhjA CDS ROG0215 1118850 1119119 + NA 613 yhjB CDS COG0591 1119162 1120631 - [ER] Na+/proline symporter yhjC CDS ROG8459 1120628 1120828 - NA 614 yhjD CDS COG2886 1121036 1121398 - [S] Uncharacterized small protein 615 yhjE CDS COG0398 1121550 1122173 + [S] Uncharacterized conserved protein sipV CDS COG0681 1122175 1122681 + [U] Signal peptidase I 616 yhjG CDS COG0654 1122862 1124361 + [HC] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 617 yhjH CDS ROG2245 1124438 1124965 + NA 618 glcP CDS COG0738 1125123 1126328 - [G] Fucose permease ntdC CDS COG0673 1126400 1127452 - [R] Predicted dehydrogenases and related proteins ntdB CDS COG0561 1127466 1128314 - [R] Predicted hydrolases of the HAD superfamily ntdA CDS COG0399 1128286 1129611 - [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved 619 ntdR CDS COG1609 1129715 1130704 + [K] Transcriptional regulators 620 yhjN CDS COG3180 1130918 1132072 - [R] Putative ammonia monooxygenase 621 yhjO CDS NA 1132179 1133384 - NA 622 yhjP CDS COG4533 1133498 1135225 + [R] ABC-type uncharacterized transport system, periplasmic component 623 yhjQ CDS NA 1135255 1135581 - NA 624 yhjR CDS COG1633 1135699 1136136 - [S] Uncharacterized conserved protein 625 addB CDS COG3857 1136320 1139820 + [L] ATP-dependent nuclease, subunit B addA CDS COG1074 1139807 1143505 + [L] ATP-dependent exoDNAse (exonuclease V) beta subunit sbcD CDS COG0420 1143577 1144752 + [L] DNA repair exonuclease sbcC CDS COG0419 1144749 1148141 + [L] ATPase involved in DNA repair hlpB CDS COG1403 1148155 1148457 + [V] Restriction endonuclease 626 gerPF CDS NA 1148494 1148712 - NA gerPE CDS NA 1148744 1149145 - NA gerPD CDS NA 1149145 1149321 - NA gerPC CDS NA 1149318 1149935 - NA gerPB CDS NA 1149958 1150191 - NA gerPA CDS NA 1150206 1150427 - NA 627 pchI CDS NA 1150850 1151020 - NA 628 yisJ CDS COG5337 1151166 1152089 - [M] Spore coat assembly protein 629 mblK CDS COG0179 1152244 1153149 + [Q] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 630 yisL CDS ROG2967 1153265 1153621 + NA 631 wprA CDS COG1404 1153789 1156473 + [O] Subtilisin-like serine proteases 632 yisN CDS ROG8472 1156504 1157091 - NA 633 asnO CDS COG0367 1157237 1159081 + [E] Asparagine synthase (glutamine-hydrolyzing) 634 yizA CDS COG2318 1159211 1159690 - [S] Uncharacterized protein conserved in bacteria 635 farP CDS COG1562 1159922 1160746 + [I] Phytoene/squalene synthetase 636 yisQ CDS COG0534 1160776 1162143 - [V] Na+-driven multidrug efflux pump 637 yisR CDS COG2207 1162267 1163130 + [K] AraC-type DNA-binding domain-containing proteins iolQ CDS COG1609 1163148 1164161 + [K] Transcriptional regulators iolX CDS COG0673 1164370 1165398 + [R] Predicted dehydrogenases and related proteins 638 yisT CDS COG2318 1165449 1165958 - [S] Uncharacterized protein conserved in bacteria yisU CDS COG1279 1166008 1166670 - [R] Lysine efflux permease 639 yisV CDS COG1167 1166737 1168191 + [KE] Transcriptional regulators containing a DNA-binding HTH 640 yisX CDS COG1357 1168199 1168837 - [S] Uncharacterized low-complexity proteins 641 yisY CDS COG0596 1169043 1169849 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 642 yisZ CDS COG0529 1169877 1170476 - [P] Adenylylsulfate kinase and related kinases yitA CDS COG2046 1170473 1171642 - [P] ATP sulfurylase (sulfate adenylyltransferase) yitB CDS COG0175 1171755 1172465 - [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase 643 slpH CDS COG2045 1172650 1173336 + [HR] Phosphosulfolactate phosphohydrolase and related enzymes slpS CDS COG1809 1173333 1174091 + [S] Uncharacterized conserved protein 644 yitE CDS COG1284 1174136 1174765 - [S] Uncharacterized conserved protein 645 yitF CDS COG4948 1174861 1175976 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of yitG CDS COG0477 1175985 1177253 - [GEPR] Permeases of the major facilitator superfamily yitH CDS COG0454 1177365 1178213 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases yitI CDS COG0454 1178218 1178667 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases samT CDS COG0646 1178757 1180595 - [E] Methionine synthase I (cobalamin-dependent), methyltransferase domain 646 yitK CDS COG1666 1180909 1181400 - [S] Uncharacterized protein conserved in bacteria 647 yitL CDS COG2996 1181499 1182395 + [S] Uncharacterized protein conserved in bacteria 648 yitM CDS ROG5660 1182448 1183032 - NA yitO CDS ROG4932 1183029 1183958 - NA yitP CDS NA 1183943 1184479 - NA 649 yizB CDS COG1695 1184657 1185004 + [K] Predicted transcriptional regulators yitQ CDS NA 1185001 1185588 + NA yitR CDS NA 1185608 1185901 + NA 650 nprB CDS COG3227 1186037 1187653 + [E] Zinc metalloprotease (elastase) 651 fakBB CDS COG1307 1187700 1188551 - [S] Uncharacterized protein conserved in bacteria 652 yitT CDS COG1284 1188689 1189531 + [S] Uncharacterized conserved protein 653 ipi CDS ROG5896 1189646 1190005 + NA 654 yizC CDS NA 1190036 1190233 - NA 655 ribZC CDS COG0561 1190490 1191302 - [R] Predicted hydrolases of the HAD superfamily 656 yitV CDS COG1073 1191423 1192190 + [R] Hydrolases of the alpha/beta superfamily 657 yitW CDS COG2151 1192254 1192562 + [R] Predicted metal-sulfur cluster biosynthetic enzyme 658 yitY CDS COG0277 1192858 1194288 + [C] FAD/FMN-containing dehydrogenases yitZ CDS NA 1194333 1194827 + NA 659 argC CDS COG0002 1195034 1196071 + [E] Acetylglutamate semialdehyde dehydrogenase argJ CDS COG1364 1196091 1197311 + [E] N-acetylglutamate synthase (N-acetylornithine aminotransferase) argB CDS COG0548 1197326 1198102 + [E] Acetylglutamate kinase argD CDS COG4992 1198099 1199256 + [E] Ornithine/acetylornithine aminotransferase carA CDS COG0505 1199327 1200388 + [EF] Carbamoylphosphate synthase small subunit carB CDS COG0458 1200381 1203473 + [EF] Carbamoylphosphate synthase large subunit (split gene argF CDS COG0078 1203461 1204420 + [E] Ornithine carbamoyltransferase 660 yjzC CDS ROG4582 1204506 1204685 + NA 661 yjzD CDS NA 1204731 1204916 - NA 662 yjaU CDS ROG4539 1205165 1205899 + NA 663 yjaV CDS NA 1205981 1206538 + NA 664 med CDS COG1744 1206629 1207582 + [R] Uncharacterized ABC-type transport system, periplasmic component/surface comZ CDS ROG6689 1207597 1207788 + NA 665 yjzB CDS NA 1207818 1208057 - NA 666 fabHA CDS COG0332 1208222 1209160 + [I] 3-oxoacyl-[acyl-carrier-protein] synthase III fabF CDS COG0304 1209183 1210424 + [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase 667 yjaZ CDS COG5504 1210500 1211285 + [O] Predicted Zn-dependent protease 668 appD CDS COG0444 1211477 1212463 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component appF CDS COG4608 1212460 1213449 + [E] ABC-type oligopeptide transport system, ATPase component appAn CDS COG0747 1213537 1214001 + [E] ABC-type dipeptide transport system, periplasmic component appAc CDS COG0747 1214001 1215167 + [E] ABC-type dipeptide transport system, periplasmic component appB CDS COG0601 1215243 1216193 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components appC CDS COG1173 1216210 1217121 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 669 yjbA CDS ROG3488 1217326 1218078 + NA 670 trpS CDS COG0180 1218113 1219105 - [J] Tryptophanyl-tRNA synthetase 671 oppA CDS COG4166 1219849 1221486 + [E] ABC-type oligopeptide transport system, periplasmic component oppB CDS COG0601 1221594 1222529 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppC CDS COG1173 1222533 1223450 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components oppD CDS COG0444 1223455 1224531 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component oppF CDS COG4608 1224533 1225450 + [E] ABC-type oligopeptide transport system, ATPase component 672 yjbB CDS COG2261 1225557 1226774 + [S] Predicted membrane protein 673 yjbC CDS ROG5739 1226938 1227516 + NA 674 spxA CDS COG1393 1227697 1228092 + [P] Arsenate reductase and related proteins, glutaredoxin 675 yjbE CDS NA 1228135 1228791 - NA 676 cds-SOX90547.1 CDS NA 1228961 1229101 + NA mecA CDS COG4862 1229068 1229724 + [OTN] Negative regulator of genetic competence, sporulation 677 cds-SOX90548.1 CDS ROG1561 1229719 1229841 - NA 678 coiA CDS COG4469 1229915 1231036 + [R] Competence protein pepF CDS COG1164 1231083 1233095 + [E] Oligoendopeptidase F 679 yizD CDS ROG7068 1233133 1233300 - NA 680 spxH CDS COG2761 1233614 1234513 - [Q] Predicted dithiol-disulfide isomerase involved in polyketide yjbI CDS COG2346 1234510 1234908 - [R] Truncated hemoglobins 681 cwlQ CDS COG0741 1235163 1235708 - [M] Soluble lytic murein transglycosylase and related 682 yjbK CDS COG4116 1235912 1236484 - [S] Uncharacterized protein conserved in bacteria 683 yjbL CDS ROG2157 1236609 1236977 + NA relP CDS COG2357 1237006 1237641 + [S] Uncharacterized protein conserved in bacteria ppnKA CDS COG0061 1237660 1238460 + [G] Predicted sugar kinase yjbO CDS COG0564 1238523 1239374 + [J] Pseudouridylate synthases, 23S RNA-specific 684 prpE CDS ROG0146 1239387 1240121 - NA 685 kefQ CDS COG0569 1240356 1242200 + [P] K+ transport systems, NAD-binding component 686 tenA CDS COG0819 1242449 1243159 + [K] Putative transcription activator tenI CDS COG0352 1243134 1243751 + [H] Thiamine monophosphate synthase thiO CDS COG0665 1243735 1244844 + [E] Glycine/D-amino acid oxidases (deaminating) thiS CDS COG2104 1244844 1245044 + [H] Sulfur transfer protein involved in thiamine thiG CDS COG2022 1245041 1245811 + [H] Uncharacterized enzyme of thiazole biosynthesis thiF CDS COG0476 1245808 1246818 + [H] Dinucleotide-utilizing enzymes involved in molybdopterin and thiD CDS COG0351 1246837 1247652 + [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 687 fabI CDS COG0623 1247788 1248564 + [I] Enoyl-[acyl-carrier-protein] reductase (NADH) 688 cotO CDS COG0779 1248665 1249348 + [S] Uncharacterized protein conserved in bacteria 689 cotZ CDS NA 1249442 1249888 - NA 690 cotY CDS NA 1250016 1250504 - NA 691 cotX CDS ROG4021 1250656 1251174 - NA 692 cotW CDS ROG1311 1251273 1251590 - NA cotV CDS ROG4021 1251631 1252017 - NA 693 yjcA CDS ROG1958 1252177 1252533 + NA 694 yjzK CDS COG1196 1252815 1253021 + [D] Chromosome segregation ATPases yjcB CDS NA 1252858 1253073 + NA yjcZ CDS NA 1253103 1253252 + NA 695 spoVIF CDS ROG3625 1253385 1253639 + NA 696 yjcD CDS COG0210 1253713 1255992 - [L] Superfamily I DNA and RNA helicases 697 yjzE CDS ROG1246 1256109 1256363 + NA 698 yjcF CDS COG0454 1256436 1256858 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases yjcG CDS COG1514 1256862 1257377 - [J] 2'-5' RNA ligase yjcH CDS COG2382 1257414 1258136 - [P] Enterochelin esterase and related enzymes 699 metI CDS COG0626 1258492 1259613 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases metC CDS COG0626 1259606 1260778 + [E] Cystathionine beta-lyases/cystathionine gamma-synthases 700 yjcK CDS COG1670 1260811 1261356 - [J] Acetyltransferases, including N-acetylases of ribosomal proteins yjcL CDS COG5505 1261426 1262616 - [S] Predicted integral membrane protein 701 trnSL-Val2 tRNA NA 1262789 1262861 + NA 702 yjcM CDS ROG1437 1263702 1264931 - NA 703 yjcN CDS NA 1265057 1265377 + NA 704 yjzF CDS COG5208 1265530 1265661 + [K] CCAAT-binding factor, subunit C yjzG CDS NA 1265677 1265850 + NA yjcO CDS ROG2381 1265887 1266348 + NA 705 yjcP CDS ROG5073 1266614 1267117 + NA yjcQ CDS COG1695 1267129 1267413 + [K] Predicted transcriptional regulators 706 yjcR CDS COG5484 1267574 1268101 + [S] Uncharacterized conserved protein 707 yjcS CDS COG1359 1268275 1268592 + [S] Uncharacterized conserved protein 708 yjdA CDS COG1028 1268829 1269584 + [IQR] Dehydrogenases with different specificities (related to 709 yjdB CDS COG5492 1269733 1270080 - [N] Bacterial surface proteins containing Ig-like domains 710 manR CDS COG3711 1270631 1272577 + [K] Transcriptional antiterminator manP CDS COG1299 1272725 1274677 + [G] Phosphotransferase system, fructose-specific IIC component manA CDS COG1482 1274692 1275639 + [G] Phosphomannose isomerase 711 yjdF CDS ROG0412 1275809 1276291 + NA 712 yjdG CDS COG1670 1276337 1276843 - [J] Acetyltransferases, including N-acetylases of ribosomal proteins 713 yjdH CDS NA 1277062 1277457 - NA 714 trnE CDS COG2606 1277686 1278165 + [S] Uncharacterized conserved protein 715 yjzH CDS NA 1278205 1278399 - NA 716 yjdJ CDS ROG3747 1278565 1278894 - NA 717 ctaO CDS COG0109 1279514 1280503 - [O] Polyprenyltransferase (cytochrome oxidase assembly factor) 718 cotT CDS NA 1280626 1280874 - NA 719 pdaC CDS COG0726 1281128 1282531 + [G] Predicted xylanase/chitin deacetylase 720 yjfA CDS ROG8435 1282571 1283044 - NA 721 yjfB CDS NA 1283169 1283336 - NA 722 yjfC CDS COG5504 1283463 1284362 + [O] Predicted Zn-dependent protease 723 yjgA CDS ROG1226 1284371 1284769 - NA 724 yjgB CDS ROG3723 1284870 1285445 - NA 725 yjgC CDS COG3383 1285591 1288548 + [R] Uncharacterized anaerobic dehydrogenase yjgD CDS COG2427 1288541 1289101 + [S] Uncharacterized conserved protein 726 yjhA CDS ROG1691 1289298 1289939 + NA 727 yjhB CDS COG1051 1290018 1290644 + [F] ADP-ribose pyrophosphatase 728 yjiA CDS NA 1290675 1290953 - NA 729 cypE CDS COG2124 1291344 1292534 + [Q] Cytochrome P450 ppuG CDS COG1819 1292557 1293735 + [GC] Glycosyl transferases, related to UDP-glucuronosyltransferase 730 yjzI CDS NA 1293776 1293964 - NA 731 yjjA CDS COG1587 1294138 1294950 + [H] Uroporphyrinogen-III synthase 732 yjkA CDS COG0390 1294996 1295748 - [R] ABC-type uncharacterized transport system, permease component yjkB CDS COG4619 1295748 1296500 - [R] ABC-type uncharacterized transport system, ATPase component 733 yjlA CDS ROG4286 1296620 1297594 - NA 734 yjlB CDS COG4297 1297726 1298223 + [S] Uncharacterized protein containing double-stranded beta helix 735 yjlC CDS COG2427 1298612 1299034 + [S] Uncharacterized conserved protein ndh CDS COG1252 1299074 1300252 + [C] NADH dehydrogenase, FAD-containing subunit 736 uxaC CDS COG1904 1300450 1301871 + [G] Glucuronate isomerase exuM CDS COG2211 1301939 1303318 + [G] Na+/melibiose symporter and related transporters yjmC CDS COG2055 1303423 1304436 + [C] Malate/L-lactate dehydrogenases yjmD CDS COG1063 1304442 1305461 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases uxuA CDS COG1312 1305486 1306565 + [G] D-mannonate dehydratase uxuB CDS COG1028 1306562 1307398 + [IQR] Dehydrogenases with different specificities (related to exuT CDS COG2271 1307446 1308714 + [G] Sugar phosphate permease exuR CDS COG1609 1308802 1309803 + [K] Transcriptional regulators uxaB CDS COG0246 1309880 1311322 + [G] Mannitol-1-phosphate/altronate dehydrogenases uxaA CDS COG2721 1311319 1312812 + [G] Altronate dehydratase 737 yjnA CDS COG0730 1312851 1313615 - [R] Predicted permeases 738 yjoA CDS COG2318 1313840 1314304 - [S] Uncharacterized protein conserved in bacteria 739 yjoB CDS COG0464 1314453 1315724 + [O] ATPases of the AAA+ class rapA CDS COG0457 1315869 1317005 + [R] FOG: TPR repeat phrA CDS NA 1316995 1317129 + NA 740 yjpA CDS COG2350 1317157 1317414 - [S] Uncharacterized protein conserved in bacteria 741 xlyB CDS COG5632 1317535 1318488 + [M] N-acetylmuramoyl-L-alanine amidase 742 yjqA CDS ROG0061 1318528 1318905 - NA 743 pghB CDS COG4195 1319011 1319613 + [R] Phage-related replication protein 744 xpdC CDS COG3546 1319690 1320526 + [P] Mn-containing catalase 745 xkdA CDS ROG6406 1320570 1321166 - NA 746 xre CDS COG2932 1321329 1321670 - [K] Predicted transcriptional regulator 747 yjzJ CDS NA 1321848 1322027 + NA xkdB CDS ROG1183 1322014 1322850 + NA xkdC CDS COG1484 1322750 1323550 + [L] DNA replication protein ykzK CDS NA 1323550 1323717 + NA 748 xkdD CDS NA 1323802 1324152 + NA xtrA CDS NA 1324149 1324355 + NA 749 xpf CDS COG1595 1324471 1324980 + [K] DNA-directed RNA polymerase specialized sigma subunit, 750 xtmA CDS COG3728 1325096 1325893 + [L] Phage terminase, small subunit xtmB CDS COG1783 1325890 1327191 + [R] Phage terminase large subunit xkdE CDS COG5518 1327195 1328682 + [R] Bacteriophage capsid portal protein xkdF CDS NA 1328702 1329529 + NA xkdG CDS ROG3784 1329555 1330490 + NA ykzL CDS NA 1330512 1330895 + NA xkdH CDS NA 1330892 1331248 + NA xkdI CDS ROG3947 1331245 1331730 + NA xkdJ CDS ROG2798 1331743 1332183 + NA ykzM CDS NA 1332187 1332405 + NA xkdK CDS ROG0742 1332402 1333802 + NA xkdM CDS ROG1260 1333804 1334247 + NA 751 xkdN CDS ROG2256 1334339 1334785 + NA xkzB CDS NA 1334815 1334964 + NA xkdO CDS COG3953 1334966 1338964 + [R] SLT domain proteins xkdP CDS COG1652 1338957 1339616 + [S] Uncharacterized protein containing LysM domain xkdQ CDS ROG1377 1339632 1340609 + NA xkdR CDS ROG5517 1340609 1340875 + NA xkdS CDS ROG1230 1340932 1341357 + NA xkdT CDS COG3299 1341350 1342396 + [S] Uncharacterized homolog of phage Mu protein xkdU CDS ROG2742 1342380 1342958 + NA xkzA CDS NA 1342955 1343227 + NA xkdV CDS NA 1343230 1345293 + NA xkdW CDS NA 1345305 1345634 + NA xkdX CDS NA 1345631 1345795 + NA xepA CDS NA 1345839 1346678 + NA xhlA CDS ROG3733 1346731 1347000 + NA xhlB CDS ROG7335 1347013 1347276 + NA xlyA CDS COG5632 1347289 1348182 + [M] N-acetylmuramoyl-L-alanine amidase 752 spoIISC CDS NA 1348219 1348356 - NA 753 spoIISB CDS NA 1348442 1348612 - NA spoIISA CDS NA 1348612 1349358 - NA 754 pitB CDS COG0306 1349468 1350469 - [P] Phosphate/sulphate permeases ykaA CDS COG1392 1350482 1351099 - [P] Phosphate transport regulator (distant homolog of 755 steT CDS COG0531 1351375 1352691 - [E] Amino acid transporters 756 mhqA CDS COG0346 1353080 1354030 + [E] Lactoylglutathione lyase and related lyases 757 cds-SOX90552.1 CDS NA 1354131 1354277 + NA ykcB CDS COG1807 1354285 1356435 + [M] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of ykcC CDS COG0463 1356447 1357418 + [M] Glycosyltransferases involved in cell wall biogenesis 758 htrA CDS COG0265 1357936 1359285 - [O] Trypsin-like serine proteases, typically periplasmic, contain 759 proCC CDS COG0345 1359454 1360272 + [E] Pyrroline-5-carboxylate reductase 760 dppA CDS COG2362 1360401 1361225 + [E] D-aminopeptidase dppB CDS COG0601 1361242 1362168 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppC CDS COG1173 1362174 1363136 + [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components dppD CDS COG0444 1363141 1364148 + [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component dppE CDS COG4166 1364151 1365800 + [E] ABC-type oligopeptide transport system, periplasmic component ldcA CDS COG1619 1365888 1366847 + [V] Uncharacterized proteins, homologs of microcin C7 aeeB CDS COG4948 1366844 1367944 + [MR] L-alanine-DL-glutamate epimerase and related enzymes of eepC CDS COG0791 1367941 1368831 + [M] Cell wall-associated hydrolases (invasion-associated proteins) ykfD CDS COG4608 1368844 1369833 + [E] ABC-type oligopeptide transport system, ATPase component 761 pgl CDS COG2706 1369876 1370925 - [G] 3-carboxymuconate cyclase 762 ddaH CDS COG1834 1371015 1371875 - [E] N-Dimethylarginine dimethylaminohydrolase 763 ykhA CDS COG1607 1372035 1372553 + [I] Acyl-CoA hydrolase 764 hmpA CDS COG1017 1372792 1373991 + [C] Hemoglobin-like flavoprotein 765 ykzH CDS NA 1374068 1374292 - NA 766 ykjA CDS COG2323 1374437 1375168 + [S] Predicted membrane protein 767 ykkA CDS ROG5015 1375260 1375787 + NA ykkB CDS COG1670 1375777 1376295 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins 768 gdnC CDS COG2076 1376517 1376855 + [P] Membrane transporters of cations and cationic gdnD CDS COG2076 1376855 1377172 + [P] Membrane transporters of cations and cationic 769 purU CDS COG0788 1377243 1378145 + [F] Formyltetrahydrofolate hydrolase proB CDS COG0263 1378496 1379593 + [E] Glutamate 5-kinase proA CDS COG0014 1379605 1380852 + [E] Gamma-glutamyl phosphate reductase 770 ohrA CDS COG1764 1380978 1381403 + [O] Predicted redox protein, regulator of disulfide 771 ohrR CDS COG1846 1381434 1381877 - [K] Transcriptional regulators 772 ohrB CDS COG1764 1382020 1382430 + [O] Predicted redox protein, regulator of disulfide ykzN CDS NA 1382457 1382627 + NA 773 guaN CDS COG0590 1382677 1383147 - [FJ] Cytosine/adenosine deaminases 774 metE CDS COG0620 1383320 1385608 - [E] Methionine synthase II (cobalamin-independent) 775 ispA CDS COG1404 2525789 2526679 - [O] Subtilisin-like serine proteases 776 rsbRB CDS COG1366 1387206 1388039 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma 777 thiX CDS COG0619 1388070 1388834 - [P] ABC-type cobalt transport system, permease component thiW CDS COG1122 1388809 1390452 - [P] ABC-type cobalt transport system, ATPase component thiV CDS COG4721 1390439 1391038 - [S] Predicted membrane protein thiU CDS ROG6550 1391040 1391642 - NA 778 ykoG CDS COG0745 1391953 1392639 + [TK] Response regulators consisting of a CheY-like ykoH CDS COG0642 1392643 1394007 + [T] Signal transduction histidine kinase ykoI CDS COG3212 1394004 1394684 + [S] Predicted membrane protein ykoJ CDS COG3212 1394776 1395288 + [S] Predicted membrane protein 779 ykzD CDS NA 1395371 1395508 + NA 780 mgtE CDS COG2239 1396013 1397368 + [P] Mg/Co/Ni transporter MgtE (contains CBS domain) 781 tnrA CDS COG0789 1397411 1397743 - [K] Predicted transcriptional regulators 782 ykzB CDS NA 1397938 1398093 + NA 783 ykoL CDS NA 1398181 1398363 + NA 784 ykoM CDS COG1846 1398496 1398960 + [K] Transcriptional regulators 785 ykoN CDS COG0381 1398975 1400096 - [M] UDP-N-acetylglucosamine 2-epimerase 786 ykoP CDS COG5604 1400188 1400739 + [S] Uncharacterized conserved protein 787 ykoQ CDS COG1408 1400767 1401579 - [R] Predicted phosphohydrolases 788 ykoS CDS ROG2291 1401772 1403466 + NA ykoT CDS COG0463 1403479 1404492 + [M] Glycosyltransferases involved in cell wall biogenesis 789 ligD CDS COG3285 1404518 1406353 - [L] Predicted eukaryotic-type DNA primase ligV CDS COG1273 1406357 1407292 - [S] Uncharacterized conserved protein dgcW CDS COG2200 1407329 1409731 - [T] FOG: EAL domain 790 ykoX CDS COG0586 1409912 1410577 + [S] Uncharacterized membrane-associated protein ykoY CDS COG0861 1410654 1411628 + [P] Membrane protein TerC, possibly involved in 791 sigI CDS ROG1628 1411892 1412647 + NA rsgI CDS ROG1474 1412644 1413789 + NA 792 sspD CDS ROG7143 1413800 1413994 - NA 793 htpK CDS ROG2159 1414125 1414826 - NA 794 htpX CDS COG0501 1414997 1415893 + [O] Zn-dependent protease with chaperone function 795 ktrD CDS COG0168 1416067 1417416 + [P] Trk-type K+ transport systems, membrane components 796 ykzP CDS NA 1417561 1417716 + NA ykzE CDS NA 1417719 1417895 + NA 797 ykrP CDS COG3594 1417938 1418960 - [G] Fucose 4-O-acetylase and related acetyltransferases 798 kinE CDS COG2202 1419213 1421429 + [T] FOG: PAS/PAC domain ogt CDS COG0350 1421426 1421923 + [L] Methylated DNA-protein cysteine methyltransferase 799 cds-SOX90553.1 CDS NA 1422013 1422138 + NA 800 mtnA CDS COG0182 1422172 1423233 - [J] Predicted translation initiation factor 2B subunit, mtnK CDS COG4857 1423241 1424434 - [R] Predicted kinase 801 mtnU CDS COG0388 1424767 1425546 - [R] Predicted amidohydrolase 802 mtnE CDS COG0436 1425641 1426837 + [E] Aspartate/tyrosine/aromatic aminotransferase 803 mtnW CDS COG1850 1427061 1428278 + [G] Ribulose 1,5-bisphosphate carboxylase, large subunit mtnX CDS COG4359 1428275 1428982 + [E] Uncharacterized conserved protein, possibly involved in mtnB CDS COG0235 1428940 1429569 + [G] Ribulose-5-phosphate 4-epimerase and related epimerases and mtnD CDS COG1791 1429584 1430120 + [S] Uncharacterized conserved protein, contains double-stranded beta-helix 804 ykvA CDS COG3339 1430161 1430481 - [S] Uncharacterized conserved protein 805 spo0E CDS NA 1430684 1430941 + NA 806 eag CDS ROG4090 1431027 1431458 + NA 807 kinD CDS COG3852 1431486 1433006 - [T] Signal transduction histidine kinase, nitrogen specific 808 mhqR CDS COG1846 1433199 1433636 + [K] Transcriptional regulators 809 motB CDS COG1360 1433676 1434461 - [N] Flagellar motor protein motA CDS COG1291 1434433 1435245 - [N] Flagellar motor component 810 clpE CDS COG0542 1435628 1437727 - [O] ATPases with chaperone activity, ATP-binding subunit 811 ykvI CDS COG3949 1438092 1439135 + [S] Uncharacterized membrane protein 812 queC CDS COG0603 1439448 1440107 + [R] Predicted PP-loop superfamily ATPase queD CDS COG0720 1440100 1440549 + [H] 6-pyruvoyl-tetrahydropterin synthase queE CDS COG0602 1440542 1441273 + [O] Organic radical activating enzymes queF CDS COG0780 1441291 1441788 + [R] Enzyme related to GTP cyclohydrolase I 813 ykvN CDS COG1733 1442347 1442703 - [K] Predicted transcriptional regulators 814 ykvO CDS COG1028 1442872 1443618 + [IQR] Dehydrogenases with different specificities (related to 815 ykvP CDS COG4641 1444099 1445298 + [S] Uncharacterized protein conserved in bacteria ykzQ CDS COG1388 1445314 1445541 + [M] FOG: LysM repeat ykvQ CDS COG3858 1445638 1446336 + [R] Predicted glycosyl hydrolase ykzR CDS COG3858 1446317 1446568 + [R] Predicted glycosyl hydrolase 816 ykvR CDS NA 1447251 1447541 + NA 817 ykvS CDS COG4873 1447662 1447847 - [S] Uncharacterized protein conserved in bacteria 818 ykzS CDS ROG7491 1448013 1448207 + NA 819 ykvT CDS COG3773 1448506 1449132 + [M] Cell wall hydrolyses involved in spore 820 ykvU CDS COG2244 1449250 1450587 + [R] Membrane protein involved in the export stoA CDS COG0526 1450638 1451135 + [OC] Thiol-disulfide isomerase and thioredoxins 821 pfeT CDS COG2217 1451371 1453284 + [P] Cation transport ATPase 822 papB CDS COG0006 1453691 1454782 + [E] Xaa-Pro aminopeptidase 823 ykvZ CDS COG1609 1455064 1456029 + [K] Transcriptional regulators glcT CDS COG3711 1456092 1456958 + [K] Transcriptional antiterminator ptsG CDS COG1263 1457187 1459286 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ptsH CDS COG1925 1459384 1459650 + [G] Phosphotransferase system, HPr-related proteins ptsI CDS COG1080 1459650 1461362 + [G] Phosphoenolpyruvate-protein kinase (PTS system EI component 824 splA CDS NA 1461453 1461692 + NA 825 splB CDS COG1533 1461770 1462798 + [L] DNA repair photolyase 826 ykwB CDS COG0456 1462813 1463493 - [R] Acetyltransferases 827 mcpC CDS COG2972 1463628 1465595 + [T] Predicted signal transduction protein with a ohaC CDS COG2084 1465733 1466599 + [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 828 ykwD CDS COG2340 1466638 1467411 - [S] Uncharacterized protein with SCP/PR1 domains 829 pbpH CDS COG0768 1467748 1469862 + [M] Cell division protein FtsI/penicillin-binding protein 2 830 kinA CDS COG4191 1470026 1471846 + [T] Signal transduction histidine kinase regulating C4-dicarboxylate 831 dapX CDS COG0436 1471857 1473038 - [E] Aspartate/tyrosine/aromatic aminotransferase 832 ykzT CDS NA 1473240 1473401 - NA 833 cheV CDS COG0835 1473605 1474516 + [NT] Chemotaxis signal transduction protein 834 kre CDS ROG6256 1474560 1475024 - NA 835 ykuC CDS NA 1475150 1476442 - NA 836 ltdD CDS COG1376 1476518 1477012 - [S] Uncharacterized protein conserved in bacteria 837 ppeE CDS COG1408 1477069 1477929 - [R] Predicted phosphohydrolases 838 fadH CDS COG1028 1478072 1478836 + [IQR] Dehydrogenases with different specificities (related to 839 ykuG CDS COG3409 1479137 1480867 + [M] Putative peptidoglycan-binding domain-containing protein 840 ykzU CDS NA 1480933 1481451 + NA 841 ykuH CDS NA 1481547 1482095 + NA 842 ykuI CDS ROG1476 1482248 1483471 + NA 843 ykuJ CDS COG4703 1484117 1484356 + [S] Uncharacterized protein conserved in bacteria ykuK CDS COG1978 1484466 1484984 + [S] Uncharacterized protein conserved in bacteria 844 abbA CDS NA 1485118 1485315 + NA 845 ykuL CDS ROG3518 1485453 1485896 + NA 846 ccpC CDS COG0583 1486045 1486926 + [K] Transcriptional regulator 847 fldN CDS COG0716 1487038 1487514 + [C] Flavodoxins ykuO CDS COG4447 1487504 1488397 + [R] Uncharacterized protein related to plant photosystem fldP CDS COG0716 1488413 1488868 + [C] Flavodoxins dapH CDS COG2171 1488973 1489683 + [E] Tetrahydrodipicolinate N-succinyltransferase dapI CDS COG1473 1489753 1490877 + [R] Metal-dependent amidase/aminoacylase/carboxypeptidase ykuS CDS ROG0818 1490939 1491184 + NA 848 mscT CDS COG0668 1491221 1492024 - [M] Small-conductance mechanosensitive channel 849 ahpA CDS COG0450 1492261 1492803 + [O] Peroxiredoxin 850 ykuV CDS ROG1694 1492875 1493321 + NA 851 rok CDS NA 1493787 1494362 + NA 852 sppO CDS NA 1494403 1495368 - NA 853 mobA CDS COG0746 1495505 1496104 + [H] Molybdopterin-guanine dinucleotide biosynthesis protein A moeB CDS COG0476 1496155 1497174 + [H] Dinucleotide-utilizing enzymes involved in molybdopterin and moeA CDS COG0303 1497192 1498484 + [H] Molybdopterin biosynthesis enzyme mobB CDS COG1763 1498445 1498966 + [H] Molybdopterin-guanine dinucleotide biosynthesis protein moaE CDS COG0314 1498966 1499439 + [H] Molybdopterin converting factor, large subunit moaD CDS COG1977 1499432 1499665 + [H] Molybdopterin converting factor, small subunit 854 yknU CDS COG1132 1499889 1501646 + [V] ABC-type multidrug transport system, ATPase and yknV CDS COG1132 1501658 1503472 + [V] ABC-type multidrug transport system, ATPase and 855 skiW CDS ROG7880 1503582 1504277 + NA skiX CDS COG0845 1504282 1505415 + [M] Membrane-fusion protein skiY CDS COG1136 1505416 1506108 + [V] ABC-type antimicrobial peptide transport system, ATPase skiZ CDS COG0577 1506105 1507298 + [V] ABC-type antimicrobial peptide transport system, permease 856 fruR CDS COG1349 1507578 1508333 + [KG] Transcriptional regulators of sugar metabolism fruK CDS COG1105 1508330 1509241 + [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase fruA CDS COG1299 1509256 1511163 + [G] Phosphotransferase system, fructose-specific IIC component 857 sipT CDS COG0681 1511308 1511889 + [U] Signal peptidase I 858 ykoA CDS COG1266 1511923 1512192 - [R] Predicted metal-dependent membrane protease 859 ykpA CDS COG0488 1512373 1513995 + [R] ATPase components of ABC transporters with panE CDS COG1893 1577409 1578305 + [H] Ketopantoate reductase 860 ampS CDS COG2309 1514997 1516229 - [E] Leucyl aminopeptidase (aminopeptidase T) 861 ykpC CDS ROG5972 1516339 1516473 - NA 862 mreBH CDS COG1077 1516574 1517581 - [D] Actin-like ATPase involved in cell morphogenesis 863 abhA CDS COG2002 1517865 1518143 + [K] Regulators of stationary/sporulation gene expression kinC CDS COG2202 1518333 1519619 + [T] FOG: PAS/PAC domain ykqA CDS COG3703 1519635 1520468 + [P] Uncharacterized protein involved in cation transport ktrC CDS COG0569 1520531 1521196 + [P] K+ transport systems, NAD-binding component 864 adeC CDS COG1001 1521351 1523084 + [F] Adenine deaminase 865 rnjA CDS COG0595 1523118 1524785 - [R] Predicted hydrolase of the metallo-beta-lactamase superfamily rnpZA CDS COG5503 1524791 1525000 - [S] Uncharacterized conserved small protein 866 ykrA CDS COG0561 1525386 1526159 + [R] Predicted hydrolases of the HAD superfamily 867 defB CDS COG0242 1526195 1526749 - [J] N-formylmethionyl-tRNA deformylase 868 ykzV CDS NA 1526859 1527017 - NA cds-CCQ48596.1 CDS NA 1526924 1527067 - NA 869 ykyA CDS ROG2757 1527231 1527902 + NA 870 pdhA CDS COG1071 1528326 1529441 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, pdhB CDS COG0022 1529445 1530422 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, pdhC CDS COG0508 1530537 1531865 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) pdhD CDS COG1249 1531870 1533282 + [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) 871 slp CDS ROG1369 1533327 1533701 - NA 872 rgpA CDS NA 1534120 1534239 + NA 873 speA CDS COG1982 1534279 1535751 - [E] Arginine/lysine/ornithine decarboxylases 874 yktA CDS COG4476 1535936 1536202 + [S] Uncharacterized protein conserved in bacteria 875 yktB CDS COG4493 1536235 1536873 - [S] Uncharacterized protein conserved in bacteria 876 ykzI CDS ROG4156 1537113 1537301 + NA 877 suhB CDS COG0483 1537441 1538238 + [G] Archaeal fructose-1,6-bisphosphatase and related enzymes of ykzC CDS COG0454 1538264 1538692 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 878 yktD CDS COG3315 1538770 1539684 - [Q] O-Methyltransferase involved in polyketide biosynthesis 879 nprE CDS COG3227 1540036 1541601 - [E] Zinc metalloprotease (elastase) 880 ylaA CDS ROG5003 1541886 1543826 + NA ylaB CDS NA 1543816 1544085 + NA sigP CDS COG1595 1544085 1544606 + [K] DNA-directed RNA polymerase specialized sigma subunit, sigQ CDS COG5660 1544603 1544896 + [S] Predicted integral membrane protein 881 ylaE CDS ROG2175 1544936 1545547 - NA 882 ylaF CDS ROG1493 1545820 1546008 - NA 883 bipA CDS COG1217 1546121 1547959 + [T] Predicted membrane GTPase involved in stress ylaH CDS ROG3740 1548016 1548333 + NA 884 ylaI CDS COG4896 1548389 1548598 - [S] Uncharacterized protein conserved in bacteria 885 ylaJ CDS ROG0568 1548681 1549310 - NA 886 ylaK CDS COG1875 1549465 1550793 + [T] Predicted ATPase related to phosphate starvation-inducible 887 ylaL CDS ROG1738 1550797 1551282 - NA 888 glsB CDS COG2066 1551385 1552314 + [E] Glutaminase 889 ylaN CDS COG4838 1552412 1552693 + [S] Uncharacterized protein conserved in bacteria 890 ftsW CDS COG0772 1552899 1554110 + [D] Bacterial cell division membrane protein 891 pycA CDS COG1038 1554185 1557631 + [C] Pyruvate carboxylase 892 ctaA CDS COG1612 1558034 1558954 - [O] Uncharacterized protein required for cytochrome oxidase 893 ctaB CDS COG0109 1559309 1560226 + [O] Polyprenyltransferase (cytochrome oxidase assembly factor) ctaC CDS COG1622 1560466 1561536 + [C] Heme/copper-type cytochrome/quinol oxidases, subunit 2 ctaD CDS COG0843 1561569 1563437 + [C] Heme/copper-type cytochrome/quinol oxidases, subunit 1 ctaE CDS COG1845 1563437 1564060 + [C] Heme/copper-type cytochrome/quinol oxidase, subunit 3 ctaF CDS COG3125 1564063 1564395 + [C] Heme/copper-type cytochrome/quinol oxidase, subunit 4 ctaG CDS COG3336 1564422 1565315 + [S] Predicted membrane protein 894 ylbA CDS ROG3464 1565347 1565709 - NA 895 ylbB CDS COG0517 1565849 1566295 + [R] FOG: CBS domain 896 ylbC CDS COG2340 1566379 1567419 + [S] Uncharacterized protein with SCP/PR1 domains 897 ylbD CDS ROG3755 1567651 1568049 + NA ylbE CDS ROG3316 1568065 1568304 + NA 898 ricF CDS COG3679 1568420 1568869 + [S] Uncharacterized conserved protein ylbG CDS COG4471 1568924 1569196 + [S] Uncharacterized protein conserved in bacteria 899 rsmD CDS COG0742 1569519 1570073 + [L] N6-adenine-specific methylase coaD CDS COG0669 1570078 1570563 + [H] Phosphopantetheine adenylyltransferase 900 spoVV CDS COG3314 1570574 1571800 - [S] Uncharacterized protein conserved in bacteria 901 ylbK CDS COG1752 1571981 1572763 + [R] Predicted esterase of the alpha-beta hydrolase ylbL CDS COG3480 1572765 1573790 + [T] Predicted secreted protein containing a PDZ 902 ylbM CDS COG1323 1573807 1575054 - [R] Predicted nucleotidyltransferase ylzH CDS NA 1575051 1575236 - NA 903 ylbN CDS COG1399 1575264 1575782 + [R] Predicted metal-binding, possibly nucleic acid-binding protein rpmF CDS COG0333 1575804 1575983 + [J] Ribosomal protein L32 904 gerR CDS ROG2785 1576129 1576710 + NA 905 ylbP CDS COG0454 1576767 1577249 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 906 panE_2 COG1893 [H] Ketopantoate reductase bshC CDS COG4365 1578376 1579995 + [S] Uncharacterized protein conserved in bacteria 907 mraZ CDS COG2001 1580121 1580552 + [S] Uncharacterized protein conserved in bacteria rsmH CDS COG0275 1580622 1581557 + [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in cell ftsL CDS COG4839 1581597 1581950 + [D] Protein required for the initiation of pbpB CDS COG0768 1581947 1584097 + [M] Cell division protein FtsI/penicillin-binding protein 2 spoVD CDS COG0768 1584214 1586154 + [M] Cell division protein FtsI/penicillin-binding protein 2 murE CDS COG0769 1586330 1587814 + [M] UDP-N-acetylmuramyl tripeptide synthase mraY CDS COG0472 1587926 1588900 + [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase murD CDS COG0771 1588901 1590256 + [M] UDP-N-acetylmuramoylalanine-D-glutamate ligase spoVE CDS COG0772 1590317 1591417 + [D] Bacterial cell division membrane protein murG CDS COG0707 1591540 1592631 + [M] UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase murB CDS COG0812 1592663 1593574 + [M] UDP-N-acetylmuramate dehydrogenase divIB CDS COG1589 1593704 1594495 + [M] Cell division septal protein ylxW CDS COG3879 1594492 1595187 + [S] Uncharacterized protein conserved in bacteria ylxX CDS COG3879 1595210 1595917 + [S] Uncharacterized protein conserved in bacteria sbp CDS COG3856 1595935 1596300 + [S] Uncharacterized conserved protein (small basic protein) 908 ftsA CDS COG0849 1596474 1597796 + [D] Actin-like ATPase involved in cell division ftsZ CDS COG0206 1597832 1598980 + [D] Cell division GTPase 909 bpr CDS COG4412 1599283 1603584 + [S] Uncharacterized protein conserved in bacteria 910 spoIIGA CDS ROG0082 1603779 1604708 + NA sigE CDS COG1191 1604771 1605490 + [K] DNA-directed RNA polymerase specialized sigma subunit sigG CDS COG1191 1605630 1606412 + [K] DNA-directed RNA polymerase specialized sigma subunit 911 ylmA CDS COG1119 1606560 1607354 + [P] ABC-type molybdenum transport system, ATPase component/photorepair 912 thiQ CDS COG0624 1607556 1608836 + [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 913 ylmC CDS COG1873 1608919 1609164 + [S] Uncharacterized conserved protein 914 ylmD CDS COG1496 1609327 1610163 + [S] Uncharacterized conserved protein ylmE CDS COG0325 1610170 1610862 + [R] Predicted enzyme with a TIM-barrel fold sepF CDS COG1799 1610859 1611314 + [S] Uncharacterized protein conserved in bacteria ylmG CDS COG0762 1611321 1611593 + [S] Predicted integral membrane protein ylmH CDS COG2302 1611654 1612427 + [S] Uncharacterized conserved protein, contains S4-like domain divIVA CDS COG3599 1612521 1613015 + [D] Cell division initiation protein 915 ileS CDS COG0060 1613357 1616122 + [J] Isoleucyl-tRNA synthetase ylyA CDS COG1734 1616267 1616641 + [T] DnaK suppressor protein lspA CDS COG0597 1616744 1617208 + [MU] Lipoprotein signal peptidase rluD CDS COG0564 1617210 1618121 + [J] Pseudouridylate synthases, 23S RNA-specific 916 pyrR CDS COG2065 1618304 1618849 + [F] Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase pyrP CDS COG2233 1619023 1620330 + [F] Xanthine/uracil permeases pyrB CDS COG0540 1620476 1621390 + [F] Aspartate carbamoyltransferase, catalytic chain pyrC CDS COG0044 1621374 1622660 + [F] Dihydroorotase and related cyclic amidohydrolases pyrAA CDS COG0505 1622657 1623751 + [EF] Carbamoylphosphate synthase small subunit pyrAB CDS COG0458 1623736 1626951 + [EF] Carbamoylphosphate synthase large subunit (split gene pyrK CDS COG0543 1626948 1627718 + [HC] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases pyrD CDS COG0167 1627718 1628653 + [F] Dihydroorotate dehydrogenase pyrF CDS COG0284 1628622 1629341 + [F] Orotidine-5'-phosphate decarboxylase pyrE CDS COG0461 1629320 1629970 + [F] Orotate phosphoribosyltransferase 917 cysH CDS COG0175 1630382 1631083 + [EH] 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase cysP CDS COG0306 1631095 1632159 + [P] Phosphate/sulphate permeases sat CDS COG2046 1632208 1633356 + [P] ATP sulfurylase (sulfate adenylyltransferase) cysC CDS COG0529 1633369 1633962 + [P] Adenylylsulfate kinase and related kinases sumT CDS COG0007 1634061 1634834 + [H] Uroporphyrinogen-III methylase sirB CDS COG2138 1634837 1635622 + [S] Uncharacterized conserved protein sirC CDS COG1648 1635603 1636091 + [H] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 918 fbnA CDS COG1293 1636131 1637849 - [K] Predicted RNA-binding protein homologous to eukaryotic 919 tcaB CDS COG0474 1637965 1640637 + [P] Cation transport ATPase 920 yloC CDS COG1561 1640720 1641595 + [S] Uncharacterized stress-induced protein remA CDS COG2052 1641672 1641941 + [S] Uncharacterized protein conserved in bacteria gmk CDS COG0194 1641949 1642563 + [F] Guanylate kinase rpoZ CDS COG1758 1642567 1642770 + [K] DNA-directed RNA polymerase, subunit K/omega coaBC CDS COG0452 1642851 1644071 + [H] Phosphopantothenoylcysteine synthetase/decarboxylase priA CDS COG1198 1644068 1646485 + [L] Primosomal protein N' (replication factor Y) defA CDS COG0242 1646512 1646994 + [J] N-formylmethionyl-tRNA deformylase fmt CDS COG0223 1646999 1647952 + [J] Methionyl-tRNA formyltransferase rsmB CDS COG0144 1647939 1649282 + [J] tRNA and rRNA cytosine-C5-methylases rlmN CDS COG0820 1649286 1650377 + [R] Predicted Fe-S-cluster redox enzyme prpC CDS COG0631 1650384 1651148 + [T] Serine/threonine protein phosphatase prkC CDS COG2815 1651142 1653088 + [S] Uncharacterized protein conserved in bacteria rsgA CDS COG1162 1653103 1653999 + [R] Predicted GTPases rpe CDS COG0036 1654004 1654657 + [G] Pentose-5-phosphate-3-epimerase thiN CDS COG1564 1654730 1655374 + [H] Thiamine pyrophosphokinase 921 spoVM CDS NA 1655446 1655526 + NA 922 rpmB CDS COG0227 1655599 1655787 - [J] Ribosomal protein L28 923 yloU CDS COG1302 1656064 1656426 + [S] Uncharacterized protein conserved in bacteria yloV CDS COG1461 1656442 1658103 + [R] Predicted kinase related to dihydroxyacetone kinase 924 sdaAB CDS COG1760 1658242 1658904 + [E] L-serine deaminase sdaAA CDS COG1760 1658930 1659832 + [E] L-serine deaminase recG CDS COG1200 1659810 1661858 + [LK] RecG-like helicase 925 fapR CDS COG1349 1661967 1662533 + [KG] Transcriptional regulators of sugar metabolism plsX CDS COG0416 1662547 1663548 + [I] Fatty acid/phospholipid biosynthesis enzyme fabD CDS COG0331 1663567 1664520 + [I] (acyl-carrier-protein) S-malonyltransferase fabG CDS COG1028 1664513 1665253 + [IQR] Dehydrogenases with different specificities (related to acpA CDS COG0236 1665337 1665570 + [IQ] Acyl carrier protein rnc CDS COG0571 1665710 1666459 + [K] dsRNA-specific ribonuclease smc CDS COG1196 1666560 1670120 + [D] Chromosome segregation ATPases ftsY CDS COG0552 1670140 1671129 + [U] Signal recognition particle GTPase 926 ylqB CDS COG5266 1671166 1671651 - [P] ABC-type Co2+ transport system, periplasmic component 927 ylxM CDS COG2739 1671828 1672160 + [S] Uncharacterized protein conserved in bacteria ffh CDS COG0541 1672174 1673514 + [U] Signal recognition particle GTPase rpsP CDS COG0228 1673620 1673892 + [J] Ribosomal protein S16 ylqC CDS COG1837 1673892 1674137 + [R] Predicted RNA-binding protein (contains KH domain) 928 ylqD CDS ROG4585 1674259 1674645 + NA rimM CDS COG0806 1674650 1675174 + [J] RimM protein, required for 16S rRNA trmD CDS COG0336 1675171 1675902 + [J] tRNA-(guanine-N1)-methyltransferase rplS CDS COG0335 1676042 1676389 + [J] Ribosomal protein L19 rbgA CDS COG1161 1676532 1677380 + [R] Predicted GTPases rnhB CDS COG0164 1677451 1678218 + [L] Ribonuclease HII ylqG CDS ROG8521 1678250 1679980 + NA ylqH CDS COG2257 1679977 1680258 + [S] Uncharacterized homolog of the cytoplasmic domain 929 sucC CDS COG0045 1680431 1681588 + [C] Succinyl-CoA synthetase, beta subunit sucD CDS COG0074 1681617 1682519 + [C] Succinyl-CoA synthetase, alpha subunit dprA CDS COG0758 1682580 1683473 + [LU] Predicted Rossmann fold nucleotide-binding protein involved topA CDS COG0550 1683661 1685736 + [L] Topoisomerase IA trmFO CDS COG1206 1685812 1687119 + [J] NAD(FAD)-utilizing enzyme possibly involved in translation codV CDS COG4974 1687187 1688101 + [L] Site-specific recombinase XerD clpQ CDS COG5405 1688114 1688659 + [O] ATP-dependent protease HslVU (ClpYQ), peptidase subunit clpY CDS COG1220 1688676 1690079 + [O] ATP-dependent protease HslVU (ClpYQ), ATPase subunit codY CDS COG4465 1690119 1690898 + [K] Pleiotropic transcriptional repressor 930 flgB CDS COG1815 1691278 1691667 + [N] Flagellar basal body protein flgC CDS COG1558 1691667 1692119 + [N] Flagellar basal body rod protein fliE CDS COG1677 1692130 1692450 + [NU] Flagellar hook-basal body protein fliF CDS COG1766 1692496 1694106 + [NU] Flagellar biosynthesis/type III secretory pathway lipoprotein fliG CDS COG1536 1694119 1695135 + [N] Flagellar motor switch protein fliH CDS COG1317 1695254 1695880 + [NU] Flagellar biosynthesis/type III secretory pathway protein fliI CDS COG1157 1695877 1697193 + [NU] Flagellar biosynthesis/type III secretory pathway ATPase fliJ CDS COG2882 1697196 1697639 + [NUO] Flagellar biosynthesis chaperone ylxF CDS COG3334 1697651 1698265 + [S] Uncharacterized conserved protein fliK CDS COG3144 1698278 1699741 + [N] Flagellar hook-length control protein flgD CDS COG1843 1699738 1700160 + [N] Flagellar hook capping protein flgE CDS COG4786 1700182 1700976 + [N] Flagellar basal body rod protein swrD CDS COG1582 1701016 1701231 + [N] Uncharacterized protein, possibly involved in motility fliL CDS COG1580 1701228 1701650 + [N] Flagellar basal body-associated protein fliM CDS COG1868 1701684 1702682 + [N] Flagellar motor switch protein fliY CDS COG1776 1702672 1703808 + [NT] Chemotaxis protein CheC, inhibitor of MCP cheY CDS COG2201 1703834 1704196 + [NT] Chemotaxis response regulator containing a CheY-like fliZ CDS COG3190 1704211 1704870 + [N] Flagellar biogenesis protein fliP CDS COG1338 1704863 1705528 + [NU] Flagellar biosynthesis pathway, component FliP fliQ CDS COG1987 1705543 1705812 + [NU] Flagellar biosynthesis pathway, component FliQ fliR CDS COG1684 1705820 1706599 + [NU] Flagellar biosynthesis pathway, component FliR flhB CDS COG1377 1706599 1707681 + [NU] Flagellar biosynthesis pathway, component FlhB flhA CDS COG1298 1707714 1709747 + [NU] Flagellar biosynthesis pathway, component FlhA flhF CDS COG1419 1709747 1710847 + [N] Flagellar GTP-binding protein flhG CDS COG0455 1710838 1711734 + [D] ATPases involved in chromosome partitioning cheB CDS COG2201 1711736 1712809 + [NT] Chemotaxis response regulator containing a CheY-like cheA CDS COG0643 1712815 1714833 + [NT] Chemotaxis protein histidine kinase and related cheW CDS COG0835 1714855 1715325 + [NT] Chemotaxis signal transduction protein cheC CDS COG1776 1715344 1715973 + [NT] Chemotaxis protein CheC, inhibitor of MCP cheD CDS COG1871 1715970 1716470 + [NT] Chemotaxis protein; stimulates methylation of MCP sigD CDS COG1191 1716493 1717257 + [K] DNA-directed RNA polymerase specialized sigma subunit swrB CDS ROG3124 1717286 1717789 + NA 931 rpsB CDS COG0052 1717933 1718673 + [J] Ribosomal protein S2 tsf CDS COG0264 1718775 1719656 + [J] Translation elongation factor Ts pyrH CDS COG0528 1719802 1720524 + [F] Uridylate kinase frr CDS COG0233 1720526 1721083 + [J] Ribosome recycling factor uppS CDS COG0020 1721214 1721996 + [I] Undecaprenyl pyrophosphate synthase cdsA CDS COG0575 1722000 1722809 + [I] CDP-diglyceride synthetase dxr CDS COG0743 1722871 1724022 + [I] 1-deoxy-D-xylulose 5-phosphate reductoisomerase rasP CDS COG0750 1724029 1725297 + [M] Predicted membrane-associated Zn-dependent proteases 1 proS CDS COG0442 1725330 1727024 + [J] Prolyl-tRNA synthetase polC CDS COG2176 1727133 1731446 + [L] DNA polymerase III, alpha subunit (gram-positive 932 rimP CDS COG0779 1731776 1732246 + [S] Uncharacterized protein conserved in bacteria nusA CDS COG0195 1732281 1733396 + [K] Transcription elongation factor rulR CDS COG2740 1733410 1733685 + [K] Predicted nucleic-acid-binding protein implicated in transcription rulQ CDS COG1358 1733687 1733989 + [J] Ribosomal protein HS6-type (S12/L30/L7a) infB CDS COG0532 1734009 1736159 + [J] Translation initiation factor 2 (IF-2; GTPase) ylxP CDS COG1550 1736156 1736434 + [S] Uncharacterized protein conserved in bacteria rbfA CDS COG0858 1736451 1736804 + [J] Ribosome-binding factor A truB CDS COG0130 1736886 1737815 + [J] Pseudouridine synthase ribC CDS COG0196 1737834 1738784 + [H] FAD synthase rpsO CDS COG0184 1738941 1739210 + [J] Ribosomal protein S15P/S13E pnpA CDS COG1185 1739383 1741500 + [J] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 933 ylxY CDS COG0726 1741618 1742577 + [G] Predicted xylanase/chitin deacetylase mlpA CDS COG0612 1742617 1743846 + [R] Predicted Zn-dependent peptidases 934 ymxH CDS COG1873 1743924 1744181 + [S] Uncharacterized conserved protein 935 spoVFA CDS ROG0469 1744367 1745260 + NA spoVFB CDS NA 1745263 1745865 + NA 936 asd CDS COG0136 1745991 1747031 + [E] Aspartate-semialdehyde dehydrogenase dapG CDS COG0527 1747123 1748337 + [E] Aspartokinases dapA CDS COG0329 1748368 1749240 + [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 937 rnjB CDS COG0595 1749418 1751085 + [R] Predicted hydrolase of the metallo-beta-lactamase superfamily 938 tepA CDS ROG6115 1751201 1751938 + NA tepJ CDS ROG3033 1751935 1752147 + NA 939 spoIIIE CDS COG1674 1752278 1754641 + [D] DNA segregation ATPase FtsK/SpoIIIE and related 940 ymfC CDS COG2188 1754785 1755510 + [K] Transcriptional regulators 941 bcbE CDS COG0477 1755649 1756857 + [GEPR] Permeases of the major facilitator superfamily 942 ymfF CDS COG0612 1757037 1758317 + [R] Predicted Zn-dependent peptidases ymfH CDS COG0612 1758314 1759600 + [R] Predicted Zn-dependent peptidases efpI CDS COG1028 1759655 1760383 + [IQR] Dehydrogenases with different specificities (related to 943 ymfJ CDS ROG1572 1760464 1760721 + NA 944 ymfKn CDS ROG1191 1760851 1761303 + NA ymfKc CDS ROG1191 1761302 1761640 + NA 945 rodZ CDS COG1426 1761707 1762573 + [S] Uncharacterized protein conserved in bacteria pgsA CDS COG0558 1762623 1763204 + [I] Phosphatidylglycerophosphate synthase cinA CDS COG1058 1763222 1764472 + [R] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis recA CDS COG0468 1764645 1765691 + [L] RecA/RadA recombinase 946 pbpX CDS COG1680 1765859 1767034 + [V] Beta-lactamase class C and other penicillin 947 rny CDS COG1418 1767310 1768872 + [R] Predicted HD superfamily hydrolase pdeB CDS COG1692 1768941 1769735 + [S] Uncharacterized protein conserved in bacteria 948 spoVS CDS COG2359 1769935 1770195 + [S] Uncharacterized protein conserved in bacteria 949 tdh CDS COG1063 1770461 1771504 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases kbl CDS COG0156 1771517 1772695 + [H] 7-keto-8-aminopelargonate synthetase and related enzymes 950 miaB CDS COG0621 1772843 1774372 + [J] 2-methylthioadenine synthetase ricA CDS COG4550 1774374 1774805 + [S] Predicted membrane protein 951 cotE CDS ROG3838 1775067 1775612 + NA 952 mutS CDS COG0249 1775745 1778321 + [L] Mismatch repair ATPase (MutS family) mutL CDS COG0323 1778337 1780220 + [L] DNA mismatch repair enzyme (predicted ATPase) 953 ymzD CDS NA 1780618 1781073 - NA 954 ymcC CDS ROG0597 1781228 1781785 - NA 955 pksA CDS COG3226 1781906 1782523 + [S] Uncharacterized protein conserved in bacteria 956 pksB CDS COG0491 1782713 1783390 + [R] Zn-dependent hydrolases, including glyoxylases 957 cds-SOX90554.1 CDS NA 1783500 1783766 + NA pksC CDS COG0331 1783763 1784629 + [I] (acyl-carrier-protein) S-malonyltransferase 958 pksD CDS COG3321 1785133 1786107 + [Q] Polyketide synthase modules and related proteins pksE CDS COG0331 1786104 1788407 + [I] (acyl-carrier-protein) S-malonyltransferase acpK CDS NA 1788469 1788717 + NA pksF CDS COG0304 1788695 1789942 + [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase pksG CDS COG3425 1789943 1791205 + [I] 3-hydroxy-3-methylglutaryl CoA synthase pksH CDS COG1024 1791193 1791972 + [I] Enoyl-CoA hydratase/carnithine racemase pksI CDS COG0447 1792012 1792761 + [H] Dihydroxynaphthoic acid synthase pksJ CDS COG3321 1792806 1807937 + [Q] Polyketide synthase modules and related proteins pksL CDS COG3321 1807921 1821537 + [Q] Polyketide synthase modules and related proteins pksM CDS COG3321 1821553 1834341 + [Q] Polyketide synthase modules and related proteins pksN CDS COG3321 1834409 1850875 + [Q] Polyketide synthase modules and related proteins pksR CDS COG3321 1850890 1858521 + [Q] Polyketide synthase modules and related proteins 959 pksS CDS COG2124 1858566 1859783 - [Q] Cytochrome P450 960 ymzB CDS NA 1860014 1860370 - NA 961 ymaE CDS ROG1616 1860449 1861273 - NA 962 aprX CDS COG1404 1861384 1862712 - [O] Subtilisin-like serine proteases 963 ymzEn CDS NA 1862937 1862993 + NA ymzEc CDS NA 1862992 1863168 + NA 964 pghC CDS COG4195 1863448 1864155 + [R] Phage-related replication protein 965 ymaD CDS COG1764 1864225 1864677 + [O] Predicted redox protein, regulator of disulfide 966 ebrB CDS COG2076 1864691 1865044 - [P] Membrane transporters of cations and cationic ebrA CDS COG2076 1865058 1865375 - [P] Membrane transporters of cations and cationic 967 ymaG CDS NA 1865512 1865787 - NA 968 ymaF CDS ROG4335 1865876 1866289 + NA 969 miaA CDS COG0324 1866389 1867333 + [J] tRNA delta(2)-isopentenylpyrophosphate transferase hfq CDS COG1923 1867373 1867594 + [R] Uncharacterized host factor I protein 970 ymzC CDS ROG1188 1867790 1868062 + NA 971 ymzA CDS NA 1868144 1868374 + NA 972 nrdI CDS COG1780 1868617 1869009 + [F] Protein involved in ribonucleotide reduction nrdE CDS COG0209 1868969 1871071 + [F] Ribonucleotide reductase, alpha subunit nrdF CDS COG0208 1871089 1872078 + [F] Ribonucleotide reductase, beta subunit ymaB CDS COG4112 1872128 1872748 + [R] Predicted phosphoesterase (MutT family) 973 cwlC CDS COG0860 1872812 1873579 - [M] N-acetylmuramoyl-L-alanine amidase 974 spoVK CDS COG0464 1874203 1875171 + [O] ATPases of the AAA+ class 975 hflX CDS COG2262 1875304 1876566 + [R] GTPases ynbB CDS COG4100 1876584 1877849 + [P] Cystathionine beta-lyase family protein involved in 976 glnR CDS COG0789 1877959 1878366 + [K] Predicted transcriptional regulators glnA CDS COG0174 1878425 1879759 + [E] Glutamine synthetase 977 ynxB CDS NA 1880087 1880377 + NA 978 ynzF CDS NA 1880623 1880967 + NA 979 ynzG CDS ROG8044 1881098 1881349 + NA 980 ynaB CDS ROG6655 1881536 1881970 + NA 981 ynaC CDS NA 1882040 1882831 + NA 982 ynaD CDS COG1670 1883166 1883678 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins 983 ynaE CDS ROG5731 1884238 1884879 + NA 984 ynaF CDS NA 1884968 1885321 + NA ynaG CDS NA 1885365 1885640 + NA 985 ynzI CDS ROG1944 1885753 1885917 + NA 986 ynaI CDS NA 1886057 1886527 + NA 987 xynP CDS COG2211 1887352 1888743 + [G] Na+/melibiose symporter and related transporters xynB CDS COG3507 1888774 1890375 + [G] Beta-xylosidase 988 xylR CDS COG1940 1890512 1891666 - [KG] Transcriptional regulator/sugar kinase 989 xylA CDS COG2115 1891908 1893245 + [G] Xylose isomerase xylB CDS COG1070 1893396 1894895 + [G] Sugar (pentulose and hexulose) kinases 990 yncB CDS COG1525 1895378 1896013 - [L] Micrococcal nuclease (thermonuclease) homologs 991 yncC CDS ROG2472 1896424 1897839 + NA 992 alrB CDS COG0787 1897941 1899125 - [M] Alanine racemase 993 yncE CDS NA 1899589 1900050 + NA dutA CDS COG0756 1900080 1900514 + [F] dUTPase 994 cotU CDS NA 1901117 1901377 - NA 995 ynzJ CDS NA 1901612 1901737 + NA cds-SOX90555.1 CDS NA 1901781 1901945 + NA 996 thyA CDS COG0207 1902219 1903058 + [F] Thymidylate synthase 997 cds-SOX90556.1 CDS NA 1903181 1903468 - NA yncM CDS NA 1903511 1904233 - NA 998 ynzK CDS NA 1904393 1904749 - NA 999 cotC CDS NA 1904995 1905195 - NA 1000 tatAC CDS COG1826 1905370 1905558 - [U] Sec-independent protein secretion pathway components 1001 cds-SOX90557.1 CDS NA 1905637 1905774 + NA yndA CDS NA 1905809 1906207 + NA 1002 flvS CDS COG3832 1906272 1906706 - [S] Uncharacterized conserved protein 1003 ynzB CDS NA 1907013 1907201 + NA 1004 yndD CDS ROG5283 1907494 1909056 + NA yndE CDS ROG0038 1909086 1910177 + NA yndF CDS ROG0172 1910167 1911381 + NA 1005 yndG CDS ROG1676 1911528 1912334 + NA yndH CDS ROG4357 1912339 1912956 + NA yndJ CDS NA 1912953 1914593 + NA yndK CDS ROG5406 1914630 1914995 + NA 1006 pghL CDS COG4195 1915221 1915979 + [R] Phage-related replication protein 1007 yndM CDS ROG2806 1916006 1916545 - NA 1008 fosB CDS COG0346 1916663 1917097 + [E] Lactoylglutathione lyase and related lyases yzzP CDS NA 1916955 1917302 + NA 1009 lexA CDS COG1974 1917639 1918256 - [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 1010 dinK CDS COG1388 1918406 1918723 + [M] FOG: LysM repeat dinL CDS COG2452 1918742 1919395 + [L] Predicted site-specific integrase-resolvase 1011 ynzC CDS COG4224 1919459 1919692 + [S] Uncharacterized protein conserved in bacteria 1012 tktA CDS COG0021 1919861 1921864 + [G] Transketolase 1013 pcfA CDS ROG5131 1922017 1922463 + NA 1014 yneF CDS COG3763 1922549 1922767 + [S] Uncharacterized protein conserved in bacteria 1015 spo0D CDS COG5630 1922841 1923014 - [E] Acetylglutamate synthase 1016 ccdA CDS COG0785 1923234 1923941 + [O] Cytochrome c biogenesis protein 1017 yneI CDS COG2197 1924030 1924392 + [TK] Response regulator containing a CheY-like receiver 1018 yneJ CDS COG4846 1924471 1924962 + [O] Membrane protein involved in cytochrome C 1019 yneK CDS ROG3817 1924993 1925421 - NA 1020 cotM CDS COG0071 1925655 1926047 - [O] Molecular chaperone (small heat shock protein) 1021 sspP CDS NA 1926128 1926274 - NA sspO CDS NA 1926306 1926452 - NA 1022 citB CDS COG1048 1926680 1929409 + [C] Aconitase A yneN CDS COG0526 1929481 1929993 + [OC] Thiol-disulfide isomerase and thioredoxins 1023 ynzL CDS NA 1930074 1930199 + NA 1024 sspN CDS NA 1930264 1930410 + NA sspT CDS ROG7301 1930447 1930698 + NA 1025 yneP CDS COG0824 1930834 1931199 + [R] Predicted thioesterase yneQ CDS ROG4366 1931215 1931514 + NA 1026 yneR CDS COG4841 1931545 1931832 - [S] Uncharacterized protein conserved in bacteria plsY CDS COG0344 1931920 1932501 - [S] Predicted membrane protein 1027 yneT CDS COG1832 1932671 1933078 + [R] Predicted CoA-binding protein 1028 parE CDS COG0187 1933477 1935444 + [L] Type IIA topoisomerase (DNA gyrase/topo II, parC CDS COG0188 1935448 1937868 + [L] Type IIA topoisomerase (DNA gyrase/topo II, 1029 ynfCc CDS NA 1937915 1938091 - NA ynfCn CDS NA 1938066 1938476 - NA 1030 alsT CDS COG1115 1938925 1940322 + [E] Na+/alanine symporter 1031 eglS CDS COG2730 1940625 1942124 + [G] Endoglucanase 1032 ynfE CDS NA 1942192 1942455 + NA 1033 xynC CDS COG5520 1942714 1943982 - [M] O-Glycosyl hydrolase 1034 xynD CDS ROG2448 1944113 1945654 - NA 1035 yngA CDS COG2246 1946249 1946695 + [S] Predicted membrane protein yngB CDS COG1210 1946702 1947595 + [M] UDP-glucose pyrophosphorylase 1036 yngC CDS COG0586 1947668 1948264 + [S] Uncharacterized membrane-associated protein 1037 nrnB CDS COG2404 1948313 1949512 - [R] Predicted phosphohydrolase (DHH superfamily) 1038 ldeE CDS COG4799 1949682 1951217 - [I] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha ldeF CDS COG1024 1951228 1952010 - [I] Enoyl-CoA hydratase/carnithine racemase ldeG CDS NA 1952031 1952930 - NA lgeHB CDS COG4770 1952945 1953166 - [I] Acetyl/propionyl-CoA carboxylase, alpha subunit ldeHA CDS COG0439 1953181 1954515 - [I] Biotin carboxylase ldeI CDS COG0318 1954525 1956174 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II ldeJ CDS COG1960 1956218 1957360 - [I] Acyl-CoA dehydrogenases 1039 ynzE CDS NA 1957451 1957756 - NA cds-SOX90560.1 CDS NA 1957746 1957919 - NA 1040 yngK CDS COG1649 1958027 1959559 - [S] Uncharacterized protein conserved in bacteria 1041 yngL CDS ROG1958 1959695 1960087 - NA 1042 ppsE CDS COG1020 1960198 1964037 - [Q] Non-ribosomal peptide synthetase modules and related ppsD CDS COG1020 1964045 1974856 - [Q] Non-ribosomal peptide synthetase modules and related ppsC CDS COG1020 1974881 1982548 - [Q] Non-ribosomal peptide synthetase modules and related ppsB CDS COG1020 1982565 1990247 - [Q] Non-ribosomal peptide synthetase modules and related ppsA CDS COG1020 1990272 1997957 - [Q] Non-ribosomal peptide synthetase modules and related 1043 dacC CDS COG2027 1998340 1999815 - [M] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) galM CDS COG2017 1999849 2000826 - [G] Galactose mutarotase and related enzymes 1044 yoeA CDS COG0534 2000960 2002351 - [V] Na+-driven multidrug efflux pump 1045 iseA CDS NA 2002637 2003182 + NA 1046 trnSL-Arg1 tRNA NA 2003276 2003348 - NA yoeC CDS ROG5398 2003401 2003946 - NA 1047 yoeD CDS ROG6841 2004262 2004492 - NA 1048 ggt CDS COG0405 2004677 2006440 + [E] Gamma-glutamyltransferase 1049 ftsR CDS COG0583 2006541 2007398 - [K] Transcriptional regulator 1050 yogA CDS COG0604 2007526 2008515 + [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases 1051 gltB CDS COG0493 2008572 2010053 - [ER] NADPH-dependent glutamate synthase beta chain and gltA CDS COG0069 2010070 2014632 - [E] Glutamate synthase domain 2 1052 gltC CDS COG0583 2014779 2015681 + [K] Transcriptional regulator 1053 proJ CDS COG0263 2015733 2016848 - [E] Glutamate 5-kinase proH CDS COG0345 2016845 2017738 - [E] Pyrroline-5-carboxylate reductase 1054 rtp CDS ROG4152 2017886 2018254 - NA 1055 yoxD CDS COG1028 2018554 2019270 - [IQR] Dehydrogenases with different specificities (related to 1056 yoxC CDS COG4768 2019421 2019726 + [R] Uncharacterized protein containing a divergent version 1057 yoxB CDS ROG8479 2019797 2020567 + NA yoaA CDS COG1670 2020611 2021144 + [J] Acetyltransferases, including N-acetylases of ribosomal proteins 1058 yoaB CDS NA 2021223 2022467 - NA 1059 yoaC CDS COG1070 2022561 2024024 - [G] Sugar (pentulose and hexulose) kinases yoaD CDS COG0111 2024042 2025076 - [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1060 yoaE CDS COG0243 2025400 2027442 + [C] Anaerobic dehydrogenases, typically selenocysteine-containing 1061 yoaF CDS NA 2027509 2027802 + NA 1062 yoaG CDS COG4721 2028175 2028579 - [S] Predicted membrane protein 1063 cds-SOX90561.1 CDS NA 2028665 2028784 - NA 1064 cds-CCQ48597.1 CDS NA 2028854 2028976 + NA yozQ CDS NA 2029020 2029313 + NA 1065 yoaH CDS COG0840 2029429 2031114 - [NT] Methyl-accepting chemotaxis protein 1066 yoaI CDS COG2368 2031439 2032890 + [Q] Aromatic ring hydroxylase 1067 exlX CDS COG4305 2032927 2033625 - [G] Endoglucanase C-terminal domain/subunit and related proteins 1068 yoaK CDS COG3619 2033895 2034572 - [S] Predicted membrane protein 1069 pelB CDS COG3866 2034745 2035782 + [G] Pectate lyase 1070 yoaM CDS COG2135 2036039 2036722 + [S] Uncharacterized conserved protein 1071 yozS CDS NA 2037063 2037368 - NA 1072 oxdD CDS COG2140 2037601 2038779 - [GR] Thermophilic glucose-6-phosphate isomerase and related metalloenzymes 1073 yoaO CDS ROG2428 2038902 2039390 - NA cds-SOX90562.1 CDS NA 2039415 2039570 - NA yoaP CDS ROG4093 2039610 2040365 - NA 1074 yoaQ CDS ROG5961 2040673 2041029 + NA 1075 yozT CDS NA 2040988 2041227 - NA 1076 yozF CDS NA 2041330 2041827 - NA 1077 yoaR CDS COG2720 2041928 2042839 - [V] Uncharacterized vancomycin resistance protein 1078 yoaS CDS ROG1205 2043186 2043668 + NA yozG CDS COG3655 2043678 2043932 + [K] Predicted transcriptional regulator 1079 yoaT CDS COG3739 2044038 2044832 + [S] Uncharacterized integral membrane protein 1080 yoaU CDS COG0583 2044956 2045828 - [K] Transcriptional regulator 1081 yoaV CDS COG0697 2045929 2046807 + [GER] Permeases of the drug/metabolite transporter (DMT) 1082 yoaW CDS NA 2046980 2047411 - NA 1083 yoaZ CDS COG0693 2047675 2048307 - [R] Putative intracellular protease/amidase 1084 penP CDS COG2367 2048533 2049453 + [V] Beta-lactamase class A 1085 yobA CDS ROG4819 2049950 2050312 - NA yozU CDS NA 2050373 2050585 - NA 1086 yobB CDS NA 2050689 2050952 + NA 1087 yppS CDS COG0574 2051329 2053929 - [G] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 1088 xynA CDS ROG3675 2054599 2055240 - NA 1089 yozV CDS COG2314 2055868 2056107 - [S] Predicted membrane protein 1090 yobD CDS COG2932 2056278 2056616 + [K] Predicted transcriptional regulator 1091 yozH CDS NA 2056650 2057006 - NA 1092 yozI CDS ROG5961 2057214 2057579 + NA 1093 yobE CDS COG2135 2057801 2058460 + [S] Uncharacterized conserved protein 1094 yobF CDS ROG1237 2058715 2059638 - NA yozW CDS NA 2059691 2059864 - NA 1095 yozX CDS NA 2060009 2060233 + NA 1096 yozJ CDS NA 2060237 2060692 - NA 1097 yozY CDS NA 2060817 2061077 + NA 1098 yozZ CDS COG5546 2061855 2061995 + [S] Small integral membrane protein 1099 rapK CDS COG0457 2062150 2063265 + [R] FOG: TPR repeat phrK CDS NA 2063262 2063384 + NA 1100 yobHc CDS COG0389 2063510 2064163 - [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair yobHm CDS NA 2064200 2064547 - NA yozL CDS ROG4480 2064540 2064833 - NA 1101 yozM CDS NA 2065042 2065377 + NA 1102 yobI CDS ROG2133 2065424 2069029 - NA 1103 yoyA CDS NA 2069262 2069561 - NA 1104 bsrE CDS NA 2069883 2069975 + NA 1105 yobJ CDS NA 2070244 2071086 - NA 1106 rttM CDS ROG6489 2071286 2071744 - NA rttL CDS COG5444 2071754 2073556 - [S] Uncharacterized conserved protein 1107 yobM CDS ROG8432 2073658 2074215 - NA 1108 yobN CDS COG1231 2074343 2075779 + [E] Monoamine oxidase 1109 yobO CDS COG5434 2076206 2078626 + [M] Endopolygalacturonase 1110 csaA CDS COG0073 2079214 2079546 - [R] EMAP domain 1111 yobQ CDS COG2207 2079611 2080336 - [K] AraC-type DNA-binding domain-containing proteins yobR CDS COG0454 2080351 2081094 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1112 yobS CDS NA 2081172 2081747 - NA yobT CDS COG0491 2081753 2082454 - [R] Zn-dependent hydrolases, including glyoxylases 1113 yobU CDS COG3708 2082531 2083013 - [S] Uncharacterized protein conserved in bacteria yobV CDS COG2378 2083067 2084008 - [K] Predicted transcriptional regulator 1114 yobW CDS NA 2084214 2084759 + NA 1115 czrA CDS COG0640 2084786 2085109 - [K] Predicted transcriptional regulators 1116 yocA CDS ROG7191 2085303 2085980 + NA 1117 yozB CDS COG2322 2086070 2086606 - [S] Predicted membrane protein 1118 yocB CDS ROG4835 2086743 2087525 - NA 1119 yocC CDS ROG3672 2087696 2088193 + NA 1120 yocD CDS COG1619 2088257 2089234 + [V] Uncharacterized proteins, homologs of microcin C7 1121 desE CDS COG3239 2089396 2090454 + [I] Fatty acid desaturase desK CDS COG4585 2090574 2091686 + [T] Signal transduction histidine kinase desR CDS COG2197 2091705 2092304 + [TK] Response regulator containing a CheY-like receiver 1122 walL CDS COG3584 2092899 2093762 - [S] Uncharacterized protein conserved in bacteria 1123 recQ CDS COG0514 2094010 2095785 - [L] Superfamily II DNA helicase 1124 azoJ CDS COG1182 2096350 2096976 - [I] Acyl carrier protein phosphodiesterase 1125 yocK CDS COG1734 2097126 2097617 - [T] DnaK suppressor protein 1126 yocL CDS NA 2097692 2098024 - NA 1127 yoyB CDS ROG1425 2098102 2098329 + NA 1128 yocM CDS COG0071 2098316 2098792 - [O] Molecular chaperone (small heat shock protein) 1129 yozN CDS NA 2098859 2099122 + NA yocN CDS NA 2099127 2099360 + NA 1130 yozO CDS ROG4404 2099446 2099790 - NA 1131 yozC CDS ROG1997 2100147 2100350 - NA 1132 dhaS CDS COG1012 2100580 2102067 + [C] NAD-dependent aldehyde dehydrogenases 1133 sqhC CDS COG1657 2102168 2104066 + [I] Squalene cyclase sodF CDS COG0605 2104056 2104901 + [P] Superoxide dismutase 1134 yocR CDS COG0733 2104934 2106271 - [R] Na+-dependent transporters of the SNF family 1135 yocS CDS COG0385 2106490 2107455 + [R] Predicted Na+-dependent transporter 1136 odhB CDS COG0508 2107505 2108758 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) odhA CDS COG0567 2108774 2111608 - [C] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, 1137 yojO CDS COG4548 2111837 2113753 - [P] Nitric oxide reductase activation protein yojN CDS COG5271_4X 2113764 2114678 - NA 1138 sodC CDS COG2032 2114742 2115332 - [P] Cu/Zn superoxide dismutase 1139 cwlS CDS COG1388 2115425 2116669 - [M] FOG: LysM repeat 1140 yojK CDS COG1819 2117051 2118268 - [GC] Glycosyl transferases, related to UDP-glucuronosyltransferase 1141 cdaS CDS COG1624 2118504 2119127 - [S] Uncharacterized conserved protein 1142 mdtK CDS COG0534 2119393 2120751 + [V] Na+-driven multidrug efflux pump rsbRC CDS COG1366 2120767 2121615 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma 1143 bshBB CDS COG2120 2121641 2122306 - [S] Uncharacterized proteins, LmbE homologs yojF CDS ROG1323 2122325 2122675 - NA yoyC CDS NA 2122672 2122950 - NA 1144 yojE CDS COG2962 2123026 2123922 - [R] Predicted permeases 1145 gerT CDS COG0071 2124021 2124494 + [O] Molecular chaperone (small heat shock protein) 1146 yojB CDS NA 2124529 2124765 - NA 1147 yojA CDS COG2610 2124850 2126184 - [GE] H+/gluconate symporter and related permeases 1148 yodA CDS ROG0074 2126549 2126938 + NA 1149 arxR CDS COG1733 2127345 2127683 - [K] Predicted transcriptional regulators 1150 noxC CDS COG0778 2127813 2128421 + [C] Nitroreductase 1151 yodD CDS COG0400 2128464 2129066 - [R] Predicted esterase yodE CDS COG0346 2129082 2129993 - [E] Lactoylglutathione lyase and related lyases 1152 yoyD CDS ROG1006 2130177 2130377 + NA yodF CDS COG0591 2130377 2131867 + [ER] Na+/proline symporter 1153 ctpA CDS COG0793 2131902 2133302 - [M] Periplasmic protease 1154 yodH CDS COG0500 2133455 2134156 + [QR] SAM-dependent methyltransferases 1155 yodI CDS NA 2134244 2134495 + NA 1156 ldcB CDS COG1876 2134566 2135387 - [M] D-alanyl-D-alanine carboxypeptidase deoD CDS COG0813 2135470 2136171 - [F] Purine-nucleoside phosphorylase 1157 yoyE CDS NA 2136373 2136498 + NA 1158 yodL CDS NA 2136538 2136852 - NA pgpB CDS COG0671 2136913 2137524 - [I] Membrane-associated phospholipid phosphatase 1159 yozD CDS NA 2137602 2137778 - NA 1160 yoyF CDS NA 2137897 2138040 + NA 1161 yodN CDS NA 2138037 2138717 - NA 1162 yozE CDS COG4479 2138868 2139092 - [S] Uncharacterized protein conserved in bacteria 1163 yokU CDS ROG3902 2139179 2139457 - NA kamA CDS COG1509 2139454 2140869 - [E] Lysine 2,3-aminomutase kamB CDS ROG0286 2140898 2141725 - NA yodQ CDS COG0624 2141703 2143013 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases yodR CDS COG2057 2143022 2143675 - [I] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit yodS CDS COG1788 2143660 2144349 - [I] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit yodT CDS COG0161 2144356 2145690 - [H] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase cds-SOX90564.1 CDS NA 2145671 2145826 - NA yoyG CDS NA 2145820 2146053 - NA cgeE CDS COG0454 2146013 2146792 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases cgeD CDS COG1216 2146821 2148101 - [R] Predicted glycosyltransferases 1164 cgeC CDS COG1872 2148166 2148471 - [S] Uncharacterized conserved protein 1165 cgeA CDS NA 2148676 2149077 + NA cgeB CDS COG4641 2149084 2150037 + [S] Uncharacterized protein conserved in bacteria 1166 phyC CDS COG4247 2150108 2151256 - [I] 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) 1167 spsMn CDS COG1086 2151626 2152045 + [MG] Predicted nucleoside-diphosphate sugar epimerases 1168 sprB CDS ROG2536 2152086 2152262 - NA yotM CDS COG3331 2152265 2152852 - [R] Penicillin-binding protein-related factor A, putative recombinase 1169 yotL CDS ROG2481 2152927 2153169 + NA 1170 yotK CDS ROG0045 2153171 2153356 - NA 1171 yotJ CDS NA 2153440 2153652 - NA 1172 yotI CDS ROG5216 2153718 2154080 - NA yotH CDS NA 2154077 2154250 - NA yotG CDS NA 2154266 2154583 - NA yotF CDS NA 2154596 2154673 - NA yotE CDS NA 2154705 2154851 - NA 1173 cds-SOX90565.1 CDS NA 2154781 2154972 + NA 1174 yotD CDS COG1592 2154887 2155018 - [C] Rubrerythrin yotC CDS ROG0525 2155058 2155249 - NA yotB CDS ROG0146 2155293 2156120 - NA 1175 sspC CDS ROG7143 2156239 2156457 + NA 1176 yosX CDS ROG7649 2156757 2157110 - NA 1177 yosW CDS NA 2157341 2157682 - NA 1178 yosV CDS NA 2157829 2158119 - NA yojW CDS NA 2158120 2158287 - NA 1179 yosU CDS NA 2158439 2158684 + NA 1180 yosT CDS COG3449 2158724 2159173 - [L] DNA gyrase inhibitor 1181 dutB CDS COG0756 2159268 2159696 - [F] dUTPase yosR CDS COG0526 2159742 2159984 - [OC] Thiol-disulfide isomerase and thioredoxins nrdFB CDS COG0208 2159981 2160388 - [F] Ribonucleotide reductase, beta subunit 1182 CDS_1 CDS NA 2161197 2161778 + NA 1183 yosQ CDS ROG3286 2160565 2161086 - NA 1184 nrdEB CDS COG0209 2162108 2164642 - [F] Ribonucleotide reductase, alpha subunit 1185 CDS_2 CDS NA 2164895 2165614 + NA 1186 nrdIB CDS COG1780 2165577 2165972 - [F] Protein involved in ribonucleotide reduction yosL CDS NA 2165972 2166325 - NA 1187 yosK CDS NA 2166413 2166613 - NA yosJ CDS NA 2166658 2166852 - NA yosI CDS NA 2166873 2167007 - NA yosH CDS NA 2167039 2167509 - NA yosG CDS NA 2167570 2167932 - NA yosF CDS NA 2167975 2168100 - NA yosE CDS NA 2168114 2168461 - NA yosD CDS NA 2168476 2168871 - NA yosC CDS NA 2168910 2169452 - NA yosB CDS NA 2169497 2169676 - NA 1188 yosA CDS NA 2169807 2169926 + NA 1189 yorZ CDS NA 2170030 2170242 - NA 1190 yorY CDS NA 2170309 2170491 - NA yorX CDS NA 2170504 2170731 - NA yorW CDS NA 2170771 2171136 - NA yorV CDS COG2522 2171139 2171357 - [R] Predicted transcriptional regulator mtbP CDS COG0270 2171401 2172732 - [L] Site-specific DNA methylase yorT CDS NA 2172781 2172900 - NA yorS CDS COG4502 2172932 2173450 - [S] Uncharacterized protein conserved in bacteria yorR CDS ROG3621 2173459 2173956 - NA yorQ CDS NA 2173956 2174111 - NA yorP CDS NA 2174104 2174319 - NA yorO CDS NA 2174352 2174549 - NA yorN CDS NA 2174585 2174734 - NA 1191 yorM CDS COG3584 2174852 2175568 - [S] Uncharacterized protein conserved in bacteria dpoL CDS COG0587 2175596 2179513 - [L] DNA polymerase III, alpha subunit yorK CDS COG0608 2179526 2181256 - [L] Single-stranded DNA-specific exonuclease yorJ CDS ROG3359 2181256 2182392 - NA yorI CDS NA 2182408 2183922 - NA yorH CDS NA 2183937 2184407 - NA yorG CDS ROG1975 2184450 2185421 - NA 1192 yorF CDS NA 2185504 2186418 - NA yorE CDS NA 2186440 2186811 - NA 1193 yorD CDS COG2963 2186985 2187299 - [L] Transposase and inactivated derivatives 1194 yorC CDS NA 2187376 2187756 - NA 1195 yorB CDS NA 2187819 2188115 - NA 1196 yorA CDS NA 2188204 2189964 - NA pghZ CDS COG4195 2189961 2190785 - [R] Phage-related replication protein 1197 yoqY CDS NA 2190884 2191279 - NA yoqX CDS NA 2191334 2191555 - NA 1198 yoqW CDS COG2135 2191626 2192300 + [S] Uncharacterized conserved protein yoqV CDS COG1793 2192370 2193182 + [L] ATP-dependent DNA ligase 1199 yoqU CDS NA 2193248 2193661 - NA 1200 yoqT CDS NA 2193827 2193976 + NA 1201 yoqS CDS NA 2194053 2194400 - NA yoqR CDS NA 2194402 2194758 - NA yoqP CDS NA 2194718 2195059 - NA 1202 yoqO CDS ROG7039 2195173 2195547 + NA 1203 yoqN CDS NA 2195564 2195782 - NA 1204 yoqM CDS NA 2195986 2196264 + NA 1205 yoqL CDS COG1403 2196389 2197081 - [V] Restriction endonuclease yoqK CDS NA 2197121 2197324 - NA yoqJ CDS COG4474 2197344 2197859 - [S] Uncharacterized protein conserved in bacteria 1206 yoqI CDS NA 2198070 2198264 - NA yoqH CDS NA 2198313 2198765 - NA 1207 yoqG CDS NA 2198848 2199105 - NA yoqF CDS NA 2199150 2199353 - NA yoqE CDS NA 2199362 2199526 - NA yoqD CDS COG3645 2199580 2200335 - [S] Uncharacterized phage-encoded protein yoqC CDS NA 2200376 2200783 - NA yoqB CDS ROG6321 2200790 2201128 - NA yoqA CDS NA 2201125 2201475 - NA yopZ CDS ROG4474 2201488 2201691 - NA yopY CDS NA 2201705 2201983 - NA yopX CDS ROG1608 2201980 2202384 - NA yopW CDS NA 2202381 2202716 - NA 1208 yopV CDS ROG6998 2202805 2202999 - NA 1209 yopU CDS NA 2203111 2203308 - NA 1210 yopT CDS NA 2203378 2203596 - NA 1211 yopS CDS ROG5128 2203779 2204003 + NA 1212 yopR CDS NA 2204192 2205169 - NA yopQ CDS ROG4132 2205193 2206575 - NA 1213 yopP CDS COG4974 2206682 2207758 - [L] Site-specific recombinase XerD yopO CDS ROG3697 2207748 2207960 - NA yopN CDS NA 2208008 2208325 - NA yopM CDS NA 2208328 2208528 - NA 1214 aimP CDS NA 2208855 2208980 - NA aimR CDS NA 2208994 2210154 - NA 1215 yopJ CDS NA 2210331 2210747 - NA yopI CDS NA 2210749 2211282 - NA sieB CDS NA 2211309 2211845 - NA yopG CDS NA 2211884 2212015 - NA yopF CDS NA 2212026 2212241 - NA yopE CDS NA 2212245 2212496 - NA 1216 yoyH CDS NA 2212567 2212746 + NA 1217 yoyI CDS NA 2212848 2213078 + NA 1218 yopD CDS NA 2213083 2213478 - NA yopC CDS NA 2213536 2214864 - NA 1219 yopB CDS ROG3697 2214972 2215199 - NA 1220 yopA CDS NA 2215460 2216776 - NA 1221 yonX CDS ROG2466 2217133 2217639 - NA 1222 yonV CDS NA 2217967 2219199 - NA 1223 yonU CDS ROG1628 2219281 2219469 - NA yoyJ CDS ROG6354 2219514 2219765 - NA spbT CDS NA 2219784 2219960 - NA 1224 yonS CDS ROG1691 2220335 2220946 - NA 1225 yonR CDS COG1476 2221061 2221387 - [K] Predicted transcriptional regulators 1226 yonP CDS NA 2222340 2222534 + NA yonO CDS NA 2222574 2225093 + NA 1227 hupN CDS COG0776 2225337 2225615 + [L] Bacterial nucleoid DNA-binding protein 1228 cds-SOX90566.1 CDS NA 2226176 2226346 + NA 1229 yonK CDS NA 2227297 2227488 + NA yonJ CDS NA 2227505 2228722 + NA 1230 yonI CDS NA 2228756 2229166 - NA 1231 yonH CDS NA 2229385 2229885 + NA 1232 yonG CDS NA 2229988 2230908 + NA yonF CDS ROG0786 2230895 2232664 + NA yonE CDS NA 2232682 2234202 + NA yonD CDS ROG1048 2234233 2235669 + NA yonC CDS NA 2235694 2236230 + NA yonB CDS NA 2236269 2237285 + NA yonA CDS NA 2237321 2237791 + NA yomZ CDS NA 2237806 2238201 + NA yomY CDS NA 2238198 2238452 + NA yomX CDS NA 2238436 2239086 + NA yomW CDS NA 2239083 2239589 + NA yomV CDS NA 2239586 2240296 + NA yomU CDS ROG1771 2240339 2241136 + NA youA CDS NA 2241154 2241765 + NA yomT CDS NA 2241765 2241992 + NA 1233 yomS CDS NA 2242056 2242412 + NA yomR CDS NA 2242414 2243631 + NA yomQ CDS NA 2243642 2243992 + NA yomP CDS ROG5248 2243989 2244180 + NA yomO CDS NA 2244230 2244730 + NA yomN CDS NA 2244714 2245133 + NA yomM CDS NA 2245147 2246148 + NA 1234 yozP CDS NA 2246151 2246480 - NA 1235 yomL CDS NA 2246656 2247342 - NA youB CDS NA 2247367 2247543 - NA 1236 yomK CDS COG5608 2247889 2248335 + [S] Conserved secreted protein 1237 yomJ CDS ROG1777 2248417 2249100 + NA cwlP CDS COG0741 2249154 2256011 + [M] Soluble lytic murein transglycosylase and related yomH CDS COG4722 2256062 2256820 + [S] Phage-related protein yomG CDS NA 2256832 2259459 + NA yomF CDS ROG5901 2259475 2260296 + NA yomE CDS COG4632 2260333 2262267 + [G] Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester 1238 yomD CDS ROG7813 2262437 2263261 + NA cds-SOX90567.1 CDS NA 2263251 2263469 + NA blyA CDS COG5632 2263489 2264592 + [M] N-acetylmuramoyl-L-alanine amidase 1239 bhlA CDS NA 2264680 2264892 + NA bhlB CDS ROG7335 2264903 2265169 + NA 1240 bdbB CDS COG1495 2265225 2265671 - [O] Disulfide bond formation protein DsbB sunS CDS COG1216 2265668 2266936 - [R] Predicted glycosyltransferases bdbA CDS COG0526 2266936 2267349 - [OC] Thiol-disulfide isomerase and thioredoxins sunT CDS COG2274 2267346 2269463 - [V] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal sunA CDS NA 2269521 2269691 - NA 1241 sunI CDS ROG8044 2269988 2270305 - NA 1242 uvrX CDS COG0389 2270407 2271657 - [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair yolD CDS ROG4480 2271650 2271982 - NA 1243 yolC CDS NA 2272156 2272491 + NA 1244 yolB CDS NA 2272534 2272890 - NA yolA CDS NA 2272896 2273363 - NA 1245 bsrG CDS NA 2273594 2273710 + NA 1246 yokL CDS COG1670 2273989 2274522 - [J] Acetyltransferases, including N-acetylases of ribosomal proteins yokK CDS ROG6489 2274558 2275136 - NA 1247 yokJ CDS NA 2275200 2275697 - NA yokI CDS COG5444 2275706 2277421 - [S] Uncharacterized conserved protein 1248 yokH CDS ROG8432 2277521 2278078 - NA 1249 yoyK CDS COG3464 2278340 2278456 + [L] Transposase and inactivated derivatives yoyK_2 NA NA 1250 yokG CDS ROG2823 2278602 2279675 - NA 1251 nukF CDS COG1525 2279977 2280867 + [L] Micrococcal nuclease (thermonuclease) homologs yokE CDS NA 2280881 2281363 + NA 1252 aacD CDS COG2746 2281667 2282485 + [V] Aminoglycoside N3'-acetyltransferase 1253 cds-SOX90568.1 CDS NA 2282505 2282639 - NA 1254 cds-SOX90569.1 CDS NA 2282801 2282956 - NA 1255 yokC CDS NA 2283136 2283651 - NA 1256 yokB CDS ROG3723 2283858 2284568 - NA 1257 sprA CDS COG1961 2284771 2286408 + [L] Site-specific recombinases, DNA invertase Pin homologs spsMc CDS COG1086 2286448 2287053 + [MG] Predicted nucleoside-diphosphate sugar epimerases 1258 msrB CDS COG0229 2287097 2287528 - [O] Conserved domain frequently associated with peptide msrA CDS COG0225 2287529 2288062 - [O] Peptide methionine sulfoxide reductase 1259 ypoP CDS COG1846 2288194 2288619 + [K] Transcriptional regulators 1260 dinF CDS COG0534 2288669 2290006 - [V] Na+-driven multidrug efflux pump 1261 ypmT CDS NA 2290078 2290272 - NA ypmS CDS COG4698 2290285 2290848 - [S] Uncharacterized protein conserved in bacteria ypmR CDS COG2755 2290858 2291625 - [E] Lysophospholipase L1 and related esterases scuA CDS COG1999 2291703 2292284 - [R] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis 1262 ypmP CDS ROG7392 2292432 2292683 - NA 1263 ilvA CDS COG1171 2292769 2294037 - [E] Threonine dehydratase 1264 silP CDS COG1221 2294286 2295281 + [KT] Transcriptional regulators containing an AAA-type ATPase yplQ CDS COG1272 2295302 2295943 + [R] Predicted membrane protein, hemolysin III homolog 1265 ypkP CDS NA 2295982 2296602 - NA dfrA CDS COG0262 2296603 2297109 - [H] Dihydrofolate reductase thyB CDS COG0207 2297106 2297900 - [F] Thymidylate synthase 1266 ypjQ CDS COG1267 2297984 2298517 - [I] Phosphatidylglycerophosphatase A and related proteins ypjP CDS ROG3402 2298535 2299146 - NA 1267 rsmJ CDS COG2521 2299406 2300179 - [R] Predicted archaeal methyltransferase brxA CDS ROG5917 2300221 2300655 - NA 1268 ilvD CDS COG0129 2300762 2302438 - [EG] Dihydroxyacid dehydratase/phosphogluconate dehydratase 1269 ypgR CDS COG1413 2302727 2303860 - [C] FOG: HEAT repeat hdhQ CDS COG1418 2303920 2304537 - [R] Predicted HD superfamily hydrolase bsaA CDS COG0386 2304553 2305035 - [O] Glutathione peroxidase 1270 metAA CDS COG1897 2305378 2306283 + [E] Homoserine trans-succinylase 1271 ugtP CDS ROG7291 2306514 2307662 + NA 1272 cds-SOX90570.1 CDS NA 2307743 2307889 + NA cspD CDS COG1278 2307905 2308105 + [K] Cold shock proteins 1273 degR CDS ROG5310 2308157 2308339 - NA 1274 ypzA CDS ROG6418 2308495 2308764 + NA 1275 ypeQ CDS ROG3719 2308792 2308974 - NA ypeP CDS ROG4502 2308967 2309647 - NA 1276 queP CDS COG1738 2309730 2310419 + [S] Uncharacterized conserved protein ypdQ CDS COG0328 2310419 2310817 + [L] Ribonuclease HI sspL CDS NA 2310859 2310987 + NA 1277 exnP CDS COG0258 2310995 2311885 - [L] 5'-3' exonuclease (including N-terminal domain of 1278 ypzF CDS NA 2311986 2312132 - NA 1279 ypbS CDS ROG6869 2312207 2312464 - NA 1280 dynA CDS COG0699 2312529 2316110 - [R] Predicted GTPases (dynamin-related) 1281 fbpC CDS NA 2316286 2316375 - NA 1282 bpsB CDS COG1755 2316446 2316952 - [S] Uncharacterized protein conserved in bacteria bpsA CDS COG3424 2316956 2318053 - [Q] Predicted naringenin-chalcone synthase 1283 pbuX CDS COG2233 2318127 2319443 - [F] Xanthine/uracil permeases xpt CDS COG0503 2319440 2320024 - [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 1284 ypwA CDS COG2317 2320355 2321860 - [E] Zn-dependent carboxypeptidase 1285 kdgT CDS ROG0711 2321972 2322964 - NA kdgA CDS COG0800 2323009 2323599 - [G] 2-keto-3-deoxy-6-phosphogluconate aldolase kdgK CDS COG0524 2323601 2324575 - [G] Sugar kinases, ribokinase family kdgR CDS COG1609 2324613 2325632 - [K] Transcriptional regulators 1286 kduI CDS COG3717 2325854 2326681 + [G] 5-keto 4-deoxyuronate isomerase kduD CDS COG1028 2326683 2327447 + [IQR] Dehydrogenases with different specificities (related to 1287 ypvA CDS COG1199 2327488 2329413 - [KL] Rad3-related DNA helicases 1288 yptA CDS NA 2329515 2329706 - NA 1289 ypzG CDS NA 2329870 2330022 + NA 1290 rlmKB CDS COG0116 2330075 2331232 - [L] Predicted N6-adenine-specific DNA methylase 1291 gpsB CDS COG3599 2331779 2332075 - [D] Cell division initiation protein ypsA CDS COG4474 2332153 2332782 - [S] Uncharacterized protein conserved in bacteria cotD CDS NA 2332784 2333011 - NA 1292 cds-SOX90571.1 CDS NA 2333095 2333223 - NA 1293 yprB CDS COG3359 2333324 2334565 - [L] Predicted exonuclease yprA CDS COG1205 2334581 2336830 - [R] Distinct helicase family with a unique 1294 ypqE CDS COG2190 2336933 2337439 - [G] Phosphotransferase system IIA components 1295 ypqA CDS NA 2337577 2337996 + NA 1296 yppG CDS NA 2338017 2338394 - NA 1297 yppF CDS NA 2338582 2338770 + NA 1298 yppE CDS ROG3508 2338809 2339180 - NA yppD CDS ROG0397 2339226 2339471 - NA 1299 sspM CDS NA 2339670 2339774 + NA 1300 yppC CDS ROG4020 2339799 2340761 - NA 1301 recU CDS COG3331 2340802 2341422 + [R] Penicillin-binding protein-related factor A, putative recombinase ponA CDS COG0744 2341444 2344188 + [M] Membrane carboxypeptidase (penicillin-binding protein) 1302 ypoC CDS ROG6793 2344264 2344758 - NA nth CDS COG0177 2344755 2345414 - [L] Predicted EndoIII-related endonuclease dnaD CDS COG3935 2345433 2346131 - [L] Putative primosome component and related proteins 1303 asnS CDS COG0017 2346224 2347516 - [J] Aspartyl/asparaginyl-tRNA synthetases aspB CDS COG0436 2347660 2348841 - [E] Aspartate/tyrosine/aromatic aminotransferase tseB CDS COG5353 2348864 2349349 - [S] Uncharacterized protein conserved in bacteria ypmA CDS ROG2183 2349358 2349528 - NA 1304 dinG CDS COG1199 2349671 2352466 - [KL] Rad3-related DNA helicases 1305 panD CDS COG0853 2352592 2352975 - [H] Aspartate 1-decarboxylase panC CDS COG0414 2352977 2353837 - [H] Panthothenate synthetase panB CDS COG0413 2353839 2354672 - [H] Ketopantoate hydroxymethyltransferase 1306 birA CDS COG0340 2354918 2355895 - [H] Biotin-(acetyl-CoA carboxylase) ligase cca CDS COG0617 2355880 2357073 - [J] tRNA nucleotidyltransferase/poly(A) polymerase bshA CDS COG0438 2357078 2358211 - [M] Glycosyltransferase bshBA CDS COG2120 2358208 2358918 - [S] Uncharacterized proteins, LmbE homologs mgsA CDS COG1803 2358911 2359324 - [G] Methylglyoxal synthase dapB CDS COG0289 2359340 2360143 - [E] Dihydrodipicolinate reductase ypjD CDS COG1694 2360155 2360490 - [R] Predicted pyrophosphatase 1307 ypjC CDS COG1284 2360630 2361502 + [S] Uncharacterized conserved protein 1308 ypjB CDS ROG4664 2361544 2362338 - NA 1309 ypjA CDS COG4347 2362407 2362964 - [S] Predicted membrane protein 1310 qcrC CDS COG1290 2363111 2363878 - [C] Cytochrome b subunit of the bc qcrB CDS COG1290 2363913 2364587 - [C] Cytochrome b subunit of the bc qcrA CDS COG0723 2364589 2365092 - [C] Rieske Fe-S protein 1311 ypiF CDS ROG3387 2365235 2365681 - NA ypiB CDS COG5582 2365736 2366275 - [S] Uncharacterized conserved protein 1312 ypiA CDS COG0457 2366347 2367618 - [R] FOG: TPR repeat 1313 aroA CDS COG0128 2367954 2369240 - [E] 5-enolpyruvylshikimate-3-phosphate synthase tyrA CDS COG0287 2369251 2370366 - [E] Prephenate dehydrogenase hisC CDS COG0079 2370415 2371497 - [E] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase trpA CDS COG0159 2371508 2372311 - [E] Tryptophan synthase alpha chain trpB CDS COG0133 2372304 2373506 - [E] Tryptophan synthase beta chain trpF CDS COG0135 2373487 2374134 - [E] Phosphoribosylanthranilate isomerase trpC CDS COG0134 2374139 2374888 - [E] Indole-3-glycerol phosphate synthase trpD CDS COG0547 2374881 2375897 - [E] Anthranilate phosphoribosyltransferase trpE CDS COG0147 2375869 2377416 - [EH] Anthranilate/para-aminobenzoate synthases component I aroH CDS COG4401 2377632 2378015 - [E] Chorismate mutase aroB CDS COG0337 2378012 2379100 - [E] 3-dehydroquinate synthetase aroF CDS COG0082 2379100 2380272 - [E] Chorismate synthase 1314 cheR CDS COG1352 2380347 2381117 - [NT] Methylase of chemotaxis methyl-accepting proteins 1315 ndk CDS COG0105 2381354 2381803 - [F] Nucleoside diphosphate kinase hepT CDS COG0142 2381919 2382965 - [H] Geranylgeranyl pyrophosphate synthase menG CDS COG2226 2382907 2383608 - [H] Methylase involved in ubiquinone/menaquinone biosynthesis hepS CDS ROG2690 2383615 2384370 - NA 1316 mtrB CDS ROG0913 2384534 2384761 - NA folEA CDS COG0302 2384783 2385355 - [H] GTP cyclohydrolase I 1317 hbs CDS COG0776 2385543 2385821 - [L] Bacterial nucleoid DNA-binding protein 1318 spoIVA CDS ROG0086 2386195 2387673 - NA 1319 yphF CDS ROG3435 2387854 2388588 - NA yphE CDS NA 2388610 2388813 - NA 1320 gpsA CDS COG0240 2389151 2390188 - [C] Glycerol-3-phosphate dehydrogenase der CDS COG1160 2390206 2391516 - [R] Predicted GTPases 1321 ypzH CDS ROG1887 2391670 2391864 - NA yphB CDS ROG0956 2391861 2392754 - NA yphA CDS ROG5594 2392751 2393350 - NA 1322 ypzI CDS NA 2393428 2393559 + NA 1323 fni CDS COG1304 2393602 2394651 - [C] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy rpfA CDS COG0539 2394664 2395812 - [J] Ribosomal protein S1 cmk CDS COG0283 2396045 2396719 - [F] Cytidylate kinase 1324 ypfB CDS ROG2282 2396798 2396974 - NA dgrA CDS COG5581 2397019 2397672 - [M] Predicted glycosyltransferase 1325 sleC CDS ROG0168 2397765 2399117 - NA sleB CDS COG3773 2399152 2400069 - [M] Cell wall hydrolyses involved in spore 1326 prsW CDS COG2339 2400208 2400864 - [S] Predicted membrane protein 1327 ypdA CDS COG0644 2400984 2401958 - [C] Dehydrogenases (flavoproteins) gudB CDS COG0334 2402067 2403350 - [E] Glutamate dehydrogenase/leucine dehydrogenase 1328 mecB CDS COG4862 2403506 2404090 - [OTN] Negative regulator of genetic competence, sporulation 1329 ypbG CDS COG1408 2404249 2405028 - [R] Predicted phosphohydrolases 1330 ypbF CDS ROG6232 2405114 2405557 - NA 1331 ypbE CDS COG1388 2405620 2406342 - [M] FOG: LysM repeat ypbD CDS COG1266 2406293 2406862 - [R] Predicted metal-dependent membrane protease 1332 recS CDS COG0514 2406922 2408412 - [L] Superfamily II DNA helicase gmmB CDS COG4955 2408405 2409463 - [S] Uncharacterized protein conserved in bacteria 1333 fer CDS COG1141 2409729 2409977 + [C] Ferredoxin 1334 fmnP CDS COG3601 2410017 2410589 - [S] Predicted membrane protein 1335 serA CDS COG0111 2411086 2412663 + [HE] Phosphoglycerate dehydrogenase and related dehydrogenases 1336 aroC CDS COG0710 2412706 2413473 - [E] 3-dehydroquinate dehydratase 1337 rsiX CDS NA 2413585 2414691 - NA sigX CDS COG1595 2414627 2415211 - [K] DNA-directed RNA polymerase specialized sigma subunit, 1338 resE CDS COG0642 2415415 2417184 - [T] Signal transduction histidine kinase resD CDS COG0745 2417181 2417903 - [TK] Response regulators consisting of a CheY-like resC CDS COG0755 2417984 2419159 - [O] ABC-type transport system involved in cytochrome resB CDS COG1333 2419179 2420807 - [O] ResB protein required for cytochrome c resA CDS COG1225 2420804 2421343 - [O] Peroxiredoxin 1339 rluB CDS COG1187 2421438 2422172 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 1340 spmB CDS COG0700 2422264 2422800 - [S] Uncharacterized membrane protein spmA CDS COG2715 2422805 2423395 - [R] Uncharacterized membrane protein, required for spore dacB CDS COG1686 2423383 2424531 - [M] D-alanyl-D-alanine carboxypeptidase 1341 ypuI CDS NA 2424654 2425193 - NA spcB CDS COG1386 2425248 2425841 - [K] Predicted transcriptional regulator containing the HTH scpA CDS COG1354 2425831 2426586 - [S] Uncharacterized conserved protein 1342 ypuF CDS COG1547 2426867 2427391 + [S] Uncharacterized conserved protein 1343 ypzK CDS ROG0764 2427405 2427779 - NA 1344 ribH CDS COG0054 2427892 2428356 - [H] Riboflavin synthase beta-chain ribBA CDS COG0807 2428389 2429585 - [H] GTP cyclohydrolase II ribE CDS COG0307 2429600 2430247 - [H] Riboflavin synthase alpha chain ribD CDS COG1985 2430258 2431343 - [H] Pyrimidine reductase, riboflavin biosynthesis 1345 ypuD CDS NA 2431737 2432081 - NA 1346 sipS CDS COG0681 2432316 2432870 - [U] Signal peptidase I 1347 ypzC CDS NA 2433137 2433373 + NA 1348 ypzJ CDS COG3478 2433316 2433522 - [R] Predicted nucleic-acid-binding protein containing a Zn-ribbon 1349 ypuC CDS COG0671 2433878 2434165 - [I] Membrane-associated phospholipid phosphatase ypuC_2 ROG0639 NA ypuB CDS COG0586 2434143 2434346 - [S] Uncharacterized membrane-associated protein 1350 ypzD CDS COG4995 2435012 2435224 + [S] Uncharacterized protein conserved in bacteria 1351 ppiB CDS COG0652 2435360 2435791 - [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin 1352 ypuA CDS COG4086 2436045 2436917 + [S] Predicted secreted protein 1353 lysA CDS COG0019 2436947 2438266 - [E] Diaminopimelate decarboxylase 1354 spoVAF CDS ROG6014 2438372 2439853 - NA spoVAEA CDS ROG0020 2439804 2440415 - NA spoVAEB CDS ROG0020 2440423 2440773 - NA spoVAD CDS ROG0072 2440775 2441791 - NA spoVAC CDS ROG0067 2441804 2442256 - NA spoVAB CDS ROG5063 2442269 2442694 - NA spoVAA CDS ROG5072 2442684 2443304 - NA 1355 sigF CDS COG1191 2443429 2444196 - [K] DNA-directed RNA polymerase specialized sigma subunit spoIIAB CDS COG2172 2444208 2444648 - [T] Anti-sigma regulatory factor (Ser/Thr protein kinase) spoIIAA CDS COG1366 2444645 2444998 - [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma dacF CDS COG1686 2445094 2446263 - [M] D-alanyl-D-alanine carboxypeptidase 1356 pupG CDS COG0005 2446418 2447233 - [F] Purine nucleoside phosphorylase deoB CDS COG1015 2447246 2448430 - [G] Phosphopentomutase ripX CDS COG4974 2448591 2449481 - [L] Site-specific recombinase XerD yqzK CDS ROG5337 2449489 2449716 - NA 1357 fur CDS COG0735 2449841 2450290 - [P] Fe2+/Zn2+ uptake regulation proteins 1358 spoIIM CDS COG1300 2450403 2451047 - [S] Uncharacterized membrane protein 1359 yqkK CDS NA 2451148 2451363 - NA 1360 mleA CDS COG0281 2451463 2452782 - [C] Malic enzyme mleN CDS COG1757 2452800 2454206 - [C] Na+/H+ antiporter 1361 ansB CDS COG1027 2454347 2455774 - [E] Aspartate ammonia-lyase ansA CDS COG0252 2455819 2456808 - [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 1362 ansR CDS COG1476 2456990 2457340 + [K] Predicted transcriptional regulators 1363 yqxK CDS COG1379 2457349 2458512 - [S] Uncharacterized conserved protein nudF CDS COG0494 2458509 2459066 - [LR] NTP pyrophosphohydrolases including oxidative damage repair 1364 mciZ CDS NA 2459141 2459263 + NA 1365 yqkF CDS COG0667 2459326 2460246 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1366 yqkE CDS NA 2460278 2460502 - NA 1367 yqkD CDS COG1073 2460664 2461581 + [R] Hydrolases of the alpha/beta superfamily 1368 yqkC CDS NA 2461621 2461860 - NA yqkB CDS COG4918 2461873 2462196 - [S] Uncharacterized protein conserved in bacteria yqkA CDS COG2320 2462193 2463224 - [S] Uncharacterized conserved protein yqjZ CDS COG2329 2463217 2463561 - [R] Uncharacterized enzyme involved in biosynthesis of yqjY CDS ROG2297 2463571 2464041 - NA 1369 yqjX CDS ROG4480 2464227 2464565 - NA polYB CDS COG0389 2464562 2465800 - [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair 1370 yqzH CDS NA 2465966 2466172 + NA 1371 yqjV CDS COG0477 2466721 2467953 + [GEPR] Permeases of the major facilitator superfamily yqjU CDS NA 2467800 2468162 + NA 1372 yqjT CDS COG0346 2468159 2468545 - [E] Lactoylglutathione lyase and related lyases coaA CDS COG1072 2468549 2469508 - [H] Panthothenate kinase 1373 dsdA CDS COG3048 2469580 2470926 - [E] D-serine dehydratase 1374 yqjQ CDS COG0300 2471002 2471781 - [R] Short-chain dehydrogenases of various substrate specificities yqjP CDS COG1235 2471787 2472746 - [R] Metal-dependent hydrolases of the beta-lactamase superfamily 1375 proI CDS COG0345 2473151 2473987 + [E] Pyrroline-5-carboxylate reductase 1376 yqjN CDS COG4187 2474028 2475671 - [E] Arginine degradation protein (predicted deacylase) 1377 yqjM CDS COG1902 2475843 2476859 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family yqjL CDS COG0596 2476969 2477730 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1378 rpmGCc CDS COG0267 2477777 2477899 - [J] Ribosomal protein L33 rpmGCn CDS NA 2477892 2477924 - NA 1379 rnz CDS COG1234 2478006 2478929 - [R] Metal-dependent hydrolases of the beta-lactamase superfamily 1380 zwf CDS COG0364 2479156 2480625 + [G] Glucose-6-phosphate 1-dehydrogenase 1381 gndA CDS COG0362 2480750 2482159 - [G] 6-phosphogluconate dehydrogenase 1382 polYA CDS COG0389 2482269 2483513 - [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair 1383 mifM CDS NA 2483586 2483873 + NA oxaAB CDS COG0706 2483904 2484731 + [U] Preprotein translocase subunit YidC 1384 yqjF CDS COG3361 2484911 2485639 + [S] Uncharacterized conserved protein 1385 yqjE CDS COG2195 2485680 2486795 - [E] Di- and tripeptidases yqjD CDS COG4799 2486813 2488336 - [I] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha yqjC CDS ROG2119 2488329 2488751 - NA 1386 yqjB CDS COG1376 2488953 2489483 - [S] Uncharacterized protein conserved in bacteria 1387 yqjA CDS COG4129 2489535 2490503 - [S] Predicted membrane protein 1388 artR CDS COG1126 2490574 2491296 - [E] ABC-type polar amino acid transport system, artQ CDS COG0765 2491289 2491948 - [E] ABC-type amino acid transport system, permease artP CDS COG0834 2492029 2492796 - [ET] ABC-type amino acid transport/signal transduction systems, 1389 brxB CDS ROG0290 2493064 2493501 - NA 1390 bmrU CDS COG1597 2493662 2494555 + [IR] Sphingosine kinase and enzymes related to bmr CDS COG0477 2494656 2495825 + [GEPR] Permeases of the major facilitator superfamily bmrR CDS COG4978 2495898 2496734 + [KT] Transcriptional regulator, effector-binding domain/component 1391 bkdB CDS COG0508 2496796 2498070 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) bkdAB CDS COG0022 2498093 2499076 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, bkdAA CDS COG1071 2499090 2500082 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, lpdV CDS COG1249 2500104 2501528 - [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) buk CDS COG3426 2501549 2502640 - [C] Butyrate kinase bcd CDS COG0334 2502659 2503753 - [E] Glutamate dehydrogenase/leucine dehydrogenase ptb CDS COG0416 2503765 2504664 - [I] Fatty acid/phospholipid biosynthesis enzyme 1392 bkdR CDS COG3829 2504789 2506867 - [KT] Transcriptional regulator containing PAS, AAA-type ATPase, 1393 yqzF CDS ROG3982 2507020 2507256 + NA 1394 mmgF CDS COG2513 2507298 2508203 - [G] PEP phosphonomutase and related enzymes mmgE CDS COG2079 2508221 2509639 - [R] Uncharacterized protein involved in propionate catabolism mmgD CDS COG0372 2509654 2510772 - [C] Citrate synthase mmgC CDS COG1960 2510806 2511945 - [I] Acyl-CoA dehydrogenases mmgB CDS COG1250 2511973 2512836 - [I] 3-hydroxyacyl-CoA dehydrogenase mmgA CDS COG0183 2512861 2514042 - [I] Acetyl-CoA acetyltransferase 1395 glpQ CDS COG0584 2514169 2514900 - [C] Glycerophosphoryl diester phosphodiesterase yqiI CDS COG0860 2514979 2515599 - [M] N-acetylmuramoyl-L-alanine amidase yqiH CDS ROG4469 2515614 2515907 - NA 1396 cds-SOX90573.1 CDS NA 2516215 2516367 + NA 1397 yqiG CDS COG1902 2516440 2517558 + [C] NADH:flavin oxidoreductases, Old Yellow Enzyme family 1398 spo0A CDS COG2197 2518023 2518826 - [TK] Response regulator containing a CheY-like receiver 1399 spoIVB CDS COG0750 2519102 2520382 - [M] Predicted membrane-associated Zn-dependent proteases 1 recN CDS COG0497 2520557 2522287 - [L] ATPase involved in DNA repair argR CDS COG1438 2522324 2522773 - [K] Arginine repressor yqxC CDS COG1189 2522871 2523716 - [J] Predicted rRNA methylase dxs CDS COG1154 2523713 2525614 - [HI] Deoxyxylulose-5-phosphate synthase ispA_2 COG0142 [H] Geranylgeranyl pyrophosphate synthase xseB CDS COG1722 2526669 2526923 - [L] Exonuclease VII small subunit xseA CDS COG1570 2526920 2528266 - [L] Exonuclease VII, large subunit folD CDS COG0190 2528404 2529255 - [H] 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase nusB CDS COG0781 2529267 2529662 - [K] Transcription termination factor yqhY CDS COG1302 2529926 2530333 - [S] Uncharacterized protein conserved in bacteria accC CDS COG0439 2530354 2531706 - [I] Biotin carboxylase accB CDS COG0511 2531718 2532197 - [I] Biotin carboxyl carrier protein 1400 spoIIIAH CDS ROG0155 2532353 2533009 - NA spoIIIAG CDS ROG0088 2533010 2533699 - NA spoIIIAF CDS ROG0662 2533692 2534312 - NA spoIIIAE CDS ROG0085 2534326 2535525 - NA spoIIIAD CDS ROG0096 2535544 2535945 - NA spoIIIAC CDS ROG0171 2535952 2536158 - NA spoIIIAB CDS ROG0106 2536181 2536696 - NA spoIIIAA CDS COG3854 2536690 2537613 - [S] Uncharacterized protein conserved in bacteria 1401 yqhV CDS ROG1681 2537689 2537970 - NA 1402 efp CDS COG0231 2538115 2538672 - [J] Translation elongation factor P (EF-P)/translation initiation papA CDS COG0006 2538697 2539758 - [E] Xaa-Pro aminopeptidase yqhS CDS COG0757 2539755 2540201 - [E] 3-dehydroquinate dehydratase II 1403 yqhR CDS ROG4130 2540288 2540824 - NA 1404 yqhQ CDS COG3872 2541051 2542007 + [R] Predicted metal-dependent enzyme yqhP CDS ROG3899 2542047 2542442 + NA 1405 yqhO CDS COG1752 2542439 2543314 - [R] Predicted esterase of the alpha-beta hydrolase 1406 mntR CDS COG1321 2543440 2543868 - [K] Mn-dependent transcriptional regulator lipM CDS COG0095 2543968 2544804 - [H] Lipoate-protein ligase A 1407 yqhL CDS COG0607 2544995 2545375 + [P] Rhodanese-related sulfurtransferase 1408 gcvPB CDS COG1003 2545410 2546876 - [E] Glycine cleavage system protein P (pyridoxal-binding), gcvPA CDS COG0403 2546869 2548215 - [E] Glycine cleavage system protein P (pyridoxal-binding), gcvT CDS COG0404 2548245 2549333 - [E] Glycine cleavage system T protein (aminomethyltransferase) 1409 yqhH CDS COG0553 2549775 2551448 + [KL] Superfamily II DNA/RNA helicases, SNF2 family yqhG CDS ROG3657 2551469 2552263 + NA 1410 sinI CDS NA 2552446 2552619 + NA sinR CDS COG1396 2552653 2552988 + [K] Predicted transcriptional regulators 1411 tasA CDS ROG8181 2553081 2553866 - NA 1412 sipW CDS ROG1409 2553930 2554502 - NA tapA CDS NA 2554486 2555247 - NA 1413 yqzG CDS NA 2555519 2555845 + NA 1414 spoIIT CDS COG0572 2555887 2556066 - [F] Uridine kinase 1415 comGG CDS NA 2556137 2556511 - NA comGF CDS COG4940 2556512 2556895 - [U] Competence protein ComGF comGE CDS NA 2556921 2557268 - NA comGD CDS COG4795 2557252 2557683 - [U] Type II secretory pathway, component PulJ comGC CDS COG4537 2557673 2557969 - [U] Competence protein ComGC comGB CDS COG1580 2557983 2558954 - [N] Flagellar basal body-associated protein comGA CDS COG2804 2559007 2560077 - [NU] Type II secretory pathway, ATPase PulE/Tfp 1416 yqxL CDS COG0598 2560489 2561442 - [P] Mg2+ and Co2+ transporters 1417 yqhB CDS COG1253 2561585 2562913 + [R] Hemolysins and related proteins containing CBS 1418 rsbRD CDS COG1366 2562966 2563802 - [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma 1419 trnSL-Gln1 tRNA NA 2563889 2563959 + NA 1420 mgsR CDS COG1393 2564026 2564406 - [P] Arsenate reductase and related proteins, glutaredoxin 1421 yqgY CDS ROG4002 2564638 2564883 + NA 1422 yqgX CDS COG0491 2564923 2565558 - [R] Zn-dependent hydrolases, including glyoxylases 1423 yqgW CDS COG3307 2565715 2565888 + [M] Lipid A core - O-antigen ligase 1424 yqgV CDS COG0011 2565920 2566234 - [S] Uncharacterized conserved protein yqgU CDS ROG5561 2566237 2567298 - NA yqgT CDS COG2866 2567360 2568490 - [E] Predicted carboxypeptidase 1425 ltaSC CDS COG1368 2568573 2570489 - [M] Phosphoglycerol transferase and related proteins, alkaline 1426 glcK CDS COG1940 2570606 2571571 - [KG] Transcriptional regulator/sugar kinase yqgQ CDS COG4483 2571582 2571797 - [S] Uncharacterized protein conserved in bacteria glpG CDS COG0705 2571907 2573430 - [R] Uncharacterized membrane protein (homolog of Drosophila 1427 yqgO CDS NA 2573520 2573693 - NA 1428 folN CDS COG0212 2573760 2574323 - [H] 5-formyltetrahydrofolate cyclo-ligase rpmGA CDS COG0267 2574408 2574557 - [J] Ribosomal protein L33 1429 yqgM CDS COG0438 2574641 2575720 - [M] Glycosyltransferase yqgL CDS NA 2575717 2576187 - NA 1430 yqzD CDS ROG7191 2576367 2576720 + NA yqzC CDS ROG4462 2576717 2577181 + NA 1431 pstBB CDS COG1117 2577210 2577992 - [P] ABC-type phosphate transport system, ATPase component pstBA CDS COG1117 2578003 2578812 - [P] ABC-type phosphate transport system, ATPase component pstA CDS COG0581 2578833 2579717 - [P] ABC-type phosphate transport system, permease component pstC CDS COG0573 2579717 2580646 - [P] ABC-type phosphate transport system, permease component pstS CDS COG0226 2580715 2581617 - [P] ABC-type phosphate transport system, periplasmic component 1432 pbpA CDS COG0768 2581771 2583921 - [M] Cell division protein FtsI/penicillin-binding protein 2 1433 yqgE CDS NA 2584035 2585327 - NA 1434 sodA CDS COG0605 2585434 2586042 - [P] Superoxide dismutase 1435 yqgC CDS COG2839 2586221 2586703 - [S] Uncharacterized protein conserved in bacteria 1436 yqgB CDS ROG3118 2586813 2587580 + NA 1437 yqgA CDS NA 2587996 2588424 - NA 1438 yqfZ CDS ROG3601 2588701 2589000 + NA 1439 ispG CDS COG0821 2589123 2590256 + [I] Enzyme involved in the deoxyxylulose pathway 1440 yqfX CDS ROG3557 2590282 2590671 - NA 1441 yqfW CDS COG5663 2590804 2591385 + [S] Uncharacterized conserved protein 1442 zur CDS COG0735 2591428 2591865 - [P] Fe2+/Zn2+ uptake regulation proteins 1443 yqfU CDS COG1284 2592003 2592884 - [S] Uncharacterized conserved protein 1444 yqfT CDS ROG3701 2593000 2593254 + NA 1445 nfo CDS COG0648 2593281 2594174 - [L] Endonuclease IV cshB CDS COG0513 2594184 2595500 - [LKJ] Superfamily II DNA and RNA helicases 1446 yqfQ CDS ROG8009 2595669 2596412 + NA 1447 ispH CDS COG0761 2596535 2597479 + [IM] Penicillin tolerance protein 1448 yqfO CDS COG0327 2597502 2598623 - [S] Uncharacterized conserved protein trmK CDS COG2384 2598616 2599266 - [R] Predicted SAM-dependent methyltransferase 1449 cccA CDS ROG3636 2599523 2599885 - NA 1450 sigA CDS COG0568 2600214 2601329 - [K] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) dnaG CDS COG0358 2601528 2603339 - [L] DNA primase (bacterial type) 1451 antE CDS NA 2602979 2603275 + NA 1452 yqxD CDS COG1671 2603373 2603867 - [S] Uncharacterized protein conserved in bacteria 1453 ppsR CDS COG1806 2604121 2604933 - [S] Uncharacterized protein conserved in bacteria ccpN CDS COG0517 2604959 2605597 - [R] FOG: CBS domain 1454 glyS CDS COG0751 2605730 2607769 - [J] Glycyl-tRNA synthetase, beta subunit glyQ CDS COG0752 2607762 2608649 - [J] Glycyl-tRNA synthetase, alpha subunit 1455 recO CDS COG1381 2608946 2609713 - [L] Recombinational DNA repair protein (RecF pathway) yqzL CDS NA 2609750 2609893 - NA 1456 era CDS COG1159 2610041 2610946 - [R] GTPase cdd CDS COG0295 2610927 2611337 - [F] Cytidine deaminase 1457 unpK CDS COG0818 2611456 2611827 - [M] Diacylglycerol kinase rnrY CDS COG0319 2611808 2612281 - [R] Predicted metal-dependent hydrolase pgpH CDS COG1480 2612282 2614417 - [R] Predicted membrane-associated HD superfamily hydrolase phoH CDS COG1702 2614496 2615455 - [T] Phosphate starvation-inducible protein PhoH, predicted ATPase yqfD CDS ROG0075 2615452 2616648 - NA yqfC CDS ROG0112 2616667 2616948 - NA yqfB CDS COG2948 2617005 2617424 - [U] Type IV secretory pathway, VirB10 components floA CDS COG4864 2617449 2618444 - [S] Uncharacterized protein conserved in bacteria nfeDA CDS COG1030 2618466 2619779 - [O] Membrane-bound serine protease (ClpP class) 1458 yqeY CDS COG1610 2619910 2620356 - [S] Uncharacterized conserved protein rpsU CDS COG0828 2620371 2620544 - [J] Ribosomal protein S21 1459 yqeW CDS COG1283 2620717 2621640 + [P] Na+/phosphate symporter 1460 mtaB CDS COG0621 2621677 2623032 - [J] 2-methylthioadenine synthetase rsmE CDS COG1385 2623032 2623802 - [S] Uncharacterized protein conserved in bacteria prmA CDS COG2264 2623825 2624760 - [J] Ribosomal protein L11 methylase dnaJ CDS COG0484 2624785 2625912 - [O] DnaJ-class molecular chaperone with C-terminal Zn dnaK CDS COG0443 2626112 2627947 - [O] Molecular chaperone grpE CDS COG0576 2627971 2628534 - [O] Molecular chaperone GrpE (heat shock protein) hrcA CDS COG1420 2628606 2629637 - [K] Transcriptional regulator of heat shock gene hemN CDS COG0635 2629718 2630857 - [H] Coproporphyrinogen III oxidase and related Fe-S lepA CDS COG0481 2630910 2632748 - [M] Membrane GTPase LepA 1461 yqxA CDS NA 2632882 2633220 - NA spoIIP CDS ROG0070 2633237 2634442 - NA gpr CDS ROG0083 2634505 2635611 - NA 1462 rpsT CDS COG0268 2635815 2636081 + [J] Ribosomal protein S20 1463 holA CDS COG1466 2636096 2637139 - [L] DNA polymerase III, delta subunit cds-SOX90574.1 CDS NA 2637179 2637328 - NA 1464 yqzM CDS NA 2637369 2637503 + NA 1465 comEC CDS COG0658 2637543 2639873 - [R] Predicted membrane metal-binding protein comEB CDS COG2131 2639877 2640446 - [F] Deoxycytidylate deaminase comEA CDS COG1555 2640513 2641130 - [L] DNA uptake protein and related DNA-binding 1466 comER CDS COG0345 2641214 2642035 + [E] Pyrroline-5-carboxylate reductase 1467 yqeM CDS COG0500 2642101 2642844 - [QR] SAM-dependent methyltransferases rsfS CDS COG0799 2642841 2643197 - [S] Uncharacterized homolog of plant Iojap protein yqeK CDS COG1713 2643215 2643775 - [H] Predicted HD superfamily hydrolase involved in nadD CDS COG1057 2643765 2644334 - [H] Nicotinic acid mononucleotide adenylyltransferase yqeI CDS COG1534 2644346 2644636 - [J] Predicted RNA-binding protein containing KH domain, aroE CDS COG0169 2644630 2645472 - [E] Shikimate 5-dehydrogenase rgpH CDS COG1161 2645490 2646590 - [R] Predicted GTPases yqeG CDS COG2179 2646594 2647112 - [R] Predicted hydrolase of the HAD superfamily 1468 sda CDS NA 2647456 2647614 + NA 1469 yqeF CDS COG2755 2647920 2648651 - [E] Lysophospholipase L1 and related esterases 1470 cwlH CDS COG5632 2648903 2649655 - [M] N-acetylmuramoyl-L-alanine amidase 1471 yqeD CDS COG0398 2649842 2650468 + [S] Uncharacterized conserved protein 1472 yqeC CDS COG1023 2650487 2651380 - [G] Predicted 6-phosphogluconate dehydrogenase 1473 yqeB CDS NA 2651632 2652354 + NA 1474 nucB CDS COG3065 2652387 2652797 - [M] Starvation-inducible outer membrane lipoprotein 1475 sigKn CDS COG1191 2652993 2653463 + [K] DNA-directed RNA polymerase specialized sigma subunit 1476 spoIVCA CDS COG1961 2653371 2654873 - [L] Site-specific recombinases, DNA invertase Pin homologs 1477 arsC CDS COG0394 2655322 2655741 - [T] Protein-tyrosine-phosphatase arsB CDS COG0798 2655753 2656793 - [P] Arsenite efflux pump ACR3 and related yqcK CDS COG3607 2656816 2657256 - [R] Predicted lactoylglutathione lyase arsR CDS COG0640 2657317 2657634 - [K] Predicted transcriptional regulators 1478 yqcI CDS COG3403 2658006 2658770 - [S] Uncharacterized conserved protein 1479 rapE CDS COG0457 2659213 2660340 + [R] FOG: TPR repeat phrE CDS NA 2660330 2660464 + NA 1480 yqzI CDS NA 2660574 2660732 + NA 1481 rttG CDS COG5444 2661102 2662697 + [S] Uncharacterized conserved protein rttF CDS ROG5580 2662712 2663290 + NA 1482 cds-SOX90575.1 CDS NA 2663408 2663554 + NA 1483 yqxJ CDS NA 2663551 2663913 - NA yqxI CDS NA 2663929 2664408 - NA 1484 cwlA CDS COG5632 2664573 2665391 - [M] N-acetylmuramoyl-L-alanine amidase yqxH CDS COG4824 2665436 2665858 - [R] Phage-related holin (Lysis protein) yqxG CDS NA 2665903 2666796 - NA 1485 yqcE CDS NA 2666884 2667048 - NA yqcD CDS NA 2667045 2667380 - NA yqcC CDS ROG3785 2667390 2668490 - NA yqcB CDS ROG6880 2668493 2668765 - NA yqcA CDS ROG2742 2668762 2669340 - NA yqbT CDS COG3299 2669324 2670370 - [S] Uncharacterized homolog of phage Mu protein yqbS CDS ROG1230 2670363 2670788 - NA yqbR CDS ROG5517 2670801 2671064 - NA yqbQ CDS ROG1377 2671061 2672041 - NA yqbP CDS COG1652 2672054 2672713 - [S] Uncharacterized protein containing LysM domain yqbO CDS COG5280 2672706 2677463 - [S] Phage-related minor tail protein yqbNc CDS NA 2677466 2677657 - NA yqbNn CDS ROG2256 2677657 2678094 - NA 1486 txpA CDS NA 2678240 2678419 + NA 1487 bsrH CDS NA 2678799 2678888 + NA 1488 yqbM CDS ROG1260 2679142 2679585 - NA yqbK CDS ROG0742 2679588 2680988 - NA yqzN CDS NA 2680989 2681180 - NA yqbJ CDS ROG2798 2681177 2681614 - NA yqbI CDS ROG3947 2681627 2682130 - NA yqbH CDS ROG8013 2682127 2682489 - NA yqbG CDS NA 2682486 2682881 - NA yqbF CDS NA 2682885 2683196 - NA yqbE CDS NA 2683207 2684142 - NA yqbD CDS NA 2684161 2685129 - NA yqbC CDS ROG7047 2685162 2685815 - NA yqbB CDS NA 2685856 2686773 - NA yqbA CDS COG5518 2686770 2688302 - [R] Bacteriophage capsid portal protein yqaT CDS COG1783 2688306 2689601 - [R] Phage terminase large subunit yqaS CDS COG5484 2689594 2690313 - [S] Uncharacterized conserved protein 1489 yqaR CDS NA 2690381 2690845 - NA 1490 yqaQ CDS COG4584 2690989 2691444 - [L] Transposase and inactivated derivatives 1491 yqaP CDS COG3212 2691642 2692571 + [S] Predicted membrane protein 1492 yqaO CDS NA 2692645 2692851 - NA 1493 yqaN CDS COG4570 2692933 2693361 - [L] Holliday junction resolvase 1494 yqzO CDS NA 2693457 2693606 - NA sknM CDS COG1484 2693597 2694538 - [L] DNA replication protein yqaL CDS COG3935 2694420 2695097 - [L] Putative primosome component and related proteins yqaK CDS COG3723 2695173 2696027 - [L] Recombinational DNA repair protein (RecE pathway) yqaJ CDS COG5377 2696030 2696989 - [L] Phage-related protein, predicted endonuclease 1495 yqaI CDS NA 2697095 2697289 - NA cds-SOX90577.1 CDS NA 2697249 2697422 - NA sknH CDS NA 2697419 2697676 - NA yqaG CDS COG2932 2697673 2698242 - [K] Predicted transcriptional regulator 1496 yqdA CDS NA 2698316 2698456 - NA yqaF CDS COG1396 2698486 2698716 - [K] Predicted transcriptional regulators 1497 sknR CDS COG2932 2698893 2699243 + [K] Predicted transcriptional regulator 1498 yqaD CDS ROG1944 2699510 2699677 - NA 1499 yqaC CDS ROG7231 2700033 2700569 - NA 1500 yqaB CDS ROG6406 2700838 2701356 + NA sigKc CDS COG1191 2701338 2701754 + [K] DNA-directed RNA polymerase specialized sigma subunit cds-SOX90578.1 CDS NA 2701754 2701870 + NA 1501 yrkS CDS NA 2701979 2702143 - NA 1502 psiE CDS COG3223 2702688 2703104 - [S] Predicted membrane protein yrkQ CDS NA 2703150 2704448 - NA yrkP CDS COG0745 2704435 2705130 - [TK] Response regulators consisting of a CheY-like 1503 yrkO CDS COG2311 2705398 2706615 + [S] Predicted membrane protein cds-SOX90579.1 CDS NA 2706534 2706782 + NA 1504 yrkN CDS COG0454 2707127 2707684 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1505 yrkL CDS COG2249 2708175 2708699 - [R] Putative NADPH-quinone reductase (modulator of drug 1506 yrkK CDS ROG2739 2708943 2709419 - NA 1507 yrkJ CDS COG0730 2710002 2710787 - [R] Predicted permeases yrkI CDS COG0425 2710848 2711075 - [O] Predicted redox protein, regulator of disulfide yrkH CDS COG0491 2711109 2712242 - [R] Zn-dependent hydrolases, including glyoxylases yrkF CDS COG0607 2712577 2713134 - [P] Rhodanese-related sulfurtransferase yrkE CDS COG2210 2713320 2713802 - [S] Uncharacterized conserved protein 1508 yrkD CDS COG1937 2713949 2714140 - [S] Uncharacterized protein conserved in bacteria 1509 yrzM CDS NA 2714231 2714548 - NA yrzN CDS NA 2714590 2714805 - NA 1510 yrkC CDS COG0662 2714933 2715493 - [G] Mannose-6-phosphate isomerase cds-SOX90580.1 CDS NA 2715510 2715686 - NA yrkB CDS NA 2715719 2715865 - NA 1511 bltR CDS COG4978 2716035 2716856 - [KT] Transcriptional regulator, effector-binding domain/component 1512 blt CDS COG0477 2716973 2718175 + [GEPR] Permeases of the major facilitator superfamily bltD CDS COG0454 2718344 2718802 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1513 yrkA CDS COG1253 2718959 2720263 - [R] Hemolysins and related proteins containing CBS 1514 yrzO CDS NA 2720526 2720669 - NA yrdR CDS COG0697 2720687 2721652 - [GER] Permeases of the drug/metabolite transporter (DMT) 1515 czcR CDS COG0583 2721778 2722644 + [K] Transcriptional regulator 1516 yrdP CDS COG3486 2722767 2723804 - [Q] Lysine/ornithine N-monooxygenase 1517 czcD CDS COG1230 2723892 2724827 - [P] Co/Zn/Cd efflux system component 1518 yrdN CDS ROG0074 2725114 2725503 - NA 1519 gltR CDS COG0583 2725837 2726727 + [K] Transcriptional regulator 1520 yrdK CDS NA 2726885 2727202 - NA brnQ CDS COG1114 2727160 2728482 - [E] Branched-chain amino acid permeases azlD CDS COG1687 2728647 2728979 - [E] Predicted branched-chain amino acid permeases (azaleucine azlC CDS COG1296 2728976 2729740 - [E] Predicted branched-chain amino acid permease (azaleucine azlB CDS COG1522 2729753 2730226 - [K] Transcriptional regulators 1521 yrdF CDS COG2732 2730560 2730835 - [K] Barstar, RNAse (barnase) inhibitor 1522 cypA CDS COG2124 2731107 2732339 - [Q] Cytochrome P450 yrdDc CDS NA 2732389 2732547 - NA yrdDm CDS NA 2732547 2732747 - NA yrdDn CDS ROG0286 2732747 2732881 - NA 1523 yrdC CDS COG1335 2732980 2733543 - [Q] Amidases related to nicotinamidase 1524 yrdB CDS ROG5228 2733772 2734143 - NA 1525 yrdA CDS COG2318 2734953 2735456 - [S] Uncharacterized protein conserved in bacteria 1526 aadK CDS ROG0740 2735682 2736536 - NA 1527 yrpB CDS COG2070 2736915 2737958 + [R] Dioxygenases related to 2-nitropropane dioxygenase 1528 murI CDS COG0796 2738308 2739105 + [M] Glutamate racemase 1529 yrpD CDS NA 2739486 2740193 + NA 1530 yrpDX CDS NA 2740769 2740846 + NA 1531 cds-SOX90582.1 CDS NA 2741133 2741294 - NA 1532 zinT CDS COG3443 2741357 2742112 - [R] Predicted periplasmic or secreted protein 1533 sigZ CDS COG1595 2742244 2742774 - [K] DNA-directed RNA polymerase specialized sigma subunit, 1534 yrpG CDS COG0667 2742909 2743889 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 1535 yraO CDS COG2851 2744163 2745479 - [C] H+/citrate symporter yraN CDS COG0583 2745594 2746463 - [K] Transcriptional regulator 1536 prpF CDS COG2828 2746608 2747711 + [S] Uncharacterized protein conserved in bacteria 1537 csn CDS ROG8489 2747984 2748817 - NA 1538 yraL CDS ROG1960 2749260 2749523 + NA 1539 yraK CDS COG0596 2749660 2750475 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1540 yraJ CDS COG4991 2750883 2751239 - [S] Uncharacterized protein with a bacterial SH3 yraI CDS COG4991 2751292 2751651 - [S] Uncharacterized protein with a bacterial SH3 1541 cds-SOX90583.1 CDS NA 2751923 2752024 - NA 1542 yraH CDS ROG1880 2752167 2752553 - NA 1543 yraG CDS COG5577 2752802 2753047 + [M] Spore coat protein yraF CDS COG5577 2753065 2753433 + [M] Spore coat protein adhB CDS COG1063 2753452 2754588 + [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases yraE CDS COG5577 2754607 2754804 + [M] Spore coat protein yraD CDS COG5577 2754820 2755119 + [M] Spore coat protein 1544 adhR CDS COG0789 2755382 2755804 - [K] Predicted transcriptional regulators 1545 yrzP CDS COG0599 2755987 2756181 + [S] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit adhA CDS COG1064 2756312 2757361 + [R] Zn-dependent alcohol dehydrogenases sufL CDS COG0693 2757492 2758001 + [R] Putative intracellular protease/amidase 1546 sacC CDS COG1621 2758043 2760076 - [G] Beta-fructosidases (levanase/invertase) cds-SOX90584.1 CDS NA 2759985 2760152 - NA 1547 levG CDS COG3716 2760233 2761060 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID levF CDS COG3715 2761081 2761890 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC levE CDS COG3444 2761907 2762395 - [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB levD CDS COG2893 2762395 2762835 - [G] Phosphotransferase system, mannose/fructose-specific component IIA levR CDS COG3933 2763025 2765832 - [K] Transcriptional antiterminator 1548 cds-SOX90585.1 CDS NA 2766379 2766519 + NA aapA CDS COG1113 2766558 2767946 + [E] Gamma-aminobutyrate permease and related permeases 1549 yrhP CDS COG1280 2768042 2768674 - [E] Putative threonine efflux protein 1550 yrhO CDS COG1378 2768827 2769654 + [K] Predicted transcriptional regulators 1551 sigV CDS COG1595 2769850 2770350 + [K] DNA-directed RNA polymerase specialized sigma subunit, rsiV CDS ROG7868 2770350 2771207 + NA 1552 oatA CDS COG1835 2771318 2773222 + [I] Predicted acyltransferases 1553 yrhK CDS ROG1422 2773356 2773646 + NA 1554 cypB CDS COG0369 2773890 2777054 - [P] Sulfite reductase, alpha subunit (flavoprotein) bscR CDS COG1309 2777070 2777654 - [K] Transcriptional regulator 1555 yrhH CDS COG0500 2777877 2778419 - [QR] SAM-dependent methyltransferases 1556 cds-SOX90586.1 CDS NA 2778608 2778766 - NA 1557 yrzI CDS NA 2778923 2779072 - NA 1558 yrhG CDS COG2116 2779462 2780262 - [P] Formate/nitrite family of transporters 1559 yrhF CDS COG5609 2780525 2780893 - [S] Uncharacterized conserved protein 1560 yrhE CDS COG3383 2781209 2784151 + [R] Uncharacterized anaerobic dehydrogenase yrhD CDS COG2427 2784170 2784652 + [S] Uncharacterized conserved protein 1561 yrhC CDS NA 2784688 2784918 - NA 1562 mccB CDS COG0626 2785001 2786140 - [E] Cystathionine beta-lyases/cystathionine gamma-synthases mccA CDS COG0031 2786142 2787065 - [E] Cysteine synthase mtnN CDS COG0775 2787130 2787825 - [F] Nucleoside phosphorylase yrrT CDS COG0500 2787846 2788487 - [QR] SAM-dependent methyltransferases 1563 yrzA CDS ROG6243 2788680 2788883 + NA 1564 yrrS CDS ROG3126 2788920 2789621 - NA 1565 pbpI CDS COG0768 2789686 2791440 - [M] Cell division protein FtsI/penicillin-binding protein 2 greA CDS COG0782 2791494 2791967 - [K] Transcription elongation factor udk CDS COG0572 2792218 2792853 - [F] Uridine kinase yrrO CDS COG0826 2792860 2794128 - [O] Collagenase and related proteases yrrN CDS COG0826 2794147 2795076 - [O] Collagenase and related proteases yrrM CDS COG4122 2795082 2795735 - [R] Predicted O-methyltransferase 1566 yrrL CDS COG1559 2795887 2796969 - [R] Predicted periplasmic solute-binding protein 1567 yrzB CDS COG3906 2797100 2797381 - [S] Uncharacterized protein conserved in bacteria rimF CDS COG0816 2797399 2797815 - [L] Predicted endonuclease involved in recombination (possible yrzL CDS COG4472 2797823 2798089 - [S] Uncharacterized protein conserved in bacteria alaS CDS COG0013 2798174 2800810 - [J] Alanyl-tRNA synthetase 1568 yrrI CDS COG0628 2801141 2802202 - [R] Predicted permease 1569 glnQ CDS COG1126 2802358 2803086 + [E] ABC-type polar amino acid transport system, glnH CDS COG0834 2803108 2803929 + [ET] ABC-type amino acid transport/signal transduction systems, glnM CDS COG0765 2803990 2804640 + [E] ABC-type amino acid transport system, permease glnP CDS COG0765 2804657 2805313 + [E] ABC-type amino acid transport system, permease 1570 yrzQ CDS NA 2805348 2805479 - NA yrzR CDS ROG0942 2805501 2805692 - NA yrrD CDS COG3881 2805704 2806228 - [S] Uncharacterized protein conserved in bacteria 1571 recDB CDS COG0507 2806286 2808682 - [L] ATP-dependent exoDNAse (exonuclease V), alpha subunit yrrB CDS COG0457 2808707 2809327 - [R] FOG: TPR repeat 1572 mnmA CDS COG0482 2809413 2810528 - [J] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop iscSA CDS COG1104 2810559 2811698 - [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related cymR CDS COG1959 2811717 2812133 - [K] Predicted transcriptional regulator 1573 rarA CDS COG2256 2812336 2813601 + [L] ATPase related to the helicase subunit 1574 tcdA CDS COG1179 2813643 2814407 - [H] Dinucleotide-utilizing enzymes involved in molybdopterin and 1575 aspS CDS COG0173 2814743 2816521 - [J] Aspartyl-tRNA synthetase hisS CDS COG0124 2816535 2817809 - [J] Histidyl-tRNA synthetase 1576 yrzK CDS NA 2818191 2818361 - NA 1577 yrvJ CDS COG3103 2818494 2820050 + [T] SH3 domain protein 1578 dtd CDS COG1490 2820077 2820475 - [J] D-Tyr-tRNAtyr deacylase rsh CDS COG0317 2820529 2822733 - [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases apt CDS COG0503 2822901 2823413 - [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins recJ CDS COG0608 2823419 2825779 - [L] Single-stranded DNA-specific exonuclease 1579 yrvD CDS COG5416 2825846 2826169 - [S] Uncharacterized integral membrane protein 1580 yrvC CDS COG0490 2826245 2826742 - [P] Putative regulatory, ligand-binding protein related to 1581 secDF CDS COG0342 2826900 2829113 - [U] Preprotein translocase subunit SecD comN CDS ROG2453 2829152 2829448 - NA 1582 spoVB CDS COG2244 2829564 2831120 + [R] Membrane protein involved in the export 1583 yrbG CDS COG2323 2831124 2831780 - [S] Predicted membrane protein 1584 yrzE CDS ROG3279 2831915 2832367 + NA 1585 yrbF CDS COG1862 2832424 2832690 - [U] Preprotein translocase subunit YajC tgt CDS COG0343 2832727 2833872 - [J] Queuine/archaeosine tRNA-ribosyltransferase queA CDS COG0809 2833899 2834927 - [J] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) yrzS CDS ROG0049 2834957 2835157 - NA ruvB CDS COG2255 2835150 2836154 - [L] Holliday junction resolvasome, helicase subunit ruvA CDS COG0632 2836165 2836770 - [L] Holliday junction resolvasome, DNA-binding subunit 1586 bofC CDS ROG5078 2836909 2837421 - NA csbX CDS NA 2837469 2838776 - NA 1587 yrbE CDS COG0673 2838847 2839872 - [R] Predicted dehydrogenases and related proteins 1588 yrzF CDS ROG1388 2840110 2840757 + NA 1589 cds-CCQ48603.1 CDS NA 2840803 2840925 - NA 1590 yrzH CDS NA 2841010 2841300 + NA yrzT CDS NA 2841307 2841447 + NA 1591 alaP CDS COG1115 2841611 2843065 + [E] Na+/alanine symporter 1592 yrbC CDS COG0217 2843106 2843828 - [S] Uncharacterized conserved protein 1593 sgpA CDS ROG0568 2843931 2844527 - NA 1594 safA CDS COG1388 2844675 2845838 - [M] FOG: LysM repeat 1595 nadA CDS COG0379 2845955 2847061 - [H] Quinolinate synthase nadC CDS COG0157 2847048 2847917 - [H] Nicotinate-nucleotide pyrophosphorylase nadB CDS COG0029 2847871 2849466 - [H] Aspartate oxidase 1596 nifS CDS COG1104 2849569 2850756 + [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related niaR CDS COG1827 2850716 2851258 + [R] Predicted small molecule binding protein (contains 1597 pheA CDS COG0077 2851283 2852140 - [E] Prephenate dehydratase thrR CDS COG4492 2852157 2852600 - [R] ACT domain-containing protein obgE CDS COG0536 2852661 2853947 - [R] Predicted GTPase spo0B CDS ROG3822 2853981 2854559 - NA 1598 cds-SOX90587.1 CDS NA 2854637 2854759 + NA 1599 rpmA CDS COG0211 2854880 2855164 - [J] Ribosomal protein L27 rppA CDS COG2868 2855177 2855515 - [J] Predicted ribosomal protein rplU CDS COG0261 2855518 2855826 - [J] Ribosomal protein L21 1600 spoIVFB CDS COG1994 2855973 2856839 - [R] Zn-dependent proteases spoIVFA CDS NA 2856832 2857626 - NA 1601 minD CDS COG2894 2857776 2858582 - [D] Septum formation inhibitor-activating ATPase minC CDS COG0850 2858584 2859264 - [D] Septum formation inhibitor mreD CDS COG2891 2859317 2859835 - [M] Cell shape-determining protein mreC CDS COG1792 2859832 2860704 - [M] Cell shape-determining protein mreB CDS COG1077 2860735 2861748 - [D] Actin-like ATPase involved in cell morphogenesis ysxA CDS COG2003 2861840 2862535 - [L] DNA repair proteins maf CDS COG0424 2862572 2863141 - [D] Nucleotide-binding protein implicated in inhibition of 1602 spoIIB CDS ROG2320 2863294 2864292 - NA 1603 comC CDS COG1989 2864426 2865172 - [NOU] Type II secretory pathway, prepilin signal folC CDS COG0285 2865312 2866604 - [H] Folylpolyglutamate synthase valS CDS COG0525 2866664 2869306 - [J] Valyl-tRNA synthetase 1604 yszA CDS ROG2723 2869754 2869945 + NA 1605 cotN CDS ROG3561 2869964 2870989 - NA spoVID CDS ROG3923 2871022 2872749 - NA 1606 hemL CDS COG0001 2872880 2874172 - [H] Glutamate-1-semialdehyde aminotransferase hemB CDS COG0113 2874202 2875176 - [H] Delta-aminolevulinic acid dehydratase hemD CDS COG1587 2875173 2875961 - [H] Uroporphyrinogen-III synthase hemC CDS COG0181 2875951 2876895 - [H] Porphobilinogen deaminase hemX CDS COG0755 2876928 2877758 - [O] ABC-type transport system involved in cytochrome hemA CDS COG0373 2877766 2879133 - [H] Glutamyl-tRNA reductase 1607 ysxD CDS NA 2879363 2879860 + NA 1608 engB CDS COG0218 2879882 2880469 - [R] Predicted GTPase lonA CDS COG0466 2880466 2882790 - [O] ATP-dependent Lon protease, bacterial type lonB CDS COG1067 2882971 2884629 - [O] Predicted ATP-dependent protease clpX CDS COG1219 2884781 2886043 - [O] ATP-dependent protease Clp, ATPase subunit tig CDS COG0544 2886315 2887589 - [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 1609 ysoA CDS ROG1882 2887817 2888821 - NA 1610 leuD CDS COG0066 2888940 2889539 - [E] 3-isopropylmalate dehydratase small subunit leuC CDS COG0065 2889552 2890970 - [E] 3-isopropylmalate dehydratase large subunit leuB CDS COG0473 2891020 2892117 - [CE] Isocitrate/isopropylmalate dehydrogenase leuA CDS COG0119 2892138 2893694 - [E] Isopropylmalate/homocitrate/citramalate synthases ilvC CDS COG0059 2893681 2894709 - [EH] Ketol-acid reductoisomerase ilvH CDS COG0440 2894733 2895251 - [E] Acetolactate synthase, small (regulatory) subunit ilvB CDS COG0028 2895248 2896972 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 1611 cotQ CDS NA 2897788 2898123 + NA 1612 ysnE CDS COG0454 2898292 2898747 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1613 ysnF CDS COG3861 2898931 2899752 + [S] Uncharacterized protein conserved in bacteria 1614 trnSL-Arg2 tRNA NA 2899816 2899889 - NA 1615 ysnB CDS COG0622 2900020 2900529 - [R] Predicted phosphoesterase rdgB CDS COG0127 2900545 2901141 - [F] Xanthosine triphosphate pyrophosphatase rph CDS COG0689 2901154 2901891 - [J] RNase PH 1616 gerM CDS COG5401 2902002 2903102 - [R] Spore germination protein 1617 rcmE CDS COG0796 2903217 2904035 - [M] Glutamate racemase ysmB CDS COG1846 2904043 2904483 - [K] Transcriptional regulators gerE CDS COG2197 2904727 2904951 - [TK] Response regulator containing a CheY-like receiver 1618 ysmA CDS COG0824 2905067 2905510 - [R] Predicted thioesterase sdhB CDS COG0479 2905571 2906332 - [C] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit sdhA CDS COG1053 2906335 2908095 - [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit sdhC CDS COG2009 2908129 2908737 - [C] Succinate dehydrogenase/fumarate reductase, cytochrome b subunit 1619 yslB CDS ROG0423 2909030 2909476 + NA 1620 lysCA CDS COG0527 2909520 2910746 - [E] Aspartokinases lysCB CDS COG0527 2909520 2910011 - [E] Aspartokinases 1621 uvrC CDS COG0322 2911116 2912888 - [L] Nuclease subunit of the excinuclease complex trxA CDS COG0526 2913024 2913338 - [OC] Thiol-disulfide isomerase and thioredoxins 1622 abfB CDS COG3534 2913661 2915148 - [G] Alpha-L-arabinofuranosidase 1623 etfA CDS COG2025 2915365 2916342 - [C] Electron transfer flavoprotein, alpha subunit etfB CDS COG2086 2916378 2917151 - [C] Electron transfer flavoprotein, beta subunit fadB CDS COG1024 2917166 2917942 - [I] Enoyl-CoA hydratase/carnithine racemase fadR CDS COG1309 2917957 2918541 - [K] Transcriptional regulator lcfA CDS COG0318 2918646 2920328 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1624 yshE CDS COG3766 2920517 2920921 - [S] Predicted membrane protein mutSB CDS COG1193 2920936 2923293 - [L] Mismatch repair ATPase (MutS family) polX CDS COG1796 2923314 2925026 - [L] DNA polymerase IV (family X) 1625 yshB CDS COG1286 2925100 2925633 - [R] Uncharacterized membrane protein, required for colicin zapA CDS COG3027 2925640 2925897 - [S] Uncharacterized protein conserved in bacteria 1626 rnhC CDS COG1039 2926031 2926972 + [L] Ribonuclease HIII 1627 pheT CDS COG0072 2927008 2929422 - [J] Phenylalanyl-tRNA synthetase beta subunit pheS CDS COG0016 2929438 2930472 - [J] Phenylalanyl-tRNA synthetase alpha subunit 1628 cds-SOX90590.1 CDS NA 2930554 2930760 + NA 1629 rlmBB CDS COG0566 2930827 2931573 - [J] rRNA methylases 1630 sspI CDS ROG2668 2931692 2931907 + NA 1631 ysfB CDS COG3835 2931976 2933082 + [KT] Sugar diacid utilization regulator 1632 glcD CDS COG0277 2933185 2934597 + [C] FAD/FMN-containing dehydrogenases glcF CDS COG0247 2934594 2935928 + [C] Fe-S oxidoreductase 1633 ysfE CDS COG0346 2935967 2936209 - [E] Lactoylglutathione lyase and related lyases cds-SOX90591.1 CDS NA 2936269 2936439 - NA cstA CDS COG1966 2936382 2938178 - [T] Carbon starvation protein, predicted membrane protein 1634 abfA CDS COG3534 2938330 2939832 - [G] Alpha-L-arabinofuranosidase araQ CDS COG0395 2939851 2940696 - [G] ABC-type sugar transport system, permease component araP CDS COG1175 2940697 2941638 - [G] ABC-type sugar transport systems, permease components araN CDS COG1653 2941674 2942975 - [G] ABC-type sugar transport system, periplasmic component egsA CDS COG0371 2943006 2944190 - [C] Glycerol dehydrogenase and related enzymes araL CDS COG0647 2944187 2945005 - [G] Predicted sugar phosphatases of the HAD araD CDS COG0235 2944983 2945672 - [G] Ribulose-5-phosphate 4-epimerase and related epimerases and araB CDS COG1069 2945689 2947371 - [C] Ribulose kinase araA CDS COG2160 2947385 2948875 - [G] L-arabinose isomerase abnA CDS COG3507 2949053 2950024 - [G] Beta-xylosidase 1635 frvX CDS COG1363 2950221 2951306 - [G] Cellulase M and related proteins 1636 ysdB CDS ROG7453 2951490 2951882 + NA 1637 ysdA CDS COG3326 2951898 2952167 - [S] Predicted membrane protein rplT CDS COG0292 2952224 2952583 - [J] Ribosomal protein L20 rpmI CDS COG0291 2952615 2952815 - [J] Ribosomal protein L35 infC CDS COG0290 2952828 2953349 - [J] Translation initiation factor 3 (IF-3) 1638 yscB CDS COG4851 2953795 2954460 + [R] Protein involved in sex pheromone biosynthesis 1639 pftB CDS COG1346 2954492 2955187 - [M] Putative effector of murein hydrolase pftA CDS COG1380 2955209 2955649 - [R] Putative effector of murein hydrolase LrgA lytT CDS COG3279 2955783 2956508 - [KT] Response regulator of the LytR/AlgR family lytS CDS COG3275 2956486 2958267 - [T] Putative regulator of cell autolysis 1640 ysaA CDS COG1011 2958434 2959216 + [R] Predicted hydrolase (HAD superfamily) 1641 thrS CDS COG0441 2959257 2961188 - [J] Threonyl-tRNA synthetase 1642 ytxC CDS ROG0090 2961586 2962431 - NA 1643 ytxB CDS COG0398 2962510 2963151 - [S] Uncharacterized conserved protein dnaI CDS COG1484 2963185 2964120 - [L] DNA replication protein dnaB CDS COG3611 2964148 2965566 - [L] Replication initiation/membrane attachment protein nrdR CDS COG1327 2965681 2966139 - [K] Predicted transcriptional regulator, consists of a 1644 speD CDS COG1586 2966413 2966793 - [E] S-adenosylmethionine decarboxylase 1645 gapB CDS COG0057 2967032 2968054 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 1646 ytcD CDS COG1733 2968260 2968640 - [K] Predicted transcriptional regulators 1647 ytbD CDS COG2814 2968824 2970014 + [G] Arabinose efflux permease ytbE CDS COG0656 2970038 2970880 + [R] Aldo/keto reductases, related to diketogulonate reductase 1648 coaE CDS COG0237 2970922 2971515 - [H] Dephospho-CoA kinase spcF CDS COG1971 2971531 2972163 - [S] Predicted membrane protein 1649 mutM CDS COG0266 2972329 2973159 - [L] Formamidopyrimidine-DNA glycosylase polA CDS COG0749 2973182 2975824 - [L] DNA polymerase I - 3'-5' exonuclease 1650 phoR CDS COG0642 2976068 2977807 - [T] Signal transduction histidine kinase phoP CDS COG0745 2977800 2978522 - [TK] Response regulators consisting of a CheY-like 1651 mdh CDS COG0039 2978734 2979672 - [C] Malate/lactate dehydrogenases icd CDS COG0538 2979716 2980987 - [C] Isocitrate dehydrogenases citZ CDS COG0372 2981151 2982269 - [C] Citrate synthase 1652 ytwI CDS COG2707 2982603 2983067 - [S] Predicted membrane protein 1653 ytvI CDS COG0628 2983164 2984279 + [R] Predicted permease 1654 ytzA CDS COG3030 2984312 2984695 - [R] Protein affecting phage T7 exclusion by pyk CDS COG0469 2984788 2986545 - [G] Pyruvate kinase pfkA CDS COG0205 2986588 2987547 - [G] 6-phosphofructokinase 1655 accA CDS COG0825 2987731 2988708 - [I] Acetyl-CoA carboxylase alpha subunit accD CDS COG0777 2988693 2989565 - [I] Acetyl-CoA carboxylase beta subunit 1656 maeB CDS COG0281 2989900 2991132 - [C] Malic enzyme dnaEC CDS COG0587 2991269 2994616 - [L] DNA polymerase III, alpha subunit 1657 ytrH CDS ROG0978 2994756 2995097 + NA ytrI CDS ROG3230 2995094 2995597 + NA 1658 ytzJ CDS NA 2995699 2995890 + NA 1659 nrnA CDS COG0618 2995908 2996849 - [R] Exopolyphosphatase-related proteins 1660 ytpI CDS ROG3531 2996980 2997282 + NA 1661 ytoI CDS COG4109 2997301 2998620 - [K] Predicted transcriptional regulator containing CBS domains 1662 ytnM CDS COG0730 2998796 2999698 - [R] Predicted permeases sndA CDS COG1473 2999717 3000967 - [R] Metal-dependent amidase/aminoacylase/carboxypeptidase ribR CDS COG0196 3000985 3001677 - [H] FAD synthase cmoJ CDS COG2141 3001724 3003052 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and cmoI CDS COG0695 3003049 3003330 - [O] Glutaredoxin and related proteins cmoO CDS COG2141 3003345 3004349 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and tcyN CDS COG1126 3004346 3005125 - [E] ABC-type polar amino acid transport system, tcyM CDS COG0765 3005122 3005829 - [E] ABC-type amino acid transport system, permease tcyL CDS COG0765 3005859 3006578 - [E] ABC-type amino acid transport system, permease tcyK CDS COG0834 3006600 3007412 - [ET] ABC-type amino acid transport/signal transduction systems, tcyJ CDS COG0834 3007426 3008235 - [ET] ABC-type amino acid transport/signal transduction systems, snaA CDS COG0454 3008249 3008785 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1663 ascR CDS COG0583 3008938 3009864 + [K] Transcriptional regulator 1664 ytkL CDS COG2220 3009915 3010598 - [R] Predicted Zn-dependent hydrolases of the beta-lactamase ytkK CDS COG1028 3010661 3011428 - [IQR] Dehydrogenases with different specificities (related to 1665 ytzD CDS ROG7699 3011555 3011791 - NA argH CDS COG0165 3011751 3013136 - [E] Argininosuccinate lyase argG CDS COG0137 3013133 3014344 - [E] Argininosuccinate synthase 1666 moaB CDS COG0521 3014514 3015026 - [H] Molybdopterin biosynthesis enzymes 1667 ackA CDS COG0282 3015111 3016298 - [C] Acetate kinase 1668 cds-SOX90592.1 CDS NA 3016471 3016674 - NA ytxK CDS COG0827 3016646 3017635 - [L] Adenine-specific DNA methylase 1669 tpx CDS COG2077 3017696 3018199 - [O] Peroxiredoxin 1670 gerW CDS COG3874 3018309 3018764 - [S] Uncharacterized conserved protein ytfI CDS ROG1000 3018778 3019458 - NA 1671 yteJ CDS COG1714 3019533 3020027 - [S] Predicted membrane protein/domain sppA CDS COG0616 3020040 3021047 - [OU] Periplasmic serine proteases (ClpP class) 1672 ppnKB CDS COG0061 3021233 3022036 + [G] Predicted sugar kinase 1673 ytcJ CDS COG1574 3022068 3023657 - [R] Predicted metal-dependent hydrolase with the TIM-barrel ytcI CDS COG0318 3023677 3025266 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 1674 sspA CDS ROG7143 3025445 3025654 - NA 1675 trmG CDS COG0301 3025748 3026953 - [H] Thiamine biosynthesis ATP pyrophosphatase iscSB CDS COG1104 3026957 3028102 - [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related 1676 braB CDS COG1114 3028297 3029634 + [E] Branched-chain amino acid permeases 1677 ezrA CDS COG4477 3029729 3031417 - [D] Negative regulator of septation ring formation 1678 hisK CDS COG1387 3031614 3032420 + [ER] Histidinol phosphatase and related hydrolases of 1679 refZ CDS COG1309 3032417 3033040 - [K] Transcriptional regulator 1680 msrC CDS COG1956 3033167 3033658 + [T] GAF domain-containing protein 1681 dgcP CDS COG3706 3033696 3035435 - [T] Response regulator containing a CheY-like receiver 1682 rpsD CDS COG0522 3035730 3036332 + [J] Ribosomal protein S4 and related proteins 1683 tyrS CDS COG0162 3036603 3037871 - [J] Tyrosyl-tRNA synthetase 1684 acsA CDS COG0365 3038213 3039931 - [I] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 1685 acuA CDS ROG0926 3040092 3040724 + NA acuB CDS COG0517 3040751 3041395 + [R] FOG: CBS domain acuC CDS COG0123 3041392 3042555 + [BQ] Deacetylases, including yeast histone deacetylase and 1686 motS CDS COG1360 3042566 3043294 - [N] Flagellar motor protein motP CDS COG1291 3043284 3044102 - [N] Flagellar motor component ccpA CDS COG1609 3044165 3045169 - [K] Transcriptional regulators 1687 aroX CDS COG2876 3045445 3046521 - [E] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 1688 brxJ CDS ROG0455 3046757 3047083 - NA ytxH CDS COG4980 3047107 3047562 - [R] Gas vesicle protein ytxG CDS COG4768 3047593 3048015 - [R] Uncharacterized protein containing a divergent version 1689 murC CDS COG0773 3048177 3049475 - [M] UDP-N-acetylmuramate-alanine ligase sftA CDS COG1674 3049725 3052583 - [D] DNA segregation ATPase FtsK/SpoIIIE and related 1690 ytpR CDS COG0073 3052743 3053348 - [R] EMAP domain ytpQ CDS COG4848 3053364 3054173 - [S] Uncharacterized protein conserved in bacteria ytpP CDS ROG0471 3054188 3054511 - NA cds-SOX90593.1 CDS NA 3054550 3054666 - NA 1691 ytoQ CDS ROG0851 3054746 3055192 + NA 1692 ytoP CDS COG1363 3055247 3056320 - [G] Cellulase M and related proteins 1693 ytzB CDS COG5584 3056479 3056796 + [S] Predicted small secreted protein 1694 maeC CDS COG0281 3056849 3058549 - [C] Malic enzyme 1695 ytnP CDS ROG1616 3058631 3059401 - NA 1696 trmB CDS COG0220 3059547 3060188 - [R] Predicted S-adenosylmethionine-dependent methyltransferase 1697 ytzH CDS ROG6488 3060395 3060673 + NA 1698 ytmP CDS COG0510 3060674 3061288 - [M] Predicted choline kinase involved in LPS 1699 amyX CDS COG1523 3061651 3063807 - [G] Type II secretory pathway, pullulanase PulA ytlR CDS COG1597 3063833 3064762 - [IR] Sphingosine kinase and enzymes related to ytlQ CDS ROG7695 3064811 3065725 - NA ytlP CDS COG1514 3065751 3066302 - [J] 2'-5' RNA ligase 1700 ytkP CDS COG0031 3066451 3067386 + [E] Cysteine synthase 1701 ytjP CDS COG0624 3067420 3068811 - [E] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 1702 pbuO CDS COG2252 3068908 3070206 + [R] Permeases 1703 ythQ CDS COG4473 3070246 3071403 - [U] Predicted ABC-type exoprotein transport system, permease ythP CDS COG4555 3071400 3072110 - [CP] ABC-type Na+ transport system, ATPase component 1704 ytzE CDS COG1349 3072401 3072622 + [KG] Transcriptional regulators of sugar metabolism 1705 rsuA CDS COG1187 3072743 3073462 - [J] 16S rRNA uridine-516 pseudouridylate synthase and 1706 murJ CDS COG2244 3073531 3075165 - [R] Membrane protein involved in the export 1707 ytfP CDS COG2081 3075367 3076629 + [R] Predicted flavoproteins 1708 opuD CDS COG1292 3076818 3078356 + [M] Choline-glycine betaine transporter 1709 yteV CDS NA 3078393 3078575 - NA 1710 rmgU CDS COG5578 3078643 3079311 - [S] Predicted integral membrane protein rmgT CDS COG0673 3079333 3080619 - [R] Predicted dehydrogenases and related proteins rmgS CDS ROG7000 3080631 3081134 - NA rmgQ CDS COG4225 3081131 3082252 - [R] Predicted unsaturated glucuronyl hydrolase involved in rmgP CDS COG4209 3082260 3083225 - [G] ABC-type polysaccharide transport system, permease component 1711 rmgR CDS COG4753 3083441 3085759 + [T] Response regulator containing CheY-like receiver domain 1712 ytcQ CDS COG1653 3085800 3087296 - [G] ABC-type sugar transport system, periplasmic component ytcP CDS COG0395 3087321 3088181 - [G] ABC-type sugar transport system, permease component 1713 ytbQ CDS COG1090 3088388 3089149 - [R] Predicted nucleoside-diphosphate sugar epimerase 1714 bioI CDS COG2124 3089226 3090413 - [Q] Cytochrome P450 bioB CDS COG0502 3090482 3091489 - [H] Biotin synthase and related enzymes bioD CDS COG0132 3091492 3092187 - [H] Dethiobiotin synthetase bioFC CDS COG0156 3092184 3093353 - [H] 7-keto-8-aminopelargonate synthetase and related enzymes bioK CDS COG0161 3093343 3094689 - [H] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase bioW CDS COG1424 3094679 3095455 - [H] Pimeloyl-CoA synthetase 1715 ytaP CDS COG1073 3095665 3096564 - [R] Hydrolases of the alpha/beta superfamily 1716 msmR CDS COG1609 3096782 3097816 + [K] Transcriptional regulators msmE CDS COG1653 3097850 3099130 + [G] ABC-type sugar transport system, periplasmic component msmF CDS COG1175 3099123 3100034 + [G] ABC-type sugar transport systems, permease components msmG CDS COG0395 3100031 3100861 + [G] ABC-type sugar transport system, permease component melA CDS COG1486 3100881 3102179 + [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases 1717 ytwF CDS COG0607 3102201 3102512 - [P] Rhodanese-related sulfurtransferase 1718 leuS CDS COG0495 3102629 3105043 - [J] Leucyl-tRNA synthetase 1719 ytvB CDS NA 3105470 3105805 - NA 1720 blrA CDS COG1366 3106210 3106995 + [T] Anti-anti-sigma regulatory factor (antagonist of anti-sigma 1721 yttB CDS ROG2472 3107232 3108425 - NA 1722 yttA CDS ROG2474 3108614 3109360 + NA 1723 bceB CDS ROG3052 3109397 3111337 - NA bceA CDS COG1136 3111327 3112088 - [V] ABC-type antimicrobial peptide transport system, ATPase 1724 bceS CDS COG2205 3112190 3113194 - [T] Osmosensitive K+ channel histidine kinase bceR CDS COG0745 3113187 3113882 - [TK] Response regulators consisting of a CheY-like ytrF CDS COG0577 3113979 3115289 - [V] ABC-type antimicrobial peptide transport system, permease ytrE CDS COG1136 3115279 3115974 - [V] ABC-type antimicrobial peptide transport system, ATPase ytrD CDS ROG3682 3115989 3116966 - NA ytrC CDS ROG3682 3116996 3117982 - NA ytrB CDS COG4555 3117976 3118854 - [CP] ABC-type Na+ transport system, ATPase component ytrA CDS COG1725 3118847 3119239 - [K] Predicted transcriptional regulators cds-CCQ48604.2 CDS NA 3119273 3119410 - NA 1725 ytzC CDS NA 3119565 3119837 - NA 1726 ytqA CDS COG1242 3119999 3120967 + [R] Predicted Fe-S oxidoreductase ytqB CDS COG4798 3120964 3121548 + [R] Predicted methyltransferase 1727 tbcS CDS ROG1361 3121538 3122641 - NA ytpA CDS COG2267 3122662 3123441 - [I] Lysophospholipase 1728 ytoA CDS COG0663 3123490 3124005 + [R] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 1729 ytnA CDS COG1113 3124250 3125641 - [E] Gamma-aminobutyrate permease and related permeases 1730 asnB CDS COG0367 3125777 3127675 - [E] Asparagine synthase (glutamine-hydrolyzing) metK CDS COG0192 3127825 3129027 - [H] S-adenosylmethionine synthetase 1731 pckA CDS COG1866 3129530 3131113 + [C] Phosphoenolpyruvate carboxykinase (ATP) 1732 ytmB CDS ROG5790 3131152 3131394 - NA ytmA CDS COG1073 3131446 3132219 - [R] Hydrolases of the alpha/beta superfamily 1733 ytlA CDS COG0715 3132370 3133374 + [P] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components ytlC CDS COG1116 3133387 3134169 + [P] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component ytlD CDS COG0600 3134144 3134956 + [P] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 1734 rppG CDS COG1051 3134983 3135459 - [F] ADP-ribose pyrophosphatase 1735 ytkC CDS COG4824 3135668 3136072 - [R] Phage-related holin (Lysis protein) 1736 dps CDS COG0783 3136238 3136675 - [P] DNA-binding ferritin-like protein (oxidative damage protectant) 1737 ytzI CDS NA 3136768 3136944 + NA 1738 ytkA CDS ROG3688 3136938 3137375 - NA 1739 luxS CDS COG1854 3137495 3137968 - [T] LuxS protein involved in autoinducer AI2 1740 ytjA CDS COG0759 3138097 3138324 + [S] Uncharacterized conserved protein 1741 ytiB CDS ROG1631 3138321 3138884 - NA 1742 rpmEB CDS COG0254 3138978 3139226 - [J] Ribosomal protein L31 1743 ythA CDS COG1271 3139431 3140762 + [C] Cytochrome bd-type quinol oxidase, subunit 1 ythB CDS COG1294 3140806 3141846 + [C] Cytochrome bd-type quinol oxidase, subunit 2 ytzL CDS ROG5115 3141900 3142058 + NA 1744 mntD CDS COG1108 3142077 3142964 - [P] ABC-type Mn2+/Zn2+ transport systems, permease components mntC CDS COG1108 3142954 3144261 - [P] ABC-type Mn2+/Zn2+ transport systems, permease components mntB CDS COG1121 3144267 3145019 - [P] ABC-type Mn/Zn transport systems, ATPase component mntA CDS COG0803 3145038 3145958 - [P] ABC-type metal ion transport system, periplasmic 1745 menC CDS COG4948 3146238 3147353 - [MR] L-alanine-DL-glutamate epimerase and related enzymes of menE CDS COG0318 3147350 3148810 - [IQ] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II menB CDS COG0447 3148901 3149716 - [H] Dihydroxynaphthoic acid synthase menH CDS COG0596 3149751 3150575 - [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase menD CDS COG1165 3150563 3152305 - [H] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase menF CDS COG1169 3152302 3153717 - [HQ] Isochorismate synthase 1746 yteA CDS COG1734 3154007 3154726 + [T] DnaK suppressor protein 1747 ytdA CDS COG1210 3154735 3155553 - [M] UDP-glucose pyrophosphorylase 1748 ytcA CDS COG1004 3155725 3157011 + [M] Predicted UDP-glucose 6-dehydrogenase ytcB CDS COG0451 3157008 3157958 + [MG] Nucleoside-diphosphate-sugar epimerases ytcC CDS COG0438 3157961 3159184 + [M] Glycosyltransferase 1749 cotOO CDS NA 3159258 3159689 - NA cotS CDS ROG0589 3159691 3160746 - NA cotSA CDS COG0438 3160761 3161894 - [M] Glycosyltransferase 1750 cotI CDS ROG0589 3162084 3163157 + NA 1751 ytaB CDS COG3476 3163237 3163704 + [T] Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor 1752 glgP CDS COG0058 3163735 3166131 - [G] Glucan phosphorylase glgA CDS COG0297 3166118 3167572 - [G] Glycogen synthase glgD CDS COG0448 3167569 3168600 - [G] ADP-glucose pyrophosphorylase glgC CDS COG0448 3168624 3169766 - [G] ADP-glucose pyrophosphorylase glgB CDS COG0296 3169763 3171646 - [G] 1,4-alpha-glucan branching enzyme 1753 trnB-Glu tRNA NA 3171879 3171950 - NA trnB-Ser2 tRNA NA 3171976 3172066 - NA trnB-Asn tRNA NA 3172070 3172144 - NA trnB-Ile2 tRNA NA 3172155 3172231 - NA trnB-Gly2 tRNA NA 3172247 3172320 - NA trnB-His tRNA NA 3172331 3172406 - NA trnB-Phe tRNA NA 3172424 3172499 - NA trnB-Asp tRNA NA 3172512 3172588 - NA trnB-Met2 tRNA NA 3172600 3172676 - NA trnB-Ser1 tRNA NA 3172694 3172786 - NA trnB-Met3 tRNA NA 3172793 3172869 - NA trnB-Met1 tRNA NA 3172872 3172948 - NA trnB-Ala tRNA NA 3172968 3173040 - NA trnB-Pro tRNA NA 3173046 3173122 - NA trnB-Arg tRNA NA 3173138 3173214 - NA trnB-Leu2 tRNA NA 3173224 3173309 - NA trnB-Gly1 tRNA NA 3173324 3173398 - NA trnB-Leu1 tRNA NA 3173404 3173490 - NA trnB-Lys tRNA NA 3173501 3173576 - NA trnB-Thr tRNA NA 3173614 3173689 - NA trnB-Val tRNA NA 3173722 3173797 - NA rrnB-5S rRNA NA 3173818 3173935 - NA rrnB-23S rRNA NA 3173991 3176918 - NA rrnB-16S rRNA NA 3177086 3178640 - NA 1754 thiT CDS COG3859 3179306 3179884 + [S] Predicted membrane protein 1755 yuaI CDS COG0454 3179926 3180447 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases floT CDS COG2268 3180465 3181994 - [S] Uncharacterized protein conserved in bacteria nfeDB CDS ROG2851 3182015 3182539 - NA 1756 yuaE CDS ROG1515 3182707 3183195 + NA 1757 yuaD CDS ROG5203 3183201 3183779 - NA 1758 gbsB CDS COG1454 3183867 3185075 - [C] Alcohol dehydrogenase, class IV gbsA CDS COG1012 3185092 3186564 - [C] NAD-dependent aldehyde dehydrogenases 1759 gbsR CDS COG1510 3186763 3187305 + [K] Predicted transcriptional regulators 1760 bslA CDS ROG2531 3187503 3188048 + NA 1761 ktrA CDS COG0569 3188414 3189082 + [P] K+ transport systems, NAD-binding component ktrB CDS COG0168 3189089 3190426 + [P] Trk-type K+ transport systems, membrane components 1762 yubF CDS COG4682 3190462 3190725 - [S] Predicted membrane protein 1763 lytG CDS COG1705 3190834 3191682 - [NU] Muramidase (flagellum-specific) 1764 yubD CDS ROG0777 3191843 3193378 - NA 1765 cdoA CDS ROG0977 3193863 3194348 + NA 1766 trnSL-Ala1 tRNA NA 3194455 3194527 - NA 1767 uppP CDS COG1968 3194635 3195465 - [V] Uncharacterized bacitracin resistance protein 1768 yubA CDS COG0628 3195558 3196724 - [R] Predicted permease 1769 iolU CDS COG0673 3196906 3197892 + [R] Predicted dehydrogenases and related proteins 1770 rhaA CDS COG4806 3197933 3199207 - [G] L-rhamnose isomerase rhaM CDS COG3254 3199233 3199547 - [S] Uncharacterized conserved protein rhaB CDS COG1070 3199565 3201022 - [G] Sugar (pentulose and hexulose) kinases rhaR CDS COG1349 3201027 3201803 - [KG] Transcriptional regulators of sugar metabolism rhaE CDS COG3347 3201860 3203929 - [S] Uncharacterized conserved protein 1771 tlpB CDS COG0840 3204067 3206055 - [NT] Methyl-accepting chemotaxis protein mcpA CDS COG0840 3206169 3208154 - [NT] Methyl-accepting chemotaxis protein tlpA CDS COG0840 3208280 3210268 - [NT] Methyl-accepting chemotaxis protein mcpB CDS COG0840 3210445 3212433 - [NT] Methyl-accepting chemotaxis protein 1772 tgl CDS ROG2103 3212591 3213328 + NA 1773 yuzH CDS NA 3213342 3213596 - NA 1774 yugU CDS COG0432 3213854 3214252 - [S] Uncharacterized conserved protein cds-SOX90594.1 CDS NA 3214212 3214346 - NA yugT CDS COG0366 3214372 3216036 - [G] Glycosidases yugS CDS COG1253 3216163 3217452 - [R] Hemolysins and related proteins containing CBS yugP CDS COG2738 3217496 3218173 - [R] Predicted Zn-dependent protease yuzI CDS NA 3218215 3218478 - NA 1775 mstX CDS NA 3218525 3218857 + NA kbfO CDS COG1226 3218854 3219840 + [P] Kef-type K+ transport systems, predicted NAD-binding 1776 yugN CDS ROG3259 3219837 3220241 - NA yugM CDS NA 3220301 3220672 - NA pgi CDS COG0166 3220731 3222083 - [G] Glucose-6-phosphate isomerase 1777 bdhK CDS COG1979 3222195 3223367 - [C] Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family bdhJ CDS COG1979 3223471 3224634 - [C] Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family 1778 yuzA CDS COG2155 3224864 3225100 + [S] Uncharacterized conserved protein 1779 yugI CDS COG1098 3225178 3225570 - [J] Predicted RNA binding protein (contains ribosomal 1780 yugH CDS COG0436 3225772 3226932 - [E] Aspartate/tyrosine/aromatic aminotransferase yugG CDS COG1522 3226933 3227433 - [K] Transcriptional regulators 1781 yugF CDS COG0596 3227581 3228402 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1782 yugE CDS NA 3228431 3228691 - NA 1783 patB CDS COG1168 3228778 3229941 + [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and 1784 kinB CDS COG5000 3230067 3231353 + [T] Signal transduction histidine kinase involved in kapB CDS ROG2433 3231399 3231785 + NA 1785 kapD CDS COG5018 3231812 3232429 - [R] Inhibitor of the KinA pathway to 1786 yuxJ CDS COG2814 3232640 3233818 + [G] Arabinose efflux permease 1787 pbpD CDS COG0744 3233911 3235785 + [M] Membrane carboxypeptidase (penicillin-binding protein) yuxK CDS COG3011 3235806 3236219 + [S] Uncharacterized protein conserved in bacteria 1788 yufK CDS NA 3236422 3236979 - NA 1789 maeL CDS COG3290 3237157 3238758 + [T] Signal transduction histidine kinase regulating citrate/malate maeM CDS COG4565 3238751 3239458 + [KT] Response regulator of citrate/malate metabolism 1790 nupN CDS COG1744 3239930 3241009 + [R] Uncharacterized ABC-type transport system, periplasmic component/surface nupO CDS COG3845 3241085 3242617 + [R] ABC-type uncharacterized transport systems, ATPase components nupP CDS COG4603 3242610 3243656 + [R] ABC-type uncharacterized transport system, permease component nupQ CDS COG1079 3243657 3244616 + [R] Uncharacterized ABC-type transport system, permease component 1791 maeN CDS COG3493 3244770 3246116 + [C] Na+/citrate symporter 1792 yufS CDS NA 3246152 3246367 - NA 1793 mrpA CDS COG1009 3246598 3249003 + [CP] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit mrpB CDS COG2111 3248996 3249427 + [P] Multisubunit Na+/H+ antiporter, MnhB subunit mrpC CDS COG1006 3249427 3249768 + [P] Multisubunit Na+/H+ antiporter, MnhC subunit mrpD CDS COG0651 3249761 3251242 + [CP] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, mrpE CDS COG1863 3251248 3251724 + [P] Multisubunit Na+/H+ antiporter, MnhE subunit mrpF CDS COG2212 3251724 3252008 + [P] Multisubunit Na+/H+ antiporter, MnhF subunit mrpG CDS COG1320 3251992 3252366 + [P] Multisubunit Na+/H+ antiporter, MnhG subunit 1794 yuxO CDS COG2050 3252405 3252785 - [Q] Uncharacterized protein, possibly involved in aromatic comA CDS COG2197 3252804 3253448 - [TK] Response regulator containing a CheY-like receiver comP CDS COG4585 3253529 3255838 - [T] Signal transduction histidine kinase comX CDS NA 3255853 3256020 - NA comQ CDS NA 3256008 3256907 - NA 1795 degQ CDS COG4942 3257092 3257232 - [D] Membrane-bound metallopeptidase 1796 cds-SOX90595.1 CDS NA 3257454 3257579 + NA 1797 cotIC CDS COG1847 3257693 3258061 + [R] Predicted RNA-binding protein 1798 pdeH CDS COG3434 3258037 3259266 - [T] Predicted signal transduction protein containing EAL 1799 pncB CDS COG1488 3259403 3260875 - [H] Nicotinic acid phosphoribosyltransferase pncA CDS COG1335 3260891 3261442 - [Q] Amidases related to nicotinamidase 1800 yueI CDS COG5506 3261539 3261937 - [S] Uncharacterized conserved protein 1801 yueH CDS NA 3262009 3262257 - NA 1802 yueG CDS NA 3262330 3262551 - NA yueF CDS COG0628 3262611 3263720 - [R] Predicted permease 1803 yuzE CDS COG5428 3263835 3264224 + [S] Uncharacterized conserved small protein 1804 yuzF CDS ROG7136 3264265 3264501 - NA 1805 yueE CDS COG1418 3264678 3265208 - [R] Predicted HD superfamily hydrolase 1806 bznD CDS COG3967 3265406 3266137 - [M] Short-chain dehydrogenase involved in D-alanine esterification 1807 yueC CDS NA 3266200 3266655 - NA yueB CDS COG1511 3266687 3269917 - [S] Predicted membrane protein yukAB CDS COG1674 3269914 3274401 - [D] DNA segregation ATPase FtsK/SpoIIIE and related yukC CDS COG4499 3274462 3275817 - [S] Predicted membrane protein yukD CDS COG5417 3275832 3276071 - [S] Uncharacterized small protein yukE CDS COG4842 3276141 3276434 - [S] Uncharacterized protein conserved in bacteria 1808 adeR CDS COG2508 3276955 3278223 + [TQ] Regulator of polyketide synthase expression 1809 ald CDS COG0686 3278325 3279461 + [E] Alanine dehydrogenase 1810 yukJ CDS COG5634 3279573 3280250 + [S] Uncharacterized conserved protein 1811 mbtH CDS COG3251 3280294 3280503 - [S] Uncharacterized protein conserved in bacteria dhbF CDS COG1020 3280519 3287655 - [Q] Non-ribosomal peptide synthetase modules and related dhbB CDS COG1535 3287675 3288613 - [Q] Isochorismate hydrolase dhbE CDS COG1021 3288641 3290260 - [Q] Peptide arylation enzymes dhbC CDS COG1169 3290289 3291485 - [HQ] Isochorismate synthase dhbA CDS COG1028 3291511 3292296 - [IQR] Dehydrogenases with different specificities (related to 1812 besA CDS COG2819 3292490 3293359 - [R] Predicted hydrolase of the alpha/beta superfamily 1813 yuiH CDS COG2041 3293573 3294169 - [R] Sulfite oxidase and related enzymes 1814 bioYB CDS COG1268 3294270 3294872 + [R] Uncharacterized conserved protein 1815 hisP CDS COG2056 3294942 3296270 - [R] Predicted permease 1816 pepA CDS COG0260 3296417 3297919 - [E] Leucyl aminopeptidase 1817 yuiD CDS COG1963 3298077 3298553 + [S] Uncharacterized protein conserved in bacteria 1818 spsC CDS COG3584 3889732 3890901 - [S] Uncharacterized protein conserved in bacteria 1819 yuiB CDS ROG3433 3299344 3299664 - NA yuiA CDS COG1107 3299718 3299861 - [L] Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn 1820 yumB CDS COG1252 3300034 3301254 - [C] NADH dehydrogenase, FAD-containing subunit 1821 trxBB CDS COG0492 3301586 3302584 + [O] Thioredoxin reductase 1822 yuzG CDS ROG5176 3302623 3302763 - NA 1823 guaC CDS COG0516 3303042 3304022 + [F] IMP dehydrogenase/GMP reductase 1824 paiB CDS COG2808 3304096 3304719 - [K] Transcriptional regulator paiA CDS COG0454 3304743 3305261 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1825 sufA CDS COG0316 3305599 3305961 - [S] Uncharacterized conserved protein 1826 dapF CDS COG0253 3306040 3306894 - [E] Diaminopimelate epimerase 1827 yutK CDS COG1972 3307017 3308231 - [F] Nucleoside permease 1828 yuzB CDS COG4844 3308368 3308604 - [S] Uncharacterized protein conserved in bacteria 1829 yutJ CDS COG1252 3308867 3309934 + [C] NADH dehydrogenase, FAD-containing subunit 1830 yuzD CDS COG4837 3309960 3310286 - [S] Uncharacterized protein conserved in bacteria 1831 yutI CDS COG0694 3310386 3310721 + [O] Thioredoxin-like proteins and domains 1832 yuxL CDS COG1506 3310763 3312736 - [E] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 1833 thrB CDS COG0083 3312844 3313773 - [E] Homoserine kinase thrC CDS COG0498 3313770 3314828 - [E] Threonine synthase hom CDS COG0460 3314828 3316129 - [E] Homoserine dehydrogenase 1834 cotNH CDS ROG5160 3316330 3317349 - NA 1835 yutG CDS COG1267 3317502 3318002 + [I] Phosphatidylglycerophosphatase A and related proteins 1836 nucF CDS COG0647 3318029 3318799 - [G] Predicted sugar phosphatases of the HAD yutE CDS COG2445 3318828 3319262 - [S] Uncharacterized conserved protein yutD CDS COG4470 3319286 3319561 - [S] Uncharacterized protein conserved in bacteria 1837 yutC CDS ROG3449 3319676 3320308 + NA 1838 lipA CDS COG0320 3320324 3321220 - [H] Lipoate synthase 1839 lytH CDS COG0739 3321455 3322435 + [M] Membrane proteins related to metalloendopeptidases 1840 fisB CDS ROG0134 3322463 3323227 - NA 1841 yunC CDS COG3377 3323300 3323605 - [S] Uncharacterized conserved protein 1842 yunD CDS COG0737 3323670 3325058 - [F] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases yunE CDS COG0730 3325078 3325899 - [R] Predicted permeases yunF CDS COG1801 3325917 3326765 - [S] Uncharacterized conserved protein yunG CDS ROG6165 3326803 3327150 - NA 1843 pucH CDS COG0044 3327247 3328587 - [F] Dihydroorotase and related cyclic amidohydrolases 1844 pucR CDS COG2508 3328762 3330357 + [TQ] Regulator of polyketide synthase expression pucJ CDS COG2233 3330502 3331851 + [F] Xanthine/uracil permeases pucK CDS COG2233 3331857 3333149 + [F] Xanthine/uracil permeases pucL CDS COG3648 3333162 3334646 + [Q] Uricase (urate oxidase) pucM CDS COG2351 3334646 3334990 + [R] Transthyretin-like protein 1845 yuzJ CDS NA 3335414 3335545 + NA 1846 pucE CDS COG2080 3335751 3336272 - [C] Aerobic-type carbon monoxide dehydrogenase, small subunit pucD CDS COG1529 3336263 3338500 - [C] Aerobic-type carbon monoxide dehydrogenase, large subunit pucC CDS COG1319 3338501 3339334 - [C] Aerobic-type carbon monoxide dehydrogenase, middle subunit pucB CDS COG2068 3339331 3339948 - [R] Uncharacterized MobA-related protein pucA CDS COG1975 3339945 3340937 - [O] Xanthine and CO dehydrogenases maturation factor, 1847 pucG CDS COG0075 3341166 3342416 - [E] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase pucF CDS COG2234 3342433 3343671 - [R] Predicted aminopeptidases 1848 cds-SOX90596.1 CDS NA 3343894 3344031 + NA 1849 bsnA CDS COG2356 3344113 3344979 + [L] Endonuclease I 1850 frlP CDS COG3839 3345013 3346116 - [G] ABC-type sugar transport systems, ATPase components 1851 frlR CDS COG2188 3346298 3347026 + [K] Transcriptional regulators 1852 frlD CDS COG0524 3347051 3347905 - [G] Sugar kinases, ribokinase family frlM CDS COG0395 3347919 3348821 - [G] ABC-type sugar transport system, permease component frlN CDS COG1175 3348825 3349703 - [G] ABC-type sugar transport systems, permease components frlO CDS COG1653 3349761 3351029 - [G] ABC-type sugar transport system, periplasmic component frlB CDS COG2222 3351110 3352096 - [M] Predicted phosphosugar isomerases 1853 yurQ CDS NA 3352312 3352686 - NA 1854 dadA CDS COG0665 3352789 3353907 - [E] Glycine/D-amino acid oxidases (deaminating) 1855 sspG CDS COG3110 3354066 3354212 + [S] Uncharacterized protein conserved in bacteria yurS CDS NA 3354212 3354487 + NA 1856 glxB CDS ROG5585 3354551 3354934 - NA 1857 yuzN CDS COG0640 3355045 3355323 - [K] Predicted transcriptional regulators 1858 sufB CDS COG0719 3355593 3356990 - [O] ABC-type transport system involved in Fe-S sufU CDS COG0822 3357011 3357454 - [C] NifU homolog involved in Fe-S cluster sufS CDS COG0520 3357444 3358664 - [E] Selenocysteine lyase sufD CDS COG0719 3358664 3359977 - [O] ABC-type transport system involved in Fe-S sufC CDS COG0396 3359995 3360780 - [O] ABC-type transport system involved in Fe-S 1859 yuzK CDS NA 3360974 3361111 - NA 1860 yurZ CDS COG0599 3361305 3361682 - [S] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 1861 metQ CDS COG1464 3361767 3362591 - [P] ABC-type metal ion transport system, periplasmic metP CDS COG2011 3362605 3363273 - [P] ABC-type metal ion transport system, permease metN CDS COG1135 3363266 3364291 - [P] ABC-type metal ion transport system, ATPase 1862 yusD CDS NA 3364618 3364962 - NA 1863 yusE CDS COG0526 3365069 3365389 - [OC] Thiol-disulfide isomerase and thioredoxins yusF CDS COG1658 3365391 3365831 - [L] Small primase-like proteins (Toprim domain) yusG CDS ROG7815 3365831 3366067 - NA gcvH CDS COG0509 3366123 3366506 - [E] Glycine cleavage system H protein (lipoate-binding) yusI CDS COG1393 3366573 3366929 - [P] Arsenate reductase and related proteins, glutaredoxin 1864 fadE CDS COG1960 3367040 3368824 - [I] Acyl-CoA dehydrogenases fadA CDS COG0183 3368839 3370014 - [I] Acetyl-CoA acetyltransferase fadN CDS COG1250 3370025 3372394 - [I] 3-hydroxyacyl-CoA dehydrogenase 1865 yuzL CDS NA 3372569 3372715 + NA 1866 putM CDS COG0506 3372740 3373648 - [E] Proline dehydrogenase 1867 yuzM CDS ROG6602 3373743 3373988 + NA yusN CDS ROG1591 3374001 3374333 + NA 1868 mdtR CDS COG1846 3374492 3374959 + [K] Transcriptional regulators mdtP CDS COG0477 3374956 3376581 + [GEPR] Permeases of the major facilitator superfamily 1869 yusQ CDS ROG0074 3376617 3377000 - NA yusR CDS COG1028 3377019 3377408 - [IQR] Dehydrogenases with different specificities (related to yusS CDS COG1028 3377430 3377759 - [IQR] Dehydrogenases with different specificities (related to 1870 yusT CDS COG0583 3377893 3378780 + [K] Transcriptional regulator 1871 yusU CDS ROG7279 3378800 3379087 - NA feuV CDS COG1120 3379112 3379939 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 1872 cotNW CDS NA 3380157 3380594 - NA 1873 yusYc CDS COG1164 3380704 3382212 - [E] Oligoendopeptidase F yusYn CDS COG1164 3382209 3382499 - [E] Oligoendopeptidase F 1874 yusZ CDS COG4221 3382633 3383475 + [R] Short-chain alcohol dehydrogenase of unknown specificity 1875 mrgA CDS COG0783 3383565 3384026 + [P] DNA-binding ferritin-like protein (oxidative damage protectant) 1876 htrB CDS COG0265 3384070 3385446 - [O] Trypsin-like serine proteases, typically periplasmic, contain 1877 cssR CDS COG0745 3385724 3386401 + [TK] Response regulators consisting of a CheY-like cssS CDS COG2972 3386398 3387753 + [T] Predicted signal transduction protein with a 1878 spxO CDS NA 3387781 3387945 - NA 1879 yuxN CDS COG1309 3388113 3388988 + [K] Transcriptional regulator 1880 fumC CDS COG0114 3389024 3390412 - [C] Fumarase 1881 yvzF CDS NA 3390479 3390664 - NA 1882 gerAA CDS ROG0098 3390782 3392230 + NA gerAB CDS ROG6746 3392199 3393296 + NA gerAC CDS ROG0172 3393293 3394414 + NA 1883 liaR CDS COG2197 3394422 3395057 - [TK] Response regulator containing a CheY-like receiver liaS CDS COG4585 3395035 3396117 - [T] Signal transduction histidine kinase liaF CDS COG4758 3396114 3396839 - [S] Predicted membrane protein liaG CDS COG3595 3396873 3397745 - [S] Uncharacterized conserved protein liaH CDS COG1842 3397846 3398523 - [KT] Phage shock protein A (IM30), suppresses liaI CDS ROG4279 3398550 3398930 - NA 1884 yvqJ CDS NA 3399092 3400360 - NA 1885 yvqK CDS COG2096 3400537 3401118 - [S] Uncharacterized conserved protein yvrA CDS COG1120 3401141 3402469 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components yvrB CDS COG0609 3402469 3403530 - [P] ABC-type Fe3+-siderophore transport system, permease component yvrC CDS COG0614 3403493 3404437 - [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component 1886 yvrD CDS COG1028 3404835 3405626 + [IQR] Dehydrogenases with different specificities (related to 1887 yvrE CDS COG3386 3405664 3406542 - [G] Gluconolactonase 1888 yvrG CDS COG2205 3406614 3408356 - [T] Osmosensitive K+ channel histidine kinase yvrH CDS COG0745 3408353 3409066 - [TK] Response regulators consisting of a CheY-like 1889 rsoA CDS NA 3409219 3409458 - NA sigO CDS ROG6734 3409462 3409992 - NA 1890 yvrJ CDS ROG1720 3410007 3410345 + NA 1891 oxdC CDS COG2140 3410466 3411623 + [GR] Thermophilic glucose-6-phosphate isomerase and related metalloenzymes rsiO CDS NA 3411684 3412094 + NA 1892 yvrN CDS COG0577 3412128 3413357 - [V] ABC-type antimicrobial peptide transport system, permease yvrO CDS COG1136 3413350 3414039 - [V] ABC-type antimicrobial peptide transport system, ATPase yvrP CDS COG0845 3414023 3415216 - [M] Membrane-fusion protein 1893 fhuC CDS COG1120 3415387 3416196 - [PH] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components fhuG CDS COG0609 3416212 3417222 - [P] ABC-type Fe3+-siderophore transport system, permease component fhuB CDS COG0609 3417222 3418376 - [P] ABC-type Fe3+-siderophore transport system, permease component 1894 fhuD CDS COG0614 3418474 3419421 + [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component 1895 lysP CDS COG0531 3419656 3421065 - [E] Amino acid transporters 1896 sspJ CDS NA 3421465 3421605 - NA 1897 yvsG CDS COG1988 3421772 3422254 + [R] Predicted membrane-bound metal-dependent hydrolases 1898 ltaSP CDS COG1368 3422354 3424207 + [M] Phosphoglycerol transferase and related proteins, alkaline 1899 yvgK CDS COG1910 3424235 3425161 - [P] Periplasmic molybdate-binding protein/domain 1900 modA CDS COG0725 3425272 3426054 + [P] ABC-type molybdate transport system, periplasmic component modB CDS COG4149 3426026 3426718 + [P] ABC-type molybdate transport system, permease component 1901 pgoN CDS COG0656 3426749 3427579 - [R] Aldo/keto reductases, related to diketogulonate reductase 1902 yvgO CDS NA 3427802 3428287 + NA 1903 nhaK CDS COG0025 3428331 3430343 - [P] NhaP-type Na+/H+ and K+/H+ antiporters 1904 cysI CDS COG0155 3430598 3432313 - [P] Sulfite reductase, beta subunit (hemoprotein) cysJ CDS COG0369 3432339 3434156 - [P] Sulfite reductase, alpha subunit (flavoprotein) 1905 helD CDS COG3973 3434327 3436651 - [R] Superfamily I DNA and RNA helicases 1906 yvgT CDS COG2860 3436849 3437457 - [S] Predicted membrane protein 1907 bdbC CDS COG1495 3437644 3438060 - [O] Disulfide bond formation protein DsbB bdbD CDS COG1651 3438065 3438733 - [O] Protein-disulfide isomerase 1908 cadA CDS COG2217 3438853 3440961 - [P] Cation transport ATPase copA CDS COG2217 3441121 3443529 - [P] Cation transport ATPase copZ CDS COG2608 3443613 3443822 - [P] Copper chaperone csoR CDS COG1937 3443896 3444201 - [S] Uncharacterized protein conserved in bacteria 1909 iolW CDS COG0673 3444329 3445405 + [R] Predicted dehydrogenases and related proteins 1910 azoRB CDS COG1182 3445442 3446077 - [I] Acyl carrier protein phosphodiesterase 1911 yvaC CDS COG1289 3446237 3448132 - [S] Predicted membrane protein 1912 yvaD CDS NA 3448295 3448696 - NA yvaE CDS COG2076 3448693 3449052 - [P] Membrane transporters of cations and cationic yvaF CDS COG1309 3449049 3449621 - [K] Transcriptional regulator yvaG CDS COG1028 3449732 3450526 - [IQR] Dehydrogenases with different specificities (related to 1913 smpB CDS COG0691 3451248 3451718 - [O] tmRNA-binding protein rnr CDS COG0557 3451863 3454202 - [K] Exoribonuclease R estA_2 COG1647 [R] Esterase/lipase 1914 secG CDS COG1314 3455093 3455323 - [U] Preprotein translocase subunit SecG 1915 yvaM CDS COG0596 3455472 3456242 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase 1916 yvzC CDS COG3093 3456282 3456515 - [R] Plasmid maintenance system antidote protein 1917 rghRA CDS COG1396 3456667 3457074 + [K] Predicted transcriptional regulators rghRB CDS COG1396 3457104 3457523 + [K] Predicted transcriptional regulators 1918 catR CDS COG1733 3457615 3457941 + [K] Predicted transcriptional regulators 1919 yvaQ CDS COG0840 3458066 3459766 + [NT] Methyl-accepting chemotaxis protein 1920 opuBD CDS COG1174 3459806 3460486 - [E] ABC-type proline/glycine betaine transport systems, permease opuBC CDS COG1732 3460503 3461423 - [M] Periplasmic glycine betaine/choline-binding (lipo)protein of an opuBB CDS COG1174 3461435 3462088 - [E] ABC-type proline/glycine betaine transport systems, permease opuBA CDS COG1125 3462105 3463250 - [E] ABC-type proline/glycine betaine transport systems, ATPase 1921 yvaV CDS COG1510 3463534 3464067 + [K] Predicted transcriptional regulators 1922 sdpA CDS NA 3464289 3464765 + NA sdpB CDS ROG4932 3464762 3465733 + NA spbC CDS ROG1239 3465776 3466387 + NA 1923 sdpI CDS COG5658 3466434 3467057 - [S] Predicted integral membrane protein sdpR CDS COG0640 3467054 3467326 - [K] Predicted transcriptional regulators 1924 opuCD CDS COG1174 3467546 3468235 - [E] ABC-type proline/glycine betaine transport systems, permease opuCC CDS COG1732 3468253 3469164 - [M] Periplasmic glycine betaine/choline-binding (lipo)protein of an opuCB CDS COG1174 3469184 3469837 - [E] ABC-type proline/glycine betaine transport systems, permease opuCA CDS COG1125 3469860 3471002 - [E] ABC-type proline/glycine betaine transport systems, ATPase 1925 opcR CDS COG1510 3471266 3471823 + [K] Predicted transcriptional regulators 1926 yvbG CDS COG2095 3471841 3472476 - [U] Multiple antibiotic transporter 1927 yvbH CDS ROG0061 3472626 3473240 + NA 1928 yvbI CDS COG4640 3473372 3474070 + [S] Predicted membrane protein 1929 yvbJ CDS COG4640 3474106 3475923 - [S] Predicted membrane protein 1930 yvbK CDS COG0454 3476043 3476510 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 1931 eno CDS COG0148 3476555 3477847 - [G] Enolase pgm CDS COG0696 3477877 3479412 - [G] Phosphoglyceromutase tpiA CDS COG0149 3479405 3480166 - [G] Triosephosphate isomerase pgk CDS COG0126 3480197 3481381 - [G] 3-phosphoglycerate kinase gapA CDS COG0057 3481698 3482705 - [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase cggR CDS COG2390 3482752 3483774 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 1932 araE CDS COG0477 3484072 3485466 - [GEPR] Permeases of the major facilitator superfamily 1933 araR CDS COG1609 3485670 3486758 + [K] Transcriptional regulators 1934 yvbT CDS COG2141 3486807 3487817 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 1935 yvbU CDS COG0583 3487974 3488852 - [K] Transcriptional regulator 1936 cyeB CDS COG0697 3488952 3489869 + [GER] Permeases of the drug/metabolite transporter (DMT) 1937 yvbW CDS COG1113 3489910 3491253 - [E] Gamma-aminobutyrate permease and related permeases 1938 yvbX CDS COG3858 3491655 3492689 - [R] Predicted glycosyl hydrolase 1939 lutC CDS COG1556 3492797 3493519 - [S] Uncharacterized conserved protein lutB CDS COG1139 3493519 3494958 - [C] Uncharacterized conserved protein containing a ferredoxin-like lutA CDS COG0247 3494985 3495701 - [C] Fe-S oxidoreductase 1940 yvfU CDS COG2197 3495876 3496478 - [TK] Response regulator containing a CheY-like receiver yvfT CDS COG4585 3496495 3497610 - [T] Signal transduction histidine kinase yvfS CDS ROG7578 3497614 3498351 - NA yvfR CDS COG1131 3498352 3499257 - [V] ABC-type multidrug transport system, ATPase component 1941 rsbQ CDS COG0596 3499541 3500350 + [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase rsbP CDS COG2208 3500386 3501597 + [TK] Serine phosphatase RsbU, regulator of sigma 1942 ganB CDS COG3867 3501651 3502940 - [G] Arabinogalactan endo-1,4-beta-galactosidase ganA CDS COG1874 3503020 3505083 - [G] Beta-galactosidase ganQ CDS COG3833 3505102 3505953 - [G] ABC-type maltose transport systems, permease component ganP CDS COG1175 3505957 3507213 - [G] ABC-type sugar transport systems, permease components ganS CDS COG2182 3507253 3508518 - [G] Maltose-binding periplasmic proteins/domains ganR CDS COG1609 3508659 3509651 - [K] Transcriptional regulators lutR CDS COG2186 3509831 3510490 - [K] Transcriptional regulators 1943 lutP CDS COG1620 3510780 3512471 + [C] L-lactate permease 1944 sigL CDS COG1508 3512498 3513808 - [K] DNA-directed RNA polymerase specialized sigma subunit, 1945 yvfG CDS NA 3513887 3514105 + NA 1946 epsO CDS COG5039 3514115 3515083 - [GM] Exopolysaccharide biosynthesis protein epsN CDS COG0399 3515062 3516228 - [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved epsM CDS COG1044 3516233 3516883 - [M] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase epsL CDS COG2148 3516880 3517488 - [M] Sugar transferases involved in lipopolysaccharide synthesis epsK_2 COG2244 [R] Membrane protein involved in the export epsJ_2 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis epsI CDS COG5039 3520030 3521106 - [GM] Exopolysaccharide biosynthesis protein epsH CDS COG0463 3521111 3522145 - [M] Glycosyltransferases involved in cell wall biogenesis epsG CDS ROG5387 3522170 3523273 - NA epsF CDS COG0438 3523270 3524424 - [M] Glycosyltransferase epsE CDS COG0463 3524417 3525253 - [M] Glycosyltransferases involved in cell wall biogenesis epsD CDS COG0438 3525250 3526395 - [M] Glycosyltransferase epsC CDS COG1086 3526407 3528203 - [MG] Predicted nucleoside-diphosphate sugar epimerases 1947 epsB CDS COG0455 3528462 3529145 - [D] ATPases involved in chromosome partitioning epsA CDS COG3944 3529151 3529855 - [M] Capsular polysaccharide biosynthesis protein 1948 slrR CDS COG1396 3530101 3530559 + [K] Predicted transcriptional regulators 1949 pnbA CDS COG2272 3530635 3532104 + [I] Carboxylesterase type B cds-SOX90597.1 CDS COG3238 3532107 3532298 + [S] Uncharacterized protein conserved in bacteria 1950 padC CDS COG3479 3532325 3532810 - [Q] Phenolic acid decarboxylase yveG CDS ROG0922 3532833 3533144 - NA yveF CDS ROG0922 3533196 3533288 - NA 1951 racX CDS COG1794 3533419 3534102 - [M] Aspartate racemase pbpE CDS COG1680 3534118 3535473 - [V] Beta-lactamase class C and other penicillin 1952 sacB CDS ROG2227 3536012 3537433 + NA 1953 levB CDS COG1621 3537507 3539057 + [G] Beta-fructosidases (levanase/invertase) aspP CDS COG0531 3539165 3540727 + [E] Amino acid transporters yvdT CDS COG1309 3540717 3541406 + [K] Transcriptional regulator psmA CDS COG2076 3541488 3541823 + [P] Membrane transporters of cations and cationic psmB CDS COG2076 3541823 3542143 + [P] Membrane transporters of cations and cationic 1954 yvdQ CDS ROG3753 3542179 3542691 - NA 1955 cotNP CDS COG0277 3542943 3544286 - [C] FAD/FMN-containing dehydrogenases 1956 cotR CDS COG3621 3544642 3545604 + [R] Patatin 1957 trnQ-Arg tRNA NA 3545889 3545964 - NA 1958 clpP CDS COG0740 3546234 3546827 + [OU] Protease subunit of ATP-dependent Clp proteases 1959 mdxM CDS COG0637 3546873 3547553 - [R] Predicted phosphatase/phosphohexomutase mdxL CDS COG0366 3547550 3549235 - [G] Glycosidases mdxK CDS COG1554 3549228 3551501 - [G] Trehalose and maltose hydrolases (possible phosphorylases) mdxJ CDS COG5521 3551479 3552363 - [S] Predicted integral membrane protein mdxG CDS COG3833 3552369 3553205 - [G] ABC-type maltose transport systems, permease component mdxF CDS COG1175 3553206 3554513 - [G] ABC-type sugar transport systems, permease components mdxE CDS COG2182 3554553 3555806 - [G] Maltose-binding periplasmic proteins/domains mdxD CDS COG0366 3555902 3557671 - [G] Glycosidases mdxR CDS COG1609 3557784 3558734 - [K] Transcriptional regulators 1960 yvdD CDS COG1611 3558940 3559515 - [R] Predicted Rossmann fold nucleotide-binding protein 1961 yvdC CDS ROG1959 3559632 3559952 + NA 1962 yvdB CDS COG0659 3559979 3561571 - [P] Sulfate permease and related transporters (MFS yvdA CDS ROG1631 3561590 3562183 - NA 1963 yvcT CDS COG1052 3562566 3563543 + [CHR] Lactate dehydrogenase and related dehydrogenases 1964 psdB CDS NA 3563581 3565521 - NA psdA CDS COG1136 3565496 3566275 - [V] ABC-type antimicrobial peptide transport system, ATPase 1965 psdS CDS COG5002 3566358 3567428 - [T] Signal transduction histidine kinase psdR CDS COG0745 3567422 3568135 - [TK] Response regulators consisting of a CheY-like 1966 yvzJ CDS NA 3568282 3568491 + NA 1967 yvcN CDS COG2162 3568527 3569291 - [Q] Arylamine N-acetyltransferase crh CDS COG1925 3569292 3569549 - [G] Phosphotransferase system, HPr-related proteins whiA CDS COG1481 3569573 3570523 - [S] Uncharacterized protein conserved in bacteria mgfK CDS COG0391 3570546 3571499 - [S] Uncharacterized conserved protein yvcJ CDS COG1660 3571501 3572388 - [R] Predicted P-loop-containing kinase yvcI CDS COG1051 3572413 3572889 - [F] ADP-ribose pyrophosphatase 1968 trxB CDS COG0492 3573207 3574157 - [O] Thioredoxin reductase 1969 cwlO CDS COG3883 3574363 3575784 - [S] Uncharacterized protein conserved in bacteria 1970 yvcD CDS COG0457 3576165 3577619 - [R] FOG: TPR repeat bmrA CDS COG1132 3577745 3579514 - [V] ABC-type multidrug transport system, ATPase and 1971 yvzA CDS NA 3579679 3580038 - NA yvcB CDS NA 3580053 3581963 - NA yvcA CDS ROG0568 3581965 3582690 - NA 1972 hisIE CDS COG0139 3582936 3583565 - [E] Phosphoribosyl-AMP cyclohydrolase hisF CDS COG0107 3583562 3584320 - [E] Imidazoleglycerol-phosphate synthase hisA CDS COG0106 3584317 3585054 - [E] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase hisH CDS COG0118 3585051 3585689 - [E] Glutamine amidotransferase hisB CDS COG0131 3585690 3586274 - [E] Imidazoleglycerol-phosphate dehydratase hisD CDS COG0141 3586271 3587554 - [E] Histidinol dehydrogenase hisG CDS COG0040 3587551 3588192 - [E] ATP phosphoribosyltransferase hisZ CDS COG3705 3588185 3589360 - [E] ATP phosphoribosyltransferase involved in histidine biosynthesis 1973 yvpB CDS COG4990 3589611 3590363 + [S] Uncharacterized protein conserved in bacteria 1974 pelC CDS ROG1832 3590603 3591268 + NA 1975 hprF CDS COG0110 3591288 3591806 - [R] Acetyltransferase (isoleucine patch superfamily) ppaX CDS COG0546 3591810 3592460 - [R] Predicted phosphatases yvoD CDS ROG0215 3592457 3593395 - NA lgt CDS COG0682 3593419 3594228 - [M] Prolipoprotein diacylglyceryltransferase hprK CDS COG1493 3594242 3595174 - [T] Serine kinase of the HPr protein, 1976 nagA CDS COG1820 3595356 3596546 + [G] N-acetylglucosamine-6-phosphate deacetylase nagBA CDS COG0363 3596543 3597271 + [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase nagR CDS COG2188 3597289 3598020 + [K] Transcriptional regulators 1977 yvnB CDS COG1409 3598040 3601909 - [R] Predicted phosphohydrolases 1978 yvnA CDS ROG1378 3602074 3602547 + NA 1979 cypX CDS COG2124 3602588 3603805 - [Q] Cytochrome P450 pchC CDS NA 3603821 3604567 - NA 1980 pchR CDS COG3432 3604993 3605502 + [K] Predicted transcriptional regulator pchE CDS NA 3605523 3606734 + NA 1981 yvlD CDS COG1950 3606762 3607121 - [S] Predicted membrane protein yvlC CDS COG1983 3607123 3607320 - [KT] Putative stress-responsive transcriptional regulator yvlB CDS COG3595 3607325 3608422 - [S] Uncharacterized conserved protein yvlA CDS ROG2199 3608447 3608773 - NA 1982 yvkN CDS NA 3608991 3609221 + NA 1983 yvzB CDS COG1344 3609420 3609902 - [N] Flagellin and related hook-associated proteins uvrA CDS COG0178 3610064 3612937 - [L] Excinuclease ATPase subunit uvrB CDS COG0556 3612945 3614930 - [L] Helicase subunit of the DNA excision 1984 csbA CDS COG4897 3615116 3615346 - [S] Uncharacterized protein conserved in bacteria 1985 yvkC CDS COG0574 3615793 3618288 + [G] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase yvkB CDS COG1309 3618364 3618933 + [K] Transcriptional regulator yvkA CDS COG0477 3618964 3620298 + [GEPR] Permeases of the major facilitator superfamily 1986 minJ CDS COG0265 3620346 3621539 - [O] Trypsin-like serine proteases, typically periplasmic, contain 1987 swrAAc CDS NA 3621618 3621956 - NA swrAAn CDS NA 3621931 3622047 - NA 1988 ctpB CDS COG0793 3622356 3623798 - [M] Periplasmic protease ftsX CDS COG2177 3623938 3624828 - [D] Cell division protein ftsE CDS COG2884 3624821 3625507 - [D] Predicted ATPase involved in cell division 1989 cccB CDS ROG3636 3625741 3626079 - NA yvjA CDS COG1284 3626128 3627012 - [S] Uncharacterized conserved protein 1990 prfB CDS COG1186 3627139 3628167 - [J] Protein chain release factor B 1991 CDS_3 CDS NA 3628169 3628240 + NA 1992 secA CDS COG0653 3628310 3630835 - [U] Preprotein translocase subunit SecA (ATPase, RNA hpf CDS COG1544 3631003 3631572 - [J] Ribosome-associated protein Y (PSrp-1) 1993 yvzG CDS ROG4917 3631763 3632140 - NA fliT CDS ROG0925 3632150 3632491 - NA fliS CDS COG1516 3632488 3632889 - [NUO] Flagellin-specific chaperone FliS fliD CDS COG1345 3632911 3634407 - [N] Flagellar capping protein yvyC CDS COG1334 3634425 3634754 - [N] Uncharacterized flagellar protein FlaG hag CDS COG1344 3634987 3635901 - [N] Flagellin and related hook-associated proteins csrA CDS COG1551 3636046 3636270 - [T] Carbon storage regulator (could also regulate fliW CDS COG1699 3636264 3636695 - [S] Uncharacterized protein conserved in bacteria yviE CDS ROG1587 3636716 3637291 - NA flgL CDS COG1344 3637338 3638234 - [N] Flagellin and related hook-associated proteins flgK CDS COG1256 3638245 3639768 - [N] Flagellar hook-associated protein flgN CDS ROG1512 3639787 3640269 - NA flgM CDS COG2747 3640285 3640551 - [KNU] Negative regulator of flagellin synthesis (anti-sigma28 1994 yvyF CDS ROG1542 3640632 3641051 - NA 1995 comFC CDS COG1040 3641125 3641847 - [R] Predicted amidophosphoribosyltransferases comFB CDS ROG0632 3641811 3642107 - NA comFA CDS COG4098 3642167 3643558 - [L] Superfamily II DNA/RNA helicase required for 1996 fakBA CDS COG1307 3643664 3644509 - [S] Uncharacterized protein conserved in bacteria 1997 degU CDS COG2197 3644607 3645296 - [TK] Response regulator containing a CheY-like receiver degS CDS COG4585 3645379 3646536 - [T] Signal transduction histidine kinase 1998 yvyE CDS COG1739 3646753 3647406 + [S] Uncharacterized conserved protein tagV CDS COG1316 3647406 3648581 + [K] Transcriptional regulator 1999 tagO CDS COG0472 3648654 3649730 - [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase tuaH CDS COG0438 3649875 3651068 - [M] Glycosyltransferase tuaG CDS COG0463 3651097 3651855 - [M] Glycosyltransferases involved in cell wall biogenesis tuaF CDS COG3206 3651879 3652559 - [M] Uncharacterized protein involved in exopolysaccharide biosynthesis tuaE CDS COG3307 3652588 3654054 - [M] Lipid A core - O-antigen ligase tuaD CDS COG1004 3654139 3655524 - [M] Predicted UDP-glucose 6-dehydrogenase tuaC CDS COG0438 3655586 3656755 - [M] Glycosyltransferase tuaB CDS COG2244 3656752 3658203 - [R] Membrane protein involved in the export tuaAc CDS COG2148 3658259 3658408 - [M] Sugar transferases involved in lipopolysaccharide synthesis tuaAn CDS COG2148 3658407 3658892 - [M] Sugar transferases involved in lipopolysaccharide synthesis 2000 lytC CDS COG2247 3659119 3660609 - [M] Putative cell wall-binding domain lytB CDS COG2247 3660648 3662765 - [M] Putative cell wall-binding domain lytA CDS ROG2162 3662789 3663097 - NA 2001 tagU CDS COG1316 3663281 3664201 + [K] Transcriptional regulator 2002 mnaA CDS COG0381 3664241 3665383 - [M] UDP-N-acetylglucosamine 2-epimerase 2003 gtaB CDS COG1210 3665629 3666507 + [M] UDP-glucose pyrophosphorylase 2004 cds-SOX90598.1 CDS NA 3666841 3667059 + NA 2005 yvzH CDS NA 3666933 3667016 - NA 2006 ggaB CDS COG1887 3667209 3669911 - [M] Putative glycosyl/glycerophosphate transferases involved in teichoic ggaA CDS COG0463 3670035 3671375 - [M] Glycosyltransferases involved in cell wall biogenesis yvzI CDS COG1887 3671416 3671622 - [M] Putative glycosyl/glycerophosphate transferases involved in teichoic 2007 yvzE CDS COG1210 3672929 3673525 + [M] UDP-glucose pyrophosphorylase 2008 tagH CDS COG1134 3673564 3675147 - [GM] ABC-type polysaccharide/polyol phosphate transport system, ATPase tagG CDS COG1682 3675167 3675994 - [GM] ABC-type polysaccharide/polyol phosphate export systems, permease tagF CDS COG1887 3676159 3678399 - [M] Putative glycosyl/glycerophosphate transferases involved in teichoic tagE CDS COG0438 3678399 3680420 - [M] Glycosyltransferase tagD CDS COG0615 3680581 3680970 - [MI] Cytidylyltransferase 2009 tagA CDS COG1922 3681370 3682140 + [M] Teichoic acid biosynthesis proteins tagB CDS COG1887 3682173 3683318 + [M] Putative glycosyl/glycerophosphate transferases involved in teichoic 2010 tagC CDS NA 3683438 3684766 + NA 2011 lytD CDS COG4193 3684826 3687468 - [G] Beta- N-acetylglucosaminidase 2012 pmiA CDS COG1482 3687597 3688547 - [G] Phosphomannose isomerase 2013 gerBA CDS ROG0098 3688812 3690263 + NA gerBB CDS ROG6746 3690269 3691375 + NA gerBC CDS ROG0038 3691372 3692496 + NA 2014 ywtG CDS COG0477 3692533 3693906 - [GEPR] Permeases of the major facilitator superfamily 2015 tagT CDS COG1316 3694239 3695207 + [K] Transcriptional regulator 2016 ribZB CDS COG0561 3695363 3696223 + [R] Predicted hydrolases of the HAD superfamily 2017 pgdS CDS COG0791 3696257 3697498 - [M] Cell wall-associated hydrolases (invasion-associated proteins) 2018 edmS CDS COG1593 3697639 3697806 - [G] TRAP-type C4-dicarboxylate transport system, large permease capA CDS COG2843 3697821 3698963 - [M] Putative enzyme of poly-gamma-glutamate biosynthesis (capsule capC CDS ROG1807 3698982 3699431 - NA capB CDS ROG1351 3699446 3700627 - NA 2019 rbsR CDS COG1609 3701411 3702391 + [K] Transcriptional regulators rbsK CDS COG0524 3702393 3703274 + [G] Sugar kinases, ribokinase family rbsD CDS COG1869 3703271 3703666 + [G] ABC-type ribose transport system, auxiliary component rbsA CDS COG1129 3703682 3705163 + [G] ABC-type sugar transport system, ATPase component rbsC CDS COG1172 3705165 3706133 + [G] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components rbsB CDS COG1879 3706145 3707062 + [G] ABC-type sugar transport system, periplasmic component 2020 ywsB CDS COG3103 3707144 3707680 + [T] SH3 domain protein 2021 ywsA CDS NA 3707836 3708132 + NA 2022 ywrO CDS COG2249 3708172 3708699 - [R] Putative NADPH-quinone reductase (modulator of drug 2023 alsD CDS COG3527 3708799 3709566 - [Q] Alpha-acetolactate decarboxylase alsS CDS COG0028 3709628 3711340 - [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate 2024 alsR CDS COG0583 3711498 3712406 + [K] Transcriptional regulator 2025 ywrK CDS COG1055 3712617 3713945 + [P] Na+/H+ antiporter NhaD and related arsenite 2026 ywrJ CDS NA 3714002 3714679 - NA cotB CDS ROG7136 3714739 3715881 - NA 2027 cotH CDS COG5337 3716009 3717097 - [M] Spore coat assembly protein 2028 cotG CDS NA 3717238 3717825 + NA cds-SOX90599.1 CDS NA 3717326 3717805 + NA 2029 ywrF CDS COG1853 3717999 3718616 + [R] Conserved protein/domain typically associated with flavoprotein 2030 ywrE CDS COG1277 3718794 3719129 + [R] ABC-type transport system involved in multi-copper 2031 hpxW CDS COG0405 3719134 3720711 - [E] Gamma-glutamyltransferase 2032 chrS CDS COG1522 3720925 3721401 + [K] Transcriptional regulators chrB CDS COG2059 3721415 3722008 + [P] Chromate transport protein ChrA chrA CDS COG2059 3722005 3722541 + [P] Chromate transport protein ChrA 2033 ywqO CDS COG1380 3722568 3722789 - [R] Putative effector of murein hydrolase LrgA ywqN CDS COG2249 3722786 3723331 - [R] Putative NADPH-quinone reductase (modulator of drug 2034 ywqM CDS COG0583 3723454 3724335 + [K] Transcriptional regulator 2035 nfi CDS COG1515 3724420 3725136 - [L] Deoxyinosine 3'endonuclease (endonuclease V) rttO CDS COG2849 3725146 3725610 - [S] Uncharacterized protein conserved in bacteria rttN CDS COG5444 3725600 3727408 - [S] Uncharacterized conserved protein ywqI CDS NA 3727427 3727687 - NA ywqH CDS ROG1153 3727697 3728119 - NA 2036 cds-SOX90600.1 CDS NA 3728336 3728461 - NA ywqG CDS COG3878 3728511 3729296 - [S] Uncharacterized protein conserved in bacteria 2037 uglF CDS COG1004 3729488 3730810 - [M] Predicted UDP-glucose 6-dehydrogenase ptpZ CDS COG4464 3731005 3731769 - [GM] Capsular polysaccharide biosynthesis protein ptkA CDS COG0455 3731822 3732535 - [D] ATPases involved in chromosome partitioning tkmA CDS COG3944 3732525 3733271 - [M] Capsular polysaccharide biosynthesis protein 2038 ywzD CDS NA 3733505 3733648 - NA 2039 ywqB CDS ROG6185 3733852 3735462 + NA hepA CDS COG0553 3735449 3738217 + [KL] Superfamily II DNA/RNA helicases, SNF2 family 2040 ywpJ CDS COG0561 3738343 3739200 - [R] Predicted hydrolases of the HAD superfamily glcR CDS COG1349 3739206 3739982 - [KG] Transcriptional regulators of sugar metabolism 2041 ssbB CDS COG0629 3740206 3740547 - [L] Single-stranded DNA-binding protein 2042 ywpG CDS NA 3740624 3741007 - NA 2043 ywpF CDS ROG2069 3741182 3741592 + NA 2044 ywpE CDS COG3764 3741732 3742040 - [M] Sortase (surface protein transpeptidase) 2045 ywpD CDS COG2972 3742384 3743220 + [T] Predicted signal transduction protein with a 2046 mscL CDS COG1970 3743267 3743659 - [M] Large-conductance mechanosensitive channel 2047 fabZ CDS COG0764 3743732 3744157 - [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 2048 rapD CDS COG0457 3744349 3745413 + [R] FOG: TPR repeat 2049 flhP CDS COG4786 3745436 3746245 - [N] Flagellar basal body rod protein flhO CDS COG4786 3746279 3747091 - [N] Flagellar basal body rod protein mbl CDS COG1077 3747254 3748255 - [D] Actin-like ATPase involved in cell morphogenesis spoIIID CDS ROG0101 3748421 3748702 - NA usd CDS NA 3748717 3748827 - NA 2050 ywoH CDS COG1846 3749052 3749465 + [K] Transcriptional regulators ywoG CDS COG0477 3749487 3750677 + [GEPR] Permeases of the major facilitator superfamily 2051 ywoF CDS ROG0923 3750768 3752174 - NA 2052 pucI CDS COG1953 3752280 3753752 - [FH] Cytosine/uracil/thiamine/allantoin permeases 2053 ywoD CDS COG0477 3753933 3755291 - [GEPR] Permeases of the major facilitator superfamily ywoC CDS COG1335 3755291 3755860 - [Q] Amidases related to nicotinamidase 2054 ywoB CDS ROG6081 3756044 3756508 - NA 2055 amtB CDS COG0004 3756790 3758004 + [P] Ammonia permease glnK CDS COG0347 3758016 3758366 + [E] Nitrogen regulatory protein PII 2056 bcrC CDS COG0671 3758547 3759128 + [I] Membrane-associated phospholipid phosphatase 2057 ywnJ CDS ROG0518 3759169 3759591 - NA 2058 spoIIQ CDS COG0739 3759702 3760553 - [M] Membrane proteins related to metalloendopeptidases 2059 ywnH CDS COG1247 3760694 3761185 + [M] Sortase and related acyltransferases ywnG CDS COG4711 3761182 3761700 + [S] Predicted membrane protein 2060 cds-SOX90601.1 CDS NA 3761859 3761990 + NA 2061 ywnF CDS NA 3761987 3762421 - NA 2062 clsA CDS COG1502 3762664 3764112 + [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 2063 mta CDS COG0789 3764133 3764906 - [K] Predicted transcriptional regulators 2064 ywnC CDS NA 3765051 3765434 + NA 2065 ywnB CDS COG2910 3765469 3766110 - [R] Putative NADH-flavin reductase ywnA CDS COG1959 3766178 3766579 - [K] Predicted transcriptional regulator 2066 ureC CDS COG0804 3766714 3768423 - [E] Urea amidohydrolase (urease) alpha subunit ureB CDS COG0832 3768420 3768794 - [E] Urea amidohydrolase (urease) beta subunit ureA CDS COG0831 3768791 3769108 - [E] Urea amidohydrolase (urease) gamma subunit 2067 ywzE CDS NA 3769289 3769453 - NA 2068 ywzF CDS COG0683 3769626 3769808 - [E] ABC-type branched-chain amino acid transport systems, 2069 csbD CDS COG3237 3770104 3770292 - [S] Uncharacterized protein conserved in bacteria 2070 ywmF CDS NA 3770365 3770865 - NA 2071 rapB CDS COG0457 3771000 3772133 - [R] FOG: TPR repeat 2072 moaA CDS COG2896 3772325 3773350 - [H] Molybdenum cofactor biosynthesis enzyme fdhD CDS COG1526 3773366 3774154 - [C] Uncharacterized protein required for formate dehydrogenase 2073 ywmE CDS ROG4597 3774400 3774561 - NA 2074 ywmD CDS COG2304 3774655 3775329 - [R] Uncharacterized protein containing a von Willebrand cds-SOX90602.1 CDS NA 3775382 3775522 - NA 2075 ywmC CDS COG2304 3775653 3776336 - [R] Uncharacterized protein containing a von Willebrand 2076 spoIID CDS COG2385 3776722 3777753 - [D] Sporulation protein and related proteins 2077 murAA CDS COG0766 3777949 3779259 - [M] UDP-N-acetylglucosamine enolpyruvyl transferase ywmB CDS ROG4616 3779293 3780033 - NA 2078 ywzB CDS COG4836 3780162 3780392 - [S] Predicted membrane protein 2079 ywmA CDS NA 3780562 3781035 + NA 2080 atpC CDS COG0355 3781069 3781467 - [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial atpD CDS COG0055 3781491 3782912 - [C] F0F1-type ATP synthase, beta subunit atpG CDS COG0224 3782938 3783801 - [C] F0F1-type ATP synthase, gamma subunit atpA CDS COG0056 3783878 3785386 - [C] F0F1-type ATP synthase, alpha subunit atpH CDS COG0712 3785403 3785948 - [C] F0F1-type ATP synthase, delta subunit (mitochondrial atpF CDS COG0711 3785945 3786457 - [C] F0F1-type ATP synthase, subunit b atpE CDS COG0636 3786620 3786832 - [C] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, atpB CDS COG0356 3786878 3787612 - [C] F0F1-type ATP synthase, subunit a atpI CDS ROG3812 3787620 3788003 - NA 2081 upp CDS COG0035 3788426 3789055 - [F] Uracil phosphoribosyltransferase glyA CDS COG0112 3789190 3790437 - [E] Glycine/serine hydroxymethyltransferase 2082 ywlG CDS COG4475 3790644 3791186 - [S] Uncharacterized protein conserved in bacteria rpiB CDS COG0698 3791199 3791648 - [G] Ribose 5-phosphate isomerase RpiB prpB CDS COG0394 3791805 3792257 - [T] Protein-tyrosine-phosphatase mntP CDS COG1971 3792333 3792890 - [S] Predicted membrane protein tsaC CDS COG0009 3792969 3794009 - [J] Putative translation factor (SUA5) ywlB CDS COG1246 3794166 3794609 - [E] N-acetylglutamate synthase and related acetyltransferases 2083 spoIIR CDS ROG0078 3794676 3795350 - NA 2084 ywlA CDS NA 3795491 3795853 + NA 2085 ywkF CDS ROG7470 3795870 3796157 - NA prmC CDS COG2890 3796217 3797083 - [J] Methylase of polypeptide chain release factors prfA CDS COG0216 3797085 3798155 - [J] Protein chain release factor A 2086 ywkD CDS COG0346 3798281 3798667 + [E] Lactoylglutathione lyase and related lyases 2087 racA CDS COG2452 3798789 3799343 + [L] Predicted site-specific integrase-resolvase 2088 ywkB CDS COG0679 3799377 3800336 - [R] Predicted permeases maeA CDS COG0281 3800418 3802166 - [C] Malic enzyme 2089 tdk CDS COG1435 3802405 3802992 - [F] Thymidine kinase rpmEA CDS COG0254 3803081 3803281 - [J] Ribosomal protein L31 rho CDS COG1158 3803400 3804683 - [K] Transcription termination factor cds-CCQ48606.1 CDS NA 3804714 3804875 - NA 2090 glpX CDS COG1494 3805090 3806055 - [G] Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins murAB CDS COG0766 3806086 3807375 - [M] UDP-N-acetylglucosamine enolpyruvyl transferase 2091 tal CDS COG0176 3807754 3808392 - [G] Transaldolase fbaA CDS COG0191 3808512 3809369 - [G] Fructose/tagatose bisphosphate aldolase 2092 spo0F CDS COG2204 3809550 3809924 - [T] Response regulator containing CheY-like receiver, AAA-type 2093 ywjG CDS ROG2845 3810090 3810611 + NA 2094 pyrG CDS COG0504 3810693 3812300 - [F] CTP synthase (UTP-ammonia lyase) rpoE CDS COG3343 3812542 3813063 - [K] DNA-directed RNA polymerase, delta subunit 2095 acdA CDS COG1960 3813246 3814385 - [I] Acyl-CoA dehydrogenases fadF CDS COG0247 3814382 3816499 - [C] Fe-S oxidoreductase 2096 clsB CDS COG1502 3816654 3817850 + [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes uvsE CDS COG4294 3817863 3818825 + [L] UV damage repair endonuclease 2097 ywjC CDS NA 3818906 3819178 + NA 2098 ywjB CDS COG1985 3819220 3819744 - [H] Pyrimidine reductase, riboflavin biosynthesis ywjA CDS COG1132 3819754 3821481 - [V] ABC-type multidrug transport system, ATPase and clsC CDS COG1502 3821570 3823072 - [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes 2099 narI CDS COG2181 3823558 3824229 - [C] Nitrate reductase gamma subunit narJ CDS COG2180 3824226 3824780 - [C] Nitrate reductase delta subunit narH CDS COG1140 3824806 3826269 - [C] Nitrate reductase beta subunit narG CDS COG5013 3826259 3829945 - [C] Nitrate reductase alpha subunit 2100 arfM CDS NA 3830141 3830617 - NA 2101 ywiC CDS ROG0960 3830761 3831480 + NA 2102 fnr CDS COG0664 3831512 3832228 - [T] cAMP-binding proteins - catabolite gene activator narK CDS COG2223 3832327 3833514 - [P] Nitrate/nitrite transporter 2103 argS CDS COG0018 3833650 3835320 - [J] Arginyl-tRNA synthetase ywiB CDS COG4506 3835317 3835745 - [S] Uncharacterized protein conserved in bacteria 2104 sboA CDS NA 3836058 3836189 + NA sboX CDS NA 3836146 3836298 + NA albA CDS COG0535 3836323 3837669 + [R] Predicted Fe-S oxidoreductases albB CDS ROG0137 3837682 3837843 + NA albC CDS COG4555 3837840 3838559 + [CP] ABC-type Na+ transport system, ATPase component albD CDS NA 3838552 3839862 + NA albE CDS NA 3839852 3841012 + NA albF CDS COG0612 3841017 3842297 + [R] Predicted Zn-dependent peptidases albG CDS ROG1450 3842294 3842995 + NA 2105 ywhL CDS COG3391 3843001 3844377 - [S] Uncharacterized conserved protein ywhK CDS COG3391 3844416 3845771 - [S] Uncharacterized conserved protein 2106 rapF CDS COG0457 3846001 3847146 + [R] FOG: TPR repeat phrF CDS NA 3847130 3847249 + NA 2107 ywhH CDS COG2606 3847348 3847821 + [S] Uncharacterized conserved protein 2108 speB CDS COG0010 3847853 3848725 - [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family speE CDS COG0421 3848786 3849616 - [E] Spermidine synthase 2109 pbpG CDS COG0744 3849818 3851893 + [M] Membrane carboxypeptidase (penicillin-binding protein) 2110 ywhD CDS ROG1708 3852186 3852704 - NA ywhC CDS COG1994 3852718 3853377 - [R] Zn-dependent proteases 2111 hmtB CDS COG1942 3853486 3853674 + [R] Uncharacterized protein, 4-oxalocrotonate tautomerase homolog 2112 ywhA CDS COG1846 3853717 3854136 - [K] Transcriptional regulators 2113 thrZ CDS COG0441 3854256 3856172 - [J] Threonyl-tRNA synthetase 2114 cds-SOX90603.1 CDS NA 3856782 3856937 - NA 2115 mmr CDS NA 3857017 3858417 - NA ywgB CDS COG1959 3858417 3858887 - [K] Predicted transcriptional regulator 2116 ywgA CDS COG3465 3858999 3859499 - [S] Uncharacterized conserved protein ywfO CDS COG1078 3859535 3860836 - [R] HD superfamily phosphohydrolases 2117 ywzC CDS ROG3018 3860998 3861222 - NA 2118 psrF CDS ROG2785 3861437 3862213 + NA 2119 ywfM CDS COG0697 3862357 3863247 - [GER] Permeases of the drug/metabolite transporter (DMT) 2120 lipL CDS COG0095 3863415 3864260 - [H] Lipoate-protein ligase A cysL CDS COG0583 3864309 3865208 - [K] Transcriptional regulator 2121 pta CDS COG0280 3865355 3866326 - [C] Phosphotransacetylase 2122 hemQ CDS COG3253 3866596 3867360 + [S] Uncharacterized conserved protein 2123 bacG CDS COG1028 3867493 3868272 + [IQR] Dehydrogenases with different specificities (related to 2124 bacF CDS COG0436 3868287 3869486 - [E] Aspartate/tyrosine/aromatic aminotransferase bacE CDS NA 3869487 3870671 - NA bacD CDS ROG5589 3870668 3872086 - NA bacC CDS COG1028 3872105 3872866 - [IQR] Dehydrogenases with different specificities (related to bacB CDS COG1917 3872869 3873576 - [S] Uncharacterized conserved protein, contains double-stranded beta-helix bacA CDS COG0077 3873566 3874180 - [E] Prephenate dehydratase 2125 ywfA CDS COG2814 3874332 3875570 - [G] Arabinose efflux permease rocC CDS COG0833 3875780 3877192 - [E] Amino acid transporters rocB CDS COG4187 3877192 3878892 - [E] Arginine degradation protein (predicted deacylase) 2126 rocA CDS COG1012 3878966 3880513 - [C] NAD-dependent aldehyde dehydrogenases rocG CDS COG0334 3880740 3882014 - [E] Glutamate dehydrogenase/leucine dehydrogenase 2127 bslB CDS NA 3882191 3882655 - NA 2128 spsL CDS ROG1675 3882979 3883434 - NA spsK CDS COG1091 3883427 3884278 - [M] dTDP-4-dehydrorhamnose reductase spsJ CDS COG1088 3884292 3885239 - [M] dTDP-D-glucose 4,6-dehydratase spsI CDS COG1209 3885239 3885979 - [M] dTDP-glucose pyrophosphorylase spsG CDS COG3980 3886004 3887023 - [M] Spore coat polysaccharide biosynthesis protein, predicted spsF CDS COG1861 3887026 3887748 - [M] Spore coat polysaccharide biosynthesis protein F, spsE CDS COG2089 3887741 3888862 - [M] Sialic acid synthase spsD CDS COG0454 3888862 3889731 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases spsC_2 COG0399 [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved spsB CDS COG1887 3890922 3892346 - [M] Putative glycosyl/glycerophosphate transferases involved in teichoic spsA CDS COG1216 3892351 3893121 - [R] Predicted glycosyltransferases 2129 gerQ CDS ROG2622 3893441 3893986 + NA 2130 ywdK CDS COG2363 3894030 3894401 - [S] Uncharacterized small membrane protein ywdJ CDS COG2233 3894463 3895785 - [F] Xanthine/uracil permeases ywdI CDS NA 3895805 3896122 - NA 2131 ywdH CDS COG1012 3896290 3897660 + [C] NAD-dependent aldehyde dehydrogenases 2132 ung CDS COG0692 3897685 3898362 - [L] Uracil DNA glycosylase ywdF CDS COG0463 3898376 3899182 - [M] Glycosyltransferases involved in cell wall biogenesis 2133 ywdE CDS NA 3899272 3899805 - NA ywdD CDS COG4709 3899853 3900488 - [S] Predicted membrane protein ywzG CDS COG1695 3900481 3900819 - [K] Predicted transcriptional regulators 2134 pdxK CDS COG0351 3900963 3901778 + [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 2135 ywdA CDS NA 3901868 3902116 - NA 2136 sacA CDS COG1621 3902210 3903649 - [G] Beta-fructosidases (levanase/invertase) sacP CDS COG1263 3903646 3905031 - [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 2137 nirC CDS COG2116 3905333 3906103 + [P] Formate/nitrite family of transporters 2138 sacT CDS COG3711 3906142 3906972 - [K] Transcriptional antiterminator ywcI CDS NA 3907012 3907314 - NA 2139 vpr CDS COG1404 3907844 3910264 + [O] Subtilisin-like serine proteases 2140 ywcH CDS COG2141 3910302 3911303 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and nfrAA CDS COG0778 3911477 3912226 - [C] Nitroreductase 2141 rodA CDS COG0772 3912332 3913513 - [D] Bacterial cell division membrane protein 2142 ywcE CDS NA 3914009 3914272 + NA 2143 qoxD CDS COG3125 3914315 3914689 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 4 qoxC CDS COG1845 3914691 3915305 - [C] Heme/copper-type cytochrome/quinol oxidase, subunit 3 qoxB CDS COG0843 3915319 3917268 - [C] Heme/copper-type cytochrome/quinol oxidases, subunit 1 qoxA CDS COG1622 3917296 3918261 - [C] Heme/copper-type cytochrome/quinol oxidases, subunit 2 2144 ywzA CDS COG2261 3918777 3919022 + [S] Predicted membrane protein 2145 galT CDS COG4468 3919093 3920634 - [G] Galactose-1-phosphate uridyltransferase galK CDS COG0153 3920638 3921810 - [G] Galactokinase 2146 ywcD CDS COG2246 3921891 3922274 - [S] Predicted membrane protein slrC CDS COG1309 3922292 3922963 - [K] Transcriptional regulator 2147 slrA CDS NA 3923319 3923477 + NA 2148 vbfB CDS COG3162 3923920 3924228 + [S] Predicted membrane protein vbfA CDS COG4147 3924225 3925766 + [R] Predicted symporter 2149 ywbO CDS COG2761 3925797 3926399 - [Q] Predicted dithiol-disulfide isomerase involved in polyketide 2150 efeB CDS COG2837 3926682 3927932 - [P] Predicted iron-dependent peroxidase efeM CDS COG2822 3927951 3929108 - [P] Predicted periplasmic lipoprotein involved in iron efeU CDS COG0672 3929105 3930550 - [P] High-affinity Fe2+/Pb2+ permease 2151 thiE CDS COG0352 3930707 3931375 - [H] Thiamine monophosphate synthase thiM CDS COG2145 3931372 3932190 - [H] Hydroxyethylthiazole kinase, sugar kinase family cidR CDS COG0583 3932198 3933103 - [K] Transcriptional regulator 2152 cidA CDS COG1380 3933209 3933595 + [R] Putative effector of murein hydrolase LrgA cidB CDS COG1346 3933577 3934254 + [M] Putative effector of murein hydrolase 2153 ywbF CDS COG0477 3934358 3935557 + [GEPR] Permeases of the major facilitator superfamily ywbE CDS COG4895 3935591 3935788 + [S] Uncharacterized conserved protein 2154 rlmI CDS COG1092 3935824 3937014 - [R] Predicted SAM-dependent methyltransferases 2155 glxA CDS COG0346 3937135 3937515 + [E] Lactoylglutathione lyase and related lyases 2156 ywbB CDS NA 3937553 3938230 - NA 2157 ywbA CDS COG1455 3938307 3939641 - [G] Phosphotransferase system cellobiose-specific component IIC 2158 epr CDS COG1404 3939869 3941806 + [O] Subtilisin-like serine proteases 2159 sacX CDS COG1263 3942234 3943613 + [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific sacY CDS COG3711 3943667 3944509 + [K] Transcriptional antiterminator 2160 gspA CDS COG1442 3944560 3945420 - [M] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 2161 ywaF CDS COG5522 3945530 3946243 - [S] Predicted integral membrane protein 2162 tyrZR CDS COG1846 3946394 3946909 + [K] Transcriptional regulators 2163 tyrZ CDS COG0162 3947158 3948399 + [J] Tyrosyl-tRNA synthetase 2164 eapD CDS COG2234 3948555 3949922 + [R] Predicted aminopeptidases 2165 relQ CDS COG2357 3949952 3950584 - [S] Uncharacterized protein conserved in bacteria 2166 menA CDS COG1575 3950726 3951661 - [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2167 cds-SOX90604.1 CDS NA 3951824 3951958 - NA 2168 ywzH CDS ROG7624 3952108 3952257 + NA dltA CDS COG1020 3952275 3953786 + [Q] Non-ribosomal peptide synthetase modules and related dltB CDS COG1696 3953783 3954970 + [M] Predicted membrane protein involved in D-alanine dltC CDS COG0236 3954987 3955223 + [IQ] Acyl carrier protein dltD CDS COG3966 3955223 3956401 + [M] Protein involved in D-alanine esterification of dltE CDS COG3967 3956492 3957250 + [M] Short-chain dehydrogenase involved in D-alanine esterification 2169 ilvK CDS COG0115 3957391 3958482 + [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 2170 licH CDS COG1486 3958516 3959844 - [G] Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases licA CDS COG1447 3959841 3960173 - [G] Phosphotransferase system cellobiose-specific component IIA licC CDS COG1455 3960192 3961550 - [G] Phosphotransferase system cellobiose-specific component IIC licB CDS COG1440 3961566 3961874 - [G] Phosphotransferase system cellobiose-specific component IIB licR CDS COG3711 3962003 3963928 - [K] Transcriptional antiterminator 2171 yxzF CDS NA 3964091 3964249 - NA aag CDS COG2094 3964278 3964868 - [L] 3-methyladenine DNA glycosylase 2172 katX CDS COG0753 3964997 3966640 + [P] Catalase 2173 yxlH CDS NA 3966745 3967947 + NA 2174 yxlG CDS COG1277 3967944 3968720 - [R] ABC-type transport system involved in multi-copper yxlF CDS COG1131 3968717 3969604 - [V] ABC-type multidrug transport system, ATPase component yxlE CDS ROG5718 3969611 3969799 - NA yxlD CDS ROG5462 3969796 3970002 - NA yxlC CDS NA 3969999 3970319 - NA sigY CDS COG1595 3970312 3970848 - [K] DNA-directed RNA polymerase specialized sigma subunit, 2175 yxlA CDS COG1457 3971060 3972433 + [F] Purine-cytosine permease and related proteins 2176 nnrA CDS COG0063 3972448 3973278 - [G] Predicted sugar kinase 2177 cydD CDS COG4987 3973364 3975091 - [CO] ABC-type transport system involved in cytochrome cydC CDS COG4988 3975088 3976791 - [CO] ABC-type transport system involved in cytochrome cydB CDS COG1294 3976791 3977807 - [C] Cytochrome bd-type quinol oxidase, subunit 2 cydA CDS COG1271 3977791 3979197 - [C] Cytochrome bd-type quinol oxidase, subunit 1 2178 cimH CDS COG3493 3979753 3981105 + [C] Na+/citrate symporter 2179 yxkI CDS NA 3981227 3982915 + NA yxzE CDS ROG1462 3982973 3983173 + NA 2180 yxkH CDS COG0726 3983187 3984026 - [G] Predicted xylanase/chitin deacetylase 2181 msmX CDS COG3839 3984133 3985230 - [G] ABC-type sugar transport systems, ATPase components yxkF CDS COG2508 3985351 3986244 - [TQ] Regulator of polyketide synthase expression 2182 aldY CDS COG1012 3986428 3987885 + [C] NAD-dependent aldehyde dehydrogenases 2183 gdnE CDS COG1284 3987927 3988763 - [S] Uncharacterized conserved protein 2184 yxkC CDS ROG1691 3989331 3989873 + NA 2185 galE CDS COG1087 3989948 3990967 - [M] UDP-glucose 4-epimerase 2186 yxkA CDS COG1881 3991082 3991588 - [R] Phospholipid-binding protein 2187 yxjO CDS COG0583 3991718 3992593 + [K] Transcriptional regulator 2188 yxjN CDS NA 3992671 3993144 + NA yxjM CDS COG4585 3993162 3994382 + [T] Signal transduction histidine kinase yxjL CDS COG2197 3994369 3995025 + [TK] Response regulator containing a CheY-like receiver pepT CDS COG2195 3995075 3996307 + [E] Di- and tripeptidases 2189 yxjJ CDS ROG7435 3996829 3997092 + NA 2190 yxjI CDS COG4894 3997221 3997709 + [S] Uncharacterized conserved protein 2191 yxjH CDS COG0620 3997964 3999097 + [E] Methionine synthase II (cobalamin-independent) yxjG CDS COG0620 3999350 4000486 + [E] Methionine synthase II (cobalamin-independent) 2192 yxjF CDS COG1028 4000539 4001312 - [IQR] Dehydrogenases with different specificities (related to scoB CDS COG2057 4001329 4001979 - [I] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit scoA CDS COG1788 4001976 4002692 - [I] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit yxjC CDS COG2610 4002716 4004134 - [GE] H+/gluconate symporter and related permeases 2193 rlmA CDS COG0500 4004288 4005136 - [QR] SAM-dependent methyltransferases 2194 nupG CDS COG1972 4005752 4006945 + [F] Nucleoside permease 2195 yxiTc CDS ROG0285 4006987 4007415 - NA yxiTn CDS NA 4007416 4007658 - NA 2196 yxiS CDS NA 4007803 4008093 - NA katE CDS COG0753 4008143 4010203 - [P] Catalase 2197 citH CDS COG2851 4010404 4011684 + [C] H+/citrate symporter 2198 bglS CDS COG2273 4011842 4012570 - [G] Beta-glucanase/Beta-glucan synthetase licT CDS COG3711 4012866 4013699 - [K] Transcriptional antiterminator 2199 yxiP CDS NA 4013795 4014475 - NA 2200 yxiO CDS COG2270 4014682 4015968 + [R] Permeases of the major facilitator superfamily 2201 deaD CDS COG0513 4015987 4017426 - [LKJ] Superfamily II DNA and RNA helicases 2202 yxiM CDS COG3401 4017508 4018656 - [R] Fibronectin type 3 domain-containing protein 2203 yxzI CDS NA 4018786 4018974 - NA yxzJ CDS NA 4019005 4019136 - NA yxiK CDS NA 4019148 4019609 - NA yxiJ CDS NA 4019625 4019921 - NA yxiI CDS NA 4019949 4020437 - NA yxzG CDS NA 4020455 4020907 - NA 2204 yxiH CDS NA 4020977 4021306 - NA 2205 yxiG CDS NA 4021429 4021845 - NA yxzC CDS NA 4021896 4022264 - NA yxiF CDS NA 4022258 4022728 - NA 2206 wapI CDS COG3780 4023054 4023482 - [L] DNA endonuclease related to intein-encoded endonucleases wapA CDS COG3209 4023544 4030548 - [M] Rhs family protein 2207 yxxF CDS COG0697 4030710 4031645 - [GER] Permeases of the drug/metabolite transporter (DMT) 2208 yxiE CDS COG0589 4031797 4032243 - [T] Universal stress protein UspA and related 2209 bglH CDS COG2723 4032346 4033755 - [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase bglP CDS COG2190 4033778 4035607 - [G] Phosphotransferase system IIA components 2210 yxxE CDS NA 4035990 4036298 - NA rtbE CDS ROG6489 4036344 4036787 - NA rtbD CDS COG5444 4036784 4038493 - [S] Uncharacterized conserved protein yxiC CDS NA 4038513 4038782 - NA yxiB CDS ROG3733 4038794 4039159 - NA 2211 abnB CDS COG3507 4039466 4040875 - [G] Beta-xylosidase 2212 yxzL CDS NA 4041009 4041173 - NA 2213 hutP CDS ROG6404 4041492 4041938 + NA 2214 hutH CDS COG2986 4042051 4043577 + [E] Histidine ammonia-lyase hutU CDS COG2987 4043574 4045232 + [E] Urocanate hydratase hutI CDS COG1228 4045245 4046510 + [Q] Imidazolonepropionase and related amidohydrolases hutG CDS COG0010 4046503 4047462 + [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family hutM CDS COG0833 4047538 4048965 + [E] Amino acid transporters 2215 pdp CDS COG0213 4049009 4050310 - [F] Thymidine phosphorylase nupC CDS COG1972 4050340 4051521 - [F] Nucleoside permease deoC CDS COG0274 4051602 4052273 - [F] Deoxyribose-phosphate aldolase deoR CDS COG2390 4052379 4053320 - [K] Transcriptional regulator, contains sigma factor-related N-terminal 2216 yxxB CDS ROG0162 4053454 4054281 - NA 2217 yxeR CDS COG3192 4054354 4055466 - [E] Ethanolamine utilization protein yxeQ CDS COG2079 4055536 4056873 - [R] Uncharacterized protein involved in propionate catabolism sndB CDS COG1473 4056870 4058012 - [R] Metal-dependent amidase/aminoacylase/carboxypeptidase yxeO CDS COG1126 4058029 4058778 - [E] ABC-type polar amino acid transport system, yxeN CDS COG0765 4058791 4059465 - [E] ABC-type amino acid transport system, permease yxeM CDS COG0834 4059488 4060282 - [ET] ABC-type amino acid transport/signal transduction systems, snaB CDS COG0454 4060307 4060804 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases yxeK CDS COG2141 4060818 4062143 - [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and 2218 yxeJ CDS NA 4062329 4062556 - NA yxeI CDS COG3049 4062543 4063529 - [M] Penicillin V acylase and related amidases 2219 hadM CDS COG0561 4063684 4064496 - [R] Predicted hydrolases of the HAD superfamily yxeG CDS ROG3380 4064536 4065093 - NA yxeF CDS COG4105 4065074 4065508 - [R] DNA uptake lipoprotein 2220 cotNE CDS ROG4662 4065597 4065962 + NA 2221 yxeD CDS ROG1210 4066210 4066563 + NA 2222 yxeC CDS ROG4286 4066607 4067005 - NA 2223 frxB CDS COG0614 4067183 4068148 + [P] ABC-type Fe3+-hydroxamate transport system, periplasmic component 2224 yxeA CDS COG5294 4068189 4068536 - [S] Uncharacterized protein conserved in bacteria tpeM CDS NA 4068550 4070418 - NA tpeL CDS COG1136 4070393 4071166 - [V] ABC-type antimicrobial peptide transport system, ATPase 2225 tpeK CDS COG2172 4071310 4072287 - [T] Anti-sigma regulatory factor (Ser/Thr protein kinase) tpeJ CDS COG0745 4072284 4072973 - [TK] Response regulators consisting of a CheY-like iolJ CDS COG0191 4073081 4073953 - [G] Fructose/tagatose bisphosphate aldolase iolI CDS COG1082 4073974 4074810 - [G] Sugar phosphate isomerases/epimerases iolH CDS COG1082 4074896 4075765 - [G] Sugar phosphate isomerases/epimerases iolG CDS COG0673 4075785 4076819 - [R] Predicted dehydrogenases and related proteins iolF CDS COG0477 4076842 4078158 - [GEPR] Permeases of the major facilitator superfamily iolE CDS COG1082 4078173 4079066 - [G] Sugar phosphate isomerases/epimerases iolD CDS COG3962 4079083 4080996 - [E] Acetolactate synthase iolC CDS COG0524 4081029 4082006 - [G] Sugar kinases, ribokinase family iolB CDS COG3718 4082030 4082845 - [G] Uncharacterized enzyme involved in inositol metabolism iolA CDS COG1012 4082920 4084383 - [C] NAD-dependent aldehyde dehydrogenases 2226 iolR CDS COG1349 4084799 4085554 + [KG] Transcriptional regulators of sugar metabolism iolS CDS COG0667 4085608 4086540 + [C] Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 2227 yxcE CDS NA 4086802 4087452 + NA yxcD CDS NA 4087456 4087764 + NA 2228 csbC CDS COG2814 4088002 4089387 + [G] Arabinose efflux permease 2229 htpG CDS COG0326 4089429 4091309 - [O] Molecular chaperone, HSP90 family 2230 yxcA CDS ROG3471 4091477 4091728 - NA 2231 yxbG CDS COG1028 4091845 4092666 + [IQR] Dehydrogenases with different specificities (related to 2232 yxbF CDS COG1309 4092695 4093837 - [K] Transcriptional regulator 2233 aldX CDS COG1012 4093980 4095317 + [C] NAD-dependent aldehyde dehydrogenases 2234 yxbD CDS COG0454 4095356 4095835 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2235 yxbC CDS COG2850 4095915 4096907 - [S] Uncharacterized conserved protein 2236 yxbB CDS COG0500 4097416 4098150 + [QR] SAM-dependent methyltransferases yxbA CDS ROG0733 4098150 4098419 + NA yxnB CDS COG1725 4098423 4098905 + [K] Predicted transcriptional regulators asnH CDS COG0367 4098926 4101169 + [E] Asparagine synthase (glutamine-hydrolyzing) yxaM CDS NA 4101166 4102365 + NA 2237 yxaL CDS COG1520 4102429 4103661 - [S] FOG: WD40-like repeat 2238 yxaJ CDS NA 4103762 4104187 - NA 2239 yxaI CDS COG1714 4104444 4104899 + [S] Predicted membrane protein/domain 2240 yxaH CDS COG2311 4104929 4106137 - [S] Predicted membrane protein 2241 qdoI CDS COG1396 4106245 4107258 - [K] Predicted transcriptional regulators qdoR CDS COG1309 4107352 4107927 - [K] Transcriptional regulator 2242 yxnA CDS COG0300 4108058 4109128 + [R] Short-chain dehydrogenases of various substrate specificities 2243 yxaD CDS NA 4109185 4109616 - NA 2244 yxzK CDS COG1380 4109843 4110247 + [R] Putative effector of murein hydrolase LrgA yxaC CDS COG1346 4110217 4110909 + [M] Putative effector of murein hydrolase 2245 yxaB CDS COG5039 4110949 4111980 - [GM] Exopolysaccharide biosynthesis protein glxK CDS COG1929 4112073 4113221 - [G] Glycerate kinase 2246 gntR CDS COG1802 4113417 4114148 + [K] Transcriptional regulators gntK CDS COG1070 4114141 4115682 + [G] Sugar (pentulose and hexulose) kinases gntP CDS COG2610 4115711 4117057 + [GE] H+/gluconate symporter and related permeases gntZ CDS COG0362 4117080 4118486 + [G] 6-phosphogluconate dehydrogenase 2247 ahpC CDS COG0450 4118950 4119513 + [O] Peroxiredoxin ahpF CDS COG3634 4119527 4121056 + [O] Alkyl hydroperoxide reductase, large subunit 2248 bglA CDS COG2723 4121166 4122605 - [G] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase ptsJ CDS COG2190 4122619 4122849 - [G] Phosphotransferase system IIA components 2249 yydK CDS COG2188 4123193 4123903 + [K] Transcriptional regulators yyzN CDS NA 4123931 4124089 + NA 2250 liaM CDS ROG7945 4124220 4124942 - NA liaL CDS COG4555 4124963 4125592 - [CP] ABC-type Na+ transport system, ATPase component 2251 liaK CDS ROG0722 4125742 4126500 - NA liaE CDS COG0641 4126481 4127440 - [R] Arylsulfatase regulator (Fe-S oxidoreductase) liaD CDS NA 4127498 4127647 - NA 2252 fbp CDS COG3855 4128119 4130044 + [G] Uncharacterized protein conserved in bacteria 2253 yydD CDS COG5293 4130578 4132338 - [S] Uncharacterized protein conserved in bacteria yydC CDS ROG6254 4132338 4132736 - NA yydB CDS COG1409 4132729 4134174 - [R] Predicted phosphohydrolases 2254 rlmH CDS COG1576 4134436 4134915 - [S] Uncharacterized conserved protein 2255 yyzF CDS NA 4134996 4135166 - NA 2256 yycS CDS NA 4135351 4135764 + NA 2257 yycR CDS COG1063 4135798 4137024 - [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases 2258 yyzG CDS ROG5662 4137087 4137257 - NA 2259 yycQ CDS COG3307 4137362 4137610 - [M] Lipid A core - O-antigen ligase yycP CDS COG1520 4137626 4138789 - [S] FOG: WD40-like repeat yycO CDS COG3863 4138800 4139537 - [S] Uncharacterized distant relative of cell wall-associated 2260 yycN CDS COG0454 4139679 4140149 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2261 rapG CDS COG0457 4140260 4141357 + [R] FOG: TPR repeat phrG CDS COG5584 4141358 4141474 + [S] Predicted small secreted protein 2262 argI CDS COG0010 4141711 4142601 - [E] Arginase/agmatinase/formimionoglutamate hydrolase, arginase family rocE CDS COG0833 4142675 4144078 - [E] Amino acid transporters 2263 rocD CDS COG4992 4144301 4145506 - [E] Ornithine/acetylornithine aminotransferase 2264 rocR CDS COG3829 4145747 4147132 + [KT] Transcriptional regulator containing PAS, AAA-type ATPase, 2265 yyzO CDS COG0642 4147114 4147302 - [T] Signal transduction histidine kinase 2266 cds-SOX90605.1 CDS NA 4147419 4147547 - NA htrC CDS COG0265 4147567 4148769 - [O] Trypsin-like serine proteases, typically periplasmic, contain walJ CDS COG1235 4148851 4149645 - [R] Metal-dependent hydrolases of the beta-lactamase superfamily walI CDS COG4853 4149667 4150509 - [S] Uncharacterized protein conserved in bacteria walH CDS COG4863 4150496 4151863 - [S] Uncharacterized protein conserved in bacteria walK CDS COG5002 4151853 4153688 - [T] Signal transduction histidine kinase walR CDS COG0745 4153696 4154403 - [TK] Response regulators consisting of a CheY-like 2267 trnY-Phe tRNA NA 4154787 4154859 - NA trnY-Asp tRNA NA 4154895 4154971 - NA trnY-Glu tRNA NA 4155053 4155124 - NA trnY-Lys tRNA NA 4155134 4155209 - NA 2268 purA CDS COG0104 4155433 4156725 - [F] Adenylosuccinate synthase 2269 yycE CDS ROG3574 4156931 4157350 - NA 2270 dnaC CDS COG0305 4157471 4158835 - [L] Replicative DNA helicase 2271 yycD CDS ROG0809 4159005 4159205 + NA 2272 yyzB CDS NA 4159253 4159456 - NA 2273 yycC CDS NA 4159577 4159717 + NA 2274 yycB CDS COG2807 4159790 4160998 + [P] Cyanate permease 2275 yycA CDS COG1807 4161103 4163160 + [M] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of 2276 rplI CDS COG0359 4163197 4163646 - [J] Ribosomal protein L9 gdpP CDS COG3887 4163643 4165622 - [T] Predicted signaling protein consisting of a yybS CDS COG4241 4165659 4166588 - [S] Predicted membrane protein 2277 yyzH CDS ROG3987 4166815 4166964 - NA 2278 cotF CDS COG5577 4167110 4167592 + [M] Spore coat protein 2279 hypR CDS COG1733 4167622 4167999 - [K] Predicted transcriptional regulators 2280 ppaC CDS COG1227 4168204 4169133 + [C] Inorganic pyrophosphatase/exopolyphosphatase 2281 yybP CDS ROG4231 4169166 4169612 - NA 2282 yybO CDS COG2271 4170045 4171352 + [G] Sugar phosphate permease 2283 yyzI CDS NA 4171396 4171635 - NA yyzJ CDS COG4319 4171625 4171789 - [S] Ketosteroid isomerase homolog cds-SOX90606.1 CDS NA 4171801 4171986 - NA 2284 yyzK CDS NA 4172259 4172405 - NA yyzL CDS NA 4172387 4172536 - NA 2285 yybN CDS NA 4173114 4173551 + NA 2286 yybM CDS ROG5479 4173665 4174420 + NA yybL CDS NA 4174410 4175120 + NA yybK CDS NA 4175117 4175872 + NA yybJ CDS COG4555 4175869 4176525 + [CP] ABC-type Na+ transport system, ATPase component 2287 ictI CDS ROG1132 4176900 4177688 - NA 2288 yybH CDS COG4319 4177756 4178145 - [S] Ketosteroid isomerase homolog 2289 yybG CDS COG1357 4178291 4179130 + [S] Uncharacterized low-complexity proteins 2290 yybF CDS COG0477 4179163 4180377 - [GEPR] Permeases of the major facilitator superfamily 2291 yybE CDS COG0583 4180564 4181442 + [K] Transcriptional regulator yybD CDS COG0454 4181456 4181899 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2292 yybC CDS ROG2253 4181982 4182461 + NA 2293 yybB CDS COG0491 4182636 4183298 - [R] Zn-dependent hydrolases, including glyoxylases 2294 yybA CDS COG1846 4183445 4183897 - [K] Transcriptional regulators 2295 yyaT CDS COG0454 4184017 4184463 + [KR] Histone acetyltransferase HPA2 and related acetyltransferases yyaS CDS COG2364 4184460 4185065 + [S] Predicted membrane protein 2296 yyaR CDS COG0454 4185160 4185681 - [KR] Histone acetyltransferase HPA2 and related acetyltransferases 2297 yyaQ CDS COG2315 4186092 4186448 + [S] Uncharacterized protein conserved in bacteria 2298 yyaP CDS COG1985 4186608 4187174 + [H] Pyrimidine reductase, riboflavin biosynthesis 2299 tetB CDS NA 4187681 4189057 - NA tetL CDS NA 4189091 4189153 - NA 2300 yyaO CDS COG1331 4189406 4189645 + [O] Highly conserved protein containing a thioredoxin 2301 yyaN CDS COG0789 4189796 4190212 + [K] Predicted transcriptional regulators yyaM CDS COG0697 4190209 4191126 + [GER] Permeases of the drug/metabolite transporter (DMT) 2302 yyaL CDS COG1331 4191198 4193267 + [O] Highly conserved protein containing a thioredoxin 2303 yyaK CDS COG1266 4193264 4194163 - [R] Predicted metal-dependent membrane protease 2304 yyaJ CDS COG2211 4194389 4195744 + [G] Na+/melibiose symporter and related transporters 2305 maa CDS COG0110 4195778 4196332 - [R] Acetyltransferase (isoleucine patch superfamily) yyaH CDS COG3607 4196350 4196730 - [R] Predicted lactoylglutathione lyase ccpB CDS COG1609 4196786 4197721 - [K] Transcriptional regulators exoA CDS COG0708 4197780 4198538 - [L] Exonuclease III 2306 rpsR CDS COG0238 4198603 4198842 - [J] Ribosomal protein S18 ssbA CDS COG0629 4198886 4199404 - [L] Single-stranded DNA-binding protein rpsF CDS COG0360 4199445 4199732 - [J] Ribosomal protein S6 engD CDS COG0012 4199843 4200943 - [J] Predicted GTPase, probable translation factor 2307 yyaE CDS COG0243 4201070 4203073 - [C] Anaerobic dehydrogenases, typically selenocysteine-containing yyzM CDS COG4481 4203124 4203330 - [S] Uncharacterized protein conserved in bacteria yyaD CDS COG3949 4203424 4204440 - [S] Uncharacterized membrane protein 2308 sprC CDS ROG0104 4204900 4205517 + NA 2309 parB CDS COG1475 4205556 4206404 - [K] Predicted transcriptional regulators parA CDS COG1192 4206397 4207158 - [D] ATPases involved in chromosome partitioning 2310 yyaB CDS ROG1507 4207406 4207846 + NA 2311 nocA CDS COG1475 4207897 4208748 - [K] Predicted transcriptional regulators rsmG CDS COG0357 4208870 4209589 - [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial trmF CDS COG0445 4209603 4211489 - [D] NAD/FAD-utilizing enzyme apparently involved in cell mnmE CDS COG0486 4211510 4212889 - [R] Predicted GTPase 2312 jag CDS COG1847 4213200 4213826 - [R] Predicted RNA-binding protein oxaAA CDS COG0706 4213823 4214608 - [U] Preprotein translocase subunit YidC rnpA CDS COG0594 4214753 4215103 - [J] RNase P protein component rpmH CDS COG0230 4215255 4215389 - [J] Ribosomal protein L34