Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.5.1, (Release date: Sun Jan 29 10:33:12 2023 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE NEGATIVE.fasta
Database contains 5185 sequences, 129625 residues
MOTIFS ./meme_out/meme.txt (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
WNVAGGADNB | 10 | ACGAGGAATT |
Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
WNVAGGADNB | MEME-1 | Seq5040 | - | 6 | 15 | 1.13e-05 | 1 | ACGAGGAACG |
WNVAGGADNB | MEME-1 | Seq2764 | + | 7 | 16 | 3.58e-05 | 1 | ACAAGGAACT |
WNVAGGADNB | MEME-1 | Seq1536 | + | 16 | 25 | 4.41e-05 | 1 | TCGAGGAACG |
WNVAGGADNB | MEME-1 | Seq3539 | - | 7 | 16 | 7.19e-05 | 1 | ACCAGGAATT |
WNVAGGADNB | MEME-1 | Seq871 | - | 6 | 15 | 7.37e-05 | 1 | TGGAGGAGTT |
WNVAGGADNB | MEME-1 | Seq1152 | - | 16 | 25 | 7.37e-05 | 1 | TGGAGGAGTT |
WNVAGGADNB | MEME-1 | Seq4840 | - | 13 | 22 | 0.000104 | 1 | TTGAGGAATG |
WNVAGGADNB | MEME-1 | Seq915 | + | 10 | 19 | 0.00011 | 1 | ACCAGGAGCT |
WNVAGGADNB | MEME-1 | Seq215 | + | 10 | 19 | 0.000117 | 1 | TCAAGGAACG |
WNVAGGADNB | MEME-1 | Seq4203 | - | 5 | 14 | 0.000117 | 1 | AGAAGGAATG |
WNVAGGADNB | MEME-1 | Seq4363 | - | 9 | 18 | 0.000123 | 1 | ACGAGGATTT |
WNVAGGADNB | MEME-1 | Seq643 | - | 6 | 15 | 0.000147 | 1 | ACGAGGCGTT |
WNVAGGADNB | MEME-1 | Seq4401 | + | 5 | 14 | 0.00016 | 1 | ACCAGGAACG |
WNVAGGADNB | MEME-1 | Seq750 | - | 5 | 14 | 0.00016 | 1 | TCGAGGAGGG |
WNVAGGADNB | MEME-1 | Seq489 | - | 14 | 23 | 0.00016 | 1 | CCGAGGAGTG |
WNVAGGADNB | MEME-1 | Seq4828 | + | 7 | 16 | 0.000183 | 1 | AGAAGGAAAG |
WNVAGGADNB | MEME-1 | Seq4687 | + | 10 | 19 | 0.000189 | 1 | AAGAGGAGAT |
WNVAGGADNB | MEME-1 | Seq4163 | + | 10 | 19 | 0.000195 | 1 | TTAAGGAATT |
WNVAGGADNB | MEME-1 | Seq932 | + | 8 | 17 | 0.000226 | 1 | AGCAGGAGTT |
WNVAGGADNB | MEME-1 | Seq755 | - | 7 | 16 | 0.000232 | 1 | TCAAGGAACC |
WNVAGGADNB | MEME-1 | Seq4143 | + | 8 | 17 | 0.000238 | 1 | ATCAGGAATT |
WNVAGGADNB | MEME-1 | Seq3374 | - | 14 | 23 | 0.000244 | 1 | TCGAGGATTT |
WNVAGGADNB | MEME-1 | Seq3531 | + | 1 | 10 | 0.000252 | 1 | TGAAGGAGAT |
WNVAGGADNB | MEME-1 | Seq4046 | - | 14 | 23 | 0.000252 | 1 | ACGAGGCGAG |
WNVAGGADNB | MEME-1 | Seq1635 | + | 13 | 22 | 0.000261 | 1 | ACGAGGAGAA |
WNVAGGADNB | MEME-1 | Seq1431 | + | 16 | 25 | 0.000261 | 1 | TCAAGGAGGT |
WNVAGGADNB | MEME-1 | Seq3129 | - | 11 | 20 | 0.000273 | 1 | TCCAGGAAAG |
WNVAGGADNB | MEME-1 | Seq219 | - | 14 | 23 | 0.000273 | 1 | TCGAGGCGTT |
WNVAGGADNB | MEME-1 | Seq983 | - | 14 | 23 | 0.000273 | 1 | TCGAGGCGTT |
WNVAGGADNB | MEME-1 | Seq1458 | + | 10 | 19 | 0.000299 | 1 | ACAAGGCGTT |
WNVAGGADNB | MEME-1 | Seq512 | - | 7 | 16 | 0.000316 | 1 | AGCAGGAGAT |
WNVAGGADNB | MEME-1 | Seq2973 | + | 1 | 10 | 0.000323 | 1 | TGAAGGAGCG |
WNVAGGADNB | MEME-1 | Seq5180 | - | 6 | 15 | 0.000329 | 1 | ACAAGGAAGC |
WNVAGGADNB | MEME-1 | Seq4102 | + | 16 | 25 | 0.000339 | 1 | TCAAGGAAGG |
WNVAGGADNB | MEME-1 | Seq3280 | - | 5 | 14 | 0.000347 | 1 | ATGAGGATTT |
WNVAGGADNB | MEME-1 | Seq2729 | - | 9 | 18 | 0.000347 | 1 | ACCAGGAAGT |
WNVAGGADNB | MEME-1 | Seq4823 | - | 6 | 15 | 0.000362 | 1 | TCGAGGAATA |
WNVAGGADNB | MEME-1 | Seq4481 | + | 12 | 21 | 0.000398 | 1 | TCGAGGCGCT |
WNVAGGADNB | MEME-1 | Seq1659 | - | 8 | 17 | 0.000411 | 1 | AAAAGGAACT |
WNVAGGADNB | MEME-1 | Seq4898 | - | 10 | 19 | 0.000411 | 1 | TTGAGGAGGG |
WNVAGGADNB | MEME-1 | Seq806 | - | 11 | 20 | 0.000411 | 1 | AGAAGGAAGT |
WNVAGGADNB | MEME-1 | Seq3156 | - | 13 | 22 | 0.000411 | 1 | ATGAGGATTG |
WNVAGGADNB | MEME-1 | Seq541 | - | 10 | 19 | 0.00042 | 1 | TCGAGGATCG |
WNVAGGADNB | MEME-1 | Seq1421 | - | 12 | 21 | 0.00042 | 1 | AGGAGGATTG |
WNVAGGADNB | MEME-1 | Seq946 | + | 1 | 10 | 0.000429 | 1 | TGCAGGAATT |
WNVAGGADNB | MEME-1 | Seq3460 | - | 6 | 15 | 0.000444 | 1 | ATCAGGAGTC |
WNVAGGADNB | MEME-1 | Seq3247 | + | 6 | 15 | 0.000456 | 1 | ACAAGGCACT |
WNVAGGADNB | MEME-1 | Seq1170 | + | 10 | 19 | 0.000456 | 1 | TCGAGGAGAA |
WNVAGGADNB | MEME-1 | Seq159 | - | 7 | 16 | 0.000456 | 1 | CCAAGGAAAG |
WNVAGGADNB | MEME-1 | Seq440 | - | 13 | 22 | 0.000474 | 1 | AAAAGGAACG |
WNVAGGADNB | MEME-1 | Seq1149 | + | 13 | 22 | 0.000489 | 1 | ACGAGGCACC |
WNVAGGADNB | MEME-1 | Seq287 | - | 14 | 23 | 0.000497 | 1 | AGGAGGATCT |
WNVAGGADNB | MEME-1 | Seq2378 | + | 16 | 25 | 0.000504 | 1 | TCAAGGCGTT |
WNVAGGADNB | MEME-1 | Seq5063 | + | 10 | 19 | 0.000517 | 1 | ATGAGGCGAT |
WNVAGGADNB | MEME-1 | Seq4662 | - | 5 | 14 | 0.000517 | 1 | ACAAGGATTC |
WNVAGGADNB | MEME-1 | Seq4952 | - | 13 | 22 | 0.000517 | 1 | TTCAGGAGAT |
WNVAGGADNB | MEME-1 | Seq3028 | + | 10 | 19 | 0.000547 | 1 | TTCAGGAAAT |
WNVAGGADNB | MEME-1 | Seq2010 | + | 12 | 21 | 0.000547 | 1 | CCAAGGAATC |
WNVAGGADNB | MEME-1 | Seq924 | - | 8 | 17 | 0.000557 | 1 | TGCAGGAAAT |
WNVAGGADNB | MEME-1 | Seq2220 | - | 14 | 23 | 0.000557 | 1 | CTGAGGAGCG |
WNVAGGADNB | MEME-1 | Seq1563 | - | 14 | 23 | 0.000557 | 1 | AAGAGGAGGG |
WNVAGGADNB | MEME-1 | Seq4284 | + | 5 | 14 | 0.000568 | 1 | AACAGGAATT |
WNVAGGADNB | MEME-1 | Seq745 | + | 11 | 20 | 0.000574 | 1 | TGCAGGAACT |
WNVAGGADNB | MEME-1 | Seq2972 | - | 3 | 12 | 0.000574 | 1 | ACGAGGTGCT |
WNVAGGADNB | MEME-1 | Seq4729 | - | 4 | 13 | 0.000594 | 1 | ATAAGGATTT |
WNVAGGADNB | MEME-1 | Seq4185 | - | 9 | 18 | 0.000594 | 1 | AGGAGGCGAG |
WNVAGGADNB | MEME-1 | Seq2189 | + | 5 | 14 | 0.000609 | 1 | ACGAGGTACT |
WNVAGGADNB | MEME-1 | Seq1711 | + | 10 | 19 | 0.000609 | 1 | ATCAGGAAAC |
WNVAGGADNB | MEME-1 | Seq2216 | - | 5 | 14 | 0.000609 | 1 | AGAAGGATTT |
WNVAGGADNB | MEME-1 | Seq2576 | + | 14 | 23 | 0.000609 | 1 | ACGAGGCGGG |
WNVAGGADNB | MEME-1 | Seq923 | - | 6 | 15 | 0.000609 | 1 | AACAGGAGTG |
WNVAGGADNB | MEME-1 | Seq2613 | - | 7 | 16 | 0.000609 | 1 | AGCAGGAGCC |
WNVAGGADNB | MEME-1 | Seq3288 | - | 14 | 23 | 0.000609 | 1 | ATCAGGAAAC |
WNVAGGADNB | MEME-1 | Seq2337 | - | 7 | 16 | 0.000635 | 1 | ATGAGGACTT |
WNVAGGADNB | MEME-1 | Seq49 | - | 12 | 21 | 0.000653 | 1 | TGAAGGAAGT |
WNVAGGADNB | MEME-1 | Seq3736 | + | 14 | 23 | 0.000665 | 1 | ATAAGGCGTT |
WNVAGGADNB | MEME-1 | Seq4989 | - | 8 | 17 | 0.000665 | 1 | ACGAGGAAGA |
WNVAGGADNB | MEME-1 | Seq3630 | + | 16 | 25 | 0.000691 | 1 | TCAAGGCAAT |
WNVAGGADNB | MEME-1 | Seq4775 | - | 16 | 25 | 0.000691 | 1 | TCGAGGCGAC |
WNVAGGADNB | MEME-1 | Seq3820 | + | 1 | 10 | 0.000703 | 1 | ATGAGGCGTC |
WNVAGGADNB | MEME-1 | Seq2182 | - | 3 | 12 | 0.000703 | 1 | TTCAGGAGTC |
WNVAGGADNB | MEME-1 | Seq1885 | + | 16 | 25 | 0.000703 | 1 | AAAAGGAAAC |
WNVAGGADNB | MEME-1 | Seq4019 | + | 4 | 13 | 0.000717 | 1 | TCAAGGCACT |
WNVAGGADNB | MEME-1 | Seq2841 | + | 7 | 16 | 0.000717 | 1 | TCGAGGACAG |
WNVAGGADNB | MEME-1 | Seq3506 | - | 12 | 21 | 0.000717 | 1 | AACAGGAGCT |
WNVAGGADNB | MEME-1 | Seq4478 | + | 7 | 16 | 0.000732 | 1 | CCCAGGAAAT |
WNVAGGADNB | MEME-1 | Seq840 | - | 4 | 13 | 0.000732 | 1 | AACAGGAAAT |
WNVAGGADNB | MEME-1 | Seq2755 | + | 1 | 10 | 0.00076 | 1 | TGCAGGAATC |
WNVAGGADNB | MEME-1 | Seq4841 | - | 7 | 16 | 0.00076 | 1 | TCGAGGATGT |
WNVAGGADNB | MEME-1 | Seq5079 | - | 14 | 23 | 0.00076 | 1 | TCGAGGATGT |
WNVAGGADNB | MEME-1 | Seq1840 | - | 15 | 24 | 0.00076 | 1 | TCGAGGATGT |
WNVAGGADNB | MEME-1 | Seq4757 | - | 6 | 15 | 0.00077 | 1 | TCAAGGCGCG |
WNVAGGADNB | MEME-1 | Seq185 | + | 12 | 21 | 0.000781 | 1 | TCAAGGCAAG |
WNVAGGADNB | MEME-1 | Seq5105 | + | 16 | 25 | 0.000781 | 1 | TCAAGGCAAG |
WNVAGGADNB | MEME-1 | Seq2022 | - | 8 | 17 | 0.000781 | 1 | AGAAGGAGTA |
WNVAGGADNB | MEME-1 | Seq2164 | - | 11 | 20 | 0.000798 | 1 | CAGAGGAATT |
WNVAGGADNB | MEME-1 | Seq2205 | - | 16 | 25 | 0.000798 | 1 | TTGAGGCGAT |
WNVAGGADNB | MEME-1 | Seq1864 | - | 4 | 13 | 0.000813 | 1 | ACCAGGATCG |
WNVAGGADNB | MEME-1 | Seq539 | - | 5 | 14 | 0.000813 | 1 | AACAGGAGCG |
WNVAGGADNB | MEME-1 | Seq3038 | + | 15 | 24 | 0.000813 | 1 | ACCAGGATCG |
WNVAGGADNB | MEME-1 | Seq4345 | - | 9 | 18 | 0.000813 | 1 | AACAGGAGCG |
WNVAGGADNB | MEME-1 | Seq2529 | + | 3 | 12 | 0.000828 | 1 | AACAGGAAAG |
WNVAGGADNB | MEME-1 | Seq2468 | + | 13 | 22 | 0.000828 | 1 | TTGAGGCGCT |
WNVAGGADNB | MEME-1 | Seq3491 | - | 4 | 13 | 0.000828 | 1 | ACGAGGCTTT |
WNVAGGADNB | MEME-1 | Seq3728 | - | 14 | 23 | 0.000828 | 1 | ACGAGGCTTT |
WNVAGGADNB | MEME-1 | Seq4200 | - | 15 | 24 | 0.000828 | 1 | CCCAGGAAAG |
WNVAGGADNB | MEME-1 | Seq887 | + | 9 | 18 | 0.000844 | 1 | TAAAGGAATC |
WNVAGGADNB | MEME-1 | Seq583 | - | 5 | 14 | 0.000844 | 1 | ACGAGGATGC |
WNVAGGADNB | MEME-1 | Seq2473 | - | 16 | 25 | 0.000844 | 1 | TCGAGGACTC |
WNVAGGADNB | MEME-1 | Seq1597 | - | 11 | 20 | 0.000859 | 1 | AGCAGGAAGG |
WNVAGGADNB | MEME-1 | Seq3861 | - | 13 | 22 | 0.000859 | 1 | CTGAGGAAAC |
WNVAGGADNB | MEME-1 | Seq4137 | - | 13 | 22 | 0.000884 | 1 | AGAAGGCGCT |
WNVAGGADNB | MEME-1 | Seq3244 | - | 9 | 18 | 0.000899 | 1 | TCAAGGACTG |
WNVAGGADNB | MEME-1 | Seq593 | - | 13 | 22 | 0.000899 | 1 | ATAAGGATCG |
WNVAGGADNB | MEME-1 | Seq3979 | - | 13 | 22 | 0.000899 | 1 | TCCAGGCGTT |
WNVAGGADNB | MEME-1 | Seq3869 | - | 16 | 25 | 0.000899 | 1 | TCCAGGCGTT |
WNVAGGADNB | MEME-1 | Seq2086 | + | 10 | 19 | 0.000917 | 1 | AGAAGGATCG |
WNVAGGADNB | MEME-1 | Seq2433 | - | 3 | 12 | 0.000917 | 1 | TGGAGGCGAG |
WNVAGGADNB | MEME-1 | Seq2839 | - | 6 | 15 | 0.000917 | 1 | TCAAGGCATC |
WNVAGGADNB | MEME-1 | Seq1807 | - | 7 | 16 | 0.000917 | 1 | ACCAGGACTT |
WNVAGGADNB | MEME-1 | Seq4830 | - | 8 | 17 | 0.000917 | 1 | TTGAGGAGAA |
WNVAGGADNB | MEME-1 | Seq4674 | - | 8 | 17 | 0.000917 | 1 | ACGAGGCGGC |
WNVAGGADNB | MEME-1 | Seq4705 | - | 2 | 11 | 0.000934 | 1 | TTCAGGAAAC |
WNVAGGADNB | MEME-1 | Seq191 | + | 12 | 21 | 0.000934 | 1 | TCCAGGATTG |
WNVAGGADNB | MEME-1 | Seq5130 | - | 6 | 15 | 0.000934 | 1 | ACGAGGCTTG |
WNVAGGADNB | MEME-1 | Seq1992 | + | 16 | 25 | 0.000953 | 1 | TGCAGGAAAC |
WNVAGGADNB | MEME-1 | Seq1759 | - | 10 | 19 | 0.000953 | 1 | CCAAGGAAGG |
WNVAGGADNB | MEME-1 | Seq760 | - | 11 | 20 | 0.000953 | 1 | ATAAGGCGAG |
WNVAGGADNB | MEME-1 | Seq3724 | - | 16 | 25 | 0.000953 | 1 | ACGAGGACGG |
WNVAGGADNB | MEME-1 | Seq3912 | + | 8 | 17 | 0.000969 | 1 | TTGAGGAAAA |
WNVAGGADNB | MEME-1 | Seq4206 | - | 4 | 13 | 0.000987 | 1 | AAGAGGCATG |
WNVAGGADNB | MEME-1 | Seq1500 | + | 13 | 22 | 0.000987 | 1 | ACAAGGCGGG |
Command line:
fimo --oc fimo_neg -thresh 0.001 ./meme_out/meme.txt NEGATIVE.fasta
Settings:
output_directory = fimo_neg | MEME file name = ./meme_out/meme.txt | sequence file name = NEGATIVE.fasta |
background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = false |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 2 |
This information can be useful in the event you wish to report a problem with the FIMO software.