TBLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= b0215 name description
         (243 letters)

Database: pm 
           204 sequences; 2,269,587 total letters

Searching.done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

embl|AE006046|AE006046 Pasteurella multocida subsp. multocida st...   293   6e-81
embl|AE006138|AE006138 Pasteurella multocida subsp. multocida st...    33   0.011
embl|AE006194|AE006194 Pasteurella multocida subsp. multocida st...    27   1.4  
embl|AE006055|AE006055 Pasteurella multocida subsp. multocida st...    26   1.8  
embl|AE006057|AE006057 Pasteurella multocida subsp. multocida st...    24   8.8  

>embl|AE006046|AE006046 Pasteurella multocida subsp. multocida str.
           Pm70 section 13 of 204 of the complete genome.
          Length = 10484

 Score =  293 bits (750), Expect = 6e-81
 Identities = 151/237 (63%), Positives = 179/237 (75%), Gaps = 1/237 (0%)
 Frame = -1

Query: 6   TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGV 65
           TRQIVLDTETTGMNQ GAHYEGH IIEIGAVE++NRRLTGNNFH+Y+KP+R VDP+A  V
Sbjct: 995 TRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKV 816

Query: 66  HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFC 125
           HGI DE L DKP F EVA +F+DYI+GAEL+IHNA FD+GFMDYEF  L  +I  T+  C
Sbjct: 815 HGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNI-NTDAIC 639

Query: 126 KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 185
            VTD+L +AR+M+PGKRNSLDALC R  IDNSKRTLHGALLDA+ILA+VYL MTGGQTS+
Sbjct: 638 MVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSL 459

Query: 186 AFAMEGETXXXXGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKG-GSCLW 241
               E E      +  IQ  V  +  L+ +    +E+ AH   L L+ KK  G+CLW
Sbjct: 458 FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLW 288


>embl|AE006138|AE006138 Pasteurella multocida subsp. multocida str.
           Pm70 section 105 of 204 of the complete genome.
          Length = 11115

 Score = 33.5 bits (75), Expect = 0.011
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 18/188 (9%)
 Frame = +1

Query: 9   IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRR----LTGNNFHVYLKP--DRLVDPEA 62
           +++D ET G N      +   ++E+ A+ V        +     H +++P     ++PE+
Sbjct: 655 VIIDVETAGFNA-----KTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPES 819

Query: 63  FGVHGIADEFLLDKPTFAEVA-DEFMDYIRGAE---------LVIHNAAFDIGFMDYEFS 112
              +GI     L       VA  E    +R A+         +V HNAAFD  F+    +
Sbjct: 820 LQFNGIDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFL---MA 990

Query: 113 LLKRDIPKTNTF--CKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQI 170
             +R   K N F    + D+  ++  MF   +  L   C   +I    +  H AL D + 
Sbjct: 991 AAERTGVKRNPFHPFGMFDTATLSGFMF--GQTVLVKACQAAQIAFDGKQAHSALYDTER 1164

Query: 171 LAEVYLAM 178
            AE++  M
Sbjct: 1165TAELFCYM 1188


>embl|AE006194|AE006194 Pasteurella multocida subsp. multocida str.
           Pm70 section 161 of 204 of the complete genome.
          Length = 10533

 Score = 26.6 bits (57), Expect = 1.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 18  MNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG 64
           +NQ   + +GH  + IG    +  +  G+ F V +KP+     EA+G
Sbjct: 949 VNQPLEYLQGHNNLVIGLENALEGKAVGDKFEVRVKPE-----EAYG 1074


>embl|AE006055|AE006055 Pasteurella multocida subsp. multocida str.
            Pm70 section 22 of 204 of the complete genome.
          Length = 10811

 Score = 26.2 bits (56), Expect = 1.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 77   PTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTN 122
            P F ++A EF+ +    +     +A  +  MD+E++ L  ++ KTN
Sbjct: 5321 PYFQDIAGEFLTF---CQTQTDFSADILALMDFEYTQLLAEVEKTN 5193


>embl|AE006057|AE006057 Pasteurella multocida subsp. multocida str.
            Pm70 section 24 of 204 of the complete genome.
          Length = 12201

 Score = 23.9 bits (50), Expect = 8.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 43   LTGNNFHVYLKPDRLVDPEAFGVHGIADEFL 73
            L GN FH++L+P +    E    HG   +F+
Sbjct: 4539 LLGNTFHLWLRPGQ----EVMRKHGDLHDFM 4459


  Database: pm
    Posted date:  Sep 29, 2006  7:57 PM
  Number of letters in database: 2,269,587
  Number of sequences in database:  204
  
Lambda     K      H
   0.322    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,262
Number of Sequences: 204
Number of extensions: 5160
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 16
length of query: 243
length of database: 756,529
effective HSP length: 79
effective length of query: 164
effective length of database: 740,413
effective search space: 121427732
effective search space used: 121427732
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)