TBLASTN 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= b0215 name description (243 letters) Database: 3g1 1077 sequences; 12,619,654 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value embl|AE006046|AE006046 Pasteurella multocida subsp. multocida st... 293 3e-80 embl|AE004295|AE004295 Vibrio cholerae O1 biovar eltor str. N169... 293 4e-80 embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 ... 246 4e-66 embl|AE004208|AE004208 Vibrio cholerae O1 biovar eltor str. N169... 40 8e-04 embl|AE004560|AE004560 Pseudomonas aeruginosa PAO1, section 121 ... 38 0.002 embl|AE006138|AE006138 Pasteurella multocida subsp. multocida st... 33 0.057 embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 ... 30 0.83 embl|AE004828|AE004828 Pseudomonas aeruginosa PAO1, section 389 ... 29 1.4 embl|AE004233|AE004233 Vibrio cholerae O1 biovar eltor str. N169... 27 4.1 embl|AE004331|AE004331 Vibrio cholerae O1 biovar eltor str. N169... 27 5.4 embl|AE006194|AE006194 Pasteurella multocida subsp. multocida st... 27 7.0 embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 ... 27 7.0 embl|AE006055|AE006055 Pasteurella multocida subsp. multocida st... 26 9.1 embl|AE004119|AE004119 Vibrio cholerae O1 biovar eltor str. N169... 26 9.1 >embl|AE006046|AE006046 Pasteurella multocida subsp. multocida str. Pm70 section 13 of 204 of the complete genome. Length = 10484 Score = 293 bits (750), Expect = 3e-80 Identities = 151/237 (63%), Positives = 179/237 (75%), Gaps = 1/237 (0%) Frame = -1 Query: 6 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGV 65 TRQIVLDTETTGMNQ GAHYEGH IIEIGAVE++NRRLTGNNFH+Y+KP+R VDP+A V Sbjct: 995 TRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKV 816 Query: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFC 125 HGI DE L DKP F EVA +F+DYI+GAEL+IHNA FD+GFMDYEF L +I T+ C Sbjct: 815 HGITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNI-NTDAIC 639 Query: 126 KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 185 VTD+L +AR+M+PGKRNSLDALC R IDNSKRTLHGALLDA+ILA+VYL MTGGQTS+ Sbjct: 638 MVTDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSL 459 Query: 186 AFAMEGETXXXXGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKG-GSCLW 241 E E + IQ V + L+ + +E+ AH L L+ KK G+CLW Sbjct: 458 FDENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLW 288 >embl|AE004295|AE004295 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 203 of 251 of the complete chromosome. Length = 9973 Score = 293 bits (749), Expect = 4e-80 Identities = 144/238 (60%), Positives = 185/238 (77%), Gaps = 1/238 (0%) Frame = -1 Query: 7 RQIVLDTETTGMNQIGA-HYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGV 65 R +VLDTETTGMN+ G HYEGH+IIEIGAVE++NR+LTG +FHVYLKPDR + EA V Sbjct: 4762 RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEV 4583 Query: 66 HGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFC 125 HGI DEFL DKP + +V +EF+D+I+GAELV HNA FD+GFMDYEF+ L I KT+ FC Sbjct: 4582 HGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFC 4403 Query: 126 KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 185 KVTD+LA+A+++FPGKRN+LD LC RY IDNS RTLHGALLDA+ILA+VYL MTGGQTS+ Sbjct: 4402 KVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 4223 Query: 186 AFAMEGETXXXXGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCLWRA 243 F+ + +++R + L+V+ A+ +E+ AH+ RLD+V K G+CLWR+ Sbjct: 4222 QFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIV-AKSGTCLWRS 4052 >embl|AE004608|AE004608 Pseudomonas aeruginosa PAO1, section 169 of 529 of the complete genome. Length = 13121 Score = 246 bits (628), Expect = 4e-66 Identities = 132/240 (55%), Positives = 170/240 (70%), Gaps = 5/240 (2%) Frame = +3 Query: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66 R +VLDTETTGM +GH+IIEIG VE+ RRLTG +FHVYL+PDR VD A VH Sbjct: 2226 RSVVLDTETTGMPVT----DGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVH 2393 Query: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLL-KRDIPKTNTFC 125 GI +E+L DKP F EVA++F ++IRGA+L+IHNAAFDIGF++ EF+LL ++D +C Sbjct: 2394 GITNEYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC 2573 Query: 126 KVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 185 V D+L +AR+ PG+RN+LDALC RY +DNS R LHGALLDA+ILA+VYLAMTGGQTS+ Sbjct: 2574 SVLDTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSL 2753 Query: 186 AFAMEGETXXXXGE---ATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKK-GGSCLW 241 + A G G + I+R+ V+ A EE+AAH ARL +++K GG LW Sbjct: 2754 SLAGSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLW 2933 >embl|AE004208|AE004208 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 116 of 251 of the complete chromosome. Length = 10254 Score = 39.7 bits (91), Expect = 8e-04 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 12/181 (6%) Frame = -2 Query: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYL-KPDRLVDPEAFGVHG 67 + LD ETTG+N E I+ IG V +R+ + +L KP + ++ E+ HG Sbjct: 8066 VALDFETTGLNA-----EQDAIVSIGLVPFTTQRIFLSQARYWLVKPSQPLEDESIVFHG 7902 Query: 68 IADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKV 127 I L +V E ++ + G +V+H + F+ + +I V Sbjct: 7901 ITHSELQHAQAPEQVLKELLEALHGKIVVVHFRHIERDFL----RQISLNIWGEAIEFPV 7734 Query: 128 TDSLAVARKMFPGKRNSLDALCAR----YEIDNSKR-------TLHGALLDAQILAEVYL 176 D+L + R++ +R+ + R + S+ + H AL DA AE++ Sbjct: 7733 LDTLEIERQLLDKQRSLWQRIARRPLPSIRLGQSRMRYHLPPYSPHHALTDAIATAELFQ 7554 Query: 177 A 177 A Sbjct: 7553 A 7551 >embl|AE004560|AE004560 Pseudomonas aeruginosa PAO1, section 121 of 529 of the complete genome. Length = 11168 Score = 38.1 bits (87), Expect = 0.002 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = +2 Query: 141 KRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETXXXXG 198 + ++LDAL AR+ D S T HG +LD L E++ + G + + ++GE+ G Sbjct: 10124 RADALDALMARFAEDFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASG 10297 >embl|AE006138|AE006138 Pasteurella multocida subsp. multocida str. Pm70 section 105 of 204 of the complete genome. Length = 11115 Score = 33.5 bits (75), Expect = 0.057 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 18/188 (9%) Frame = +1 Query: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRR----LTGNNFHVYLKP--DRLVDPEA 62 +++D ET G N + ++E+ A+ V + H +++P ++PE+ Sbjct: 655 VIIDVETAGFNA-----KTDALLELAAITVKMNEDGLLVPDQTCHFHIEPFAGANINPES 819 Query: 63 FGVHGIADEFLLDKPTFAEVA-DEFMDYIRGAE---------LVIHNAAFDIGFMDYEFS 112 +GI L VA E +R A+ +V HNAAFD F+ + Sbjct: 820 LQFNGIDIHNPLRGAVSETVAITELFKMVRKAQKAADCQRSIIVAHNAAFDQSFL---MA 990 Query: 113 LLKRDIPKTNTF--CKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQI 170 +R K N F + D+ ++ MF + L C +I + H AL D + Sbjct: 991 AAERTGVKRNPFHPFGMFDTATLSGFMF--GQTVLVKACQAAQIAFDGKQAHSALYDTER 1164 Query: 171 LAEVYLAM 178 AE++ M Sbjct: 1165TAELFCYM 1188 >embl|AE004773|AE004773 Pseudomonas aeruginosa PAO1, section 334 of 529 of the complete genome. Length = 10822 Score = 29.6 bits (65), Expect = 0.83 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 24/208 (11%) Frame = +3 Query: 9 IVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRL----VDP-EAF 63 +V+D ET G N ++EI A V G + +L P+ ++P E Sbjct: 4266 VVVDVETGGFNSAT-----DALLEIAATTV------GMDEKGFLFPEHTYFFRIEPFEGA 4412 Query: 64 GVHGIADEFL---LDKPTFAEVADE--FMDYIRG------------AELVIHNAAFDIGF 106 + A EF LD P V +E + RG A LV HN++FD+GF Sbjct: 4413 NIEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGF 4592 Query: 107 MDYEFSLLKRDIPKTNTFCKVT--DSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGA 164 ++ + + R K N F + D+ +A + + A E DN R H A Sbjct: 4593 LN---AAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDN--REAHSA 4757 Query: 165 LLDAQILAEVYLAMTGGQTSMAFAMEGE 192 D + AE++ + M M+ + Sbjct: 4758 RYDTEKTAELFCGIVNRWKEMGGWMDDD 4841 >embl|AE004828|AE004828 Pseudomonas aeruginosa PAO1, section 389 of 529 of the complete genome. Length = 12433 Score = 28.9 bits (63), Expect = 1.4 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 31 IEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG 64 +E+G E +RRL V+L P RL DP G Sbjct: 11651 LEVGVFEDQHRRLAAQFHRVFLDPGRLHDPSPGG 11550 >embl|AE004233|AE004233 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 141 of 251 of the complete chromosome. Length = 14482 Score = 27.3 bits (59), Expect = 4.1 Identities = 11/44 (25%), Positives = 25/44 (56%) Frame = -1 Query: 180 GGQTSMAFAMEGETXXXXGEATIQRIVRQASKLRVVFATDEEIA 223 G + S + +EG+ G +Q++++Q + VFA ++++A Sbjct: 7444 GIELSSSLVIEGDNTLLGGYQAMQQLLQQGISMTAVFACNDDMA 7313 >embl|AE004331|AE004331 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 239 of 251 of the complete chromosome. Length = 13083 Score = 26.9 bits (58), Expect = 5.4 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +1 Query: 124 FCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSK---RTLHGALLDAQILAEV 174 FCK ++ V+ K PGK + L +R I ++ RT+ L +I +EV Sbjct: 6769 FCKSVSTIRVSGKAIPGKNSWLARSASRRAICSASCPHRTIFAPLRAKEIASEV 6930 >embl|AE006194|AE006194 Pasteurella multocida subsp. multocida str. Pm70 section 161 of 204 of the complete genome. Length = 10533 Score = 26.6 bits (57), Expect = 7.0 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +1 Query: 18 MNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFG 64 +NQ + +GH + IG + + G+ F V +KP+ EA+G Sbjct: 949 VNQPLEYLQGHNNLVIGLENALEGKAVGDKFEVRVKPE-----EAYG 1074 >embl|AE004784|AE004784 Pseudomonas aeruginosa PAO1, section 345 of 529 of the complete genome. Length = 12469 Score = 26.6 bits (57), Expect = 7.0 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%) Frame = -3 Query: 147 ALCARYEI------DNSKRTLHGALLDAQILAEVY 175 ALC R+ I D+ KR L ALL A ++AEV+ Sbjct: 12452 ALCGRFSICQLEKKDSMKRFLLPALLSALMIAEVH 12348 >embl|AE006055|AE006055 Pasteurella multocida subsp. multocida str. Pm70 section 22 of 204 of the complete genome. Length = 10811 Score = 26.2 bits (56), Expect = 9.1 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = -1 Query: 77 PTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTN 122 P F ++A EF+ + + +A + MD+E++ L ++ KTN Sbjct: 5321 PYFQDIAGEFLTF---CQTQTDFSADILALMDFEYTQLLAEVEKTN 5193 >embl|AE004119|AE004119 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 27 of 251 of the complete chromosome. Length = 11487 Score = 26.2 bits (56), Expect = 9.1 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +2 Query: 69 ADEFLLDKPTFAEVADEFMDYIRGAEL-VIHNAAFDIGFM 107 A EFL+DK + DEF D +R L VI N + F+ Sbjct: 1793 AMEFLIDKLAMTKTNDEFFDAMRRQ*LNVISNTTLAVVFL 1912 Database: 3g1 Posted date: Oct 4, 2006 2:50 AM Number of letters in database: 12,619,654 Number of sequences in database: 1077 Lambda K H 0.322 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,836,509 Number of Sequences: 1077 Number of extensions: 33717 Number of successful extensions: 174 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 99 Number of HSP's gapped (non-prelim): 84 length of query: 243 length of database: 4,206,551 effective HSP length: 91 effective length of query: 152 effective length of database: 4,108,544 effective search space: 624498688 effective search space used: 624498688 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.2 bits)