BLASTN 2.12.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: S_cerevisiae_genome.fasta 17 sequences; 12,157,105 total letters Query= CP014225.1:2234710-2237641|23S_rRNA|Escherichia coli str. K-12 substr. MG1655 strain K-12 Length=2932 Score E Sequences producing significant alignments: (Bits) Value NC_001224.1 Saccharomyces cerevisiae S288c mitochondrion, complet... 109 4e-23 NC_001144.5 Saccharomyces cerevisiae S288C chromosome XII, comple... 74.3 3e-12 NC_001148.4 Saccharomyces cerevisiae S288C chromosome XVI, comple... 37.4 0.20 NC_001136.10 Saccharomyces cerevisiae S288C chromosome IV, comple... 32.8 8.6 NC_001145.3 Saccharomyces cerevisiae S288C chromosome XIII, compl... 31.9 8.6 NC_001138.5 Saccharomyces cerevisiae S288C chromosome VI, complet... 31.9 8.6 NC_001134.8 Saccharomyces cerevisiae S288C chromosome II, complet... 31.9 8.6 >NC_001224.1 Saccharomyces cerevisiae S288c mitochondrion, complete genome Length=85779 Score = 109 bits (120), Expect = 4e-23 Identities = 137/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 1906 GGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGT 1965 |||||| || ||| || ||| | ||| ||| |||||||||||||||| | ||| | Sbjct 59805 GGTAAATAGCAGCCTTAT-TATGAGGGTTATAATGTAGCGAAATTCCTTGGCCTATAATT 59863 Query 1966 TCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAA 2025 | || ||| ||||| ||||||||| |||||||| | | || ||||||| Sbjct 59864 GAGGTCCCGCATGAATGACGTAATGATACAACAACTGTCTCCCCTTTAAGCTAAGTGAAA 59923 Query 2026 TTGAACTCGCTGTGAAGATGCAGTGTACCCGCGGCAAGACGGAAAGACCCCGTGAACCTT 2085 ||||| ||| |||||||||| |||||| | ||||||||||||||||| || | ||| Sbjct 59924 TTGAAATCGTAGTGAAGATGCTATGTACCTTCAGCAAGACGGAAAGACCCTATGCAGCTT 59983 Query 2086 TACTATA 2092 |||| || Sbjct 59984 TACTGTA 59990 Score = 89.7 bits (98), Expect = 4e-17 Identities = 123/171 (72%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 2460 AACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGTTTGGCACCTCGATGTCGG 2519 |||||| | ||| || |||||| |||| | || |||||| ||||||||||||| Sbjct 61867 AACAGGGTAATATAGCGAAAGAGTAGATATTGTAAGCTATGTTTGCCACCTCGATGTCGA 61926 Query 2520 CTCATCACATCCT-GGGGCTGAAGTAGGTCCCAAGGGTATGGCTGTTCGCCATTTAAAGT 2578 |||| || |||| || || | || | |||||| || ||||||| || ||||| | Sbjct 61927 CTCAACATTTCCTCTTGGTTGTAAAAGCTAAGAAGGGTTTGACTGTTCGTCAATTAAAAT 61986 Query 2579 GGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCCCTATCTGC 2629 | |||| ||| |||||| | ||| |||| |||| ||| ||||||||| Sbjct 61987 GTTACGTGAGTTGGGTTAAATACGATGTGAATCAGTATGGTTCCTATCTGC 62037 Score = 57.2 bits (62), Expect = 2e-07 Identities = 40/46 (87%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 198 GAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGAT 243 ||||||||||||||||||| | |||| ||||||||||| ||||| Sbjct 58237 GAACTGAAACATCTAAGTAACTTAAGGATAAGAAATCAACAGAGAT 58282 Score = 44.6 bits (48), Expect = 0.001 Identities = 24/24 (100%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 570 GTACCTTTTGTATAATGGGTCAGC 593 |||||||||||||||||||||||| Sbjct 58468 GTACCTTTTGTATAATGGGTCAGC 58491 Score = 43.7 bits (47), Expect = 0.005 Identities = 76/111 (68%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 738 GACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCA 797 || ||||| | | |||||| || || | | ||| | |||||| | | ||||||| | | Sbjct 58628 GATCGAACAGGTTGATGTTGCAATATCATCTGATTAATTGTGGTTAGTAGTGAAAGACAA 58687 Query 798 ATCAAACCGGGAGATAGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCT 848 ||| | |||||||||||| || |||| ||| || ||| |||| Sbjct 58688 ATCTGGTTTGCAGATAGCTGGTTTTCTATGAAATATATGTAAGTATAGCCT 58738 Score = 37.4 bits (40), Expect = 0.20 Identities = 23/25 (92%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 1260 GAATGCTGACATAAGTAACGATAAA 1284 |||||||||||| |||||||| ||| Sbjct 59293 GAATGCTGACATGAGTAACGAAAAA 59317 >NC_001144.5 Saccharomyces cerevisiae S288C chromosome XII, complete sequence Length=1078177 Score = 74.3 bits (81), Expect = 3e-12 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | | |||| ||||||| |||| | | | Sbjct 452381 AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGTCAAGCGTTCATAGCGACATTGCTTT 452322 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCT---GGGGCTGAAGTAGGTCCCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | || ||| | ||| ||| || Sbjct 452321 TTGATTCTTCGATGTCGGCTCTTCCTATCATACCGAAGCAGAATTCGGT---AAGCGTTG 452265 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 452264 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 452210 Score = 74.3 bits (81), Expect = 3e-12 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | | |||| ||||||| |||| | | | Sbjct 461518 AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGTCAAGCGTTCATAGCGACATTGCTTT 461459 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCT---GGGGCTGAAGTAGGTCCCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | || ||| | ||| ||| || Sbjct 461458 TTGATTCTTCGATGTCGGCTCTTCCTATCATACCGAAGCAGAATTCGGT---AAGCGTTG 461402 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 461401 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 461347 Score = 74.3 bits (81), Expect = 3e-12 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 2442 AAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGTGT 2501 ||||| ||| | |||||||| |||| | | |||| ||||||| |||| | | | Sbjct 490349 AAAAGTTACCACAGGGATAACTGGCTTGTGGCAGTCAAGCGTTCATAGCGACATTGCTTT 490290 Query 2502 TTGGCACCTCGATGTCGGCTCATCACATCCT---GGGGCTGAAGTAGGTCCCAAGGGTAT 2558 ||| | ||||||||||||| || ||| | | || ||| | ||| ||| || Sbjct 490289 TTGATTCTTCGATGTCGGCTCTTCCTATCATACCGAAGCAGAATTCGGT---AAGCGTTG 490233 Query 2559 GGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACGTCGTGAGACAG 2613 | ||||| || ||| || ||| |||||||||||||| ||||||||||||| Sbjct 490232 GATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG 490178 Score = 64.4 bits (70), Expect = 1e-09 Identities = 73/97 (75%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 428 TCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAA 487 || || |||||||| | || ||||||||| |||| ||||| |||| |||||| ||| Sbjct 454868 TCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAA 454809 Query 488 AAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAA 524 |||||| | || | |||||||||| || ||||| Sbjct 454808 AAGAACTTTGAAAAGAG-AGTGAAAAAGTACGTGAAA 454773 Score = 64.4 bits (70), Expect = 1e-09 Identities = 73/97 (75%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 428 TCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAA 487 || || |||||||| | || ||||||||| |||| ||||| |||| |||||| ||| Sbjct 464005 TCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAA 463946 Query 488 AAGAACCCCGGCGAGGGGAGTGAAAAAGAACCTGAAA 524 |||||| | || | |||||||||| || ||||| Sbjct 463945 AAGAACTTTGAAAAGAG-AGTGAAAAAGTACGTGAAA 463910 Score = 60.8 bits (66), Expect = 2e-08 Identities = 69/93 (74%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1899 AAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG 1958 |||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 452950 AAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCA 452891 Query 1959 GGTAAGTTCCGACCTGCACGAATGGCGTAATGA 1991 ||| | ||| ||| |||||| ||| || Sbjct 452890 TCTAATTAGTGACGCGCATGAATGGATTAACGA 452858 Score = 60.8 bits (66), Expect = 2e-08 Identities = 69/93 (74%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1899 AAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCG 1958 |||| | |||||||||||| |||||||| || || ||||||||| |||| ||| ||| Sbjct 462087 AAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCA 462028 Query 1959 GGTAAGTTCCGACCTGCACGAATGGCGTAATGA 1991 ||| | ||| ||| |||||| ||| || Sbjct 462027 TCTAATTAGTGACGCGCATGAATGGATTAACGA 461995 Score = 57.2 bits (62), Expect = 2e-07 Identities = 61/81 (75%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 185 AGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATT 244 ||| | ||| | ||||| || ||| | | || | |||||||||||| |||||| |||| Sbjct 455162 AGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACCGGGATT 455103 Query 245 CCCCCAGTAGCGGCGAGCGAA 265 || |||| ||||||| ||| Sbjct 455102 GCCTTAGTAACGGCGAGTGAA 455082 Score = 57.2 bits (62), Expect = 2e-07 Identities = 61/81 (75%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 185 AGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATT 244 ||| | ||| | ||||| || ||| | | || | |||||||||||| |||||| |||| Sbjct 464299 AGGAGTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACCGGGATT 464240 Query 245 CCCCCAGTAGCGGCGAGCGAA 265 || |||| ||||||| ||| Sbjct 464239 GCCTTAGTAACGGCGAGTGAA 464219 Score = 42.8 bits (46), Expect = 0.005 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 1674 GGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGG 1711 |||| | |||||||| | |||||||||||||| |||| Sbjct 453284 GGAAGTCGGCAAAATAGATCCGTAACTTCGGGATAAGG 453247 Score = 42.8 bits (46), Expect = 0.005 Identities = 32/38 (84%), Gaps = 0/38 (0%) Strand=Plus/Minus Query 1674 GGAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAAGG 1711 |||| | |||||||| | |||||||||||||| |||| Sbjct 462421 GGAAGTCGGCAAAATAGATCCGTAACTTCGGGATAAGG 462384 Score = 34.6 bits (37), Expect = 2.4 Identities = 33/40 (83%), Gaps = 2/40 (5%) Strand=Plus/Plus Query 1766 TACCAG-CTGGCTGCAACTGTTTAT-TAAAAACACAGCAC 1803 |||||| |||||||||| || |||| |||||| | || || Sbjct 1025543 TACCAGGCTGGCTGCAAATGGTTATATAAAAAAAAAGAAC 1025582 Score = 31.9 bits (34), Expect = 8.6 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 2712 GCCAATGGCACTGCCCG 2728 ||||||||||||||||| Sbjct 387741 GCCAATGGCACTGCCCG 387757 >NC_001148.4 Saccharomyces cerevisiae S288C chromosome XVI, complete sequence Length=948066 Score = 37.4 bits (40), Expect = 0.20 Identities = 20/20 (100%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 2164 ATGGAGCCGACCTTGAAATA 2183 |||||||||||||||||||| Sbjct 343058 ATGGAGCCGACCTTGAAATA 343039 Score = 32.8 bits (35), Expect = 8.6 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Minus Query 2331 TAGTGCAATGGCATAAGCCAGCTTG 2355 |||||||||||||||| || |||| Sbjct 390552 TAGTGCAATGGCATAATCCCTCTTG 390528 >NC_001136.10 Saccharomyces cerevisiae S288C chromosome IV, complete sequence Length=1531933 Score = 32.8 bits (35), Expect = 8.6 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Minus Query 1079 AGCAGCCATCATTTAAAGAA 1098 |||||||| ||||||||||| Sbjct 1387056 AGCAGCCACCATTTAAAGAA 1387037 >NC_001145.3 Saccharomyces cerevisiae S288C chromosome XIII, complete sequence Length=924431 Score = 31.9 bits (34), Expect = 8.6 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 1214 GCCTGTGAAGGTGTGCT 1230 ||||||||||||||||| Sbjct 628450 GCCTGTGAAGGTGTGCT 628466 >NC_001138.5 Saccharomyces cerevisiae S288C chromosome VI, complete sequence Length=270161 Score = 31.9 bits (34), Expect = 8.6 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1928 AACGGTCCTAAGGTAGCGAAAT 1949 ||||||||||||||| | |||| Sbjct 255326 AACGGTCCTAAGGTACCAAAAT 255347 >NC_001134.8 Saccharomyces cerevisiae S288C chromosome II, complete sequence Length=813184 Score = 31.9 bits (34), Expect = 8.6 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 311 CGTCTGGAAAGGCGTGC 327 ||||||||||||||||| Sbjct 111128 CGTCTGGAAAGGCGTGC 111144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35315056630 Database: S_cerevisiae_genome.fasta Posted date: Mar 17, 2026 7:25 PM Number of letters in database: 12,157,105 Number of sequences in database: 17 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2