**************************************************************************** RMSD of the bases (----- for WC bp, + for isolated bp, x for helix change) Strand I Strand II Helix 1 (0.004) ...1>C:.501_:[..G]G-----C[..C]:.572_:C<...1 (0.005) | 2 (0.007) ...1>C:.502_:[..G]G-*---U[..U]:.571_:C<...1 (0.008) | 3 (0.003) ...1>C:.503_:[..C]C-----G[..G]:.570_:C<...1 (0.003) | 4 (0.003) ...1>C:.504_:[..C]C-----G[..G]:.569_:C<...1 (0.007) | 5 (0.005) ...1>C:.505_:[..C]C-----G[..G]:.568_:C<...1 (0.009) | 6 (0.005) ...1>C:.506_:[..C]C-----G[..G]:.567_:C<...1 (0.003) | 7 (0.004) ...1>C:.507_:[..A]A-----U[..U]:.566_:C<...1 (0.006) | 8 (0.004) ...1>C:.549_:[..G]G-----C[..C]:.565_:C<...1 (0.002) | 9 (0.001) ...1>C:.550_:[..G]G-----C[..C]:.564_:C<...1 (0.003) | 10 (0.007) ...1>C:.551_:[..G]G-----C[..C]:.563_:C<...1 (0.002) | 11 (0.003) ...1>C:.552_:[..G]G-----C[..C]:.562_:C<...1 (0.003) | 12 (0.005) ...1>C:.553_:[..G]G-----C[..C]:.561_:C<...1 (0.004) | 13 (0.003) ...1>C:.554_:[..U]U-**--A[..A]:.558_:C<...1 (0.008) | 14 (0.003) ...1>C:.555_:[..U]U-**+-G[..G]:.518_:C<...1 (0.003) x 15 (0.003) ...1>C:.538_:[..A]A-**--C[..C]:.532_:C<...1 (0.005) | 16 (0.005) ...1>C:.539_:[..G]G-----C[..C]:.531_:C<...1 (0.004) | 17 (0.003) ...1>C:.540_:[..G]G-----C[..C]:.530_:C<...1 (0.004) | 18 (0.005) ...1>C:.541_:[..C]C-----G[..G]:.529_:C<...1 (0.005) | 19 (0.004) ...1>C:.542_:[..C]C-----G[..G]:.528_:C<...1 (0.005) | 20 (0.006) ...1>C:.543_:[..G]G-----C[..C]:.527_:C<...1 (0.003) | 21 (0.005) ...1>C:.544_:[..A]A-**--G[..G]:.526_:C<...1 (0.004) | 22 (0.006) ...1>C:.510_:[..G]G-----C[..C]:.525_:C<...1 (0.004) | 23 (0.004) ...1>C:.511_:[..U]U-----A[..A]:.524_:C<...1 (0.003) | 24 (0.002) ...1>C:.512_:[..C]C-----G[..G]:.523_:C<...1 (0.011) | 25 (0.004) ...1>C:.513_:[..U]U-*---G[..G]:.522_:C<...1 (0.007) | 26 (0.004) ...1>C:.508_:[..U]U-**--A[..A]:.546_:C<...1 (0.003) | 27 (0.007) ...1>C:.514_:[..A]A-**--A[..A]:.521_:C<...1 (0.005) | 28 (0.018) ...1>C:.515_:[..G]G-**+-C[..C]:.548_:C<...1 (0.012) x 29 (0.004) ...1>C:.519_:[..G]G-----C[..C]:.556_:C<...1 (0.002) + Note: This structure contains 9[7] non-Watson-Crick base-pairs. **************************************************************************** Detailed H-bond information: atom-name pair and length [ O N] 1 G-----C [3] O6 - N4 2.66 N1 - N3 2.78 N2 - O2 2.92 2 G-*---U [2] O6 - N3 2.88 N1 - O2 2.77 3 C-----G [3] O2 - N2 2.87 N3 - N1 2.90 N4 - O6 2.85 4 C-----G [3] O2 - N2 2.67 N3 - N1 2.97 N4 - O6 3.17 5 C-----G [3] O2 - N2 2.92 N3 - N1 2.89 N4 - O6 2.74 6 C-----G [3] O2 - N2 2.62 N3 - N1 2.78 N4 - O6 2.84 7 A-----U [2] N6 - O4 2.73 N1 - N3 2.89 8 G-----C [3] O6 - N4 3.14 N1 - N3 3.02 N2 - O2 2.81 9 G-----C [3] O6 - N4 2.71 N1 - N3 2.87 N2 - O2 2.90 10 G-----C [3] O6 - N4 3.13 N1 - N3 2.87 N2 - O2 2.48 11 G-----C [3] O6 - N4 2.84 N1 - N3 2.80 N2 - O2 2.61 12 G-----C [3] O6 - N4 2.64 N1 - N3 2.84 N2 - O2 2.93 13 U-**--A [2] O2 - N6 3.17 N3 - N7 3.19 14 U-**+-G [1] O2 - N1 2.68 15 A-**--C [1] N6 - O2 2.98 16 G-----C [3] O6 - N4 3.11 N1 - N3 2.87 N2 - O2 2.63 17 G-----C [3] O6 - N4 3.27 N1 - N3 2.99 N2 - O2 2.63 18 C-----G [3] O2 - N2 2.43 N3 - N1 2.65 N4 - O6 2.79 19 C-----G [3] O2 - N2 2.63 N3 - N1 2.78 N4 - O6 2.86 20 G-----C [3] O6 - N4 3.03 N1 - N3 2.84 N2 - O2 2.71 21 A-**--G [2] N6 - O6 3.04 N1 - N1 2.88 22 G-----C [3] O6 - N4 2.77 N1 - N3 2.83 N2 - O2 2.77 23 U-----A [2] N3 - N1 2.72 O4 - N6 3.10 24 C-----G [3] O2 - N2 2.77 N3 - N1 2.86 N4 - O6 2.84 25 U-*---G [2] O2 - N1 2.66 N3 - O6 3.02 26 U-**--A [2] O2'- O2' 2.83 O2 * N1 3.50 27 A-**--A [2] N6 - N3 2.96 N1 - O2' 2.72 28 G-**+-C [2] N1 - O2 3.07 N2 - N3 2.91 29 G-----C [3] O6 - N4 3.10 N1 - N3 2.86 N2 - O2 2.93 ****************************************************************************