TBLASTN 2.8.1+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: X5.fasta 1,868 sequences; 23,962,143 total letters Query= AAS86840.1 DNA-dependent RNA polymerase II, partial [Ascobolus denudatus] Length=520 Score E Sequences producing significant alignments: (Bits) Value scaffold-463 559 2e-179 scaffold-359 551 2e-176 scaffold-693 230 2e-65 scaffold-223 229 5e-65 scaffold-300 142 6e-36 scaffold-157 135 2e-33 scaffold-527 83.6 3e-19 > scaffold-463 Length=442349 Score = 559 bits (1440), Expect = 2e-179, Method: Compositional matrix adjust. Identities = 278/519 (54%), Positives = 359/519 (69%), Gaps = 30/519 (6%) Frame = +1 Query 2 PIVEFMSQRNMEALEEYEPTRSPNATKIFVNGVWVGVHRDPAQLVSTVQSLRRTGVISPE 61 P++EF+ + ME L + P+ ATK+FVNGVWVG+HRDP L ++ LRR+ +S E Sbjct 277108 PVLEFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAENLKQLRRSLDLSQE 277287 Query 62 ISLVRDIRDREFKIFTDAGRVCRPLYVVETTDDNGRQGELALQKHHIekleddkelplee 121 +S+VRD RDRE +++TD+GRVCRPL++V + G L L K+H+ LE Sbjct 277288 VSIVRDYRDRELRLYTDSGRVCRPLFIV-------KDGALVLTKNHVRLLEKK------- 277425 Query 122 RYGWDGLLRDGVVEYIDAEEEETVMITMSPEDLEISRQVQAGYHVEAEQDLAKRIKASSS 181 GW+ LL DGVVEYID EEEET +I+M+PEDL + +++A + + DL K Sbjct 277426 EIGWNQLLADGVVEYIDTEEEETALISMTPEDL-VESKMRA---MNGQPDLKK------- 277572 Query 182 MNTHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTXXXXXXXXXXXXXXXXXXXXXXXX 241 WTHCE+HPS++ GV AS IPFPDHNQSPRN Sbjct 277573 -----WTHCELHPSLMFGVSASTIPFPDHNQSPRNCYSASQSK*TIGVYLTNF*QRMDTL 277737 Query 242 ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFR 301 +++L+YPQKPL TTR+ME+L +RELPAG NAIVAIA + GYNQEDS++M+ S+IDRGLFR Sbjct 277738 SSVLFYPQKPLVTTRAMEHLHYRELPAG*NAIVAIACHGGYNQEDSILMS*SAIDRGLFR 277917 Query 302 SLFYRAYLDQEKRVGMSVVEEFEKPHRSETLRLKHGTYDKLDEDGLVAPGVRISGEDIII 361 S F+R Y +Q K+VG +EE EKP+ +TL + Y+KLD DGLV PG R+SG+DI++ Sbjct 277918 SFFFRTYTEQVKKVGALELEEIEKPNPRDTLIRRGNNYEKLDADGLVPPGTRVSGDDILV 278097 Query 362 GKTAPIAPDSEELGQRTKYHTKRDVSTPLRSTENGIVDKVMLTTNASGLKFVKVRMRTTK 421 GKT PI DSEELGQRT H KRD S +RSTE G+VD+V+LTTN LK K R+R+ K Sbjct 278098 GKTVPIPVDSEELGQRTARHVKRDSSATMRSTEYGVVDQVLLTTNDLDLKMCKTRVRSVK 278277 Query 422 IPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIECQLS 481 IP +GDK SRHG KG +G+ YR ED+P+T +G+VPD+IINPHAIPSRMTI HLIEC LS Sbjct 278278 IP*VGDKHCSRHG*KGVLGMLYR*EDLPYTADGIVPDVIINPHAIPSRMTIGHLIECLLS 278457 Query 482 KVASLRGFEGDATPFTEVTVDSVSSLLRDAGYQSRGFEI 520 KV++L G EGD TPFT+VTV+ +S+ L GYQ RGFE+ Sbjct 278458 KVSALTGDEGDGTPFTDVTVEDISNALAKCGYQKRGFEV 278574 > scaffold-359 Length=583372 Score = 551 bits (1419), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 276/519 (53%), Positives = 357/519 (69%), Gaps = 30/519 (6%) Frame = -3 Query 2 PIVEFMSQRNMEALEEYEPTRSPNATKIFVNGVWVGVHRDPAQLVSTVQSLRRTGVISPE 61 P++EF+ + ME L + P+ ATK+FVNGVWVG+HRDP L ++ LRR+ +S E Sbjct 295421 PVLEFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAENLK*LRRSLDLSQE 295242 Query 62 ISLVRDIRDREFKIFTDAGRVCRPLYVVETTDDNGRQGELALQKHHIekleddkelplee 121 +S+VRD RDRE +++TD+GRVCRPL++V + G L L K+H+ LE Sbjct 295241 VSIVRDYRDRELRLYTDSGRVCRPLFIV-------KDGALVLTKNHVSLLEKK------- 295104 Query 122 RYGWDGLLRDGVVEYIDAEEEETVMITMSPEDLEISRQVQAGYHVEAEQDLAKRIKASSS 181 GW+ LL DGVVEYID EEEET +I+M+PEDL + +++A + + DL K Sbjct 295103 EIGWNQLLADGVVEYIDTEEEETALISMTPEDL-VESKMRA---MNGQPDLKK------- 294957 Query 182 MNTHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTXXXXXXXXXXXXXXXXXXXXXXXX 241 WTHCE+HPS++ GV AS IPFPDHNQSPRN Sbjct 294956 -----WTHCELHPSLMFGVSASTIPFPDHNQSPRNCYSASQSK*TIGVYLTNFQQRMDTL 294792 Query 242 ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFR 301 +++L+YP KPL TTR+ME+L +RELPAG NAIVAIA + GYNQEDS++M+ S+IDRGLFR Sbjct 294791 SSVLFYP*KPLVTTRAMEHLHYRELPAG*NAIVAIACHGGYNQEDSILMS*SAIDRGLFR 294612 Query 302 SLFYRAYLDQEKRVGMSVVEEFEKPHRSETLRLKHGTYDKLDEDGLVAPGVRISGEDIII 361 S F+R Y + K+VG +EE EKP+ +TL + Y+KLD DGLV PG R+SG+DI++ Sbjct 294611 SFFFRTYTE*VKKVGALELEEIEKPNPRDTLIRRGNNYEKLDADGLVPPGTRVSGDDILV 294432 Query 362 GKTAPIAPDSEELGQRTKYHTKRDVSTPLRSTENGIVDKVMLTTNASGLKFVKVRMRTTK 421 GKT PI DSEELGQRT H KRD S +RSTE G+VD+V+LTTN LK K R+R+ K Sbjct 294431 GKTVPIPVDSEELGQRTARHVKRDSSATMRSTEYGVVDQVLLTTNDLDLKMSKTRVRSVK 294252 Query 422 IPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIECQLS 481 IP +GDK SRHG KG +G+ YR ED+P+T +G+VPD+IINPHAIPSRMTI HLIEC LS Sbjct 294251 IP*VGDKHCSRHG*KGVLGMLYR*EDLPYTADGIVPDVIINPHAIPSRMTIGHLIECLLS 294072 Query 482 KVASLRGFEGDATPFTEVTVDSVSSLLRDAGYQSRGFEI 520 KV++L G EGD TPFT+VTV+ +S+ L GYQ RGFE+ Sbjct 294071 KVSALTGDEGDGTPFTDVTVEDISNALAKCGYQKRGFEV 293955 > scaffold-693 Length=1268102 Score = 230 bits (586), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 147/508 (29%), Positives = 243/508 (48%), Gaps = 44/508 (9%) Frame = +2 Query 12 MEALEEYEPTRSPNATKIFVNGVWVGVHRDPAQLVSTVQSLRRTGVISPEISLVRDIRDR 71 + LE + P +FVNG +G+H P L + ++++RR G I+ +S+ + + Sbjct 878063 LNGLEIHAPVNGHQPFMVFVNGTLIGIHVRPDILAAKLRTMRRNGKINEFVSISLNPN*K 878242 Query 72 EFKIFTDAGRVCRPLYVVETTDDNGRQGELALQKHHIekleddkelpleeRYGWDGLLRD 131 I D GR+CRPL +V+ ++G+ ++ H+++L K + + L+D Sbjct 878243 SVHISADGGRICRPLIIVD------KKGQPLVKDKHMKELTSGKRV-------F*DFLKD 878383 Query 132 GVVEYIDAEEEETVMITMSPEDLEISRQVQAGYHVEAEQDLAKRIKASSSMNTHTWTHCE 191 G+VEY+D EE +I M ++ + E TH E Sbjct 878384 GLVEYLDVNEENDSLIAMYESEI-----------IPGET-----------------THVE 878479 Query 192 IHPSMILGVCASIIPFPDHNQSPRNTXXXXXXXXXXXXXXXXXXXXXXXXANILYYPQKP 251 I P +LG A IIP+P H+ R T L YPQ+P Sbjct 878480 IEPFTLLGAVAGIIPYPHHD*CARITFTCAMAK*SQSILAYNQFARIDTLL*ALVYPQQP 878659 Query 252 LATTRSMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYLDQ 311 + T+++E + + +LPAG NAIVAI YSGY+ ED++I+++SS+DRG R + + + Sbjct 878660 MVKTKAIELINYDKLPAG*NAIVAIMSYSGYDIEDALILSKSSLDRGFGRCVVSKKF*CS 878839 Query 312 EKRVGMSVVEEFEKPHRSETLRLKHGTYDKLDEDGLVAPGVRISGEDIIIGKTAPIAPDS 371 K+ + P + + LD DG+ G I + + K P S Sbjct 878840 LKQYS**SYDRLVGPVADANGNIAQ-KFACLDRDGIAHVGCEIMSGQVYLNKQEPKEKRS 879016 Query 372 EELGQRTKYHTKRDVSTPL--RSTENGIVDKVMLTTNASGLKFVKVRMRTTKIPQIGDKF 429 + + + +++P+ +S ++ +DKVM++ N +KV +R T+ P++GDKF Sbjct 879017 DFAANDSGPSSITYLNSPMSFKSLKSAHIDKVMVSANTESSMNIKVNIR*TRRPELGDKF 879196 Query 430 ASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIECQLSKVASLRGF 489 ASRHGQKG G+ D+PF+ G+ PD+++NPH PSRMT+ +IE K L+G Sbjct 879197 ASRHGQKGVCGLITPMTDLPFSD*GITPDIVMNPHGFPSRMTVGKMIELLAGKAGVLKGE 879376 Query 490 EGDATPFTEVTVDSVSSLLRDAGYQSRG 517 T F ++ + +L D G+ G Sbjct 879377 L*YGTAFGGSRIEDMGKILVDHGFNYGG 879460 Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/111 (37%), Positives = 63/111 (57%), Gaps = 3/111 (3%) Frame = +2 Query 407 ASGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAI 466 A+ L + +++R ++GDKFASRHGQKG G+ D+PF+ G+ PD+++NPH Sbjct 883787 AA*LSHIDIKLRPA---ELGDKFASRHGQKGVCGLITPMTDLPFSD*GITPDIVMNPHGF 883957 Query 467 PSRMTIAHLIECQLSKVASLRGFEGDATPFTEVTVDSVSSLLRDAGYQSRG 517 PSRMT+ +IE K L+G T F ++ + +L D G+ G Sbjct 883958 PSRMTVGKMIELLAGKAGVLKGEL*YGTVFGGSRIEDMGKILVDHGFNYGG 884110 > scaffold-223 Length=76170 Score = 229 bits (583), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 147/508 (29%), Positives = 243/508 (48%), Gaps = 44/508 (9%) Frame = +2 Query 12 MEALEEYEPTRSPNATKIFVNGVWVGVHRDPAQLVSTVQSLRRTGVISPEISLVRDIRDR 71 + LE + P +FVNG +G+H P L + ++++RR G I+ +S+ + + Sbjct 29528 LNGLEIHAPVNGHQPFMVFVNGTLIGIHVRPDILAAKLRTMRRNGKINEFVSISLNPN*K 29707 Query 72 EFKIFTDAGRVCRPLYVVETTDDNGRQGELALQKHHIekleddkelpleeRYGWDGLLRD 131 I D GR+CRPL +V+ ++G+ ++ H+++L K + + L+D Sbjct 29708 SVHISADGGRICRPLIIVD------KKGQPLVKDKHMKELTSGKRV-------F*DFLKD 29848 Query 132 GVVEYIDAEEEETVMITMSPEDLEISRQVQAGYHVEAEQDLAKRIKASSSMNTHTWTHCE 191 G+VEY+D EE +I M ++ + E TH E Sbjct 29849 GLVEYLDVNEENDSLIAMYESEI-----------IPGET-----------------THVE 29944 Query 192 IHPSMILGVCASIIPFPDHNQSPRNTXXXXXXXXXXXXXXXXXXXXXXXXANILYYPQKP 251 I P +LG A IIP+P H+ R T L YPQ+P Sbjct 29945 IEPFTLLGAVAGIIPYPHHD*CARITFTCAMAK*S*SILAYNQFARIDTLL*ALVYPQQP 30124 Query 252 LATTRSMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYLDQ 311 + T+++E + + +LPAG NAIVAI YSGY+ ED++I+++SS+DRG R + + + Sbjct 30125 MVKTKAIELINYDKLPAG*NAIVAIMSYSGYDIEDALILSKSSLDRGFGRCVVSKKF*CS 30304 Query 312 EKRVGMSVVEEFEKPHRSETLRLKHGTYDKLDEDGLVAPGVRISGEDIIIGKTAPIAPDS 371 K+ + P + + LD DG+ G I + + K P S Sbjct 30305 LKQYS**SYDRLVGPVADANGNVAQ-KFACLDRDGIAHVGCEIKSGQVYLNKQEPKEKRS 30481 Query 372 EELGQRTKYHTKRDVSTPL--RSTENGIVDKVMLTTNASGLKFVKVRMRTTKIPQIGDKF 429 + + + +++P+ +S ++ +DKVM++ N +KV +R T+ P++GDKF Sbjct 30482 DFAANDSGPSSITYLNSPMSFKSLKSAHIDKVMVSANTESSMNIKVNIR*TRRPELGDKF 30661 Query 430 ASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIECQLSKVASLRGF 489 ASRHGQKG G+ D+PF+ G+ PD+++NPH PSRMT+ +IE K L+G Sbjct 30662 ASRHGQKGVCGLITPMTDLPFSD*GITPDIVMNPHGFPSRMTVGKMIELLAGKAGVLKGE 30841 Query 490 EGDATPFTEVTVDSVSSLLRDAGYQSRG 517 T F ++ + +L D G+ G Sbjct 30842 L*YGTAFGGSRIEDMGKILVDHGFNYGG 30925 Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 41/111 (37%), Positives = 63/111 (57%), Gaps = 3/111 (3%) Frame = +1 Query 407 ASGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAI 466 A+ L + +++R + +GDKFASRHGQKG G+ D+PF+ G+ PD+++NPH Sbjct 35917 AA*LSHIVIKLRPS---GLGDKFASRHGQKGVCGLITPMTDLPFSD*GITPDIVMNPHGF 36087 Query 467 PSRMTIAHLIECQLSKVASLRGFEGDATPFTEVTVDSVSSLLRDAGYQSRG 517 PSRMT+ +IE K L+G T F ++ + +L D G+ G Sbjct 36088 PSRMTVGKMIELLAGKAGVLKGEL*YGTAFGGSRIEDMGKILVDHGFNYGG 36240 > scaffold-300 Length=293202 Score = 142 bits (359), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 160/346 (46%), Gaps = 30/346 (9%) Frame = +3 Query 184 THTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTXXXXXXXXXXXXXXXXXXXXXXXXAN 243 T TH E P+ IL + A++ PF D NQS R Sbjct 99222 TGITTHIEFDPTDILSIMANLTPFSD*NQSCRVIYNA**SKQSMSNPLHAYPYRSDNKLY 99401 Query 244 ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSL 303 L Q P+ + P G N+IVA+ Y+GY+ ED++I+N+ S D G + Sbjct 99402 RLITCQSPIVRPKLYGNYGVDNYPGGFNSIVAVISYTGYDMEDAMILNKKSYDFGFMHGV 99581 Query 304 FYR-AYLD-QEKRV-GMSVVEEFEKPHRSETLRLKHGTYDKLDEDGLVAPGVRISGEDII 360 + Y+D E RV G S++ F ++T +L DKL DGL GV++S D Sbjct 99582 IMKHEYVDLGEMRVRGESIIHHFRC---TDTKKLGK---DKLGPDGLPLVGVKLSNGD-- 99737 Query 361 IGKTAPIAPDSEELGQRTKYHTKRDVSTPLRSTENGIVDKVMLTTNASG---LKFVKVRM 417 D+ + KY + E+ +V+ V L +G L+ + +++ Sbjct 99738 --PYYSYVIDTTGECKVVKY----------KGLEDAVVEDVRLIGIDAGTQELQKIGIKL 99881 Query 418 RTTKIPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIE 477 R + P IGDKF+SRHG KG Y+ ++PFT G++PDLIIN HA PSRMTI +E Sbjct 99882 RVNRNPVIGDKFSSRHG*KGICS*KYQVVNLPFTESGIMPDLIINAHAFPSRMTIG*FVE 100061 Query 478 CQLSKVASLRGFEGDATPFT----EVTVDSVSSLLRDAGYQSRGFE 519 +K + G DATPF + VD LR+AG+ G E Sbjct 100062 SMGAKAGAALGKCYDATPFKFNE*DTIVDYFGE*LREAGFNYYGNE 100199 > scaffold-157 Length=706690 Score = 135 bits (339), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/346 (32%), Positives = 158/346 (46%), Gaps = 30/346 (9%) Frame = -2 Query 184 THTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTXXXXXXXXXXXXXXXXXXXXXXXXAN 243 T TH E P+ IL + A++ PF D N S R Sbjct 605187 TGITTHIEFDPTDILSIMANLTPFSD*N*SCRVIYNA**SKQSMSNPLHAYPYRSDNKLY 605008 Query 244 ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSL 303 L Q P+ + P G N+IVA+ Y+GY+ ED++I+N+ S + G + Sbjct 605007 RLITCQSPIVRPKLYGNYGVDNYPGGFNSIVAVISYTGYDMEDAMILNKKSYEFGFMHGV 604828 Query 304 FYR-AYLD-QEKRV-GMSVVEEFEKPHRSETLRLKHGTYDKLDEDGLVAPGVRISGEDII 360 + Y+D E RV G S++ F ++T +L DKL DGL GV++S D Sbjct 604827 IMKHEYVDLGEMRVRGESIIHHFRC---TDTKKLGK---DKLGPDGLPLVGVKLSNGD-- 604672 Query 361 IGKTAPIAPDSEELGQRTKYHTKRDVSTPLRSTENGIVDKVMLTTNASG---LKFVKVRM 417 D+ + KY + E+ +V+ V L +G L + +++ Sbjct 604671 --PYYSYVIDTTGECKVVKY----------KGLEDAVVEDVRLIGIDAGTQEL*KIGIKL 604528 Query 418 RTTKIPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIE 477 R + P IGDKF+SRHG KG Y+ ++PFT G++PDLIIN HA PSRMTI +E Sbjct 604527 RVNRNPVIGDKFSSRHG*KGICS*KYQVVNLPFTESGIMPDLIINAHAFPSRMTIG*FVE 604348 Query 478 CQLSKVASLRGFEGDATPFT----EVTVDSVSSLLRDAGYQSRGFE 519 +K + G DATPF + VD LR+AG+ G E Sbjct 604347 SMGAKAGAALGKCYDATPFKFNE*DTIVDYFGE*LREAGFNYYGNE 604210 > scaffold-527 Length=392 Score = 83.6 bits (205), Expect = 3e-19, Method: Composition-based stats. Identities = 38/94 (40%), Positives = 55/94 (59%), Gaps = 0/94 (0%) Frame = +3 Query 424 QIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 483 ++GDKFASRHGQKG G+ D+PF+ G+ PD+++NPH PSRMT+ +IE K Sbjct 33 ELGDKFASRHGQKGVCGLITPMTDLPFSD*GITPDIVMNPHGFPSRMTVGKMIELLAGKA 212 Query 484 ASLRGFEGDATPFTEVTVDSVSSLLRDAGYQSRG 517 L+G T F ++ + +L D G+ G Sbjct 213 GVLKGEL*YGTVFGGSRIEDMGKILVDHGFNYGG 314 Lambda K H a alpha 0.318 0.134 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3250505409 Database: X5.fasta Posted date: Feb 2, 2022 10:52 PM Number of letters in database: 23,962,143 Number of sequences in database: 1,868 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40