BLASTN 2.2.21 [Jun-14-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= U32224 U32224.1 Escherichia coli membrane-bound lytic
transglycosylase A precursor (mltA) gene, complete cds.
(1098 letters)
Database: pm
204 sequences; 2,269,587 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE006212 Pasteurella multocida subsp. multocida str. Pm70 sectio... 32 0.49
AE006092 Pasteurella multocida subsp. multocida str. Pm70 sectio... 32 0.49
AE006205 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.9
AE006153 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.9
AE006110 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.9
AE006063 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.9
AE006048 Pasteurella multocida subsp. multocida str. Pm70 sectio... 30 1.9
AE006235 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006229 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006220 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006181 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006177 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006157 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006146 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006138 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006114 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006109 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006096 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006084 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006076 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006070 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006056 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
AE006035 Pasteurella multocida subsp. multocida str. Pm70 sectio... 28 7.7
>AE006212 Pasteurella multocida subsp. multocida str. Pm70 section 179
of 204 of the complete genome.
Length = 13738
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 431 cgccaaaacgtggtcg 446
||||||||||||||||
Sbjct: 11718 cgccaaaacgtggtcg 11733
>AE006092 Pasteurella multocida subsp. multocida str. Pm70 section 59
of 204 of the complete genome.
Length = 13170
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 658 gaagtgaaaaaagaag 673
||||||||||||||||
Sbjct: 3042 gaagtgaaaaaagaag 3057
>AE006205 Pasteurella multocida subsp. multocida str. Pm70 section 172
of 204 of the complete genome.
Length = 10552
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 237 tgtttataacgcggtgcaa 255
|||| ||||||||||||||
Sbjct: 3987 tgttcataacgcggtgcaa 3969
>AE006153 Pasteurella multocida subsp. multocida str. Pm70 section 120
of 204 of the complete genome.
Length = 13164
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 516 cctgatggataactt 530
|||||||||||||||
Sbjct: 5935 cctgatggataactt 5921
>AE006110 Pasteurella multocida subsp. multocida str. Pm70 section
77 of 204 of the complete genome.
Length = 10184
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 661 gtgaaaaaagaagat 675
|||||||||||||||
Sbjct: 726 gtgaaaaaagaagat 740
>AE006063 Pasteurella multocida subsp. multocida str. Pm70 section 30
of 204 of the complete genome.
Length = 10124
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 956 gtggtgcaatcaaag 970
|||||||||||||||
Sbjct: 5910 gtggtgcaatcaaag 5896
>AE006048 Pasteurella multocida subsp. multocida str. Pm70 section 15
of 204 of the complete genome.
Length = 12232
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 796 ggggcaagtgcggtg 810
|||||||||||||||
Sbjct: 5869 ggggcaagtgcggtg 5883
>AE006235 Pasteurella multocida subsp. multocida str. Pm70 section 202
of 204 of the complete genome.
Length = 10187
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 291 gcgccagttcggca 304
||||||||||||||
Sbjct: 6000 gcgccagttcggca 6013
>AE006229 Pasteurella multocida subsp. multocida str. Pm70 section
196 of 204 of the complete genome.
Length = 11895
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 757 ttcgtcttctttaa 770
||||||||||||||
Sbjct: 223 ttcgtcttctttaa 210
>AE006220 Pasteurella multocida subsp. multocida str. Pm70 section 187
of 204 of the complete genome.
Length = 13709
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 acgcggtgcaagag 258
||||||||||||||
Sbjct: 12110 acgcggtgcaagag 12123
>AE006181 Pasteurella multocida subsp. multocida str. Pm70 section 148
of 204 of the complete genome.
Length = 12169
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 tggcaatgcttgcc 57
||||||||||||||
Sbjct: 10650 tggcaatgcttgcc 10637
>AE006177 Pasteurella multocida subsp. multocida str. Pm70 section 144
of 204 of the complete genome.
Length = 14087
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 956 gtggtgcaatcaaa 969
||||||||||||||
Sbjct: 12617 gtggtgcaatcaaa 12604
>AE006157 Pasteurella multocida subsp. multocida str. Pm70 section 124
of 204 of the complete genome.
Length = 10024
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 790 gtgaaaggggcaag 803
||||||||||||||
Sbjct: 7402 gtgaaaggggcaag 7415
>AE006146 Pasteurella multocida subsp. multocida str. Pm70 section 113
of 204 of the complete genome.
Length = 10734
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 acagcaatataaag 100
||||||||||||||
Sbjct: 2048 acagcaatataaag 2035
>AE006138 Pasteurella multocida subsp. multocida str. Pm70 section 105
of 204 of the complete genome.
Length = 11115
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 659 aagtgaaaaaagaa 672
||||||||||||||
Sbjct: 10716 aagtgaaaaaagaa 10729
>AE006114 Pasteurella multocida subsp. multocida str. Pm70 section 81
of 204 of the complete genome.
Length = 7433
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 659 aagtgaaaaaagaa 672
||||||||||||||
Sbjct: 5206 aagtgaaaaaagaa 5219
>AE006109 Pasteurella multocida subsp. multocida str. Pm70 section
76 of 204 of the complete genome.
Length = 13603
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 664 aaaaaagaagatat 677
||||||||||||||
Sbjct: 901 aaaaaagaagatat 888
>AE006096 Pasteurella multocida subsp. multocida str. Pm70 section 63
of 204 of the complete genome.
Length = 10591
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 425 gtatgccgccaaaa 438
||||||||||||||
Sbjct: 9959 gtatgccgccaaaa 9946
>AE006084 Pasteurella multocida subsp. multocida str. Pm70 section 51
of 204 of the complete genome.
Length = 10499
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 691 attcgtcactgggg 704
||||||||||||||
Sbjct: 9442 attcgtcactgggg 9429
>AE006076 Pasteurella multocida subsp. multocida str. Pm70 section 43
of 204 of the complete genome.
Length = 10206
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 989 atcaagggatcggg 1002
||||||||||||||
Sbjct: 2176 atcaagggatcggg 2163
>AE006070 Pasteurella multocida subsp. multocida str. Pm70 section
37 of 204 of the complete genome.
Length = 11579
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 276 tgatacccgcaata 289
||||||||||||||
Sbjct: 494 tgatacccgcaata 481
>AE006056 Pasteurella multocida subsp. multocida str. Pm70 section
23 of 204 of the complete genome.
Length = 11122
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 263 tgcgcgcaggcggt 276
||||||||||||||
Sbjct: 229 tgcgcgcaggcggt 242
>AE006035 Pasteurella multocida subsp. multocida str. Pm70 section 2 of
204 of the complete genome.
Length = 11220
Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 taaagacgggaaat 109
||||||||||||||
Sbjct: 10223 taaagacgggaaat 10210
Database: pm
Posted date: Nov 13, 2009 3:07 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 204
Number of Hits to DB: 23,269
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 1098
Length of database: 2,269,587
Length adjustment: 16
Effective length of query: 1082
Effective length of database: 2,266,323
Effective search space: 2452161486
Effective search space used: 2452161486
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 14 (28.2 bits)
S2: 14 (28.2 bits)