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Header
Program needle
Rundate Fri Mar 30 2007 20:53:48
Align format srspair
Report file temp_job1.needlep
Results
 
#=======================================
#
# Aligned_sequences: 2
# 1: PYRD_ECOLI
# 2: PYRD_METJA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity:      88/320 (27.5%)
# Similarity:   149/320 (46.6%)
# Gaps:          64/320 (20.0%)
# Score: 311.0
# 
#
#=======================================

PYRD_ECOLI         1 ---VNCMGLTFKNPLGLAAG-LDKDGECIDALGAMGFGSIEIGTVTPRPQ     46
                        .|..|:.||||:.||:| :.:.|..:..:...|.|::...::...|.
PYRD_METJA         1 MLKTNICGIEFKNPVFLASGIMGETGSALKRIAKGGAGAVTTKSIGLNPN     50

PYRD_ECOLI        47 PGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYD------GVL     90
                     ||:..|.:..:..  |.:|.||..|.|||..:|.::|...:      .::
PYRD_METJA        51 PGHKNPTIVEVYG--GFLNAMGLPNPGVDEYLEEIEKVRDELNRMDVRII     98

PYRD_ECOLI        91 GINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQY    140
                     |...||:::...|..|        |:..|...|.:|||.|:..|     |
PYRD_METJA        99 GSIYGKDEEEFAEVAK--------KMERYVDIIELNISCPHAKG-----Y    135

PYRD_ECOLI       141 GEALD-------DLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQ    183
                     |..:.       |:..|:|....         :|:..|:.|:::  ::|:
PYRD_METJA       136 GATIGQNPDLSYDVCKAVKKAVK---------IPVFAKLTPNVT--DIIE    174

PYRD_ECOLI       184 VADSLVRHNIDGVIATNTTLDRSLVQGMK---------NCDQTGGLSGRP    224
                     :|.::|...:||::|.||      |:||.         ..::.|||||:.
PYRD_METJA       175 IAQAVVDAGVDGLVAINT------VRGMAIDIRAKKPILANKFGGLSGKA    218

PYRD_ECOLI       225 LQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSG    274
                     ::....:::  ..|..|..:||||||||.|...|.|.:.||||.|||.||
PYRD_METJA       219 IKSIGIKVV--WDLYENFDVPIIGVGGIMSGEDAIEYMMAGASAVQIGSG    266

PYRD_ECOLI       275 FIFKGPPLIKEIVTHI----    290
                     ..::|..:.|::...|    
PYRD_METJA       267 VYYRGYDIFKKVCDEIISFL    286


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