RID: 2UKKZC1W016 Job Title:HIV-1 group M subtype B protease P12497 Program: BLASTP Query: HIV-1 group M subtype B protease P12497 ID: lcl|Query_7791587(amino acid) Length: 99 Database: nr All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 202 202 100% 3e-64 100.00 155 ARF19905.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 3e-64 100.00 155 ARF19889.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 4e-64 98.99 155 AFH76670.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 4e-64 100.00 155 AFH76786.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 4e-64 100.00 158 AFH76720.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 5e-64 98.99 155 AFH76811.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 5e-64 100.00 155 AFH76754.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 100% 5e-64 100.00 131 AAQ54350.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 6e-64 100.00 103 ADN06987.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 7e-64 98.99 155 AFH76583.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 7e-64 100.00 169 ANJ15979.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 7e-64 100.00 123 AAL57787.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 8e-64 100.00 122 AAL57777.1 pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 8e-64 98.99 122 AAA91447.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 8e-64 98.99 165 ABN04517.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 8e-64 100.00 116 AAB58487.1 pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 8e-64 100.00 175 AAG25535.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 8e-64 100.00 122 AAL57774.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 201 201 100% 9e-64 98.99 165 ABN04524.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 200 200 100% 1e-63 100.00 154 AAA21289.2 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 1e-63 100.00 123 AAL57775.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 1e-63 98.99 133 AAQ54483.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 100.00 100 AAK09329.1 Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 100.00 99 1A8G_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 1e-63 100.00 141 AAQ54345.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 1e-63 98.99 133 AAV31692.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 AAK12432.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 AAB67190.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 UYP42637.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 ACV19584.1 V-1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 CAB66023.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 AAP15143.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 98.99 99 AAP72885.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 1e-63 100.00 100 AAW24165.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 1e-63 100.00 136 AAQ54370.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 98.99 99 AAV55761.1 pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 2e-63 98.99 106 AAA91454.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 98.99 99 ABN47617.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 2e-63 98.99 115 AAP14547.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 97.98 99 AAB67217.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 97.98 99 AAQ98686.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 97.98 99 AAD46245.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 97.98 99 AAF27855.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 98.99 103 ADN07075.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 98.99 99 AAK67567.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 98.99 99 AAS20644.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 97.98 99 AAD44665.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 2e-63 98.99 99 AAB52116.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 3e-63 97.98 126 AAX49242.1 polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAF19481.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAT79899.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAK67566.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 100 AAW24194.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAS20656.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAK12453.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 96.97 99 AAQ98682.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 96.97 99 AAB67192.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 ACV19684.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAV55451.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 ACV19383.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 3e-63 98.99 149 BAO14374.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 3e-63 98.99 142 AAQ54373.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 ACL97863.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAV56254.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAU95700.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 ACV17622.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAQ98724.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 3e-63 98.99 135 AAQ56937.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAN38245.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAS20632.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 115 AAP14605.1 pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 3e-63 100.00 132 AAA91429.1 Chain A, HIV-1 PROTEASE [Human immunodeficiency virus] Human immuno... NA 12721 197 197 100% 3e-63 98.99 110 1W5V_A pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 199 199 100% 3e-63 100.00 143 AAA91431.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 115 AAP14433.1 pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 3e-63 98.99 130 AAA91436.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAK12510.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAB67180.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 99 AAL06148.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 ADC96046.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 97.98 115 AAP14487.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAL59264.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAA61442.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 3e-63 98.99 99 AAK67554.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 AAK12485.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 96.97 99 ABN55142.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 ABA71133.1 Chain A, Gag-Pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 100 2FDE_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAT79874.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAS76917.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAT80013.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 100 AAK09346.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 95.96 99 AAD46249.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 ACV17166.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 ACV17520.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAB67191.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 ABC48179.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 115 AAP14533.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAR96548.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AEU03684.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAD44655.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAF63588.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AEU01737.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AET99303.1 V-1 protease [Human immunodeficiency virus] Human immuno... NA 12721 197 197 100% 4e-63 97.98 99 CAA10019.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AET99505.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AEU00248.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAD44678.1 Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 1AJV_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 AAK67557.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 96.97 99 AAL68998.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 AAS20652.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 AAK67576.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 AAK67595.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 96.97 100 AAW24158.1 Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 2AZ8_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 123 AAL57786.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 97.98 99 AAB82844.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 96.97 99 AAD44648.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 118 AAL71127.1 HIV-1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 100 BAA88354.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 4e-63 98.99 99 AAD44589.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-63 97.98 99 AAT80017.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-63 97.98 99 AAP15088.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-63 98.99 99 AAK67561.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-63 97.98 99 AAV54695.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-63 97.98 99 AAK67541.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 98.99 99 AAK67450.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 98.99 99 AEO27594.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 96.97 99 UYP43024.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 96.97 99 AAG33266.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 99 AAC61546.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 99 ACV18144.1 Chain A, Protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 99 6DH6_A Chain A, Protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 99 6DH0_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 99 ACR82068.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 96.97 99 UYP42273.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 98.99 99 AAK12468.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 99 ABA71185.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 96.97 99 URX39598.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 97.98 100 AAK09332.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 5e-63 98.99 99 AAD39733.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 5e-63 97.98 118 AAL71130.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 98.99 99 AAK67536.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 ADC96073.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 98.99 99 AAV55240.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 96.97 99 ABM21828.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 96.97 99 AAV55868.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AET99940.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 96.97 99 AAL37766.1 polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAF18207.1 truncated pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 6e-63 97.98 154 AAF88499.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAM92580.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 95.96 99 ACV17938.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAV56068.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 197 197 100% 6e-63 98.99 115 AAQ74934.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AFH76815.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAF05680.1 Chain A, Protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 2R38_A Chain A, Protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 2R3T_A retropepsin [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 NP_705926.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAF80909.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 ACV17282.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 95.96 99 ACV19527.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 98.99 99 AAR86092.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AET99354.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 98.99 99 AAK67455.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 98.99 99 ADC96048.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 96.97 99 ACV17318.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 96.97 99 ACR82048.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 96.97 99 ACM47211.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAC61531.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 98.99 100 WVS23004.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAK67451.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAK67448.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AEU01744.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAR89384.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AET99907.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AET99677.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAB67182.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 6e-63 97.98 99 AAK67548.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 95.96 99 AAQ98710.1 Chain A, NL4-3 PROTEASE [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 6OOS_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AEU00293.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AET99364.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAK67363.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 ABS31816.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 ABN55060.1 pol polyprotein [Human immunodeficiency virus 1] Human immuno... NA 11676 198 198 100% 7e-63 98.99 160 AAA91451.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 95.96 100 AAW24218.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AET99732.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAV55719.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 96.97 99 URX38907.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AFH76819.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AEU00288.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AAP72907.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAB67174.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 94.95 99 ACR81980.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 ABN47522.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AEU01470.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 ACV20371.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 95.96 99 URX39698.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAG13240.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAG13249.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AET99343.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 ACV17189.1 Chain A, PROTEIN (HIV-1 PROTEASE) [Human immunodeficiency viru... Human immuno... NA 11676 196 196 100% 7e-63 96.97 99 1BV9_A protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAV56606.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AAF27904.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AET99339.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAF64198.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAV56241.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 98.99 99 AAQ98720.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AAT80174.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 URX39926.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 97.98 99 AAU95698.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 96.97 99 AAF72430.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 7e-63 96.97 99 ACR82062.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 UYP42245.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 96.97 99 ALS06543.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAG36399.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAG15079.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 96.97 99 AAG18258.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 96.97 99 AAF43171.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 95.96 99 ACV19690.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAV56531.1 HIV-1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 100 BAA88355.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAC61565.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAV55803.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 ACV19140.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 ACV17941.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAC12672.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 AET99297.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAN38132.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 AEU00799.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 98.99 99 AAV56240.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 96.97 99 AAB52139.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 AAC61538.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 95.96 99 AAR96482.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 95.96 99 ABN55225.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 AAN38082.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 ABN47640.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 AFH76562.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 96.97 115 AAP14504.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 97.98 99 AEU02059.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 8e-63 95.96 99 ABC48190.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-63 96.97 99 AAN28517.1 protease [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-63 98.99 99 AAV56379.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-63 96.97 99 UYP43566.1 pol protein [Human immunodeficiency virus 1] Human immuno... NA 11676 196 196 100% 9e-63 97.98 99 ADC96109.1 Alignments: >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARF19905.1 Length: 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARF20023.1 Length: 155 Range 1: 57 to 155 Score:202 bits(513), Expect:3e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ARF19889.1 Length: 155 Range 1: 57 to 155 Score:201 bits(512), Expect:3e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76670.1 Length: 155 Range 1: 57 to 155 Score:201 bits(512), Expect:4e-64, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76786.1 Length: 155 Range 1: 57 to 155 Score:201 bits(512), Expect:4e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76720.1 Length: 158 Range 1: 60 to 158 Score:201 bits(512), Expect:4e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 119 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 120 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 158 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76811.1 Length: 155 Range 1: 57 to 155 Score:201 bits(511), Expect:5e-64, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76754.1 Length: 155 Range 1: 57 to 155 Score:201 bits(511), Expect:5e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ54350.1 Length: 131 Range 1: 19 to 117 Score:200 bits(509), Expect:5e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 19 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 78 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 79 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 117 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ADN06987.1 Length: 103 Range 1: 5 to 103 Score:199 bits(506), Expect:6e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 5 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 64 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 65 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 103 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76583.1 Length: 155 Range 1: 57 to 155 Score:201 bits(510), Expect:7e-64, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 155 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ANJ15979.1 Length: 169 Range 1: 57 to 155 Score:201 bits(511), Expect:7e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57787.1 Length: 123 Range 1: 15 to 113 Score:199 bits(507), Expect:7e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57777.1 Length: 122 Range 1: 15 to 113 Score:199 bits(507), Expect:8e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91447.1 Length: 122 Range 1: 14 to 112 Score:199 bits(507), Expect:8e-64, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 14 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 73 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 74 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 112 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABN04517.1 Length: 165 Range 1: 57 to 155 Score:201 bits(511), Expect:8e-64, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB58487.1 Length: 116 Range 1: 14 to 112 Score:199 bits(506), Expect:8e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 14 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 73 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 74 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 112 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAG25535.1 Length: 175 Range 1: 57 to 155 Score:201 bits(511), Expect:8e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57774.1 Length: 122 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57776.1 Length: 122 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57779.1 Length: 122 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57780.1 Length: 122 Range 1: 15 to 113 Score:199 bits(507), Expect:8e-64, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABN04524.1 Length: 165 Range 1: 57 to 155 Score:201 bits(510), Expect:9e-64, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 57 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 116 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 117 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 155 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAA21289.2 Length: 154 Range 1: 39 to 137 Score:200 bits(509), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 39 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 98 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 137 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57775.1 Length: 123 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57778.1 Length: 123 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57781.1 Length: 123 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57782.1 Length: 123 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57784.1 Length: 123 Range 1: 15 to 113 Score:199 bits(506), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ54483.1 Length: 133 Range 1: 22 to 120 Score:199 bits(507), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTI+IGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 22 PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 81 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 82 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 120 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK09329.1 Length: 100 Range 1: 2 to 100 Score:198 bits(504), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 2 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 61 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 62 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1A8G_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1A8G_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EBY_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EBY_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HXW_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HXW_B Length: 99 >Chain A, proteinase [Human immunodeficiency virus 1] Sequence ID: 1IZH_A Length: 99 >Chain B, proteinase [Human immunodeficiency virus 1] Sequence ID: 1IZH_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1PRO_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1PRO_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus type 1 BH10] Sequence ID: 1SBG_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus type 1 BH10] Sequence ID: 1SBG_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1VIJ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1VIJ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1VIK_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1VIK_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2HVP_A Length: 99 >Chain A, Pol polyprotein [unidentified] Sequence ID: 2QMP_A Length: 99 >Chain B, Pol polyprotein [unidentified] Sequence ID: 2QMP_B Length: 99 >Chain A, HIV-1 protease [Human immunodeficiency virus 1] Sequence ID: 3M9F_A Length: 99 >Chain B, HIV-1 protease [Human immunodeficiency virus 1] Sequence ID: 3M9F_B Length: 99 >Chain A, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_A Length: 99 >Chain B, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_B Length: 99 >Chain C, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_C Length: 99 >Chain D, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_D Length: 99 >Chain E, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_E Length: 99 >Chain F, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_F Length: 99 >Chain G, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_G Length: 99 >Chain H, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_H Length: 99 >Chain I, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_I Length: 99 >Chain J, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_J Length: 99 >Chain K, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_K Length: 99 >Chain L, Protease/reverse transcriptase [Human immunodeficiency virus 1] Sequence ID: 3S85_L Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4LL3_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4LL3_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 4PHV_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 4PHV_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 5HVP_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 5HVP_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 5IVQ_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 5IVQ_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 5IVR_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 5IVR_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 5IVS_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 5IVS_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6MCR_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6MCS_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6OGP_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6OYD_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6OYR_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7WBS_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7WBS_B Length: 99 >Chain A, Protease [Human immunodeficiency virus] Sequence ID: 7WCQ_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7YF6_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7YF6_B Length: 99 >Chain A, HIV-1 Protease [Human immunodeficiency virus 1] Sequence ID: 9HVP_A Length: 99 >Chain B, HIV-1 Protease [Human immunodeficiency virus 1] Sequence ID: 9HVP_B Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAA61433.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB51862.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67211.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67216.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67225.1 Length: 99 Range 1: 1 to 99 Score:198 bits(504), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ54345.1 Length: 141 Range 1: 29 to 127 Score:199 bits(507), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 29 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 88 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 89 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 127 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV31692.1 Length: 133 Range 1: 23 to 121 Score:199 bits(506), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 23 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 82 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 83 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 121 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12432.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL69008.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN38081.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP74316.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV54664.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67190.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61542.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD21950.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44592.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44645.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42637.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19584.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEO27548.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEO27549.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >V-1 protease, partial [Human immunodeficiency virus 1] Sequence ID: CAB66023.1 Length: 99 >V-1 protease, partial [Human immunodeficiency virus 1] Sequence ID: CAB66036.1 Length: 99 >V-1 protease, partial [Human immunodeficiency virus 1] Sequence ID: CAB66042.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP15143.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP72885.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAU95726.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17104.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17800.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19063.1 Length: 99 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAW24165.1 Length: 100 Range 1: 1 to 99 Score:198 bits(503), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ54370.1 Length: 136 Range 1: 29 to 127 Score:199 bits(506), Expect:1e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 29 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 88 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 89 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 127 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55761.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABA71123.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABA71135.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNL+TQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF 99 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91454.1 Length: 106 Range 1: 8 to 106 Score:198 bits(503), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 8 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 67 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 68 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 106 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN47617.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQJGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14547.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14551.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14555.1 Length: 115 Range 1: 7 to 105 Score:198 bits(503), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 7 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 66 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 67 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 105 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67217.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67218.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAO14013.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98686.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98714.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76678.1 Length: 99 >HIV-1 protease, partial [Human immunodeficiency virus 1] Sequence ID: CAA09220.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD46245.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76764.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF27855.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ADN07075.1 Length: 103 Range 1: 5 to 103 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 5 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 64 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 65 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 103 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67567.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAS20651.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QMLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAS20644.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAMGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44665.1 Length: 99 Range 1: 1 to 99 Score:197 bits(502), Expect:2e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNL+TQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52116.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52117.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52118.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52119.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52121.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:2e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAX49242.1 Length: 126 Range 1: 16 to 114 Score:198 bits(504), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 16 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 75 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 76 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 114 >polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAF19481.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF80891.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98696.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR86101.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR86102.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT79899.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP+NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67566.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGT+LVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTILVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAW24194.1 Length: 100 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAS20656.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+VTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12453.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01333.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU03260.1 Length: 99 >protease, partial [Human immunodeficiency virus] Sequence ID: AFB77443.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76778.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98682.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAY25950.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67192.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV54964.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV54965.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56415.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABO70082.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19684.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP VTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPJVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55451.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV+IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVSIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19383.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42733.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTV+EEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVVEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: BAO14374.1 Length: 149 Range 1: 1 to 99 Score:199 bits(505), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ54373.1 Length: 142 Range 1: 26 to 124 Score:199 bits(505), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 26 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 85 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 86 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 124 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACL97863.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56254.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP+NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAU95700.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAU95701.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17622.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17805.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20764.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98724.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20581.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: BAO14277.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AAQ56937.1 Length: 135 Range 1: 1 to 99 Score:198 bits(504), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN38245.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55443.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55444.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20138.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAMGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAS20632.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAMGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14605.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14606.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14607.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14608.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14609.1 Length: 115 Range 1: 7 to 105 Score:197 bits(502), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV+IKIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 7 PQITLWQRPLVSIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 66 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 67 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 105 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91429.1 Length: 132 Range 1: 9 to 107 Score:198 bits(504), Expect:3e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 9 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 68 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 69 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 107 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1W5V_A Length: 110 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1W5V_B Length: 110 >Chain A, POL POLYPROTEIN [Human immunodeficiency virus] Sequence ID: 1W5W_A Length: 110 >Chain B, POL POLYPROTEIN [Human immunodeficiency virus] Sequence ID: 1W5W_B Length: 110 >Chain A, POL POLYPROTEIN [Human immunodeficiency virus] Sequence ID: 1W5X_A Length: 110 >Chain B, POL POLYPROTEIN [Human immunodeficiency virus] Sequence ID: 1W5X_B Length: 110 >Chain A, POL POLYPROTEIN [Human immunodeficiency virus] Sequence ID: 1W5Y_A Length: 110 >Chain B, POL POLYPROTEIN [Human immunodeficiency virus] Sequence ID: 1W5Y_B Length: 110 Range 1: 12 to 110 Score:197 bits(502), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 12 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 71 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 72 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 110 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91431.1 Length: 143 Range 1: 15 to 113 Score:199 bits(505), Expect:3e-63, Method:Compositional matrix adjust., Identities:99/99(100%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 74 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 75 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14433.1 Length: 115 Range 1: 7 to 105 Score:197 bits(502), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 7 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 66 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 67 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 105 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91436.1 Length: 130 Range 1: 22 to 120 Score:198 bits(503), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG WKPKMIGGIGGFIKVRQYD Sbjct 22 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGEWKPKMIGGIGGFIKVRQYD 81 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 82 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 120 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12510.1 Length: 99 >reverse transcriptase, partial [Human immunodeficiency virus 1] Sequence ID: AAL58988.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV18140.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39196.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTI+IGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67180.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: BAK40831.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: BAO14446.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL06148.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL06155.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAY25966.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06536.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06542.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96046.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRW+PKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWRPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14487.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14490.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14499.1 Length: 115 Range 1: 7 to 105 Score:197 bits(502), Expect:3e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 7 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 66 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 67 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 105 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL59264.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20139.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKV+QYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVKQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAA61442.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAA61450.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD21947.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG15076.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG15077.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67554.1 Length: 99 Range 1: 1 to 99 Score:197 bits(501), Expect:3e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIG+NLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGKNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12485.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKI GQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIAGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55142.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55143.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39882.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABA71133.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU03327.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNF 99 >Chain A, Gag-Pol polyprotein [Human immunodeficiency virus 1] Sequence ID: 2FDE_A Length: 100 >Chain B, Gag-Pol polyprotein [Human immunodeficiency virus 1] Sequence ID: 2FDE_B Length: 100 Range 1: 2 to 100 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 2 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 61 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 62 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT79874.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80062.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80071.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80146.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80201.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAS76917.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+VTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80013.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK09346.1 Length: 100 Range 1: 2 to 100 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 2 PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 61 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 62 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD46249.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17166.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AWF73447.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AWF73448.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: QCO90344.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTI+IGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17520.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV18091.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV18166.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19898.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX38844.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGH+AIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHRAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67191.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61557.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF80897.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTI++GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIRVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABC48179.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17505.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17701.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17912.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRN+LTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNMLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14533.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14538.1 Length: 115 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14544.1 Length: 115 Range 1: 7 to 105 Score:197 bits(502), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 7 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 66 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQ+GCTLNF Sbjct 67 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF 105 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR96548.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02009.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU03684.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIE+CGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEVCGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44655.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKV+QYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVKQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF63588.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR96545.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC95965.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99474.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99534.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01737.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01748.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01763.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01766.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01772.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99303.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99367.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99493.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99582.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99648.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >V-1 protease, partial [Human immunodeficiency virus] Sequence ID: CAA10019.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99505.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99908.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00476.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00248.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44678.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTV+VGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVVVGPTPVNIIGRNLLTQIGCTLNF 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1AJV_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1AJV_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1AJX_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1AJX_B Length: 99 >Chain A, PROTEIN (PROTEASE) [Human immunodeficiency virus 1] Sequence ID: 1C70_A Length: 99 >Chain B, PROTEIN (PROTEASE) [Human immunodeficiency virus 1] Sequence ID: 1C70_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1D4H_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1D4H_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1D4I_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1D4I_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1D4J_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus] Sequence ID: 1D4J_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1DIF_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1DIF_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EBW_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EBW_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EBZ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EBZ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC0_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC0_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC1_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC1_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC2_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC2_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC3_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1EC3_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1FQX_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1FQX_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1G2K_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1G2K_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1G35_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1G35_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1GNO_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1GNO_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HBV_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HBV_B Length: 99 >Chain A, UNLIGANDED HIV-1 PROTEASE [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 1HHP_A Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HIH_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HIH_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HOS_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HOS_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HPS_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HPS_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HPV_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HPV_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HPX_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HPX_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HSG_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HSG_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HTE_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HTE_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HTF_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HTF_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HTG_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HTG_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVI_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVI_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVJ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVJ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVK_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVK_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVL_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1HVL_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1IIQ_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1IIQ_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1M0B_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1M0B_B Length: 99 >Chain A, protease [Human immunodeficiency virus 1] Sequence ID: 1MUI_A Length: 99 >Chain B, protease [Human immunodeficiency virus 1] Sequence ID: 1MUI_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1NH0_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1NH0_B Length: 99 >Chain A, POL polyprotein [Human immunodeficiency virus 1] Sequence ID: 1NPA_A Length: 99 >Chain B, POL polyprotein [Human immunodeficiency virus 1] Sequence ID: 1NPA_B Length: 99 >Chain A, POL polyprotein [Human immunodeficiency virus 1] Sequence ID: 1NPV_A Length: 99 >Chain B, POL polyprotein [Human immunodeficiency virus 1] Sequence ID: 1NPV_B Length: 99 >Chain A, POL polyprotein [Human immunodeficiency virus 1] Sequence ID: 1NPW_A Length: 99 >Chain B, POL polyprotein [Human immunodeficiency virus 1] Sequence ID: 1NPW_B Length: 99 >Chain A, ASPARTYLPROTEASE [Human immunodeficiency virus 1] Sequence ID: 1OHR_A Length: 99 >Chain B, ASPARTYLPROTEASE [Human immunodeficiency virus 1] Sequence ID: 1OHR_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 1SP5_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 1SP5_B Length: 99 >Chain A, Pol polyprotein [Contains: Protease (Retropepsin)] [Human immunodeficiency virus 1] Sequence ID: 1T7K_A Length: 99 >Chain B, Pol polyprotein [Contains: Protease (Retropepsin)] [Human immunodeficiency virus 1] Sequence ID: 1T7K_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1U8G_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1U8G_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1UPJ_A Length: 99 >Chain A, POL PROTEIN (FRAGMENT) [Human immunodeficiency virus 1] Sequence ID: 1WBK_A Length: 99 >Chain B, POL PROTEIN (FRAGMENT) [Human immunodeficiency virus 1] Sequence ID: 1WBK_B Length: 99 >Chain A, POL PROTEIN (FRAGMENT) [Human immunodeficiency virus 1] Sequence ID: 1WBM_A Length: 99 >Chain B, POL PROTEIN (FRAGMENT) [Human immunodeficiency virus 1] Sequence ID: 1WBM_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1XL2_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1XL2_B Length: 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1XL5_A Length: 99 >Chain B, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 1XL5_B Length: 99 >Chain A, Pol polyprotein [Human immunodeficiency virus 1] Sequence ID: 1YT9_A Length: 99 >Chain B, Pol polyprotein [Human immunodeficiency virus 1] Sequence ID: 1YT9_B Length: 99 >Chain A, Pol polyprotein [Human immunodeficiency virus 1] Sequence ID: 2A4F_A Length: 99 >Chain B, Pol polyprotein [Human immunodeficiency virus 1] Sequence ID: 2A4F_B Length: 99 >Chain A, HIV-1 Protease [Human immunodeficiency virus 1] Sequence ID: 2AQU_A Length: 99 >Chain B, HIV-1 Protease [Human immunodeficiency virus 1] Sequence ID: 2AQU_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2BB9_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2BB9_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2BBB_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2BBB_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPV_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPV_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPW_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPW_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPX_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPX_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPY_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPY_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPZ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BPZ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BQV_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2BQV_B Length: 99 >Chain A, POL PROTEIN [Human immunodeficiency virus 1] Sequence ID: 2CEJ_A Length: 99 >Chain B, POL PROTEIN [Human immunodeficiency virus 1] Sequence ID: 2CEJ_B Length: 99 >Chain A, POL PROTEIN [Human immunodeficiency virus 1] Sequence ID: 2CEM_A Length: 99 >Chain B, POL PROTEIN [Human immunodeficiency virus 1] Sequence ID: 2CEM_B Length: 99 >Chain A, POL PROTEIN [Human immunodeficiency virus 1] Sequence ID: 2CEN_A Length: 99 >Chain B, POL PROTEIN [Human immunodeficiency virus 1] Sequence ID: 2CEN_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2PQZ_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2PQZ_B Length: 99 >Chain A, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2PWC_A Length: 99 >Chain B, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2PWC_B Length: 99 >Chain A, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2PWR_A Length: 99 >Chain B, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2PWR_B Length: 99 >Chain A, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2QNN_A Length: 99 >Chain B, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2QNN_B Length: 99 >Chain A, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2QNP_A Length: 99 >Chain B, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2QNP_B Length: 99 >Chain A, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2QNQ_A Length: 99 >Chain B, Gag-Pol polyprotein (Pr160Gag-Pol) [Human immunodeficiency virus 1] Sequence ID: 2QNQ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2UPJ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2UPJ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2UXZ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2UXZ_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2UY0_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 2UY0_B Length: 99 >Chain A, PROTEASE [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: 2WKZ_A Length: 99 >Chain B, PROTEASE [Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)] Sequence ID: 2WKZ_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2ZGA_A Length: 99 >Chain A, Protease [unidentified] Sequence ID: 3BGB_A Length: 99 >Chain B, Protease [unidentified] Sequence ID: 3BGB_B Length: 99 >Chain A, Protease [unidentified] Sequence ID: 3BGC_A Length: 99 >Chain B, Protease [unidentified] Sequence ID: 3BGC_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 3BHE_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 3BHE_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 3CKT_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 3CKT_B Length: 99 >Chain A, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGA_A Length: 99 >Chain B, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGA_B Length: 99 >Chain C, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGA_C Length: 99 >Chain D, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGA_D Length: 99 >Chain G, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGA_G Length: 99 >Chain H, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGA_H Length: 99 >Chain A, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_A Length: 99 >Chain B, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_B Length: 99 >Chain C, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_C Length: 99 >Chain D, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_D Length: 99 >Chain E, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_E Length: 99 >Chain F, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_F Length: 99 >Chain G, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_G Length: 99 >Chain H, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_H Length: 99 >Chain I, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGV_I Length: 99 >Chain A, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_A Length: 99 >Chain B, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_B Length: 99 >Chain C, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_C Length: 99 >Chain D, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_D Length: 99 >Chain E, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_E Length: 99 >Chain F, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_F Length: 99 >Chain G, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_G Length: 99 >Chain H, V-1 protease [Human immunodeficiency virus 1] Sequence ID: 3GGX_H Length: 99 >Chain A, UNLIGANDED HIV-1 PROTEASE [HIV-1 M:B_HXB2R] Sequence ID: 3PHV_A Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 3PSU_A Length: 99 >Chain A, HIV-1 Protease [Human immunodeficiency virus 1] Sequence ID: 3T11_A Length: 99 >Chain B, HIV-1 Protease [Human immunodeficiency virus 1] Sequence ID: 3T11_B Length: 99 >Chain A, HIV protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 4FE6_A Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 4HLA_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 4HLA_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4I8W_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4I8W_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4I8Z_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4I8Z_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 5TYR_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 5TYR_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 5TYS_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 5TYS_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6D0D_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6D0D_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6D0E_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6D0E_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6UWB_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6UWB_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6UWC_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6UWC_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 7UPJ_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 7UPJ_B Length: 99 >protease, partial [synthetic construct] Sequence ID: AGS12439.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61524.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61562.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF27892.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12513.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67557.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPV+IIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVSIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL68998.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98695.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAS20652.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRW+PKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWEPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67576.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96047.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTI+IGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIEIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67595.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFI+VRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIEVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAW24158.1 Length: 100 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >Chain A, PROTEASE RETROPEPSIN [Human immunodeficiency virus 1] Sequence ID: 2AZ8_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2HB4_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2PC0_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 3KF0_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 3KF0_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFN_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFN_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFP_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFR_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFR_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFS_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 3KFS_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4E43_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4E43_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4EJD_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4EJD_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4EJK_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4EJK_B Length: 99 >Chain A, HIV Protease [Human immunodeficiency virus 1] Sequence ID: 4TVG_A Length: 99 >Chain B, HIV Protease [Human immunodeficiency virus 1] Sequence ID: 4TVG_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 4TVH_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 4TVH_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 5VCK_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 5VCK_B Length: 99 >Chain A, HIV-1 protease [Human immunodeficiency virus 1] Sequence ID: 5VEA_A Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DGX_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DGX_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DGY_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DGY_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DGZ_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DGZ_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OPS_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OPS_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXO_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXO_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXP_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXP_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXQ_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXQ_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXR_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXR_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXS_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXS_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXT_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXT_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXU_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXU_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXV_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXV_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXW_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXW_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXX_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXX_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXY_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXY_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXZ_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OXZ_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OY0_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OY0_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OY1_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OY1_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OY2_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6OY2_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJB_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJB_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJC_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJC_B Length: 99 >Chain C, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJC_C Length: 99 >Chain D, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJC_D Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJD_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJD_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJE_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJE_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJF_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJF_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJG_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJG_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJH_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJH_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJI_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJI_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJK_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJK_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJL_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJL_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJM_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJM_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJN_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJN_B Length: 99 >Chain A, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJO_A Length: 99 >Chain B, Protease NL4-3 [Human immunodeficiency virus 1] Sequence ID: 6PJO_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6W6T_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6W6T_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LDY_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LDY_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LDZ_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LDZ_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE0_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE0_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE1_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE1_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE2_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE2_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE3_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE3_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE4_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE4_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE5_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE5_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE6_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE6_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE7_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE7_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE8_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE8_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE9_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LE9_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEA_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEA_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEB_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEB_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEC_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEC_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LED_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LED_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEE_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEE_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEF_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEF_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEG_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEG_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEH_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEH_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEI_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7LEI_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9J_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9J_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9K_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9K_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9L_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9L_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9M_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9M_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9Q_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9Q_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9R_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9R_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9S_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9S_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9T_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9T_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9U_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9U_B Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57786.1 Length: 123 Range 1: 15 to 113 Score:197 bits(502), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP+MIGGIGGFIKVRQYD Sbjct 15 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPEMIGGIGGFIKVRQYD 74 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 75 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 113 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB82844.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GG+LKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGELKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44648.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44652.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44654.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44660.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44661.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIG+VLVGPTPVN+IGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGSVLVGPTPVNVIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL71127.1 Length: 118 Range 1: 4 to 102 Score:197 bits(501), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 4 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 63 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 64 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 102 >HIV-1 protease, partial [Human immunodeficiency virus 1] Sequence ID: BAA88354.1 Length: 100 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44589.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44607.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD44613.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:4e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVAIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80017.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP15088.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGF+KVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFVKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67561.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:5e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILI+ICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIKICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV54695.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAMGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67541.1 Length: 99 Range 1: 1 to 99 Score:197 bits(500), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTP+NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPINIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67450.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67452.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67545.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN28383.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20601.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEO27594.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLT IGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTHIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP43024.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA+GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAVGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG33266.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR96460.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR96467.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR96543.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55270.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61546.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17850.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV18144.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLT+IGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTKIGCTLNF 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH6_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH6_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH7_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH7_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH8_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH8_B Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGG+GGFIKVRQYD Sbjct 1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGVGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH0_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH0_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH1_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH1_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH2_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 6DH2_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9G_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9G_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9H_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9H_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9I_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9I_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9N_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9N_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9O_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9O_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9P_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9P_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9V_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9V_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9W_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9W_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9X_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9X_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9Z_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7M9Z_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MA0_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MA0_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MA1_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MA1_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MA2_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MA2_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA3_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA3_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA4_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA4_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA5_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA5_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA6_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA6_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA7_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA7_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA8_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA8_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA9_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MA9_B Length: 99 >Chain A, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MAA_A Length: 99 >Chain B, Protease [Human immunodeficiency virus type 1 (BRU ISOLATE)] Sequence ID: 7MAA_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAB_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAB_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAC_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAC_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAD_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAD_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAE_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAE_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAF_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAF_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAG_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAG_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAH_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAH_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAI_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAI_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAJ_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAJ_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAK_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAK_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAL_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAL_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAN_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAN_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAO_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 7MAO_B Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACR82068.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20714.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+ GQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVAGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42273.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMN+PGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNIPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12468.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWRRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ABA71185.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01732.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02011.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02026.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02090.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNL+TQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39598.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK09332.1 Length: 100 Range 1: 2 to 100 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 2 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 61 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 62 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 100 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAD39733.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF27878.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK12502.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACN56403.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17143.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:5e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL71130.1 Length: 118 Range 1: 4 to 102 Score:197 bits(501), Expect:5e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 4 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 63 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 64 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 102 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67536.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67559.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67564.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67611.1 Length: 99 >polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: BAB15989.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQ+PLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQQPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96073.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96074.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96075.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96080.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGH+AIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHEAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55240.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABM21826.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17130.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17435.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV18186.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMDLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABM21828.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+VT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPVVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55868.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55870.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTV+EEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVVEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99940.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGG+LKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGZLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL37766.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL37778.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP43548.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT++IGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAF18207.1 Length: 99 >polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAF18209.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19385.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGH+AIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHRAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >truncated pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AAF88499.1 Length: 154 Range 1: 1 to 99 Score:198 bits(504), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAM92580.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV IK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVAIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17938.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56068.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQY+ Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYE 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AAQ74934.1 Length: 115 Range 1: 1 to 99 Score:197 bits(500), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76815.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF05680.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG28686.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAL57506.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ68168.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV54885.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2R38_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2R38_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2R3W_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2R3W_B Length: 99 >Chain A, protease [Human immunodeficiency virus 1] Sequence ID: 3BC4_A Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2R3T_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2R3T_B Length: 99 >Chain A, Protease [Human immunodeficiency virus 1] Sequence ID: 2R43_A Length: 99 >Chain B, Protease [Human immunodeficiency virus 1] Sequence ID: 2R43_B Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABF58027.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABF58028.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABF58029.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABF58030.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABF58031.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGG+GGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGVGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >retropepsin [Human immunodeficiency virus 1] Sequence ID: NP_705926.1 Length: 99 >retropepsin [Human immunodeficiency virus 1] Sequence ID: YP_001856241.1 Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus type 1 (CLONE 12)] Sequence ID: 1HXB_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus type 1 (CLONE 12)] Sequence ID: 1HXB_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1ODW_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1ODW_B Length: 99 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91440.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF80909.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17282.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20074.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20433.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20617.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19527.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI++EICGHKA+GTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIMVEICGHKAVGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR86092.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR86093.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVNIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99354.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99414.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99418.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99462.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99621.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ KEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQJKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67455.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67457.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQI LWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQINLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96048.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHK IGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKVIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17318.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AIL92441.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVL+GPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILVEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACR82048.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP+NIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPINIIGRNLLTQLGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ACM47211.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19309.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61531.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19359.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06537.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06539.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06540.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+VTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: WVS23004.1 Length: 100 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67451.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIE+CGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEVCGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67448.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKM+GGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMVGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01744.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01782.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01828.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02232.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02273.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP+NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AAR89384.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99347.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99401.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00173.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00353.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99907.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIK+RQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKIRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99677.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00176.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01539.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPL+TIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLITIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67182.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42368.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67548.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17256.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17271.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV18109.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ADC34290.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:6e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98710.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:7e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+++GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVRVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >Chain A, NL4-3 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 6OOS_A Length: 99 >Chain B, NL4-3 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 6OOS_B Length: 99 >Chain C, NL4-3 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 6OOS_C Length: 99 >Chain D, NL4-3 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 6OOS_D Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLW+RPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNL+TQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00293.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQJGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99364.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99708.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01075.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMBLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67363.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAK67364.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55309.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56411.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAX49147.1 Length: 99 Range 1: 1 to 99 Score:196 bits(499), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABS31816.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKATGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55060.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA GTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKATGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol polyprotein, partial [Human immunodeficiency virus 1] Sequence ID: AAA91451.1 Length: 160 Range 1: 32 to 130 Score:198 bits(504), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 32 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 91 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 92 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 130 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAW24218.1 Length: 100 Range 1: 1 to 99 Score:196 bits(499), Expect:7e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+L+EICGHKAIGT+LVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLVEICGHKAIGTILVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99732.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99830.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILMEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55719.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN47674.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICG+KAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGYKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX38907.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76819.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV+IKIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVSIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00288.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLK+ALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKZALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP72907.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+V+IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPIVSIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB67174.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEE+NLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEVNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACR81980.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19082.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20442.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:94/99(95%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKA+GTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAVGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN47522.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17311.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHK IGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKTIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01470.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGF+KVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFLKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV20371.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39007.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILXEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39698.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG13240.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTXKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG13249.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55019.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACB29436.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17899.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKXGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99343.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99392.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99396.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99411.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99526.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQVKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17189.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QXLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >Chain A, PROTEIN (HIV-1 PROTEASE) [Human immunodeficiency virus 1] Sequence ID: 1BV9_A Length: 99 >Chain B, PROTEIN (HIV-1 PROTEASE) [Human immunodeficiency virus 1] Sequence ID: 1BV9_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1MER_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1MER_B Length: 99 >Chain A, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1MES_A Length: 99 >Chain B, HIV-1 PROTEASE [Human immunodeficiency virus 1] Sequence ID: 1MES_B Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVN+IGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNVIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56606.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKM GGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMXGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF27904.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76690.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99339.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99786.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99975.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01423.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTV+EEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVVEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF64198.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76696.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMTLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56241.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: CAC27862.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQTKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAQ98720.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56230.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QITIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80174.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPSNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39926.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAU95698.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAU95699.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+ IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF72430.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP43656.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQY+ Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYE 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACR82062.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:7e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQY+ Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYE 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP42245.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTI+IGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI+IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIVIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06543.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRW+PKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWRPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG36399.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG36406.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG36408.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG36410.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG36411.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEE+NLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG15079.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVXIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG18258.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAG18269.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAF43171.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06550.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ALS06552.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+VTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19690.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+LIEICGHKAIGTVL+GPTPVNIIGRNLLTQ GCTLNF Sbjct 61 QVLIEICGHKAIGTVLIGPTPVNIIGRNLLTQJGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56531.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQI LWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQIXLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >HIV-1 protease, partial [Human immunodeficiency virus 1] Sequence ID: BAA88355.1 Length: 100 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61565.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACB29412.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLV IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVEIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV55803.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55018.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLXGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV19140.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGT LVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTXLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17941.1 Length: 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: URX39122.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMDLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC12672.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17102.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMN PGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNXPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99297.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99302.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99320.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99326.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AET99336.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN38132.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN38226.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56191.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55119.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17744.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI IEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU00799.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU01191.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRN+LTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNILTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56240.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ACV17866.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQXKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52139.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAB52141.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRP+V+IKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPIVSIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAC61538.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT79877.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80255.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAT80286.1 Length: 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN47529.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM+LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAR96482.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+KIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 Q+L+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QVLVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN55225.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVT+K+GGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTVKVGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN38082.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQY+ Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYE 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABN47640.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:97/99(97%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQXKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQ GCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQJGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: AFH76562.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLE+MNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAP14504.1 Length: 115 Range 1: 7 to 105 Score:196 bits(499), Expect:8e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 7 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 66 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVL+GPTPVNIIGRNLLTQ+GCTLNF Sbjct 67 QILIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNF 105 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AEU02059.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQ+KEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQIKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPANIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: ABC48190.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:8e-63, Method:Compositional matrix adjust., Identities:95/99(96%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIK+GGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKA+GTVL+GPTPVNIIGRNLLTQ+GCTLNF Sbjct 61 QILIEICGHKAVGTVLIGPTPVNIIGRNLLTQLGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAN28517.1 Length: 99 >V-1 PROTEASE protein, partial [Human immunodeficiency virus 1] Sequence ID: CAB66132.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:9e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQ+TLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTP+NIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNF 99 >protease, partial [Human immunodeficiency virus 1] Sequence ID: AAV56379.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:9e-63, Method:Compositional matrix adjust., Identities:98/99(99%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEM LPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMELPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: UYP43566.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:9e-63, Method:Compositional matrix adjust., Identities:96/99(97%), Positives:98/99(98%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPG+WKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QI +EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QIJVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 >pol protein, partial [Human immunodeficiency virus 1] Sequence ID: ADC96109.1 Length: 99 Range 1: 1 to 99 Score:196 bits(498), Expect:9e-63, Method:Compositional matrix adjust., Identities:97/99(98%), Positives:99/99(100%), Gaps:0/99(0%) Query 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYD 60 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEE+NLPGRWKPKMIGGIGGFIKVRQYD Sbjct 1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEVNLPGRWKPKMIGGIGGFIKVRQYD 60 Query 61 QILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99 QIL+EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF Sbjct 61 QILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99