********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.
********************************************************************************
********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:
Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to
discover motifs in biopolymers",
Proceedings of the Second International Conference on Intelligent Systems
for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.
********************************************************************************
********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= script_results/housekeeping.fasta
CONTROL SEQUENCES= --none--
ALPHABET= ACGT
Sequence name Weight Length Sequence name Weight Length
------------- ------ ------ ------------- ------ ------
cds-WP_045855524.1 1.0000 100 cds-WP_045855526.1 1.0000 100
cds-WP_045855542.1 1.0000 100 efp 1.0000 100
rplI 1.0000 100 rpsR 1.0000 100
rpsF 1.0000 100 cds-WP_045855573.1 1.0000 100
cds-WP_045855582.1 1.0000 100 rpoD 1.0000 100
cds-WP_045855632.1 1.0000 100 cds-WP_052691783.1 1.0000 100
cds-WP_052691784.1 1.0000 100 cds-WP_045855636.1 1.0000 100
fusA 1.0000 100 cds-WP_045855668.1 1.0000 100
pcnB 1.0000 100 cds-WP_045855789.1 1.0000 100
cds-WP_052691813.1 1.0000 100 cds-WP_045855857.1 1.0000 100
cds-WP_045855936.1 1.0000 100 gshB 1.0000 100
cds-WP_045856028.1 1.0000 100 rho 1.0000 100
slmA 1.0000 100 rpmB 1.0000 100
rpmG 1.0000 100 rpoZ 1.0000 100
cds-WP_045856103.1 1.0000 100 cds-WP_045856109.1 1.0000 100
cds-WP_045856119.1 1.0000 100 cds-WP_045856218.1 1.0000 100
cds-WP_045856238.1 1.0000 100 cds-WP_045861029.1 1.0000 100
cds-WP_045856357.1 1.0000 100 atpD 1.0000 100
atpG 1.0000 100 atpA 1.0000 100
cds-WP_045856365.1 1.0000 100 cds-WP_045856368.1 1.0000 100
atpE 1.0000 100 atpB 1.0000 100
cds-WP_045856374.1 1.0000 100 cds-WP_045856380.1 1.0000 100
rpmH 1.0000 100 dnaN 1.0000 100
cds-WP_045856454.1 1.0000 100 polA 1.0000 100
cds-WP_045856570.1 1.0000 100 cds-WP_082087156.1 1.0000 100
cds-WP_052691868.1 1.0000 100 cds-WP_045856653.1 1.0000 100
cds-WP_045856744.1 1.0000 100 rpoH 1.0000 100
hpaR 1.0000 100 cds-WP_045856936.1 1.0000 100
cds-WP_045856963.1 1.0000 100 cds-WP_121495355.1 1.0000 100
cds-WP_045857004.1 1.0000 100 rimK 1.0000 100
nrdR 1.0000 100 nusB 1.0000 100
cds-WP_045857096.1 1.0000 100 holA 1.0000 100
cds-WP_045861136.1 1.0000 100 ychF 1.0000 100
cds-WP_045857227.1 1.0000 100 cds-WP_052691908.1 1.0000 100
cds-WP_045857303.1 1.0000 100 cds-WP_045861159.1 1.0000 100
rplM 1.0000 100 rpsI 1.0000 100
rpmE 1.0000 100 cds-WP_045857501.1 1.0000 100
cds-WP_052691921.1 1.0000 100 fusA_2 1.0000 100
cds-WP_045857535.1 1.0000 100 cds-WP_162926320.1 1.0000 100
cds-WP_052691926.1 1.0000 100 cds-WP_052691927.1 1.0000 100
cds-WP_045857560.1 1.0000 100 cds-WP_045857569.1 1.0000 100
cds-WP_045857585.1 1.0000 100 cds-WP_052691930.1 1.0000 100
cds-WP_045857588.1 1.0000 100 cds-WP_045857720.1 1.0000 100
cds-WP_045857755.1 1.0000 100 cds-WP_045857797.1 1.0000 100
greA 1.0000 100 nusA 1.0000 100
infB 1.0000 100 rpsO 1.0000 100
nhaR 1.0000 100 rpsU 1.0000 100
cds-WP_045861254.1 1.0000 100 murU 1.0000 100
cds-WP_045858068.1 1.0000 100 fis 1.0000 100
prmA 1.0000 100 cds-WP_045858223.1 1.0000 100
cds-WP_045858246.1 1.0000 100 rnt 1.0000 100
cds-WP_236074861.1 1.0000 100 cds-WP_045858406.1 1.0000 100
cds-WP_045858418.1 1.0000 100 cds-WP_045858432.1 1.0000 100
cds-WP_045858470.1 1.0000 100 greB 1.0000 100
cds-WP_045858501.1 1.0000 100 rpoS 1.0000 100
cds-WP_045858535.1 1.0000 100 cds-WP_045858556.1 1.0000 100
cds-WP_045858583.1 1.0000 100 cds-WP_045858585.1 1.0000 100
cds-WP_045858741.1 1.0000 100 cds-WP_045858767.1 1.0000 100
cds-WP_045858788.1 1.0000 100 pspC 1.0000 100
dnaX 1.0000 100 cds-WP_045858963.1 1.0000 100
cds-WP_045858974.1 1.0000 100 cds-WP_045858993.1 1.0000 100
iscR 1.0000 100 cds-WP_162926391.1 1.0000 100
pspF 1.0000 100 cds-WP_045859278.1 1.0000 100
cds-WP_045859322.1 1.0000 100 scpB 1.0000 100
cds-WP_052692071.1 1.0000 100 cds-WP_045859382.1 1.0000 100
cds-WP_045859431.1 1.0000 100 cds-WP_052692082.1 1.0000 100
cds-WP_045859472.1 1.0000 100 cds-WP_045859486.1 1.0000 100
cds-WP_162926402.1 1.0000 100 dnaQ 1.0000 100
cds-WP_052692096.1 1.0000 100 cds-WP_045859736.1 1.0000 100
cds-WP_045859773.1 1.0000 100 cds-WP_045859830.1 1.0000 100
infA 1.0000 100 mfd 1.0000 100
cds-WP_045859916.1 1.0000 100 lexA 1.0000 100
cysB 1.0000 100 cds-WP_045859992.1 1.0000 100
rpmF 1.0000 100 cds-WP_045860159.1 1.0000 100
cds-WP_052692125.1 1.0000 100 cds-WP_045860208.1 1.0000 100
cds-WP_045860292.1 1.0000 100 cds-WP_045860338.1 1.0000 100
cds-WP_045860340.1 1.0000 100 rplT 1.0000 100
rpmI 1.0000 100 infC 1.0000 100
rpsA 1.0000 100 cds-WP_082087201.1 1.0000 100
cds-WP_045860424.1 1.0000 100 cds-WP_082087105.1 1.0000 100
cds-WP_045860457.1 1.0000 100 rpoE 1.0000 100
rplS 1.0000 100 rpsP 1.0000 100
rho_2 1.0000 100 dnaE 1.0000 100
ilvY 1.0000 100 yciH 1.0000 100
tsf 1.0000 100 rpsB 1.0000 100
cds-WP_045860654.1 1.0000 100 rpsT 1.0000 100
rpmA 1.0000 100 rplU 1.0000 100
rplQ 1.0000 100 cds-WP_045860702.1 1.0000 100
rpsD 1.0000 100 rpsK 1.0000 100
rpsM 1.0000 100 rpmJ 1.0000 100
rplO 1.0000 100 rpmD 1.0000 100
rpsE 1.0000 100 rplR 1.0000 100
rplF 1.0000 100 rpsH 1.0000 100
rpsN 1.0000 100 rplE 1.0000 100
rplX 1.0000 100 rplN 1.0000 100
rpsQ 1.0000 100 rpmC 1.0000 100
rplP 1.0000 100 rpsC 1.0000 100
rplV 1.0000 100 rpsS 1.0000 100
rplB 1.0000 100 rplW 1.0000 100
rplD 1.0000 100 rplC 1.0000 100
rpsJ 1.0000 100 tuf 1.0000 100
fusA_3 1.0000 100 rpsG 1.0000 100
rpsL 1.0000 100 rpoC 1.0000 100
rpoB 1.0000 100 rplL 1.0000 100
rplJ 1.0000 100 rplA 1.0000 100
rplK 1.0000 100 nusG 1.0000 100
cds-WP_052692230.1 1.0000 100 dinB 1.0000 100
rimK_2 1.0000 100 cds-WP_045860848.1 1.0000 100
cds-WP_045861614.1 1.0000 100 cds-WP_052692312.1 1.0000 100
cds-WP_045861829.1 1.0000 100
********************************************************************************
********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.
command: meme script_results/housekeeping.fasta -dna -nmotifs 10 -minw 6
model: mod= zoops nmotifs= 10 evt= inf
objective function: em= E-value of product of p-values
starts= E-value of product of p-values
strands: +
width: minw= 6 maxw= 50
nsites: minsites= 2 maxsites= 219 wnsites= 0.8
theta: spmap= uni spfuzz= 0.5
em: prior= dirichlet b= 0.01 maxiter= 50
distance= 1e-05
trim: wg= 11 ws= 1 endgaps= yes
data: n= 21900 N= 219
sample: seed= 0 hsfrac= 0
searchsize= 21900 norand= no csites= 1000
Letter frequencies in dataset:
A 0.285 C 0.225 G 0.204 T 0.286
Background letter frequencies (from file dataset with add-one prior applied):
A 0.285 C 0.225 G 0.204 T 0.286
Background model order: 0
********************************************************************************
********************************************************************************
MOTIF GCGCMGGWAWHVBCS MEME-1 width = 15 sites = 14 llr = 169 E-value = 1.2e-001
********************************************************************************
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 Description
--------------------------------------------------------------------------------
Simplified A ::1:41:3a6421::
pos.-specific C 19:75::1::24496
probability G 919319a1::122:4
matrix T :::::::6:43141:
bits 2.3 *
2.1 *
1.8 * * * *
1.6 *** ** * *
Relative 1.4 **** ** * *
Entropy 1.1 **** ** * **
(17.5 bits) 0.9 **** ** ** **
0.7 ******* ** **
0.5 ********** **
0.2 ********** ****
0.0 ---------------
Multilevel GCGCCGGTAAACCCC
consensus GA A TTAT G
sequence CGG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------
cds-WP_045860848.1 76 6.41e-08 TAAATAAGTA GCGCCGGTAAATTCC TACGCTATAA
hpaR 86 7.62e-08 CAATGTTAGG GCGCAGGTAAAATCC
cds-WP_045860159.1 80 2.74e-07 GGACTTTTAA GCGCAGGTAACAGCG GCGCTT
dnaX 53 2.74e-07 TTACCCCTCT GCGCAGGTATAATCG CCTTTTTTCA
fusA_2 15 6.48e-07 TCAAAGCGCC GCGCCGGAAATCACG TTCGCCAACG
rpmH 1 1.15e-06 . GCGCAGGAAACCCTC ACATGACAAT
cds-WP_052691927.1 20 1.37e-06 CCGAAAAGTC GCGGCGGCATTCGCC TAGCGTAAAG
rpsM 26 1.63e-06 GCGATAAGAA GCGCGGGAAAGTTCC ACGAACTTAC
rplC 25 1.77e-06 GAGACATTAC CCGCCGGTATCGCCC AGGTAGCGGA
rpsP 26 2.64e-06 GTAATTTTAT GCGGCGGAAAGCGTC CAGGGGGTTG
cds-WP_162926391.1 4 2.64e-06 GGC GGGCCGGGATTCCCG GACGTGTTAT
cds-WP_045856963.1 61 2.84e-06 TGCTTGATGC GGGCAAGTAAACCCG TTACTCTCCG
rpsJ 28 4.06e-06 TAATCTTAAC GCGGGAGTAAAGTCG GCTGGGTTTA
rpoS 22 4.06e-06 CCGAAGGGGG GCAGCGGTATTGCCC AACCTGCTAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_045860848.1 6.4e-08 75_[+1]_10
hpaR 7.6e-08 85_[+1]
cds-WP_045860159.1 2.7e-07 79_[+1]_6
dnaX 2.7e-07 52_[+1]_33
fusA_2 6.5e-07 14_[+1]_71
rpmH 1.1e-06 [+1]_85
cds-WP_052691927.1 1.4e-06 19_[+1]_66
rpsM 1.6e-06 25_[+1]_60
rplC 1.8e-06 24_[+1]_61
rpsP 2.6e-06 25_[+1]_60
cds-WP_162926391.1 2.6e-06 3_[+1]_82
cds-WP_045856963.1 2.8e-06 60_[+1]_25
rpsJ 4.1e-06 27_[+1]_58
rpoS 4.1e-06 21_[+1]_64
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF GCGCMGGWAWHVBCS width=15 seqs=14
cds-WP_045860848.1 ( 76) GCGCCGGTAAATTCC 1
hpaR ( 86) GCGCAGGTAAAATCC 1
cds-WP_045860159.1 ( 80) GCGCAGGTAACAGCG 1
dnaX ( 53) GCGCAGGTATAATCG 1
fusA_2 ( 15) GCGCCGGAAATCACG 1
rpmH ( 1) GCGCAGGAAACCCTC 1
cds-WP_052691927.1 ( 20) GCGGCGGCATTCGCC 1
rpsM ( 26) GCGCGGGAAAGTTCC 1
rplC ( 25) CCGCCGGTATCGCCC 1
rpsP ( 26) GCGGCGGAAAGCGTC 1
cds-WP_162926391.1 ( 4) GGGCCGGGATTCCCG 1
cds-WP_045856963.1 ( 61) GGGCAAGTAAACCCG 1
rpsJ ( 28) GCGGGAGTAAAGTCG 1
rpoS ( 22) GCAGCGGTATTGCCC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 18834 bayes= 11.6156 E= 1.2e-001
-1045 -165 219 -1045
-1045 193 -51 -1045
-199 -1045 219 -1045
-1045 167 49 -1045
32 115 -51 -1045
-100 -1045 207 -1045
-1045 -1045 229 -1045
0 -165 -151 100
181 -1045 -1045 -1045
117 -1045 -1045 32
32 -7 -51 0
-41 93 7 -100
-199 67 7 32
-1045 193 -1045 -100
-1045 134 107 -1045
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 14 E= 1.2e-001
0.000000 0.071429 0.928571 0.000000
0.000000 0.857143 0.142857 0.000000
0.071429 0.000000 0.928571 0.000000
0.000000 0.714286 0.285714 0.000000
0.357143 0.500000 0.142857 0.000000
0.142857 0.000000 0.857143 0.000000
0.000000 0.000000 1.000000 0.000000
0.285714 0.071429 0.071429 0.571429
1.000000 0.000000 0.000000 0.000000
0.642857 0.000000 0.000000 0.357143
0.357143 0.214286 0.142857 0.285714
0.214286 0.428571 0.214286 0.142857
0.071429 0.357143 0.214286 0.357143
0.000000 0.857143 0.000000 0.142857
0.000000 0.571429 0.428571 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCGCMGGWAWHVBCS MEME-1 regular expression
--------------------------------------------------------------------------------
GCG[CG][CA]GG[TA]A[AT][ATC][CAG][CTG]C[CG]
--------------------------------------------------------------------------------
Time 21.93 secs.
********************************************************************************
********************************************************************************
MOTIF GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 width = 29 sites = 17 llr = 242 E-value = 1.4e+001
********************************************************************************
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 Description
--------------------------------------------------------------------------------
Simplified A :12:::2132311:2311::545:::1::
pos.-specific C 181:81132241482:5155211::9157
probability G 7138::433325116222441:112:821
matrix T 21522943241242:52512164981:42
bits 2.3
2.1
1.8 *
1.6 * *
Relative 1.4 *** * **
Entropy 1.1 * *** * ****
(20.6 bits) 0.9 ** *** ** **** *
0.7 ** *** ** ** * **** *
0.5 ** *** * *** ** * ******
0.2 ******** *******************
0.0 -----------------------------
Multilevel GCTGCTGCATCGCCGTCTCCATATTCGCC
consensus T GTT TGGGATT AGGGGCAT TT
sequence TT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------
cds-WP_045856365.1 64 1.18e-13 TGCGGTACGA GCTGTTTGAGCGTCGTCTCGATATTCGCC TCGCGTAG
atpG 12 3.92e-09 CATGAATGTC GCTGCTGTAACGCTGGTTCGACTTTCGTC GTGACCTATT
rnt 8 8.56e-09 TGATACC GCTGCTCGTCAATCATGGGCATTTTCGTC CGCTTTGCGA
rplN 6 2.69e-08 TTTTA GCTTCTTTTTCGCTGTGTTTAAATTCGCT TAGCGGTGCC
rplE 58 3.27e-08 AAAAGTTTAG GTTGCCGCTTCGCTAACTGCGTATTCGCC TGACTCACTT
cds-WP_045855542.1 7 3.61e-08 CCTGAC GCGGCTTCGGGGGCATCTCCCAGTTCAGC TTTGTTCTTC
rpsH 36 4.37e-08 GACGCTACGC GCCGCTGCATGGTCCGGACCATTTTCGGT CAACCATTTA
nusB 37 1.31e-07 TGTTATCTTG GCTGTTAACATTCCGGAGGCATATTCGTC TCCTTACTAT
greA 12 1.85e-07 GTATGGCATT GCGGTTCGGTAAGCCACTGGATGTGCGTC GTTTACAAGA
rplV 62 2.38e-07 CACCGGTACA TCGTCTGTTCTTTCGATTCGCAATTCGCT CCTTATTCTC
rpmE 4 2.58e-07 CGC GAAGCTGGAGACCCGAGAGTATTTGCGCC AAGCCACGAA
polA 28 2.58e-07 TAATTGCCTT TCGGCCAGCTATTCCTCCGCAAATTCGCT AGAATCCCCT
rpsR 38 3.04e-07 GTTGATTTTG GCTTCTTCGCGGACGTCGTCGTCTTCGCG GAAGACTTCT
cds-WP_045857227.1 6 5.71e-07 TTCGG GGAGCTTTCTCCCCGAATCGCAATTTGCC GTGACAAGGA
rplP 23 6.16e-07 CGCAGCTTCT TCGGCTTCGGCGAGGTTTCTTTTTTCCGC GATTTATTCG
rplB 63 7.15e-07 TTCCGAGTCT CTAGCTGAAGCTTCGTCGCCTTATTCCTC GCCTAACAG
cds-WP_045855632.1 46 1.47e-06 AACCACAAGC TCTTTTATGAAGCCGTCCCGCATGGCGTC ACGACTCACA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_045856365.1 1.2e-13 63_[+2]_8
atpG 3.9e-09 11_[+2]_60
rnt 8.6e-09 7_[+2]_64
rplN 2.7e-08 5_[+2]_66
rplE 3.3e-08 57_[+2]_14
cds-WP_045855542.1 3.6e-08 6_[+2]_65
rpsH 4.4e-08 35_[+2]_36
nusB 1.3e-07 36_[+2]_35
greA 1.9e-07 11_[+2]_60
rplV 2.4e-07 61_[+2]_10
rpmE 2.6e-07 3_[+2]_68
polA 2.6e-07 27_[+2]_44
rpsR 3e-07 37_[+2]_34
cds-WP_045857227.1 5.7e-07 5_[+2]_66
rplP 6.2e-07 22_[+2]_49
rplB 7.2e-07 62_[+2]_9
cds-WP_045855632.1 1.5e-06 45_[+2]_26
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF GCKGCTDBNNMGYCGWSTSSAWWTTCGYC width=29 seqs=17
cds-WP_045856365.1 ( 64) GCTGTTTGAGCGTCGTCTCGATATTCGCC 1
atpG ( 12) GCTGCTGTAACGCTGGTTCGACTTTCGTC 1
rnt ( 8) GCTGCTCGTCAATCATGGGCATTTTCGTC 1
rplN ( 6) GCTTCTTTTTCGCTGTGTTTAAATTCGCT 1
rplE ( 58) GTTGCCGCTTCGCTAACTGCGTATTCGCC 1
cds-WP_045855542.1 ( 7) GCGGCTTCGGGGGCATCTCCCAGTTCAGC 1
rpsH ( 36) GCCGCTGCATGGTCCGGACCATTTTCGGT 1
nusB ( 37) GCTGTTAACATTCCGGAGGCATATTCGTC 1
greA ( 12) GCGGTTCGGTAAGCCACTGGATGTGCGTC 1
rplV ( 62) TCGTCTGTTCTTTCGATTCGCAATTCGCT 1
rpmE ( 4) GAAGCTGGAGACCCGAGAGTATTTGCGCC 1
polA ( 28) TCGGCCAGCTATTCCTCCGCAAATTCGCT 1
rpsR ( 38) GCTTCTTCGCGGACGTCGTCGTCTTCGCG 1
cds-WP_045857227.1 ( 6) GGAGCTTTCTCCCCGAATCGCAATTTGCC 1
rplP ( 23) TCGGCTTCGGCGAGGTTTCTTTTTTCCGC 1
rplB ( 63) CTAGCTGAAGCTTCGTCGCCTTATTCCTC 1
cds-WP_045855632.1 ( 46) TCTTTTATGAAGCCGTCCCGCATGGCGTC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 29 n= 15768 bayes= 9.92531 E= 1.4e+001
-1073 -193 179 -28
-227 176 -179 -128
-69 -193 53 72
-1073 -1073 191 -28
-1073 176 -1073 -28
-1073 -93 -1073 163
-69 -93 79 30
-128 39 53 4
4 -35 53 -28
-69 -35 53 30
4 87 -21 -128
-128 -93 138 -28
-128 87 -79 30
-1073 176 -179 -70
-69 -35 167 -1073
4 -1073 -21 89
-128 106 21 -70
-128 -93 21 89
-1073 123 79 -128
-1073 106 79 -70
89 6 -79 -128
31 -193 -1073 104
72 -193 -79 30
-1073 -1073 -179 172
-1073 -1073 -21 153
-1073 206 -1073 -228
-227 -93 201 -1073
-1073 106 -21 30
-1073 165 -179 -28
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 29 nsites= 17 E= 1.4e+001
0.000000 0.058824 0.705882 0.235294
0.058824 0.764706 0.058824 0.117647
0.176471 0.058824 0.294118 0.470588
0.000000 0.000000 0.764706 0.235294
0.000000 0.764706 0.000000 0.235294
0.000000 0.117647 0.000000 0.882353
0.176471 0.117647 0.352941 0.352941
0.117647 0.294118 0.294118 0.294118
0.294118 0.176471 0.294118 0.235294
0.176471 0.176471 0.294118 0.352941
0.294118 0.411765 0.176471 0.117647
0.117647 0.117647 0.529412 0.235294
0.117647 0.411765 0.117647 0.352941
0.000000 0.764706 0.058824 0.176471
0.176471 0.176471 0.647059 0.000000
0.294118 0.000000 0.176471 0.529412
0.117647 0.470588 0.235294 0.176471
0.117647 0.117647 0.235294 0.529412
0.000000 0.529412 0.352941 0.117647
0.000000 0.470588 0.352941 0.176471
0.529412 0.235294 0.117647 0.117647
0.352941 0.058824 0.000000 0.588235
0.470588 0.058824 0.117647 0.352941
0.000000 0.000000 0.058824 0.941176
0.000000 0.000000 0.176471 0.823529
0.000000 0.941176 0.000000 0.058824
0.058824 0.117647 0.823529 0.000000
0.000000 0.470588 0.176471 0.352941
0.000000 0.705882 0.058824 0.235294
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCKGCTDBNNMGYCGWSTSSAWWTTCGYC MEME-2 regular expression
--------------------------------------------------------------------------------
[GT]C[TG][GT][CT]T[GT][CGT][AGT][TG][CA][GT][CT]CG[TA][CG][TG][CG][CG][AC][TA][AT]TTCG[CT][CT]
--------------------------------------------------------------------------------
Time 42.91 secs.
********************************************************************************
********************************************************************************
MOTIF CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 width = 47 sites = 4 llr = 155 E-value = 9.6e+001
********************************************************************************
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 Description
--------------------------------------------------------------------------------
Simplified A ::3::8::::333aa:3a:35:35::5:3::335a:::8:3:::3::
pos.-specific C 83358:83:a:3:::a:::535::8::8:53:3::8:8:::8::385
probability G 38553:338:553:::8:a:338::83:83::35::a3:8:3::3:5
matrix T :::::3:53:3:5::::::3:3:53333:3883::3::338:aa33:
bits 2.3 * *
2.1 * * * *
1.8 * *** ** * * **
1.6 * *** ** * * **
Relative 1.4 ** * * ** ****** * * * * ** * ***
Entropy 1.1 ** ** * ** ****** * ** ** * ***** * *** **
(56.1 bits) 0.9 ** **** ** ****** **** ** ** *********** **
0.7 ******* ** * ****** ***** ***** *********** **
0.5 ******************************** *********** **
0.2 ******************************** *********** **
0.0 -----------------------------------------------
Multilevel CGGCCACTGCGGTAACGAGCACGACGACGCTTAAACGCAGTCTTACC
consensus GCAGGTGCT AAA A ACGATTTGTAGCACG T GTTAG CTG
sequence C G TCG TGT T T G G
T T
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------------------------
cds-WP_045861136.1 47 1.24e-20 GTAAAACCCC GGGCGACGGCGGGAACGAGTCCGTCGGCGTTTGGATGCAGTCTTCCC CTTATGG
rplD 30 2.31e-18 ACCACGAGGG CCACCACTGCACTAACAAGCAGGACGACAGTTCGACGCATTGTTGCC AATTCATAGG
rpmC 27 5.66e-18 GCTTCTCAAC CGCGCTCTTCGAAAACGAGAACGACGACGCTTTAACGGTGACTTATG TTGAAAACAA
rpsQ 14 1.84e-17 CTACTTCGTT CGGGCAGCGCTGTAACGAGCGTATTTTTGCCAAAACGCAGTCTTTCG CAGGTGGAGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_045861136.1 1.2e-20 46_[+3]_7
rplD 2.3e-18 29_[+3]_24
rpmC 5.7e-18 26_[+3]_27
rpsQ 1.8e-17 13_[+3]_40
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS width=47 seqs=4
cds-WP_045861136.1 ( 47) GGGCGACGGCGGGAACGAGTCCGTCGGCGTTTGGATGCAGTCTTCCC 1
rplD ( 30) CCACCACTGCACTAACAAGCAGGACGACAGTTCGACGCATTGTTGCC 1
rpmC ( 27) CGCGCTCTTCGAAAACGAGAACGACGACGCTTTAACGGTGACTTATG 1
rpsQ ( 14) CGGGCAGCGCTGTAACGAGCGTATTTTTGCCAAAACGCAGTCTTTCG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 47 n= 11826 bayes= 11.5292 E= 9.6e+001
-865 173 29 -865
-865 15 188 -865
-19 15 129 -865
-865 115 129 -865
-865 173 29 -865
139 -865 -865 -19
-865 173 29 -865
-865 15 29 80
-865 -865 188 -19
-865 215 -865 -865
-19 -865 129 -19
-19 15 129 -865
-19 -865 29 80
181 -865 -865 -865
181 -865 -865 -865
-865 215 -865 -865
-19 -865 188 -865
181 -865 -865 -865
-865 -865 229 -865
-19 115 -865 -19
81 15 29 -865
-865 115 29 -19
-19 -865 188 -865
81 -865 -865 80
-865 173 -865 -19
-865 -865 188 -19
81 -865 29 -19
-865 173 -865 -19
-19 -865 188 -865
-865 115 29 -19
-865 15 -865 139
-19 -865 -865 139
-19 15 29 -19
81 -865 129 -865
181 -865 -865 -865
-865 173 -865 -19
-865 -865 229 -865
-865 173 29 -865
139 -865 -865 -19
-865 -865 188 -19
-19 -865 -865 139
-865 173 29 -865
-865 -865 -865 180
-865 -865 -865 180
-19 15 29 -19
-865 173 -865 -19
-865 115 129 -865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 47 nsites= 4 E= 9.6e+001
0.000000 0.750000 0.250000 0.000000
0.000000 0.250000 0.750000 0.000000
0.250000 0.250000 0.500000 0.000000
0.000000 0.500000 0.500000 0.000000
0.000000 0.750000 0.250000 0.000000
0.750000 0.000000 0.000000 0.250000
0.000000 0.750000 0.250000 0.000000
0.000000 0.250000 0.250000 0.500000
0.000000 0.000000 0.750000 0.250000
0.000000 1.000000 0.000000 0.000000
0.250000 0.000000 0.500000 0.250000
0.250000 0.250000 0.500000 0.000000
0.250000 0.000000 0.250000 0.500000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.250000 0.000000 0.750000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.250000 0.500000 0.000000 0.250000
0.500000 0.250000 0.250000 0.000000
0.000000 0.500000 0.250000 0.250000
0.250000 0.000000 0.750000 0.000000
0.500000 0.000000 0.000000 0.500000
0.000000 0.750000 0.000000 0.250000
0.000000 0.000000 0.750000 0.250000
0.500000 0.000000 0.250000 0.250000
0.000000 0.750000 0.000000 0.250000
0.250000 0.000000 0.750000 0.000000
0.000000 0.500000 0.250000 0.250000
0.000000 0.250000 0.000000 0.750000
0.250000 0.000000 0.000000 0.750000
0.250000 0.250000 0.250000 0.250000
0.500000 0.000000 0.500000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.750000 0.000000 0.250000
0.000000 0.000000 1.000000 0.000000
0.000000 0.750000 0.250000 0.000000
0.750000 0.000000 0.000000 0.250000
0.000000 0.000000 0.750000 0.250000
0.250000 0.000000 0.000000 0.750000
0.000000 0.750000 0.250000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.250000 0.250000 0.250000 0.250000
0.000000 0.750000 0.000000 0.250000
0.000000 0.500000 0.500000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif CGVSCACBGCDVDAACGAGHVBGWCGDCGBTTNRACGCAGTCTTNCS MEME-3 regular expression
--------------------------------------------------------------------------------
[CG][GC][GAC][CG][CG][AT][CG][TCG][GT]C[GAT][GAC][TAG]AAC[GA]AG[CAT][ACG][CGT][GA][AT][CT][GT][AGT][CT][GA][CGT][TC][TA][ACGT][AG]A[CT]G[CG][AT][GT][TA][CG]TT[ACGT][CT][CG]
--------------------------------------------------------------------------------
Time 63.30 secs.
********************************************************************************
********************************************************************************
MOTIF KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 width = 41 sites = 9 llr = 212 E-value = 7.5e+000
********************************************************************************
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 Description
--------------------------------------------------------------------------------
Simplified A :3671:::232:3::4::a797:2:1::1:::13:37:62:
pos.-specific C :32246834:31:143:1:1:1:336633a71:173361:6
probability G 3221241723:1::4261::::1373244:3:211::226:
matrix T 71::2:1:1348791:48:21291::221::97423:2124
bits 2.3
2.1 *
1.8 * *
1.6 * *
Relative 1.4 * * * * * * ***
Entropy 1.1 * *** * * * * * * ***
(34.0 bits) 0.9 * *** *** *** * * ** *** * * *
0.7 * * *** **** ******* **** **** * ** **
0.5 * ** *** ************** ********* * ** **
0.2 *****************************************
0.0 -----------------------------------------
Multilevel TAAACCCGCATTTTCAGTAAAATCGCCGGCCTTTCAACAGC
consensus GCCCGG CAGC A GCT T T GCGGCC G GATCCGGAT
sequence GG T GTA G A TT T T T
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------------------
cds-WP_045861159.1 2 1.82e-15 A TGCACCCGCTTTTTGATTAAAATGGCGGCCCTTTGAACGGT GTTGGATAAA
pspF 24 4.35e-13 CGAATTAGTG TCACAGCGGATTATGGGTAAAATGGGCCGCGTTGCTATAAC GATTGTAAGC
cds-WP_045856936.1 40 3.77e-12 TCTGTGGTAT TCCAGCTCAATTTTGCTCATAATCGGCCGCCTTTCCCCAAC GTGAGATGAC
rpoZ 10 8.55e-12 CTCTTGTCG TAACTGCGCAATTTGCGTACACTTCCTGCCCTTTTCAGAGC CGCCCAAAAG
scpB 29 1.21e-11 CCCATTCATG TGAAGGCGCGCGTTCAGTAAATGAGACTGCCTGATAACGGC AAGAATAACG
rplX 45 1.56e-11 TTCTAATAGA GAGACCGCGGTCTTCATGAAATTAGCCGGCGTGTCTCCAGT TCTCCTTAAA
mfd 40 1.99e-11 TATTTGCACC TAAGCCCGTGCTTTCATTAAAATCCCGCTCCTAACTCCCTC TTTCTGAGTA
rpoD 31 1.16e-10 ATTCTAGATA GCAACCCCATATACCGGTATAATCGCCGACCCTCCAATATT CACACTTAAT
cds-WP_045856103.1 32 1.95e-10 TTTAGCCAAT GTGATGCGCTCTATTCGTAATATGCGTTCCGTTACCAGTGT CGGTCGACCT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_045861159.1 1.8e-15 1_[+4]_58
pspF 4.3e-13 23_[+4]_36
cds-WP_045856936.1 3.8e-12 39_[+4]_20
rpoZ 8.6e-12 9_[+4]_50
scpB 1.2e-11 28_[+4]_31
rplX 1.6e-11 44_[+4]_15
mfd 2e-11 39_[+4]_20
rpoD 1.2e-10 30_[+4]_29
cds-WP_045856103.1 1.9e-10 31_[+4]_28
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY width=41 seqs=9
cds-WP_045861159.1 ( 2) TGCACCCGCTTTTTGATTAAAATGGCGGCCCTTTGAACGGT 1
pspF ( 24) TCACAGCGGATTATGGGTAAAATGGGCCGCGTTGCTATAAC 1
cds-WP_045856936.1 ( 40) TCCAGCTCAATTTTGCTCATAATCGGCCGCCTTTCCCCAAC 1
rpoZ ( 10) TAACTGCGCAATTTGCGTACACTTCCTGCCCTTTTCAGAGC 1
scpB ( 29) TGAAGGCGCGCGTTCAGTAAATGAGACTGCCTGATAACGGC 1
rplX ( 45) GAGACCGCGGTCTTCATGAAATTAGCCGGCGTGTCTCCAGT 1
mfd ( 40) TAAGCCCGTGCTTTCATTAAAATCCCGCTCCTAACTCCCTC 1
rpoD ( 31) GCAACCCCATATACCGGTATAATCGCCGACCCTCCAATATT 1
cds-WP_045856103.1 ( 32) GTGATGCGCTCTATTCGTAATATGCGTTCCGTTACCAGTGT 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 41 n= 13140 bayes= 9.81218 E= 7.5e+000
-982 -982 71 122
22 57 12 -136
96 -2 12 -982
122 -2 -87 -982
-136 98 12 -36
-982 130 112 -982
-982 179 -87 -136
-982 57 171 -982
-36 98 12 -136
22 -982 71 22
-36 57 -982 64
-982 -102 -87 144
22 -982 -982 122
-982 -102 -982 164
-982 98 112 -136
64 57 12 -982
-982 -982 145 64
-982 -102 -87 144
181 -982 -982 -982
122 -102 -982 -36
164 -982 -982 -136
122 -102 -982 -36
-982 -982 -87 164
-36 57 71 -136
-982 57 171 -982
-136 130 71 -982
-982 130 12 -36
-982 57 112 -36
-136 57 112 -136
-982 215 -982 -982
-982 157 71 -982
-982 -102 -982 164
-136 -982 12 122
22 -102 -87 64
-982 157 -87 -36
22 57 -982 22
122 57 -982 -982
-982 130 12 -36
96 -102 12 -136
-36 -982 145 -36
-982 130 -982 64
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 41 nsites= 9 E= 7.5e+000
0.000000 0.000000 0.333333 0.666667
0.333333 0.333333 0.222222 0.111111
0.555556 0.222222 0.222222 0.000000
0.666667 0.222222 0.111111 0.000000
0.111111 0.444444 0.222222 0.222222
0.000000 0.555556 0.444444 0.000000
0.000000 0.777778 0.111111 0.111111
0.000000 0.333333 0.666667 0.000000
0.222222 0.444444 0.222222 0.111111
0.333333 0.000000 0.333333 0.333333
0.222222 0.333333 0.000000 0.444444
0.000000 0.111111 0.111111 0.777778
0.333333 0.000000 0.000000 0.666667
0.000000 0.111111 0.000000 0.888889
0.000000 0.444444 0.444444 0.111111
0.444444 0.333333 0.222222 0.000000
0.000000 0.000000 0.555556 0.444444
0.000000 0.111111 0.111111 0.777778
1.000000 0.000000 0.000000 0.000000
0.666667 0.111111 0.000000 0.222222
0.888889 0.000000 0.000000 0.111111
0.666667 0.111111 0.000000 0.222222
0.000000 0.000000 0.111111 0.888889
0.222222 0.333333 0.333333 0.111111
0.000000 0.333333 0.666667 0.000000
0.111111 0.555556 0.333333 0.000000
0.000000 0.555556 0.222222 0.222222
0.000000 0.333333 0.444444 0.222222
0.111111 0.333333 0.444444 0.111111
0.000000 1.000000 0.000000 0.000000
0.000000 0.666667 0.333333 0.000000
0.000000 0.111111 0.000000 0.888889
0.111111 0.000000 0.222222 0.666667
0.333333 0.111111 0.111111 0.444444
0.000000 0.666667 0.111111 0.222222
0.333333 0.333333 0.000000 0.333333
0.666667 0.333333 0.000000 0.000000
0.000000 0.555556 0.222222 0.222222
0.555556 0.111111 0.222222 0.111111
0.222222 0.000000 0.555556 0.222222
0.000000 0.555556 0.000000 0.444444
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif KVAABSCSVDHTWTSVKTAAAATVSSCBSCSTTWCHMCAGY MEME-4 regular expression
--------------------------------------------------------------------------------
[TG][ACG][ACG][AC][CGT][CG]C[GC][CAG][AGT][TCA]T[TA]T[CG][ACG][GT]TA[AT]A[AT]T[CGA][GC][CG][CGT][GCT][GC]C[CG]T[TG][TA][CT][ACT][AC][CGT][AG][GAT][CT]
--------------------------------------------------------------------------------
Time 83.45 secs.
********************************************************************************
********************************************************************************
MOTIF ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 width = 45 sites = 5 llr = 163 E-value = 3.0e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 Description
--------------------------------------------------------------------------------
Simplified A 844:4::22::86a8666::2284:::2842:6266:2::6844:
pos.-specific C ::622:2:22::2:::::::82:2:8::2:42:::4:8:::::28
probability G 26:22:824282::242:2a:222::8::4:84:::a:26424:2
matrix T :::62a:6262:2:::248::4:2a228:24::84:::84::24:
bits 2.3 * *
2.1 * *
1.8 * * * * *
1.6 ** * * * * *
Relative 1.4 ** * * ** *** * ** *
Entropy 1.1 *** ** ** *** *** * ***** *** ****** *
(47.1 bits) 0.9 *** ** ** *** **** * ***** *********** *
0.7 **** ** *** *** **** * ***** *********** *
0.5 **** *** ************ * *********************
0.2 **** **************** * *********************
0.0 ---------------------------------------------
Multilevel AGCTATGTGTGAAAAAAATGCTAATCGTAACGATAAGCTGAAAAC
consensus GAACC CAACTGC GGGTG AAGC TTACGTCGATC AGTGGGTG
sequence GG GCG T T C G TA TC
T T G T
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------------------------------------
pspC 17 8.62e-17 AAGAATTGTT AGCGATGGCTGACAAAATGGAAAATCGTATTGATACGCTGGAGTC CATTTTGGAT
cds-WP_045858963.1 43 1.43e-16 ATTCGATATT GAACTTGTATGGAAAGAATGCTAGTCGTAGCGGTAAGCGGGATAC TCCCTGTGTG
rplJ 46 1.91e-16 GATCACAAAA AGATCTCAGCGAAAAAATTGCTAATCGTAACGATTAGATTAGGTC CTCATTTTAG
cds-WP_045859992.1 24 2.43e-15 TTAGTAGTAG AACTATGTGTTAAAGGTATGCCATTTGTAGTCGTTCGCTTAAACC GCGGCATAAG
cds-WP_045856454.1 33 2.93e-14 AAAATGCACA AGCTGTGTTGGATAAAGATGCGGCTCTACAAGAAAAGCTGAAAAG CCGCTAAGCA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
pspC 8.6e-17 16_[+5]_39
cds-WP_045858963.1 1.4e-16 42_[+5]_13
rplJ 1.9e-16 45_[+5]_10
cds-WP_045859992.1 2.4e-15 23_[+5]_32
cds-WP_045856454.1 2.9e-14 32_[+5]_23
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC width=45 seqs=5
pspC ( 17) AGCGATGGCTGACAAAATGGAAAATCGTATTGATACGCTGGAGTC 1
cds-WP_045858963.1 ( 43) GAACTTGTATGGAAAGAATGCTAGTCGTAGCGGTAAGCGGGATAC 1
rplJ ( 46) AGATCTCAGCGAAAAAATTGCTAATCGTAACGATTAGATTAGGTC 1
cds-WP_045859992.1 ( 24) AACTATGTGTTAAAGGTATGCCATTTGTAGTCGTTCGCTTAAACC 1
cds-WP_045856454.1 ( 33) AGCTGTGTTGGATAAAGATGCGGCTCTACAAGAAAAGCTGAAAAG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 45 n= 12264 bayes= 11.5113 E= 3.0e+003
149 -897 -3 -897
49 -897 156 -897
49 141 -897 -897
-897 -17 -3 107
49 -17 -3 -51
-897 -897 -897 180
-897 -17 197 -897
-51 -897 -3 107
-51 -17 97 -51
-897 -17 -3 107
-897 -897 197 -51
149 -897 -3 -897
107 -17 -897 -51
181 -897 -897 -897
149 -897 -3 -897
107 -897 97 -897
107 -897 -3 -51
107 -897 -897 48
-897 -897 -3 148
-897 -897 229 -897
-51 183 -897 -897
-51 -17 -3 48
149 -897 -3 -897
49 -17 -3 -51
-897 -897 -897 180
-897 183 -897 -51
-897 -897 197 -51
-51 -897 -897 148
149 -17 -897 -897
49 -897 97 -51
-51 83 -897 48
-897 -17 197 -897
107 -897 97 -897
-51 -897 -897 148
107 -897 -897 48
107 83 -897 -897
-897 -897 229 -897
-51 183 -897 -897
-897 -897 -3 148
-897 -897 156 48
107 -897 97 -897
149 -897 -3 -897
49 -897 97 -51
49 -17 -897 48
-897 183 -3 -897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 45 nsites= 5 E= 3.0e+003
0.800000 0.000000 0.200000 0.000000
0.400000 0.000000 0.600000 0.000000
0.400000 0.600000 0.000000 0.000000
0.000000 0.200000 0.200000 0.600000
0.400000 0.200000 0.200000 0.200000
0.000000 0.000000 0.000000 1.000000
0.000000 0.200000 0.800000 0.000000
0.200000 0.000000 0.200000 0.600000
0.200000 0.200000 0.400000 0.200000
0.000000 0.200000 0.200000 0.600000
0.000000 0.000000 0.800000 0.200000
0.800000 0.000000 0.200000 0.000000
0.600000 0.200000 0.000000 0.200000
1.000000 0.000000 0.000000 0.000000
0.800000 0.000000 0.200000 0.000000
0.600000 0.000000 0.400000 0.000000
0.600000 0.000000 0.200000 0.200000
0.600000 0.000000 0.000000 0.400000
0.000000 0.000000 0.200000 0.800000
0.000000 0.000000 1.000000 0.000000
0.200000 0.800000 0.000000 0.000000
0.200000 0.200000 0.200000 0.400000
0.800000 0.000000 0.200000 0.000000
0.400000 0.200000 0.200000 0.200000
0.000000 0.000000 0.000000 1.000000
0.000000 0.800000 0.000000 0.200000
0.000000 0.000000 0.800000 0.200000
0.200000 0.000000 0.000000 0.800000
0.800000 0.200000 0.000000 0.000000
0.400000 0.000000 0.400000 0.200000
0.200000 0.400000 0.000000 0.400000
0.000000 0.200000 0.800000 0.000000
0.600000 0.000000 0.400000 0.000000
0.200000 0.000000 0.000000 0.800000
0.600000 0.000000 0.000000 0.400000
0.600000 0.400000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.200000 0.800000 0.000000 0.000000
0.000000 0.000000 0.200000 0.800000
0.000000 0.000000 0.600000 0.400000
0.600000 0.000000 0.400000 0.000000
0.800000 0.000000 0.200000 0.000000
0.400000 0.000000 0.400000 0.200000
0.400000 0.200000 0.000000 0.400000
0.000000 0.800000 0.200000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ARMTNTGTNTGAAAARAWTGCNANTCGTADHGRTWMGCTKRADHC MEME-5 regular expression
--------------------------------------------------------------------------------
[AG][GA][CA][TCG][ACGT]T[GC][TAG][GACT][TCG][GT][AG][ACT]A[AG][AG][AGT][AT][TG]G[CA][TACG][AG][ACGT]T[CT][GT][TA][AC][AGT][CTA][GC][AG][TA][AT][AC]G[CA][TG][GT][AG][AG][AGT][ATC][CG]
--------------------------------------------------------------------------------
Time 103.06 secs.
********************************************************************************
********************************************************************************
MOTIF GCHWGCAGCATTYGTHHGATTCTTC MEME-6 width = 25 sites = 5 llr = 112 E-value = 3.1e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 Description
--------------------------------------------------------------------------------
Simplified A ::24::8::8::::24228:2::::
pos.-specific C :84::8:2a:::42:242:::6::a
probability G 82::a228:::::82::62:22:::
matrix T 2:46:::::2aa6:644::a62aa:
bits 2.3 *
2.1 * * *
1.8 * * ** * ***
1.6 * ** ** * * ***
Relative 1.4 ** ** ** ** * * ***
Entropy 1.1 ** ******** * ** ***
(32.2 bits) 0.9 ** *********** ** ***
0.7 ** *********** *** ****
0.5 *************************
0.2 *************************
0.0 -------------------------
Multilevel GCCTGCAGCATTTGTACGATTCTTC
consensus TGTA GGC T CCATTAG AG
sequence A GCAC GT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -------------------------
rplR 34 1.23e-12 GTCTACTTAT GCATGCAGCATTTCTTCGATTCTTC TTCATTCGGC
rpmA 6 1.24e-11 TTTAA GGCAGCAGCATTCGTAAGATACTTC GCAGTTCCAG
rplM 42 1.69e-11 CTGGTTTTCA GCTTGCAGCATTTGAATCATTTTTC CTTTAGAAAC
rpsK 26 1.29e-10 CATGCGCATT TCCAGGAGCATTCGGTTAATTCTTC ATTCGAAGCT
murU 26 3.79e-10 AATATACAGA GCTTGCGCCTTTTGTCCGGTGGTTC GATGAGCATT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
rplR 1.2e-12 33_[+6]_42
rpmA 1.2e-11 5_[+6]_70
rplM 1.7e-11 41_[+6]_34
rpsK 1.3e-10 25_[+6]_50
murU 3.8e-10 25_[+6]_50
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF GCHWGCAGCATTYGTHHGATTCTTC width=25 seqs=5
rplR ( 34) GCATGCAGCATTTCTTCGATTCTTC 1
rpmA ( 6) GGCAGCAGCATTCGTAAGATACTTC 1
rplM ( 42) GCTTGCAGCATTTGAATCATTTTTC 1
rpsK ( 26) TCCAGGAGCATTCGGTTAATTCTTC 1
murU ( 26) GCTTGCGCCTTTTGTCCGGTGGTTC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 25 n= 16644 bayes= 11.952 E= 3.1e+003
-897 -897 197 -51
-897 183 -3 -897
-51 83 -897 48
49 -897 -897 107
-897 -897 229 -897
-897 183 -3 -897
149 -897 -3 -897
-897 -17 197 -897
-897 215 -897 -897
149 -897 -897 -51
-897 -897 -897 180
-897 -897 -897 180
-897 83 -897 107
-897 -17 197 -897
-51 -897 -3 107
49 -17 -897 48
-51 83 -897 48
-51 -17 156 -897
149 -897 -3 -897
-897 -897 -897 180
-51 -897 -3 107
-897 141 -3 -51
-897 -897 -897 180
-897 -897 -897 180
-897 215 -897 -897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 25 nsites= 5 E= 3.1e+003
0.000000 0.000000 0.800000 0.200000
0.000000 0.800000 0.200000 0.000000
0.200000 0.400000 0.000000 0.400000
0.400000 0.000000 0.000000 0.600000
0.000000 0.000000 1.000000 0.000000
0.000000 0.800000 0.200000 0.000000
0.800000 0.000000 0.200000 0.000000
0.000000 0.200000 0.800000 0.000000
0.000000 1.000000 0.000000 0.000000
0.800000 0.000000 0.000000 0.200000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.400000 0.000000 0.600000
0.000000 0.200000 0.800000 0.000000
0.200000 0.000000 0.200000 0.600000
0.400000 0.200000 0.000000 0.400000
0.200000 0.400000 0.000000 0.400000
0.200000 0.200000 0.600000 0.000000
0.800000 0.000000 0.200000 0.000000
0.000000 0.000000 0.000000 1.000000
0.200000 0.000000 0.200000 0.600000
0.000000 0.600000 0.200000 0.200000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GCHWGCAGCATTYGTHHGATTCTTC MEME-6 regular expression
--------------------------------------------------------------------------------
[GT][CG][CTA][TA]G[CG][AG][GC]C[AT]TT[TC][GC][TAG][ATC][CTA][GAC][AG]T[TAG][CGT]TTC
--------------------------------------------------------------------------------
Time 122.42 secs.
********************************************************************************
********************************************************************************
MOTIF GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 width = 27 sites = 4 llr = 104 E-value = 4.8e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 Description
--------------------------------------------------------------------------------
Simplified A 3::::3a5:38:3::83::::5a::53
pos.-specific C ::53:5:3::3:58:3::::::::::8
probability G 8::5a3:3:8:a338::aa:8:::55:
matrix T :a53::::a:::::3:8::a35:a5::
bits 2.3 * * **
2.1 * * **
1.8 * * * * * *** **
1.6 * * * * * *** **
Relative 1.4 ** * * ** * ** **** **
Entropy 1.1 ** * * **** *** **** *****
(37.5 bits) 0.9 *** * * **** **************
0.7 ******* *******************
0.5 ***************************
0.2 ***************************
0.0 ---------------------------
Multilevel GTCGGCAATGAGCCGATGGTGAATGAC
consensus A TC A C AC AGTCA TT TGA
sequence T G G G
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------------------
cds-WP_162926320.1 38 1.93e-13 AATAGGCGCT ATCGGCAGTGAGCCGATGGTGAATGAA TATTCCATAC
cds-WP_045857004.1 14 5.52e-13 TAACGTTATG GTTGGGAATGAGCGGCTGGTTTATGGC CACGCAGTAT
rpsD 30 2.23e-12 TGGTTGTAGT GTCTGCAATGCGGCTAAGGTGTATTGC CGACAGCAGG
cds-WP_052691921.1 61 2.74e-12 ATTATTAACC GTTCGAACTAAGACGATGGTGAATTAC GCTTTAACGC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_162926320.1 1.9e-13 37_[+7]_36
cds-WP_045857004.1 5.5e-13 13_[+7]_60
rpsD 2.2e-12 29_[+7]_44
cds-WP_052691921.1 2.7e-12 60_[+7]_13
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF GTYBGVAVTGAGVCGATGGTGWATKRC width=27 seqs=4
cds-WP_162926320.1 ( 38) ATCGGCAGTGAGCCGATGGTGAATGAA 1
cds-WP_045857004.1 ( 14) GTTGGGAATGAGCGGCTGGTTTATGGC 1
rpsD ( 30) GTCTGCAATGCGGCTAAGGTGTATTGC 1
cds-WP_052691921.1 ( 61) GTTCGAACTAAGACGATGGTGAATTAC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 27 n= 16206 bayes= 11.9839 E= 4.8e+003
-19 -865 188 -865
-865 -865 -865 180
-865 115 -865 80
-865 15 129 -19
-865 -865 229 -865
-19 115 29 -865
181 -865 -865 -865
81 15 29 -865
-865 -865 -865 180
-19 -865 188 -865
139 15 -865 -865
-865 -865 229 -865
-19 115 29 -865
-865 173 29 -865
-865 -865 188 -19
139 15 -865 -865
-19 -865 -865 139
-865 -865 229 -865
-865 -865 229 -865
-865 -865 -865 180
-865 -865 188 -19
81 -865 -865 80
181 -865 -865 -865
-865 -865 -865 180
-865 -865 129 80
81 -865 129 -865
-19 173 -865 -865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 27 nsites= 4 E= 4.8e+003
0.250000 0.000000 0.750000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.500000 0.000000 0.500000
0.000000 0.250000 0.500000 0.250000
0.000000 0.000000 1.000000 0.000000
0.250000 0.500000 0.250000 0.000000
1.000000 0.000000 0.000000 0.000000
0.500000 0.250000 0.250000 0.000000
0.000000 0.000000 0.000000 1.000000
0.250000 0.000000 0.750000 0.000000
0.750000 0.250000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.250000 0.500000 0.250000 0.000000
0.000000 0.750000 0.250000 0.000000
0.000000 0.000000 0.750000 0.250000
0.750000 0.250000 0.000000 0.000000
0.250000 0.000000 0.000000 0.750000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.750000 0.250000
0.500000 0.000000 0.000000 0.500000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.500000 0.500000
0.500000 0.000000 0.500000 0.000000
0.250000 0.750000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GTYBGVAVTGAGVCGATGGTGWATKRC MEME-7 regular expression
--------------------------------------------------------------------------------
[GA]T[CT][GCT]G[CAG]A[ACG]T[GA][AC]G[CAG][CG][GT][AC][TA]GGT[GT][AT]AT[GT][AG][CA]
--------------------------------------------------------------------------------
Time 141.65 secs.
********************************************************************************
********************************************************************************
MOTIF AGCTGYSCSCGTTCG MEME-8 width = 15 sites = 6 llr = 92 E-value = 7.1e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 Description
--------------------------------------------------------------------------------
Simplified A 82:::::2::2::2:
pos.-specific C 2:a2:5375a:::8:
probability G :8:2a:723:8:::8
matrix T :::7:5::2::aa:2
bits 2.3 *
2.1 * * *
1.8 * * * **
1.6 ** * **** *
Relative 1.4 ** * * ******
Entropy 1.1 *** * * ******
(22.1 bits) 0.9 *** **** ******
0.7 ***************
0.5 ***************
0.2 ***************
0.0 ---------------
Multilevel AGCTGCGCCCGTTCG
consensus TC G
sequence
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- ---------------
rplN 36 3.41e-09 AAATTCGCTT AGCGGTGCCCGTTCG CAAATAGTTA
cds-WP_045856365.1 36 7.19e-09 CCGCTGTGCT AGCTGCGACCGTTCG TGTTGCGGTA
cds-WP_045858741.1 74 7.02e-08 AGGCGTCCGC AGCTGCGGGCGTTCT GTGTAATTGA
lexA 72 9.10e-08 TTAACCACCA AGCTGCGCCCATTAG ACTGGAGACA
cds-WP_045856218.1 66 9.83e-08 AAGTAAACCA CGCCGTCCGCGTTCG CCGTTACTTT
rplS 85 1.38e-07 CCGATGTATA AACTGTCCTCGTTCG G
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
rplN 3.4e-09 35_[+8]_50
cds-WP_045856365.1 7.2e-09 35_[+8]_50
cds-WP_045858741.1 7e-08 73_[+8]_12
lexA 9.1e-08 71_[+8]_14
cds-WP_045856218.1 9.8e-08 65_[+8]_20
rplS 1.4e-07 84_[+8]_1
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF AGCTGYSCSCGTTCG width=15 seqs=6
rplN ( 36) AGCGGTGCCCGTTCG 1
cds-WP_045856365.1 ( 36) AGCTGCGACCGTTCG 1
cds-WP_045858741.1 ( 74) AGCTGCGGGCGTTCT 1
lexA ( 72) AGCTGCGCCCATTAG 1
cds-WP_045856218.1 ( 66) CGCCGTCCGCGTTCG 1
rplS ( 85) AACTGTCCTCGTTCG 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 15 n= 18834 bayes= 12.0632 E= 7.1e+003
155 -43 -923 -923
-77 -923 203 -923
-923 215 -923 -923
-923 -43 -29 122
-923 -923 229 -923
-923 115 -923 81
-923 57 171 -923
-77 157 -29 -923
-923 115 71 -78
-923 215 -923 -923
-77 -923 203 -923
-923 -923 -923 180
-923 -923 -923 180
-77 189 -923 -923
-923 -923 203 -78
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 15 nsites= 6 E= 7.1e+003
0.833333 0.166667 0.000000 0.000000
0.166667 0.000000 0.833333 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.166667 0.166667 0.666667
0.000000 0.000000 1.000000 0.000000
0.000000 0.500000 0.000000 0.500000
0.000000 0.333333 0.666667 0.000000
0.166667 0.666667 0.166667 0.000000
0.000000 0.500000 0.333333 0.166667
0.000000 1.000000 0.000000 0.000000
0.166667 0.000000 0.833333 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.166667 0.833333 0.000000 0.000000
0.000000 0.000000 0.833333 0.166667
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif AGCTGYSCSCGTTCG MEME-8 regular expression
--------------------------------------------------------------------------------
AGCTG[CT][GC]C[CG]CGTTCG
--------------------------------------------------------------------------------
Time 160.72 secs.
********************************************************************************
********************************************************************************
MOTIF GGGVGAWATGACGC MEME-9 width = 14 sites = 5 llr = 78 E-value = 3.8e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 Description
--------------------------------------------------------------------------------
Simplified A :::22a6a::6:::
pos.-specific C :::4::::2:2a:a
probability G 8aa46::::a2:a:
matrix T 2:::2:4:8:::::
bits 2.3 ** * *
2.1 ** * ***
1.8 ** * * * ***
1.6 ** * * * ***
Relative 1.4 *** * * * ***
Entropy 1.1 *** * *** ***
(22.5 bits) 0.9 *** ***** ***
0.7 **************
0.5 **************
0.2 **************
0.0 --------------
Multilevel GGGCGAAATGACGC
consensus T GA T C C
sequence AT G
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- --------------
cds-WP_052692096.1 86 1.40e-09 CGAACATTTA GGGGGAAATGACGC T
holA 58 9.14e-09 GCCGGCAAGT GGGCGAAATGGCGC AACAATATGC
infA 48 7.42e-08 CACTCATTTA GGGCAAAATGCCGC CTCTCTAAAT
prmA 62 8.67e-08 TTGTGGCGTC GGGAGATACGACGC CACAAAAATT
cds-WP_082087156.1 57 1.82e-07 AATTCTTGTA TGGGTATATGACGC CTCCACTACT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_052692096.1 1.4e-09 85_[+9]_1
holA 9.1e-09 57_[+9]_29
infA 7.4e-08 47_[+9]_39
prmA 8.7e-08 61_[+9]_25
cds-WP_082087156.1 1.8e-07 56_[+9]_30
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF GGGVGAWATGACGC width=14 seqs=5
cds-WP_052692096.1 ( 86) GGGGGAAATGACGC 1
holA ( 58) GGGCGAAATGGCGC 1
infA ( 48) GGGCAAAATGCCGC 1
prmA ( 62) GGGAGATACGACGC 1
cds-WP_082087156.1 ( 57) TGGGTATATGACGC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 14 n= 19053 bayes= 12.147 E= 3.8e+003
-897 -897 197 -51
-897 -897 229 -897
-897 -897 229 -897
-51 83 97 -897
-51 -897 156 -51
181 -897 -897 -897
107 -897 -897 48
181 -897 -897 -897
-897 -17 -897 148
-897 -897 229 -897
107 -17 -3 -897
-897 215 -897 -897
-897 -897 229 -897
-897 215 -897 -897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 14 nsites= 5 E= 3.8e+003
0.000000 0.000000 0.800000 0.200000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.200000 0.400000 0.400000 0.000000
0.200000 0.000000 0.600000 0.200000
1.000000 0.000000 0.000000 0.000000
0.600000 0.000000 0.000000 0.400000
1.000000 0.000000 0.000000 0.000000
0.000000 0.200000 0.000000 0.800000
0.000000 0.000000 1.000000 0.000000
0.600000 0.200000 0.200000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif GGGVGAWATGACGC MEME-9 regular expression
--------------------------------------------------------------------------------
[GT]GG[CGA][GAT]A[AT]A[TC]G[ACG]CGC
--------------------------------------------------------------------------------
Time 179.65 secs.
********************************************************************************
********************************************************************************
MOTIF ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 width = 41 sites = 4 llr = 137 E-value = 8.5e+003
********************************************************************************
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 Description
--------------------------------------------------------------------------------
Simplified A a::5::3558::::3:35:3:::85353aa8:3::::::8:
pos.-specific C :a:333:::3:a:a3555::335:3:55::35:388:53:3
probability G ::333885::a:a:5:::55:8:3:5::::::5533a:838
matrix T ::8:5:::5::::::53:538:5:33:3:::533:::5:::
bits 2.3 * * *
2.1 * **** *
1.8 ** **** ** *
1.6 ** **** ** *
Relative 1.4 ** ** **** * ** *** * *
Entropy 1.1 *** *** ***** * ** * *** *** ***
(49.4 bits) 0.9 *** ********* * ** **** * **** *******
0.7 *** *********** ** **** * **** ********
0.5 *****************************************
0.2 *****************************************
0.0 -----------------------------------------
Multilevel ACTATGGAAAGCGCGCCAGGTGCAAGACAAACGGCCGCGAG
consensus GCCCAGTC ATACTACCTGCACA CTACGG TCGC
sequence GG C T T TT T TT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name Start P-value Site
------------- ----- --------- -----------------------------------------
cds-WP_045857755.1 5 6.17e-18 CGCA ACTGTGGATAGCGCATCAGATGTAAGCCAAATAGCCGTGGG TATGCGTTAT
nrdR 1 1.05e-16 . ACGCGGGGTAGCGCCCCATGTGCGCGCAAAACTCGCGCGAG AGGTGGAGCG
cds-WP_045861829.1 31 2.52e-16 AGCGAACACT ACTACGAGAAGCGCGCACTTTGCAATACAACCGTCCGCCAG CTAACAGACC
cds-WP_045860424.1 13 3.48e-15 CGTTCTGTAC ACTATCGAACGCGCGTTCGGCCTATAATAAATGGCGGTGAC TTTCTGCTGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_045857755.1 6.2e-18 4_[+10]_55
nrdR 1e-16 [+10]_59
cds-WP_045861829.1 2.5e-16 30_[+10]_29
cds-WP_045860424.1 3.5e-15 12_[+10]_47
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 in BLOCKS format
--------------------------------------------------------------------------------
BL MOTIF ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG width=41 seqs=4
cds-WP_045857755.1 ( 5) ACTGTGGATAGCGCATCAGATGTAAGCCAAATAGCCGTGGG 1
nrdR ( 1) ACGCGGGGTAGCGCCCCATGTGCGCGCAAAACTCGCGCGAG 1
cds-WP_045861829.1 ( 31) ACTACGAGAAGCGCGCACTTTGCAATACAACCGTCCGCCAG 1
cds-WP_045860424.1 ( 13) ACTATCGAACGCGCGTTCGGCCTATAATAAATGGCGGTGAC 1
//
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 41 n= 13140 bayes= 12.4184 E= 8.5e+003
181 -865 -865 -865
-865 215 -865 -865
-865 -865 29 139
81 15 29 -865
-865 15 29 80
-865 15 188 -865
-19 -865 188 -865
81 -865 129 -865
81 -865 -865 80
139 15 -865 -865
-865 -865 229 -865
-865 215 -865 -865
-865 -865 229 -865
-865 215 -865 -865
-19 15 129 -865
-865 115 -865 80
-19 115 -865 -19
81 115 -865 -865
-865 -865 129 80
-19 -865 129 -19
-865 15 -865 139
-865 15 188 -865
-865 115 -865 80
139 -865 29 -865
81 15 -865 -19
-19 -865 129 -19
81 115 -865 -865
-19 115 -865 -19
181 -865 -865 -865
181 -865 -865 -865
139 15 -865 -865
-865 115 -865 80
-19 -865 129 -19
-865 15 129 -19
-865 173 29 -865
-865 173 29 -865
-865 -865 229 -865
-865 115 -865 80
-865 15 188 -865
139 -865 29 -865
-865 15 188 -865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 41 nsites= 4 E= 8.5e+003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.250000 0.750000
0.500000 0.250000 0.250000 0.000000
0.000000 0.250000 0.250000 0.500000
0.000000 0.250000 0.750000 0.000000
0.250000 0.000000 0.750000 0.000000
0.500000 0.000000 0.500000 0.000000
0.500000 0.000000 0.000000 0.500000
0.750000 0.250000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.250000 0.250000 0.500000 0.000000
0.000000 0.500000 0.000000 0.500000
0.250000 0.500000 0.000000 0.250000
0.500000 0.500000 0.000000 0.000000
0.000000 0.000000 0.500000 0.500000
0.250000 0.000000 0.500000 0.250000
0.000000 0.250000 0.000000 0.750000
0.000000 0.250000 0.750000 0.000000
0.000000 0.500000 0.000000 0.500000
0.750000 0.000000 0.250000 0.000000
0.500000 0.250000 0.000000 0.250000
0.250000 0.000000 0.500000 0.250000
0.500000 0.500000 0.000000 0.000000
0.250000 0.500000 0.000000 0.250000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.750000 0.250000 0.000000 0.000000
0.000000 0.500000 0.000000 0.500000
0.250000 0.000000 0.500000 0.250000
0.000000 0.250000 0.500000 0.250000
0.000000 0.750000 0.250000 0.000000
0.000000 0.750000 0.250000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.500000 0.000000 0.500000
0.000000 0.250000 0.750000 0.000000
0.750000 0.000000 0.250000 0.000000
0.000000 0.250000 0.750000 0.000000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
Motif ACTVBGGRWAGCGCVYHMKDTGYAHDMHAAAYDBCCGYGAG MEME-10 regular expression
--------------------------------------------------------------------------------
AC[TG][ACG][TCG][GC][GA][AG][AT][AC]GCGC[GAC][CT][CAT][AC][GT][GAT][TC][GC][CT][AG][ACT][GAT][AC][CAT]AA[AC][CT][GAT][GCT][CG][CG]G[CT][GC][AG][GC]
--------------------------------------------------------------------------------
Time 198.57 secs.
********************************************************************************
********************************************************************************
SUMMARY OF MOTIFS
********************************************************************************
--------------------------------------------------------------------------------
Combined block diagrams: non-overlapping sites with p-value < 0.0001
--------------------------------------------------------------------------------
SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
------------- ---------------- -------------
cds-WP_045855524.1 7.80e-01 100
cds-WP_045855526.1 1.53e-01 100
cds-WP_045855542.1 2.45e-05 6_[+2(3.61e-08)]_27_[+8(4.42e-05)]_\
23
efp 1.14e-02 100
rplI 5.66e-01 100
rpsR 2.07e-03 37_[+2(3.04e-07)]_34
rpsF 3.66e-01 100
cds-WP_045855573.1 9.21e-01 100
cds-WP_045855582.1 2.45e-01 100
rpoD 1.22e-04 30_[+4(1.16e-10)]_29
cds-WP_045855632.1 8.00e-03 45_[+2(1.47e-06)]_26
cds-WP_052691783.1 9.30e-01 100
cds-WP_052691784.1 7.36e-02 100
cds-WP_045855636.1 2.34e-01 100
fusA 5.99e-01 100
cds-WP_045855668.1 9.40e-01 100
pcnB 1.35e-01 100
cds-WP_045855789.1 4.51e-02 100
cds-WP_052691813.1 1.36e-01 100
cds-WP_045855857.1 8.92e-01 100
cds-WP_045855936.1 6.09e-01 100
gshB 9.64e-01 100
cds-WP_045856028.1 2.40e-01 100
rho 9.95e-01 100
slmA 5.96e-01 100
rpmB 2.75e-01 100
rpmG 2.90e-01 100
rpoZ 5.64e-07 9_[+4(8.55e-12)]_50
cds-WP_045856103.1 6.07e-05 31_[+4(1.95e-10)]_28
cds-WP_045856109.1 9.02e-01 100
cds-WP_045856119.1 9.12e-01 100
cds-WP_045856218.1 2.29e-05 22_[+7(4.63e-05)]_16_[+8(9.83e-08)]_\
20
cds-WP_045856238.1 7.33e-01 100
cds-WP_045861029.1 8.58e-01 100
cds-WP_045856357.1 5.56e-01 100
atpD 3.04e-01 100
atpG 4.69e-04 11_[+2(3.92e-09)]_60
atpA 9.13e-02 100
cds-WP_045856365.1 9.73e-12 35_[+8(7.19e-09)]_13_[+2(1.18e-13)]_\
8
cds-WP_045856368.1 9.08e-02 100
atpE 8.64e-01 100
atpB 9.22e-02 100
cds-WP_045856374.1 4.09e-02 19_[+5(5.37e-05)]_36
cds-WP_045856380.1 2.57e-01 100
rpmH 8.34e-03 [+1(1.15e-06)]_21_[+5(4.52e-05)]_19
dnaN 9.29e-01 100
cds-WP_045856454.1 7.42e-10 32_[+5(2.93e-14)]_23
polA 7.96e-04 27_[+2(2.58e-07)]_44
cds-WP_045856570.1 9.83e-01 100
cds-WP_082087156.1 2.82e-02 56_[+9(1.82e-07)]_30
cds-WP_052691868.1 2.35e-01 100
cds-WP_045856653.1 5.05e-01 100
cds-WP_045856744.1 3.61e-01 100
rpoH 3.79e-01 86_[+9(9.81e-05)]
hpaR 8.84e-03 85_[+1(7.62e-08)]
cds-WP_045856936.1 1.79e-06 39_[+4(3.77e-12)]_20
cds-WP_045856963.1 4.80e-02 60_[+1(2.84e-06)]_25
cds-WP_121495355.1 8.04e-01 100
cds-WP_045857004.1 2.03e-06 13_[+7(5.52e-13)]_60
rimK 2.08e-01 2_[+5(8.86e-05)]_53
nrdR 1.22e-10 [+10(1.05e-16)]_59
nusB 1.46e-05 36_[+2(1.31e-07)]_35
cds-WP_045857096.1 3.54e-01 100
holA 4.46e-05 57_[+9(9.14e-09)]_29
cds-WP_045861136.1 3.95e-15 46_[+3(1.24e-20)]_7
ychF 1.89e-01 100
cds-WP_045857227.1 9.85e-04 5_[+2(5.71e-07)]_66
cds-WP_052691908.1 6.56e-01 100
cds-WP_045857303.1 2.88e-02 100
cds-WP_045861159.1 1.39e-09 1_[+4(1.82e-15)]_58
rplM 6.56e-09 41_[+6(1.69e-11)]_34
rpsI 1.89e-01 100
rpmE 1.84e-03 3_[+2(2.58e-07)]_68
cds-WP_045857501.1 2.78e-02 [+1(2.25e-05)]_60_[+9(5.58e-05)]_11
cds-WP_052691921.1 1.26e-05 60_[+7(2.74e-12)]_13
fusA_2 1.53e-03 14_[+1(6.48e-07)]_71
cds-WP_045857535.1 8.51e-01 100
cds-WP_162926320.1 8.64e-09 22_[+9(9.81e-05)]_1_[+7(1.93e-13)]_\
36
cds-WP_052691926.1 5.84e-01 100
cds-WP_052691927.1 2.33e-03 19_[+1(1.37e-06)]_66
cds-WP_045857560.1 5.73e-01 100
cds-WP_045857569.1 9.04e-02 100
cds-WP_045857585.1 5.66e-01 100
cds-WP_052691930.1 6.87e-01 100
cds-WP_045857588.1 2.36e-01 100
cds-WP_045857720.1 3.53e-01 100
cds-WP_045857755.1 3.57e-13 4_[+10(6.17e-18)]_55
cds-WP_045857797.1 8.81e-01 100
greA 1.76e-02 11_[+2(1.85e-07)]_60
nusA 4.31e-01 100
infB 7.07e-01 100
rpsO 2.41e-01 100
nhaR 1.04e-01 100
rpsU 5.27e-01 100
cds-WP_045861254.1 6.70e-01 100
murU 1.15e-05 25_[+6(3.79e-10)]_50
cds-WP_045858068.1 4.98e-01 100
fis 2.60e-02 100
prmA 8.44e-03 61_[+9(8.67e-08)]_25
cds-WP_045858223.1 9.74e-01 100
cds-WP_045858246.1 1.16e-01 100
rnt 5.52e-07 7_[+2(8.56e-09)]_64
cds-WP_236074861.1 2.87e-01 100
cds-WP_045858406.1 7.46e-02 100
cds-WP_045858418.1 6.90e-01 100
cds-WP_045858432.1 5.26e-01 100
cds-WP_045858470.1 1.87e-01 100
greB 9.83e-01 100
cds-WP_045858501.1 1.55e-02 50_[+5(3.08e-05)]_5
rpoS 2.33e-02 21_[+1(4.06e-06)]_64
cds-WP_045858535.1 9.96e-01 100
cds-WP_045858556.1 9.61e-01 100
cds-WP_045858583.1 9.59e-01 100
cds-WP_045858585.1 9.99e-01 100
cds-WP_045858741.1 2.48e-03 73_[+8(7.02e-08)]_12
cds-WP_045858767.1 1.68e-01 100
cds-WP_045858788.1 9.28e-01 100
pspC 4.02e-09 16_[+5(8.62e-17)]_39
dnaX 1.22e-02 52_[+1(2.74e-07)]_33
cds-WP_045858963.1 2.23e-09 42_[+5(1.43e-16)]_13
cds-WP_045858974.1 9.42e-01 100
cds-WP_045858993.1 4.44e-02 100
iscR 9.99e-01 100
cds-WP_162926391.1 3.18e-02 3_[+1(2.64e-06)]_82
pspF 1.87e-09 23_[+4(4.35e-13)]_36
cds-WP_045859278.1 9.65e-01 100
cds-WP_045859322.1 3.57e-01 100
scpB 5.53e-08 28_[+4(1.21e-11)]_31
cds-WP_052692071.1 1.32e-02 100
cds-WP_045859382.1 5.93e-01 100
cds-WP_045859431.1 7.73e-01 100
cds-WP_052692082.1 7.63e-01 100
cds-WP_045859472.1 6.72e-01 100
cds-WP_045859486.1 2.06e-01 100
cds-WP_162926402.1 3.71e-01 100
dnaQ 7.16e-01 100
cds-WP_052692096.1 5.86e-04 85_[+9(1.40e-09)]_1
cds-WP_045859736.1 7.83e-01 100
cds-WP_045859773.1 6.16e-01 100
cds-WP_045859830.1 8.09e-01 100
infA 3.56e-04 47_[+9(7.42e-08)]_39
mfd 9.75e-05 39_[+4(1.99e-11)]_20
cds-WP_045859916.1 7.97e-01 100
lexA 3.42e-02 71_[+8(9.10e-08)]_14
cysB 2.80e-01 100
cds-WP_045859992.1 4.11e-08 23_[+5(2.43e-15)]_32
rpmF 7.00e-01 100
cds-WP_045860159.1 6.38e-03 79_[+1(2.74e-07)]_6
cds-WP_052692125.1 9.95e-01 100
cds-WP_045860208.1 2.86e-01 100
cds-WP_045860292.1 1.94e-01 100
cds-WP_045860338.1 1.00e+00 100
cds-WP_045860340.1 8.24e-01 100
rplT 6.99e-02 1_[+8(2.41e-05)]_84
rpmI 6.61e-01 100
infC 7.99e-02 100
rpsA 3.16e-01 100
cds-WP_082087201.1 4.82e-01 100
cds-WP_045860424.1 7.72e-11 12_[+10(3.48e-15)]_47
cds-WP_082087105.1 7.11e-01 100
cds-WP_045860457.1 7.08e-01 100
rpoE 9.44e-01 100
rplS 2.78e-02 84_[+8(1.38e-07)]_1
rpsP 3.22e-02 25_[+1(2.64e-06)]_60
rho_2 8.10e-01 100
dnaE 5.06e-01 100
ilvY 9.84e-01 100
yciH 9.08e-01 100
tsf 5.24e-01 100
rpsB 9.80e-01 100
cds-WP_045860654.1 9.24e-01 100
rpsT 3.44e-02 100
rpmA 9.15e-08 5_[+6(1.24e-11)]_70
rplU 7.85e-01 100
rplQ 5.17e-01 100
cds-WP_045860702.1 8.87e-01 100
rpsD 8.50e-07 29_[+7(2.23e-12)]_44
rpsK 6.27e-06 25_[+6(1.29e-10)]_50
rpsM 7.20e-04 25_[+1(1.63e-06)]_60
rpmJ 5.30e-01 100
rplO 2.33e-01 100
rpmD 4.74e-01 100
rpsE 7.03e-01 100
rplR 1.88e-07 33_[+6(1.23e-12)]_42
rplF 9.20e-01 100
rpsH 9.84e-05 35_[+2(4.37e-08)]_36
rpsN 5.82e-01 100
rplE 1.47e-02 57_[+2(3.27e-08)]_14
rplX 4.49e-08 44_[+4(1.56e-11)]_15
rplN 3.32e-08 5_[+2(2.69e-08)]_1_[+8(3.41e-09)]_\
50
rpsQ 3.42e-12 13_[+3(1.84e-17)]_40
rpmC 1.37e-10 26_[+3(5.66e-18)]_27
rplP 2.33e-02 22_[+2(6.16e-07)]_49
rpsC 2.65e-01 100
rplV 1.45e-04 61_[+2(2.38e-07)]_10
rpsS 7.15e-02 100
rplB 3.52e-03 62_[+2(7.15e-07)]_9
rplW 6.88e-01 100
rplD 1.15e-11 29_[+3(2.31e-18)]_24
rplC 4.79e-04 24_[+1(1.77e-06)]_21_[+8(9.23e-05)]_\
25
rpsJ 2.02e-01 27_[+1(4.06e-06)]_58
tuf 4.67e-01 100
fusA_3 2.36e-01 50_[+7(3.15e-05)]_23
rpsG 7.49e-01 100
rpsL 6.94e-01 100
rpoC 9.31e-01 100
rpoB 3.79e-01 100
rplL 5.08e-01 100
rplJ 1.22e-08 45_[+5(1.91e-16)]_10
rplA 3.79e-01 100
rplK 3.54e-01 100
nusG 8.54e-01 100
cds-WP_052692230.1 6.86e-01 100
dinB 4.04e-01 100
rimK_2 6.68e-01 100
cds-WP_045860848.1 3.42e-03 75_[+1(6.41e-08)]_10
cds-WP_045861614.1 1.42e-01 100
cds-WP_052692312.1 6.70e-01 100
cds-WP_045861829.1 6.76e-09 30_[+10(2.52e-16)]_29
--------------------------------------------------------------------------------
********************************************************************************
********************************************************************************
Stopped because requested number of motifs (10) found.
********************************************************************************
CPU: kodomo
********************************************************************************