RID: 6E2U55ED013 Job Title:BAA17889:slr2001 [Synechocystis sp. PCC 6803] Program: BLASTP Query: R1AB_BCHK4 P0C6W3 (RNA-directed RNA polymerase) (Pol) (RdRp) (2.7.7.48) (nsp12) ID: lcl|Query_62846(amino acid) Length: 934 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Tylonycteris... NA 694007 1974 1974 100% 0.0 100.00 7119 P0C6W3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat coronavi... NA 389230 1963 1963 100% 0.0 99.57 7126 P0C6W1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Pipistrellus... NA 694008 1866 1866 100% 0.0 92.18 7182 P0C6W4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Betacoronavi... NA 1263720 1816 1816 100% 0.0 89.94 7078 K9N7C7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS cor... NA 442736 1428 1428 99% 0.0 71.86 7067 P0C6W2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat CoV 279/... NA 389167 1427 1427 99% 0.0 71.75 7079 P0C6V9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bat SARS CoV... NA 349344 1427 1427 99% 0.0 71.86 7071 P0C6W6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 694009 1426 1426 99% 0.0 71.75 7073 P0C6X7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Severe acute... NA 2697049 1412 1412 99% 0.0 70.97 7096 P0DTD1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rousettus ba... NA 694006 1395 1395 100% 0.0 69.38 6930 P0C6W5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11142 1367 1367 100% 0.0 68.31 7176 P0C6X9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 76344 1365 1365 100% 0.0 68.20 7124 P0C6X8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine respi... NA 233264 1360 1360 100% 0.0 68.66 7094 P0C6W8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine enter... NA 233262 1360 1360 100% 0.0 68.66 7094 P0C6W7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Murine hepat... NA 11144 1356 1356 100% 0.0 67.88 7180 P0C6Y0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11133 1353 1353 100% 0.0 68.34 7059 P0C6X0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 31631 1353 1353 100% 0.0 68.77 7095 P0C6X6.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Bovine coron... NA 11132 1350 1350 100% 0.0 68.34 7094 P0C6W9.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443240 1341 1341 100% 0.0 67.84 7152 P0C6X3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443239 1340 1340 100% 0.0 67.74 7182 P0C6X2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 443241 1340 1340 100% 0.0 67.74 7132 P0C6X4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11127 1184 1184 99% 0.0 61.28 6631 P0C6Y3.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Scotophilus ... NA 693999 1182 1182 100% 0.0 61.07 6793 P0C6W0.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine epid... NA 229032 1181 1181 100% 0.0 60.21 6781 P0C6Y4.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 11122 1180 1180 99% 0.0 61.17 6629 P0C6Y1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Avian infect... NA 160235 1180 1180 99% 0.0 61.17 6629 P0C6Y2.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Porcine tran... NA 11151 1139 1139 99% 0.0 60.13 6684 P0C6Y5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 11137 1139 1139 100% 0.0 58.72 6758 P0C6X1.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Human corona... NA 277944 1132 1132 100% 0.0 58.29 6729 P0C6X5.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Feline infec... NA 33734 1129 1129 99% 0.0 59.38 6709 Q98VG9.2 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Rat coronavi... NA 33740 498 498 32% 2e-169 75.57 307 Q9WQ77.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Turkey coron... NA 231430 458 458 32% 4e-154 71.34 306 Q9WQ76.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Berne virus NA 11156 123 123 53% 6e-27 24.31 6857 P0C6V7.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... Breda virus ... NA 360393 113 113 40% 5e-24 27.08 6733 P0C6V8.1 RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName:... White bream ... NA 766180 89.0 135 76% 1e-16 23.32 6872 Q008X6.1 Alignments: >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Tylonycteris bat coronavirus HKU4] Sequence ID: P0C6W3.1 Length: 7119 Range 1: 4421 to 5354 Score:1974 bits(5115), Expect:0.0, Method:Compositional matrix adjust., Identities:934/934(100%), Positives:934/934(100%), Gaps:0/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ Sbjct 4421 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4480 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS Sbjct 4481 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4540 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL Sbjct 4541 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4600 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY Sbjct 4601 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4660 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC Sbjct 4661 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 4720 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD Sbjct 4721 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4780 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD Sbjct 4781 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4840 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK Sbjct 4841 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4900 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT Sbjct 4901 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4960 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW Sbjct 4961 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5020 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE Sbjct 5021 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5080 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR Sbjct 5081 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5140 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS Sbjct 5141 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5200 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL Sbjct 5201 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5260 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH Sbjct 5261 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5320 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ Sbjct 5321 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5354 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat coronavirus (BtCoV/133/2005)] Sequence ID: P0C6W1.1 Length: 7126 Range 1: 4428 to 5361 Score:1963 bits(5085), Expect:0.0, Method:Compositional matrix adjust., Identities:930/934(99%), Positives:931/934(99%), Gaps:0/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ Sbjct 4428 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 4487 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS Sbjct 4488 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 4547 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL Sbjct 4548 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 4607 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY Sbjct 4608 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4667 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SYLMPVLSMTNCLAAETHKDCDFNKPLIEW LLEYDYTDYKIGLFNKYFK+WDQTYHPNC Sbjct 4668 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWLLLEYDYTDYKIGLFNKYFKHWDQTYHPNC 4727 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 VNC DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD Sbjct 4728 VNCGDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 4787 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 NIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD Sbjct 4788 VNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4847 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK Sbjct 4848 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 4907 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT Sbjct 4908 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 4967 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW Sbjct 4968 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 5027 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE Sbjct 5028 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 5087 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR Sbjct 5088 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 5147 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS Sbjct 5148 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 5207 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL Sbjct 5208 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5267 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH Sbjct 5268 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 5327 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ Sbjct 5328 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 5361 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Pipistrellus bat coronavirus HKU5] Sequence ID: P0C6W4.1 Length: 7182 Range 1: 4468 to 5401 Score:1866 bits(4833), Expect:0.0, Method:Compositional matrix adjust., Identities:861/934(92%), Positives:909/934(97%), Gaps:0/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKD+NFLNRVRGS VNAR+EPC+SGLTTDVV+RAFDICN+KA+VAGIGKYYKTNTCRFV+ Sbjct 4468 SKDSNFLNRVRGSIVNARIEPCASGLTTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4527 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VDDEGH+LDS+F+VKRHTM NYELEKRCYDL+KDCDAVA+HDFFIFDVDK KTPHIVRQ Sbjct 4528 VDDEGHRLDSFFVVKRHTMENYELEKRCYDLVKDCDAVAVHDFFIFDVDKVKTPHIVRQR 4587 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCC+ SYFDNKLWFDFVENP+VI VYHKL Sbjct 4588 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCDASYFDNKLWFDFVENPNVISVYHKL 4647 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 GERIRQA+LNTVK CD MVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY Sbjct 4648 GERIRQAVLNTVKFCDQMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 4707 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SYLMPVLSMTNCLAAETH+DCD KPLIEWPLLEYDYTDYKIGLF KYFK WDQ YHPNC Sbjct 4708 SYLMPVLSMTNCLAAETHRDCDLTKPLIEWPLLEYDYTDYKIGLFEKYFKXWDQQYHPNC 4767 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 VNC+DDRC+LHCANFNVLFSM LP TSFGPIVRKIFVDGVPF++SCGYHYKELGLVMNMD Sbjct 4768 VNCTDDRCVLHCANFNVLFSMTLPGTSFGPIVRKIFVDGVPFVISCGYHYKELGLVMNMD 4827 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 ++HRHRL+LKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD Sbjct 4828 VSLHRHRLSLKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 4887 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDFVVS+GFFKEGSSVTL+HFFFAQDGHAAITDYSYYAYNLPTM DIKQMLFCMEVVD+ Sbjct 4888 FYDFVVSKGFFKEGSSVTLRHFFFAQDGHAAITDYSYYAYNLPTMCDIKQMLFCMEVVDR 4947 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYES+SYQEQDELFA+TKRNVLPT Sbjct 4948 YFEIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESLSYQEQDELFAMTKRNVLPT 5007 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRG+TCVIGTTKFYGGW Sbjct 5008 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGSTCVIGTTKFYGGW 5067 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 DFMLKTLYKDV++PHLMGWDYPKCDRAMPNMCRI ASLILARKHSTCCTN+DRFYRLANE Sbjct 5068 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHSTCCTNTDRFYRLANE 5127 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALM ANGNTI+D Sbjct 5128 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNTIVDE 5187 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 E+KDMQF+LY+NVYRK PDPKFVD+YYAFLNKHFSMMILSDDGVVCYNSDYA KGY+AS Sbjct 5188 EVKDMQFELYVNVYRKSQPDPKFVDRYYAFLNKHFSMMILSDDGVVCYNSDYATKGYIAS 5247 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 IQNFKETLYYQNNVFMSEAKCWVET+L+KGPHEFCSQHTL+IKDGDDGYFLPYPDPSRIL Sbjct 5248 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLFIKDGDDGYFLPYPDPSRIL 5307 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 SAGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKHDD EYQNVFWVYLQYIEKLYKDLTGH Sbjct 5308 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHDDPEYQNVFWVYLQYIEKLYKDLTGH 5367 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 MLDSYSVMLCGD+SAKFWEE FYRDLY++PTTLQ Sbjct 5368 MLDSYSVMLCGDNSAKFWEESFYRDLYTAPTTLQ 5401 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Betacoronavirus England 1] Sequence ID: K9N7C7.1 Length: 7078 Range 1: 4378 to 5310 Score:1816 bits(4703), Expect:0.0, Method:Compositional matrix adjust., Identities:840/934(90%), Positives:899/934(96%), Gaps:1/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKD+NFL RVRGS VNAR+EPCSSGL+TDVV+RAFDICN+KA+VAGIGKYYKTNTCRFV+ Sbjct 4378 SKDSNFLKRVRGSIVNARIEPCSSGLSTDVVFRAFDICNYKAKVAGIGKYYKTNTCRFVE 4437 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +DD+GH LDSYF+VKRHTM NYELEK CYDLL+DCDAVA HDFFIFDVDK KTPHIVRQ Sbjct 4438 LDDQGHHLDSYFVVKRHTMENYELEKHCYDLLRDCDAVAPHDFFIFDVDKVKTPHIVRQR 4497 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LTEYTMMDLVYALRHFDQN+ EVLK+ILVKYGCC+ +YF+NKLWFDFVENPSVIGVYHKL Sbjct 4498 LTEYTMMDLVYALRHFDQNS-EVLKAILVKYGCCDVTYFENKLWFDFVENPSVIGVYHKL 4556 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 GER+RQA+LNTVK CDHMVK+GLVGVLTLDNQDLNGKWYDFGDFVITQPG+GVAIVDSYY Sbjct 4557 GERVRQAILNTVKFCDHMVKAGLVGVLTLDNQDLNGKWYDFGDFVITQPGSGVAIVDSYY 4616 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SYLMPVLSMT+CLAAETH+DCDFNKPLIEWPL EYD+TDYK+ LF KYFKYWDQTYH NC Sbjct 4617 SYLMPVLSMTDCLAAETHRDCDFNKPLIEWPLTEYDFTDYKVQLFEKYFKYWDQTYHANC 4676 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 VNC+DDRC+LHCANFNVLF+M +P T FGPIVRKIFVDGVPF+VSCGYHYKELGLVMNMD Sbjct 4677 VNCTDDRCVLHCANFNVLFAMTMPKTCFGPIVRKIFVDGVPFVVSCGYHYKELGLVMNMD 4736 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 ++HRHRL+LKELMMYAADPAMHIAS++A DLRT CFSVAALTTGLTFQTVRPGNFN+D Sbjct 4737 VSLHRHRLSLKELMMYAADPAMHIASSNAFLDLRTSCFSVAALTTGLTFQTVRPGNFNQD 4796 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDFVVS+GFFKEGSSVTLKHFFFAQDG+AAITDY+YY+YNLPTM DIKQMLFCMEVV+K Sbjct 4797 FYDFVVSKGFFKEGSSVTLKHFFFAQDGNAAITDYNYYSYNLPTMCDIKQMLFCMEVVNK 4856 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGCLNASEV+VNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFA+TKRNV+PT Sbjct 4857 YFEIYDGGCLNASEVVVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAMTKRNVIPT 4916 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW Sbjct 4917 MTQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 4976 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 DFMLKTLYKDV++PHLMGWDYPKCDRAMPNMCRI ASLILARKH TCCT DRFYRLANE Sbjct 4977 DFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGTCCTTRDRFYRLANE 5036 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALM ANGN I+D+ Sbjct 5037 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMGANGNKIVDK 5096 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 E+KDMQFDLY+NVYR PDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGY+A Sbjct 5097 EVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYIAG 5156 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 IQNFKETLYYQNNVFMSEAKCWVET+L+KGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL Sbjct 5157 IQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 5216 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 SAGCFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH+D EYQNVFWVYLQYIEKLYKDLTGH Sbjct 5217 SAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIEYQNVFWVYLQYIEKLYKDLTGH 5276 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 MLDSYSVMLCGD+SAKFWEE FYRDLYSSPTTLQ Sbjct 5277 MLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQ 5310 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS coronavirus HKU3] Sequence ID: P0C6W2.1 Length: 7067 Range 1: 4368 to 5295 Score:1428 bits(3697), Expect:0.0, Method:Compositional matrix adjust., Identities:669/931(72%), Positives:781/931(83%), Gaps:3/931(0%) Query 4 TNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDD 63 + FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D+ Sbjct 4368 STFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEK--VAGFAKFLKTNCCRFQEKDE 4424 Query 64 EGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTE 123 EG+ LDSYF+VKRHTMSNY+ E+ Y+L+K+C AVA+HDFF F VD PHI RQ LT+ Sbjct 4425 EGNLLDSYFVVKRHTMSNYQHEETIYNLIKECPAVAVHDFFKFRVDGDMVPHISRQRLTK 4484 Query 124 YTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGER 183 YTM DLVYALRHFD+ NC+ LK ILV Y CC+ +YF+ K W+DFVENP V+ VY LGER Sbjct 4485 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDNYFNKKDWYDFVENPDVLRVYANLGER 4544 Query 184 IRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL 243 +R+A+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4545 VRRALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4604 Query 244 MPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNC 303 MP+L++T LAAE+H D D KPL++W LL+YD+T+ ++ LF++YFKYWDQTYHPNC+NC Sbjct 4605 MPILTLTKALAAESHMDADLAKPLVKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINC 4664 Query 304 SDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNI 363 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+ Sbjct 4665 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4724 Query 364 HRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD 423 H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYD Sbjct 4725 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4784 Query 424 FVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFD 483 F VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4785 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4844 Query 484 IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQ 543 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQ Sbjct 4845 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 4904 Query 544 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 603 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4905 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4964 Query 604 LKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQ 663 LKT+Y DVESPHLMGWDYPKCDRAMPNM RI+ASLILARKHSTCC S RFYRLANECAQ Sbjct 4965 LKTVYSDVESPHLMGWDYPKCDRAMPNMLRIMASLILARKHSTCCNLSHRFYRLANECAQ 5024 Query 664 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIK 723 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ ++ Sbjct 5025 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5084 Query 724 DMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQN 783 ++Q LY +YR D +FVD++YA+L KHFSMMILSDD VVCYNS+YAA+G VASI+N Sbjct 5085 NLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5144 Query 784 FKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 843 FK LYYQNNVFMSEAKCW ET+L +GPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5145 FKAVLYYQNNVFMSEAKCWTETDLTRGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5204 Query 844 CFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLD 903 CFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5205 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5264 Query 904 SYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 YSVML D+++++WE FY +Y+ T LQ Sbjct 5265 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5295 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat CoV 279/2005] Sequence ID: P0C6V9.1 Length: 7079 Range 1: 4380 to 5307 Score:1427 bits(3694), Expect:0.0, Method:Compositional matrix adjust., Identities:668/931(72%), Positives:779/931(83%), Gaps:3/931(0%) Query 4 TNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDD 63 + FLNRV G S ARL PC +G +TDVVYRAFDI N RVAG K+ KTN CRF + D+ Sbjct 4380 STFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYN--ERVAGFAKFLKTNCCRFQEKDE 4436 Query 64 EGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTE 123 EG+ LDSYF+VKRHTMSNY+ E+ Y+L+K+C AVA+HDFF F VD PHI RQ LT+ Sbjct 4437 EGNLLDSYFVVKRHTMSNYQHEETIYNLVKECPAVAVHDFFKFRVDGDMVPHISRQRLTK 4496 Query 124 YTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGER 183 YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER Sbjct 4497 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 4556 Query 184 IRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL 243 +RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4557 VRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4616 Query 244 MPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNC 303 MP+L++T LAAE+H D D KPLI+W LL+YD+T+ ++ LF++YFKYWDQTYHPNC+NC Sbjct 4617 MPILTLTKALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINC 4676 Query 304 SDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNI 363 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+ Sbjct 4677 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4736 Query 364 HRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD 423 H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYD Sbjct 4737 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4796 Query 424 FVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFD 483 F VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4797 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4856 Query 484 IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQ 543 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQ Sbjct 4857 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDVLFAYTKRNVIPTITQ 4916 Query 544 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 603 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4917 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4976 Query 604 LKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQ 663 LKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKHSTCC S RFYRLANECAQ Sbjct 4977 LKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQ 5036 Query 664 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIK 723 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ ++ Sbjct 5037 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5096 Query 724 DMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQN 783 ++Q LY +YR D +FVD++YA+L KHFSMMILSDD VVCYNS+YAA+G VASI+N Sbjct 5097 NLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5156 Query 784 FKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 843 FK YYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5157 FKAVHYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5216 Query 844 CFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLD 903 CFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5217 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5276 Query 904 SYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 YSVML D+++++WE FY +Y+ T LQ Sbjct 5277 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bat SARS CoV Rp3/2004] Sequence ID: P0C6W6.1 Length: 7071 Range 1: 4372 to 5299 Score:1427 bits(3693), Expect:0.0, Method:Compositional matrix adjust., Identities:669/931(72%), Positives:779/931(83%), Gaps:3/931(0%) Query 4 TNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDD 63 + FLNRV G S ARL PC +G++TDVVYRAFDI N K VAG K+ KTN CRF + D+ Sbjct 4372 STFLNRVCGVSA-ARLTPCGTGISTDVVYRAFDIYNEK--VAGFAKFLKTNCCRFQEKDE 4428 Query 64 EGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTE 123 EG+ LDSYF+VKRHTMSNY+ E+ Y+L+KDC AVA+HDFF F VD PHI RQ LT+ Sbjct 4429 EGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTK 4488 Query 124 YTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGER 183 YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER Sbjct 4489 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 4548 Query 184 IRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL 243 +RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4549 VRQALLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4608 Query 244 MPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNC 303 MP+L++T LAAE+H D D KPLI+W LL+YD+T ++ LF++YFKYWDQTYHPNC+NC Sbjct 4609 MPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTAERLCLFDRYFKYWDQTYHPNCINC 4668 Query 304 SDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNI 363 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+ Sbjct 4669 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4728 Query 364 HRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD 423 H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYD Sbjct 4729 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4788 Query 424 FVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFD 483 F VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4789 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4848 Query 484 IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQ 543 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQ Sbjct 4849 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 4908 Query 544 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 603 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4909 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4968 Query 604 LKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQ 663 LKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKHSTCC S RFYRLANECAQ Sbjct 4969 LKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHSTCCNLSHRFYRLANECAQ 5028 Query 664 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIK 723 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ ++ Sbjct 5029 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5088 Query 724 DMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQN 783 ++Q LY +YR D +FV ++YA+L KHFSMMILSDD VVCYNS+YAA+G VASI+N Sbjct 5089 NLQHRLYECLYRNRDVDHEFVGEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5148 Query 784 FKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 843 FK LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5149 FKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5208 Query 844 CFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLD 903 CFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5209 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5268 Query 904 SYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 YSVML D+++++WE FY +Y+ T LQ Sbjct 5269 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5299 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome-related coronavirus] Sequence ID: P0C6X7.1 Length: 7073 Range 1: 4374 to 5301 Score:1426 bits(3692), Expect:0.0, Method:Compositional matrix adjust., Identities:668/931(72%), Positives:780/931(83%), Gaps:3/931(0%) Query 4 TNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDD 63 + FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D+ Sbjct 4374 STFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNEK--VAGFAKFLKTNCCRFQEKDE 4430 Query 64 EGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTE 123 EG+ LDSYF+VKRHTMSNY+ E+ Y+L+KDC AVA+HDFF F VD PHI RQ LT+ Sbjct 4431 EGNLLDSYFVVKRHTMSNYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTK 4490 Query 124 YTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGER 183 YTM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER Sbjct 4491 YTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGER 4550 Query 184 IRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYL 243 +RQ++L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDFV PG GV IVDSYYS L Sbjct 4551 VRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLL 4610 Query 244 MPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNC 303 MP+L++T LAAE+H D D KPLI+W LL+YD+T+ ++ LF++YFKYWDQTYHPNC+NC Sbjct 4611 MPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINC 4670 Query 304 SDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNI 363 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+ Sbjct 4671 LDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNL 4730 Query 364 HRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYD 423 H RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYD Sbjct 4731 HSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYD 4790 Query 424 FVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFD 483 F VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4791 FAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFD 4850 Query 484 IYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQ 543 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQ Sbjct 4851 CYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQ 4910 Query 544 MNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFM 603 MNLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW M Sbjct 4911 MNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNM 4970 Query 604 LKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQ 663 LKT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC S RFYRLANECAQ Sbjct 4971 LKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVLARKHNTCCNLSHRFYRLANECAQ 5030 Query 664 VLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIK 723 VLSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ ++ Sbjct 5031 VLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVR 5090 Query 724 DMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQN 783 ++Q LY +YR D +FVD++YA+L KHFSMMILSDD VVCYNS+YAA+G VASI+N Sbjct 5091 NLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKN 5150 Query 784 FKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAG 843 FK LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AG Sbjct 5151 FKAVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAG 5210 Query 844 CFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLD 903 CFVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5211 CFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLD 5270 Query 904 SYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 YSVML D+++++WE FY +Y+ T LQ Sbjct 5271 MYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5301 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like protease nsp3; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase nsp12; Short=Pol; Short=RdRp; AltName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Helicase nsp13; Short=Hel; AltName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Proofreading exoribonuclease nsp14; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; Contains: RecName: Full=2'-O-methyltransferase nsp16; AltName: Full=Non-structural protein 16; Short=nsp16 [Severe acute respiratory syndrome coronavirus 2] Sequence ID: P0DTD1.1 Length: 7096 Range 1: 4398 to 5324 Score:1412 bits(3655), Expect:0.0, Method:Compositional matrix adjust., Identities:660/930(71%), Positives:776/930(83%), Gaps:3/930(0%) Query 5 NFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVDDE 64 +FLNRV G S ARL PC +G +TDVVYRAFDI N K VAG K+ KTN CRF + D++ Sbjct 4398 SFLNRVCGVSA-ARLTPCGTGTSTDVVYRAFDIYNDK--VAGFAKFLKTNCCRFQEKDED 4454 Query 65 GHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEY 124 + +DSYF+VKRHT SNY+ E+ Y+LLKDC AVA HDFF F +D PHI RQ LT+Y Sbjct 4455 DNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKY 4514 Query 125 TMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERI 184 TM DLVYALRHFD+ NC+ LK ILV Y CC+ YF+ K W+DFVENP ++ VY LGER+ Sbjct 4515 TMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERV 4574 Query 185 RQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSYLM 244 RQA+L TV+ CD M +G+VGVLTLDNQDLNG WYDFGDF+ T PG+GV +VDSYYS LM Sbjct 4575 RQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLM 4634 Query 245 PVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCVNCS 304 P+L++T L AE+H D D KP I+W LL+YD+T+ ++ LF++YFKYWDQTYHPNCVNC Sbjct 4635 PILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL 4694 Query 305 DDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDFNIH 364 DDRCILHCANFNVLFS V P TSFGP+VRKIFVDGVPF+VS GYH++ELG+V N D N+H Sbjct 4695 DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLH 4754 Query 365 RHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDFYDF 424 RL+ KEL++YAADPAMH AS + L D RT CFSVAALT + FQTV+PGNFNKDFYDF Sbjct 4755 SSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDF 4814 Query 425 VVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDI 484 VS+GFFKEGSSV LKHFFFAQDG+AAI+DY YY YNLPTM DI+Q+LF +EVVDKYFD Sbjct 4815 AVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDC 4874 Query 485 YDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQM 544 YDGGC+NA++VIVNNLDKSAG PFNK+GKAR+YY+SMSY++QD LFA TKRNV+PTITQM Sbjct 4875 YDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQM 4934 Query 545 NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFML 604 NLKYAISAKNRARTVAGVSI STMTNRQ+HQK+LKS+AATRGAT VIGT+KFYGGW ML Sbjct 4935 NLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML 4994 Query 605 KTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANECAQV 664 KT+Y DVE+PHLMGWDYPKCDRAMPNM RI+ASL+LARKH+TCC+ S RFYRLANECAQV Sbjct 4995 KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQV 5054 Query 665 LSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDREIKD 724 LSE V+CGG YVKPGGTSSGDATTAYANSVFNI QA TANV+AL+S +GN I D+ +++ Sbjct 5055 LSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRN 5114 Query 725 MQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNF 784 +Q LY +YR D FV+++YA+L KHFSMMILSDD VVC+NS YA++G VASI+NF Sbjct 5115 LQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNF 5174 Query 785 KETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGC 844 K LYYQNNVFMSEAKCW ET+L KGPHEFCSQHT+ +K GDD +LPYPDPSRIL AGC Sbjct 5175 KSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGC 5234 Query 845 FVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDS 904 FVDDIVKTDGT+M+ER+VSLAIDAYPLTKH + EY +VF +YLQYI KL+ +LTGHMLD Sbjct 5235 FVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM 5294 Query 905 YSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 YSVML D+++++WE FY +Y+ T LQ Sbjct 5295 YSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ 5324 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=Leader protein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Rousettus bat coronavirus HKU9] Sequence ID: P0C6W5.1 Length: 6930 Range 1: 4234 to 5165 Score:1395 bits(3611), Expect:0.0, Method:Compositional matrix adjust., Identities:648/934(69%), Positives:772/934(82%), Gaps:2/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 ++D FLNRVRG+S ARL P SG+ D+V RAFDICN K VAG G + K N CR+ + Sbjct 4234 ARDECFLNRVRGTSGVARLVPLGSGVQPDIVLRAFDICNTK--VAGFGLHLKNNCCRYQE 4291 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +D +G +LDSYF+VKRHT SNY LE+RCY+ LKDC VA HDFF F+++ TPH+ R+ Sbjct 4292 LDADGTQLDSYFVVKRHTESNYLLEQRCYEKLKDCGVVARHDFFKFNIEGVMTPHVSRER 4351 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTM DLVY+LRHFD NNC+ LK ILV GCC YFD K W+D VENP +I VYH L Sbjct 4352 LTKYTMADLVYSLRHFDNNNCDTLKEILVLRGCCTADYFDRKDWYDPVENPDIIRVYHNL 4411 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 GE +R+A+L+ VKM D MV+ GL+GVLTLDNQDLNG+WYDFGDF+ GAGVA++D+YY Sbjct 4412 GETVRKAVLSAVKMADSMVEQGLIGVLTLDNQDLNGQWYDFGDFIEGPAGAGVAVMDTYY 4471 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 S MPV +MTN LAAE H D DF+KP W + +YDYT +K LF+KYFKYWD YHPNC Sbjct 4472 SLAMPVYTMTNMLAAECHVDGDFSKPKRVWDICKYDYTQFKYSLFSKYFKYWDMQYHPNC 4531 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 V C+DDRCILHCANFN+LFSMVLPNTSFGP+V+KI+VDGVPF+VS GYHY+ELG+VMN D Sbjct 4532 VACADDRCILHCANFNILFSMVLPNTSFGPLVQKIYVDGVPFVVSTGYHYRELGVVMNQD 4591 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 H RL+L+EL++YAADPAMH+A+++AL D RT C SVAA+TTG+TFQTV+PG FN+D Sbjct 4592 IRQHAQRLSLRELLVYAADPAMHVAASNALADKRTVCMSVAAMTTGVTFQTVKPGQFNED 4651 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FY+F V GFFKEGS+++ KHFF+AQDG+AAI+DY YY YNLPTM DIKQ+LF +EVVDK Sbjct 4652 FYNFAVKCGFFKEGSTISFKHFFYAQDGNAAISDYDYYRYNLPTMCDIKQLLFSLEVVDK 4711 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YFD YDGGCL AS+V+V N DKSAG PFNKFGKAR+YYES+SY +QDELFA TKRNVLPT Sbjct 4712 YFDCYDGGCLQASQVVVANYDKSAGFPFNKFGKARLYYESLSYADQDELFAYTKRNVLPT 4771 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 ITQMNLKYAISAKNRARTVAGVSI STMTNRQ+HQKMLKS+AA RGA+ VIGTTKFYGGW Sbjct 4772 ITQMNLKYAISAKNRARTVAGVSIASTMTNRQFHQKMLKSIAAARGASVVIGTTKFYGGW 4831 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 + ML+TL + VE+PHLMGWDYPKCDRAMPN+ RI ASLILARKH+TCC S+RFYRLANE Sbjct 4832 NRMLRTLCEGVENPHLMGWDYPKCDRAMPNLLRIFASLILARKHATCCNASERFYRLANE 4891 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE VLCGGG+YVKPGGTSSGD+TTAYANSVFNI QA +AN++ +S +GN I Sbjct 4892 CAQVLSEMVLCGGGFYVKPGGTSSGDSTTAYANSVFNICQAVSANLNTFLSIDGNKIYTT 4951 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 ++++Q LY+ +YR D + V YY +L KHFSMMILSDDGVVCYN+DYA KGYVA Sbjct 4952 YVQELQRRLYLGIYRSNTVDNELVLDYYNYLRKHFSMMILSDDGVVCYNADYAQKGYVAD 5011 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 IQ FKE LY+QNNVFMSE+KCWVE ++ KGPHEFCSQHT+ + + +LPYPDPSRIL Sbjct 5012 IQGFKELLYFQNNVFMSESKCWVEPDITKGPHEFCSQHTMLVDMKGEQVYLPYPDPSRIL 5071 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 AGCFVDD++KTDGT+MMERYVSLAIDAYPLTKH D EYQNVFW YLQYI+KL+++LTGH Sbjct 5072 GAGCFVDDLLKTDGTLMMERYVSLAIDAYPLTKHPDPEYQNVFWCYLQYIKKLHEELTGH 5131 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LD+YSVML D+++K+WE FY ++Y TLQ Sbjct 5132 LLDTYSVMLASDNASKYWEVEFYENMYMESATLQ 5165 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease nsp15; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain A59] Sequence ID: P0C6X9.1 Length: 7176 Range 1: 4455 to 5382 Score:1367 bits(3539), Expect:0.0, Method:Compositional matrix adjust., Identities:638/934(68%), Positives:776/934(83%), Gaps:6/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNR+RG+SVNARL PC+SGL TDV RAFDICN A AGIG YYK N CRF + Sbjct 4455 SKDTNFLNRIRGTSVNARLVPCASGLDTDVQLRAFDICN--ANRAGIGLYYKVNCCRFQR 4512 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD++G+KLD +F+VKR + Y EK CY+L K+C VA H+FF FDV+ ++ PHIVR+ Sbjct 4513 VDEDGNKLDKFFVVKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKD 4572 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 L+++TM+DL YALRHFD+N+C LK IL+ Y CE+SYF K W+DFVENP +I VY KL Sbjct 4573 LSKFTMLDLCYALRHFDRNDCSTLKEILLTYAECEESYFQKKDWYDFVENPDIINVYKKL 4632 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+LNT K D +V++GLVGVLTLDNQDL G+WYDFGDFV T PG GVA+ DSYY Sbjct 4633 GPIFNRALLNTAKFADALVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYY 4692 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L +E N E+ L++YD+TD+K+ LF KYFK+W TYHPN Sbjct 4693 SYMMPMLTMCHALDSELF----VNGTYREFDLVQYDFTDFKLELFTKYFKHWSMTYHPNT 4748 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 C DDRCI+HCANFN+LFSMVLP T FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4749 CECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMD 4808 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4809 VDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4868 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FY+F++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV+K Sbjct 4869 FYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNK 4928 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IY+GGC+ A++VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4929 YFEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4988 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4989 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 5048 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV+SP LMGWDYPKCDRAMPN+ RI++SL+LARKH +CC+++DRFYRLANE Sbjct 5049 DDMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANE 5108 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV +LM+ NG+ I D Sbjct 5109 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDL 5168 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+++Q LY NVYR DP FV +YY FLNKHFSMMILSDDGVVCYNS++A+KGY+A+ Sbjct 5169 SIRELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIAN 5228 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 I F++ LYYQNNVFMSEAKCWVET++EKGPHEFCSQHT+ +K D +LPYPDPSRIL Sbjct 5229 ISAFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRIL 5288 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQNVF VYL+YI+KLY DL Sbjct 5289 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQ 5348 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y LQ Sbjct 5349 ILDSYSVILSTCDGQKFTDETFYKNMYLRSAVLQ 5382 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Murine hepatitis virus strain 2] Sequence ID: P0C6X8.1 Length: 7124 Range 1: 4403 to 5330 Score:1365 bits(3534), Expect:0.0, Method:Compositional matrix adjust., Identities:637/934(68%), Positives:775/934(82%), Gaps:6/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SVNARL PC+SGL TDV RAFDICN A AGIG YYK N CRF + Sbjct 4403 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICN--ANRAGIGLYYKVNCCRFQR 4460 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 D++G+ LD +F++KR + Y EK CY+L K+C VA H+FF FDV+ ++ PHIVR+ Sbjct 4461 ADEDGNTLDKFFVIKRTNLEVYNKEKECYELTKECGVVAEHEFFTFDVEGSRVPHIVRKD 4520 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 L++YTM+DL YALRHFD+N+C LK IL+ Y C++SYF K W+DFVEN +I VY KL Sbjct 4521 LSKYTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENSDIINVYKKL 4580 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+LNT K D +V++GLVGVLTLDNQDL G+WYDFGDFV T PG GVA+ DSYY Sbjct 4581 GPIFNRALLNTAKFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPGCGVAVADSYY 4640 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L +E N E+ L++YD+TD+K+ LFNKYFKYW TYHPN Sbjct 4641 SYMMPMLTMCHALDSELF----INGTYREFDLVQYDFTDFKLELFNKYFKYWSMTYHPNT 4696 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 C DDRCI+HCANFN+LFSMVLP T FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4697 CECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMD 4756 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4757 VDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4816 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FY+F++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV+K Sbjct 4817 FYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVNK 4876 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGC+ A++VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4877 YFEIYDGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEVYAYTKRNVLPT 4936 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4937 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4996 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV+SP LMGWDYPKCDRAMPN+ RI++SL+LARKH +CC+++DRFYRLANE Sbjct 4997 DDMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIISSLVLARKHDSCCSHTDRFYRLANE 5056 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV +LM+ NG+ I D Sbjct 5057 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDL 5116 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+++Q LY NVYR DP FV++YY FLNKHFSMMILSDDGVVCYNS++A+KGY+A+ Sbjct 5117 SIRELQKRLYSNVYRADHVDPAFVNEYYEFLNKHFSMMILSDDGVVCYNSEFASKGYIAN 5176 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 I F++ LYYQNNVFMSEAKCWVET++EKGPHEFCSQHT+ +K D +LPYPDPSRIL Sbjct 5177 ISAFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRIL 5236 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQNVF VYL+YI+KLY DL Sbjct 5237 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQ 5296 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5297 ILDSYSVILSTCDGQKFTDETFYKNMYLRSAVMQ 5330 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine respiratory coronavirus (strain 98TXSF-110-LUN)] Sequence ID: P0C6W8.1 Length: 7094 Range 1: 4370 to 5297 Score:1360 bits(3520), Expect:0.0, Method:Compositional matrix adjust., Identities:642/935(69%), Positives:771/935(82%), Gaps:8/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SV+ARL PC+SGL+TDV RAFDICN A VAGIG + K N CRF + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD+ G KLD +F+VKR ++ Y E CY+ +KDC VA HDFF FDV+ ++ PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTM+DL YALRHFD+N+C +L IL Y CEQSYF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+++ + D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L E + N + L++YD+TDYK+ LFNKYFK+W YHPN Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 V+C DDRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL+DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDF++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC+ SDRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALMS NGN I D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+ +Q LY +VYR + D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGY+A+ Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 839 I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K DGDD Y LPYPDPSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPDPSRI 5202 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 L AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGN 5262 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine enteric coronavirus (strain 98TXSF-110-ENT)] Sequence ID: P0C6W7.1 Length: 7094 Range 1: 4370 to 5297 Score:1360 bits(3520), Expect:0.0, Method:Compositional matrix adjust., Identities:642/935(69%), Positives:771/935(82%), Gaps:8/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SV+ARL PC+SGL+TDV RAFDICN A VAGIG + K N CRF + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD+ G KLD +F+VKR ++ Y E CY+ +KDC VA HDFF FDV+ ++ PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTM+DL YALRHFD+N+C +L IL Y CEQSYF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+++ + D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L E + N + L++YD+TDYK+ LFNKYFK+W YHPN Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 V+C DDRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL+DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDF++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC+ SDRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALMS NGN I D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+ +Q LY +VYR + D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGY+A+ Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 839 I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K DGDD Y LPYPDPSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPDPSRI 5202 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 L AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLGN 5262 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=nsp16 [Murine hepatitis virus strain JHM] Sequence ID: P0C6Y0.1 Length: 7180 Range 1: 4461 to 5388 Score:1356 bits(3509), Expect:0.0, Method:Compositional matrix adjust., Identities:634/934(68%), Positives:773/934(82%), Gaps:6/934(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SVNARL PC+SGL TDV RAFDICN A AGIG YYK N RF + Sbjct 4461 SKDTNFLNRVRGTSVNARLVPCASGLDTDVQLRAFDICN--ANRAGIGLYYKVNCFRFQR 4518 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD+EG+KLD +F+VKR + Y EK CY+L KDC VA H+FF FDV+ ++ PHIVR+ Sbjct 4519 VDEEGNKLDKFFVVKRTNLEVYNKEKECYELTKDCGVVAEHEFFTFDVEGSRVPHIVRKD 4578 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 L+++TM+DL YALRHFD+N+C LK IL+ Y C++SYF K W+DFVENP +I VY KL Sbjct 4579 LSKFTMLDLCYALRHFDRNDCSTLKEILLTYAECDESYFQKKDWYDFVENPDIINVYKKL 4638 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+LNT D +V++GLVGVLTLDNQDL G+WYDFGDFV T P GVA+ DSYY Sbjct 4639 GPIFNRALLNTANFADTLVEAGLVGVLTLDNQDLYGQWYDFGDFVKTVPCCGVAVADSYY 4698 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L +E N E+ L++YD+TD+K+ LFNKYFK+W TYHPN Sbjct 4699 SYMMPMLTMCHALDSELF----VNGTYREFDLVQYDFTDFKLELFNKYFKHWSMTYHPNT 4754 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 C DDRCI+HCANFN+LFSMVLP T FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4755 SECEDDRCIIHCANFNILFSMVLPKTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMNMD 4814 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4815 VDTHRYRLSLKDLLLYAADPALHVASASALLDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4874 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FY+F++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV+K Sbjct 4875 FYEFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVVEVVNK 4934 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IY+GGC+ A++VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4935 YFEIYEGGCIPATQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4994 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4995 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 5054 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV+SP LMGWDYPKCDRAMPN+ RI++SL+LARKH +CC+++DRFYRLANE Sbjct 5055 DDMLRRLIKDVDSPVLMGWDYPKCDRAMPNILRIVSSLVLARKHDSCCSHTDRFYRLANE 5114 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVL E V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV +LM+ NG+ I D Sbjct 5115 CAQVLGEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCSLMACNGHKIEDL 5174 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+++Q LY NVYR DP FV +YY FLNKHFSM+ILSDDGVVCYNS++A+KGY+A+ Sbjct 5175 SIRELQKRLYSNVYRADHVDPAFVSEYYEFLNKHFSMIILSDDGVVCYNSEFASKGYIAN 5234 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRIL 840 I +F++ LYYQNNVFMSEAKCWVET++EKGPHEFCSQHT+ +K D +LPYPDPSRIL Sbjct 5235 ISDFQQVLYYQNNVFMSEAKCWVETDIEKGPHEFCSQHTMLVKMDGDEVYLPYPDPSRIL 5294 Query 841 SAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGH 900 AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQNVF VYL+YI+KLY DL Sbjct 5295 GAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENPEYQNVFRVYLEYIKKLYNDLGNQ 5354 Query 901 MLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDS SV+L D KF +E FY+++Y +Q Sbjct 5355 ILDSISVILSTCDGQKFTDETFYKNMYLRSAVMQ 5388 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus strain Quebec] Sequence ID: P0C6X0.1 Length: 7059 Range 1: 4370 to 5297 Score:1353 bits(3503), Expect:0.0, Method:Compositional matrix adjust., Identities:639/935(68%), Positives:770/935(82%), Gaps:8/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SV+ARL PC+SGL+TDV RAFDICN A VAGIG + K N CRF + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD+ G KLD +F+VKR ++ Y E CY+ +KDC VA HDFF FDV+ ++ PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTM+DL YALRHFD+N+C +L IL Y CEQSYF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+++ + D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L E + N + L++YD+TDYK+ LFNKYFK+W YHPN Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 V+C DDRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL+DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDF++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGC+ A++VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4844 YFEIYDGGCIPAAQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC+ SDRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALMS NGN I D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+ +Q LY +VYR + D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGY+A+ Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 839 I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K DGDD Y LPYP PSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPVPSRI 5202 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 L AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY +L Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGN 5262 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus OC43] Sequence ID: P0C6X6.1 Length: 7095 Range 1: 4370 to 5297 Score:1353 bits(3501), Expect:0.0, Method:Compositional matrix adjust., Identities:643/935(69%), Positives:770/935(82%), Gaps:8/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SV+ARL PC+SGL+TDV RAFDI N A VAGIG + K N CRF + Sbjct 4370 SKDTNFLNRVRGASVDARLVPCASGLSTDVQLRAFDIYN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD+ G KLD +F+VKR ++ Y E +CY+ +KDC VA HDFF FDV+ ++ PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMKCYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTM+DL YALRHFD+N+C +L IL Y CEQSYF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+++ + D +V+ GLVGVLTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGVLTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L E + N + L++YD+TDYK+ LFNKYFK+W YHPN Sbjct 4608 SYIMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 V+C DDRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL+DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDFV+S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV K Sbjct 4784 FYDFVLSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH TCC+ SDRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHETCCSQSDRFYRLANE 5023 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 CAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALMS NGN I D Sbjct 5024 CAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+ +Q LY +VYR D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGY+A+ Sbjct 5084 SIRALQKRLYSHVYRSDKVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 839 I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K DGDD Y LPYP+PSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVEHDINNGPHEFCSQHTMLVKMDGDDVY-LPYPNPSRI 5202 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 L AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL YI+KLY DL Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLAYIKKLYNDLGN 5262 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Bovine coronavirus Mebus] Sequence ID: P0C6W9.1 Length: 7094 Range 1: 4370 to 5297 Score:1350 bits(3494), Expect:0.0, Method:Compositional matrix adjust., Identities:639/935(68%), Positives:769/935(82%), Gaps:8/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKDTNFLNRVRG+SV+ARL PC+SGL+TDV RAFDICN A VAGIG + K N CRF + Sbjct 4370 SKDTNFLNRVRGTSVDARLVPCASGLSTDVQLRAFDICN--ASVAGIGLHLKVNCCRFQR 4427 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD+ G KLD +F+VKR ++ Y E CY+ +KDC VA HDFF FDV+ ++ PHIVR+ Sbjct 4428 VDENGDKLDQFFVVKRTDLTIYNREMECYERVKDCKFVAEHDFFTFDVEGSRVPHIVRKD 4487 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTM+DL YALRHFD+N+C +L IL Y CEQSYF K W+DFVENP +I VY KL Sbjct 4488 LTKYTMLDLCYALRHFDRNDCMLLCDILSIYAGCEQSYFTKKDWYDFVENPDIINVYKKL 4547 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+++ + D +V+ GLVG+LTLDNQDLNGKWYDFGD+VI PG GVAI DSYY Sbjct 4548 GPIFNRALVSATEFADKLVEVGLVGILTLDNQDLNGKWYDFGDYVIAAPGCGVAIADSYY 4607 Query 241 SYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNC 300 SY+MP+L+M + L E + N + L++YD+TDYK+ LFNKYFK+W YHPN Sbjct 4608 SYMMPMLTMCHALDCELY----VNNAYRLFDLVQYDFTDYKLELFNKYFKHWSMPYHPNT 4663 Query 301 VNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMD 360 V+C DDRCI+ CANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMNMD Sbjct 4664 VDCQDDRCIIRCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGIVMNMD 4723 Query 361 FNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKD 420 + HR+RL+LK+L++YAADPA+H+ASASAL+DLRT CFSVAA+T+G+ FQTV+PGNFN+D Sbjct 4724 VDTHRYRLSLKDLLLYAADPALHVASASALYDLRTCCFSVAAITSGVKFQTVKPGNFNQD 4783 Query 421 FYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDK 480 FYDF++S+G KEGSSV LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV K Sbjct 4784 FYDFILSKGLLKEGSSVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVVYK 4843 Query 481 YFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPT 540 YF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQDE++A TKRNVLPT Sbjct 4844 YFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQDEIYAYTKRNVLPT 4903 Query 541 ITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGW 600 +TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYGGW Sbjct 4904 LTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGW 4963 Query 601 DFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANE 660 D ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC+ SDRFYRLANE Sbjct 4964 DDMLRRLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEACCSQSDRFYRLANE 5023 Query 661 CAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDR 720 AQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA +ANV ALMS NGN I D Sbjct 5024 YAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVSANVCALMSCNGNKIEDL 5083 Query 721 EIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVAS 780 I+ +Q LY +VYR + D FV +YY FLNKHFSMMILSDDGVVCYNSDYA+KGY+A+ Sbjct 5084 SIRALQKRLYSHVYRSDMVDSTFVTEYYEFLNKHFSMMILSDDGVVCYNSDYASKGYIAN 5143 Query 781 IQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIK-DGDDGYFLPYPDPSRI 839 I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K DGDD Y LPYPDPSRI Sbjct 5144 ISAFQQVLYYQNNVFMSESKCWVENDINNGPHEFCSQHTMLVKMDGDDVY-LPYPDPSRI 5202 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 L AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY +L Sbjct 5203 LGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNELGN 5262 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5263 QILDSYSVILSTCDGQKFTDESFYKNMYLRSAVMQ 5297 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N2)] Sequence ID: P0C6X3.1 Length: 7152 Range 1: 4428 to 5355 Score:1341 bits(3471), Expect:0.0, Method:Compositional matrix adjust., Identities:635/936(68%), Positives:768/936(82%), Gaps:10/936(1%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKD NFLNRVRG+SVNARL PC+SGL+TDV RAFDICN AGIG YYK N CRF + Sbjct 4428 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 4485 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +DD+G+KLD +F+VKR + Y EK Y+L K C VA HDFF FD+D ++ PHIVR++ Sbjct 4486 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRKN 4545 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 L++YTM+DL YALRHFD N+C VL IL +Y C++SYF K W+DFVENP +I +Y KL Sbjct 4546 LSKYTMLDLCYALRHFDCNDCSVLCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 4605 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+LNTV D +VK GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4606 GPIFNRALLNTVSFADTLVKVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 4665 Query 241 SYLMPVLSMTNCLAAETHKDCDF--NKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHP 298 SY+MP+L+M + L DC+ N ++ L++YD+TDYK+ LFNKYFKYW YHP Sbjct 4666 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 4719 Query 299 NCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMN 358 N V+C +DRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMN Sbjct 4720 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 4779 Query 359 MDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFN 418 +D + HR+RL+LK+L++YAADPAMH+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4780 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 4839 Query 419 KDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVV 478 +DFY+FV S+G FKEGS+V LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV Sbjct 4840 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 4899 Query 479 DKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVL 538 KYF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNVL Sbjct 4900 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 4959 Query 539 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 598 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4960 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 5019 Query 599 GWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLA 658 GWD ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC++ DRFYRLA Sbjct 5020 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 5079 Query 659 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTII 718 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM+ NG+ I Sbjct 5080 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 5139 Query 719 DREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYV 778 D I+++Q LY NVYR D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGY+ Sbjct 5140 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 5199 Query 779 ASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 838 A+I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5200 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 5259 Query 839 ILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLT 898 IL AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5260 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 5319 Query 899 GHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF +E FY+++Y +Q Sbjct 5320 NQILDSYSVILSTCDGLKFTDESFYKNMYLKSAVMQ 5355 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N1)] Sequence ID: P0C6X2.1 Length: 7182 Range 1: 4458 to 5385 Score:1340 bits(3469), Expect:0.0, Method:Compositional matrix adjust., Identities:634/936(68%), Positives:769/936(82%), Gaps:10/936(1%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKD NFLNRVRG+SVNARL PC+SGL+TDV RAFDICN AGIG YYK N CRF + Sbjct 4458 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 4515 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +DD+G+KLD +F+VKR + Y EK Y+L K C VA HDFF FD+D ++ PHIVR++ Sbjct 4516 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRN 4575 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 L++YTM+DL YALRHFD+N+C +L IL +Y C++SYF K W+DFVENP +I +Y KL Sbjct 4576 LSKYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 4635 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+LNTV D +V+ GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4636 GPIFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 4695 Query 241 SYLMPVLSMTNCLAAETHKDCDF--NKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHP 298 SY+MP+L+M + L DC+ N ++ L++YD+TDYK+ LFNKYFKYW YHP Sbjct 4696 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 4749 Query 299 NCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMN 358 N V+C +DRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMN Sbjct 4750 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 4809 Query 359 MDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFN 418 +D + HR+RL+LK+L++YAADPAMH+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4810 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 4869 Query 419 KDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVV 478 +DFY+FV S+G FKEGS+V LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV Sbjct 4870 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 4929 Query 479 DKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVL 538 KYF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNVL Sbjct 4930 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 4989 Query 539 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 598 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4990 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 5049 Query 599 GWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLA 658 GWD ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC++ DRFYRLA Sbjct 5050 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 5109 Query 659 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTII 718 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM+ NG+ I Sbjct 5110 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 5169 Query 719 DREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYV 778 D I+++Q LY NVYR D FV++YY FL KHFSMMILSDDGVVCYNSDYA+KGY+ Sbjct 5170 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYASKGYI 5229 Query 779 ASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 838 A+I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5230 ANISVFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 5289 Query 839 ILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLT 898 IL AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5290 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVHHENEEYQKVFRVYLEYIKKLYNDLG 5349 Query 899 GHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF EE FY+++Y +Q Sbjct 5350 TQILDSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5385 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Host translation inhibitor nsp1; Short=nsp1; AltName: Full=p28; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65; Contains: RecName: Full=Papain-like proteinase; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p210; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p44; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p22; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p15; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p67; Contains: RecName: Full=Guanine-N7 methyltransferase; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p35; Contains: RecName: Full=2'-O-methyltransferase; AltName: Full=nsp16 [Human coronavirus HKU1 (isolate N5)] Sequence ID: P0C6X4.1 Length: 7132 Range 1: 4408 to 5335 Score:1340 bits(3469), Expect:0.0, Method:Compositional matrix adjust., Identities:634/936(68%), Positives:768/936(82%), Gaps:10/936(1%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 SKD NFLNRVRG+SVNARL PC+SGL+TDV RAFDICN AGIG YYK N CRF + Sbjct 4408 SKDLNFLNRVRGTSVNARLVPCASGLSTDVQLRAFDICN--TNRAGIGLYYKVNCCRFQR 4465 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +DD+G+KLD +F+VKR + Y EK Y+L K C VA HDFF FD+D ++ PHIVR++ Sbjct 4466 IDDDGNKLDKFFVVKRTNLEVYNKEKTYYELTKSCGVVAEHDFFTFDIDGSRVPHIVRRN 4525 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 L++YTM+DL YALRHFD+N+C +L IL +Y C++SYF K W+DFVENP +I +Y KL Sbjct 4526 LSKYTMLDLCYALRHFDRNDCSILCEILCEYADCKESYFSKKDWYDFVENPDIINIYKKL 4585 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G +A+LNTV D +V+ GLVGVLTLDNQDL G+WYDFGDF+ T PG GVA+ DSYY Sbjct 4586 GPIFNRALLNTVIFADTLVEVGLVGVLTLDNQDLYGQWYDFGDFIQTAPGFGVAVADSYY 4645 Query 241 SYLMPVLSMTNCLAAETHKDCDF--NKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHP 298 SY+MP+L+M + L DC+ N ++ L++YD+TDYK+ LFNKYFKYW YHP Sbjct 4646 SYMMPMLTMCHVL------DCELFVNDSYRQFDLVQYDFTDYKLELFNKYFKYWGMKYHP 4699 Query 299 NCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMN 358 N V+C +DRCI+HCANFN+LFSMVLPNT FGP+VR+IFVDGVPF+VS GYHYKELG+VMN Sbjct 4700 NTVDCDNDRCIIHCANFNILFSMVLPNTCFGPLVRQIFVDGVPFVVSIGYHYKELGVVMN 4759 Query 359 MDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFN 418 +D + HR+RL+LK+L++YAADPAMH+ASASAL DLRT CFSVAA+T+G+ FQTV+PGNFN Sbjct 4760 LDVDTHRYRLSLKDLLLYAADPAMHVASASALLDLRTCCFSVAAITSGIKFQTVKPGNFN 4819 Query 419 KDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVV 478 +DFY+FV S+G FKEGS+V LKHFFF QDG+AAITDY+YY YNLPTMVDIKQ+LF +EVV Sbjct 4820 QDFYEFVKSKGLFKEGSTVDLKHFFFTQDGNAAITDYNYYKYNLPTMVDIKQLLFVLEVV 4879 Query 479 DKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVL 538 KYF+IYDGGC+ AS+VIVNN DKSAG+PFNKFGKAR+YYE++S++EQ+E++A TKRNVL Sbjct 4880 YKYFEIYDGGCIPASQVIVNNYDKSAGYPFNKFGKARLYYEALSFEEQNEIYAYTKRNVL 4939 Query 539 PTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYG 598 PT+TQMNLKYAISAKNRARTVAGVSILSTMT R +HQK LKS+AATRG VIGTTKFYG Sbjct 4940 PTLTQMNLKYAISAKNRARTVAGVSILSTMTGRMFHQKCLKSIAATRGVPVVIGTTKFYG 4999 Query 599 GWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLA 658 GWD ML+ L KDV++P LMGWDYPKCDRAMPN+ RI++SL+LARKH CC++ DRFYRLA Sbjct 5000 GWDDMLRHLIKDVDNPVLMGWDYPKCDRAMPNILRIVSSLVLARKHEFCCSHGDRFYRLA 5059 Query 659 NECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTII 718 NECAQVLSE V+CGG YYVKPGGTSSGDATTA+ANSVFNI QA TANV +LM+ NG+ I Sbjct 5060 NECAQVLSEIVMCGGCYYVKPGGTSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIE 5119 Query 719 DREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYV 778 D I+++Q LY NVYR D FV++YY FL KHFSMMILSDDGVVCYNSDYA KGY+ Sbjct 5120 DLSIRNLQKRLYSNVYRTDYVDYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANKGYI 5179 Query 779 ASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSR 838 A+I F++ LYYQNNVFMSE+KCWVE ++ GPHEFCSQHT+ +K D +LPYPDPSR Sbjct 5180 ANISAFQQVLYYQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSR 5239 Query 839 ILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLT 898 IL AGCFVDD++KTD +++ER+VSLAIDAYPL H++ EYQ VF VYL+YI+KLY DL Sbjct 5240 ILGAGCFVDDLLKTDSVLLIERFVSLAIDAYPLVYHENEEYQKVFRVYLEYIKKLYNDLG 5299 Query 899 GHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDSYSV+L D KF EE FY+++Y +Q Sbjct 5300 TQILDSYSVILSTCDGLKFTEESFYKNMYLKSAVMQ 5335 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain M41)] Sequence ID: P0C6Y3.1 Length: 6631 Range 1: 3939 to 4870 Score:1184 bits(3062), Expect:0.0, Method:Compositional matrix adjust., Identities:576/940(61%), Positives:721/940(76%), Gaps:16/940(1%) Query 3 DTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQV- 61 D N+LNRVRGSS ARL P ++G DVV RAFD+CN ++ AG+ + K N RF +V Sbjct 3939 DKNYLNRVRGSS-EARLIPLANGCDPDVVKRAFDVCNKES--AGMFQNLKRNCARFQEVR 3995 Query 62 DDEGHKL---DSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVR 118 D E L DSYF+VK+ T SNYE EK CY+ LK + A HDFF+F+ +I R Sbjct 3996 DTEDGNLEYCDSYFVVKQTTPSNYEHEKACYEDLKS-EVTADHDFFVFN---KNIYNISR 4051 Query 119 QSLTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCE----QSYFDNKLWFDFVENPSVI 174 Q LT+YTMMD YALRHFD +CEVLK ILV YGC E + + +NK W+D +ENP Sbjct 4052 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENPKYY 4111 Query 175 GVYHKLGERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVA 234 + K+G +R+A+LN ++ + MV+ G VGV+TLDNQDLNGK+YDFGDF T PGAGV Sbjct 4112 AMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4171 Query 235 IVDSYYSYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQ 294 + D+YYSY+MP+++MT+ LA E + + D +K + LL+YDYT+ K LF KYFKYWDQ Sbjct 4172 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQDLFQKYFKYWDQ 4231 Query 295 TYHPNCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELG 354 YHPNC +CSDDRC++HCANFN+LFS ++P TSFG + RK+FVDGVPFI +CGYH KELG Sbjct 4232 EYHPNCRDCSDDRCLIHCANFNILFSTLVPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4291 Query 355 LVMNMDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRP 414 ++MN D + ++ L +LM + DPA+ + +++ L DLRT CFSV AL +G+T QTV+P Sbjct 4292 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNKLVDLRTSCFSVCALASGITHQTVKP 4351 Query 415 GNFNKDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFC 474 G+FNKDFYDF G FKEGSS+ LKHFF+ Q G+AAI DY YY YN PTM DI+Q+LFC Sbjct 4352 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDIRQLLFC 4411 Query 475 MEVVDKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTK 534 +EV KYF+ Y+GGC+ AS+V+VNNLDKSAG+PFNKFGKAR+YYE MS +EQD+LF TK Sbjct 4412 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFESTK 4470 Query 535 RNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTT 594 +NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQ+HQK+LKS+ TR A VIGTT Sbjct 4471 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNAPVVIGTT 4530 Query 595 KFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRF 654 KFYGGWD ML+ L + VE P LMGWDYPKCDRAMPN+ RI ASL+LARKH+ CCT S+R Sbjct 4531 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCTWSERV 4590 Query 655 YRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANG 714 YRL NECAQVLSE VL GG YVKPGGTSSGDATTAYANSVFNI+QAT+ANV+ L+S Sbjct 4591 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4650 Query 715 NTIIDREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAA 774 I+ +IK +Q++LY VYR+V DP FV+K+Y++L K+FS+MILSDDGVVCYN+ A Sbjct 4651 RDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4710 Query 775 KGYVASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYP 834 +G VA I F+E LYYQNNVFM+++KCWVE +LEKGPHEFCSQHT+ ++ + +LPYP Sbjct 4711 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPRYLPYP 4770 Query 835 DPSRILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLY 894 DPSRIL A FVDD+ KT+ +MERY++LAIDAYPL H++ EY+ VF+V L YI KLY Sbjct 4771 DPSRILCACVFVDDLDKTESVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLSYIRKLY 4830 Query 895 KDLTGHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 ++L+ +ML YS ++ D +KFWE+ FY ++Y +PTTLQ Sbjct 4831 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4870 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Scotophilus bat coronavirus 512] Sequence ID: P0C6W0.1 Length: 6793 Range 1: 4112 to 5038 Score:1182 bits(3059), Expect:0.0, Method:Compositional matrix adjust., Identities:571/935(61%), Positives:714/935(76%), Gaps:9/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 S D+ +LNRVRGSS ARLEP + G T V+RAFD+ + VA I K+ K N R Sbjct 4112 SVDSGYLNRVRGSSA-ARLEPLN-GSDTHHVFRAFDV--YNRDVACISKFLKVNCVRLKN 4167 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +D K D+++IVK+ T S E E+ Y+L+ DC AVA HDFF + ++ ++ RQ Sbjct 4168 LD----KHDAFWIVKKCTKSVMEHEQSIYNLISDCGAVAKHDFFTWKEGRSVYGNVCRQD 4223 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LTEYTMMDL YALR+FD+NNCE LK ILV G C++SYFDNKLWFD VEN V VY KL Sbjct 4224 LTEYTMMDLCYALRNFDENNCETLKKILVVVGACDESYFDNKLWFDPVENEDVHRVYAKL 4283 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G + +AML VK CD MV+ G+VGV+TLDNQDLNG +YDFGDFV + G GV I SYY Sbjct 4284 GTIVARAMLKCVKYCDAMVEQGIVGVITLDNQDLNGDFYDFGDFVTSVKGMGVPICTSYY 4343 Query 241 SYLMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPN 299 SY+MPV+ MTNCLA+E D F + + LL YD+T++K+ LFNKYFK+W QTYHPN Sbjct 4344 SYMMPVMGMTNCLASECFIKSDIFGEDFRTFDLLAYDFTEHKVNLFNKYFKHWGQTYHPN 4403 Query 300 CVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNM 359 C +C D+ CI+HCANFN LF+ +P T+FGP+ RK ++DGVP + + GYH+K+LG+V N Sbjct 4404 CEDCHDESCIVHCANFNTLFATTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNK 4463 Query 360 DFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 419 D N+H RL + EL+ + ADP++ IAS+ AL D RT CFSVAAL TG+T QTV+PG+FN+ Sbjct 4464 DLNLHSSRLTINELLQFCADPSLLIASSPALVDKRTVCFSVAALGTGMTNQTVKPGHFNR 4523 Query 420 DFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVD 479 +FYDF+ S+GFF+EGS +TLKHFFFAQ G AA+ D+ YY YN T++DI Q ++V Sbjct 4524 EFYDFLRSQGFFEEGSELTLKHFFFAQKGDAAVRDFDYYRYNRTTVLDICQARVVYQIVQ 4583 Query 480 KYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLP 539 YF +Y+GGC+ A EVIVNNL+KSAG+PFNKFGKA +YY+S+SY+EQD+L+A TKRN++P Sbjct 4584 CYFGMYEGGCITAKEVIVNNLNKSAGYPFNKFGKAGLYYDSLSYEEQDDLYAYTKRNIIP 4643 Query 540 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 599 T+TQ+NLKYAIS K+RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4644 TMTQLNLKYAISGKDRARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 4703 Query 600 WDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLAN 659 WD MLKTL KDVE+PHLMGWDYPKCDRA+PNM R+++++IL KH CC++SDR+YRL N Sbjct 4704 WDNMLKTLIKDVENPHLMGWDYPKCDRALPNMIRMISAMILGSKHVNCCSSSDRYYRLCN 4763 Query 660 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIID 719 E AQVL+E V GG+YVKPGGT+SGDATTAYANSVFNI QAT+ANV+ L+S + NT + Sbjct 4764 ELAQVLTEMVYSNGGFYVKPGGTTSGDATTAYANSVFNIFQATSANVNRLLSVDSNTCNN 4823 Query 720 REIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVA 779 E+K +Q LY YR D FV++Y+ +L KHFSMMILSDDGVVCYNS+YAA GYVA Sbjct 4824 IEVKQLQRKLYDCCYRSSSVDQSFVEEYFGYLRKHFSMMILSDDGVVCYNSEYAALGYVA 4883 Query 780 SIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 839 + FK LYYQNNVFMS +KCW+E ++ KGPHEFCSQHT+ I D D Y+LPYPDPSRI Sbjct 4884 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRI 4943 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 LSAG FVDDIVKTD +++ERYVSLAIDAYPL+KHD+ EY+ VF V L +++ LYK L Sbjct 4944 LSAGVFVDDIVKTDPVILLERYVSLAIDAYPLSKHDNPEYRRVFTVMLDWVKHLYKTLNQ 5003 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +LDS+SV L D +AKFW+E FY +Y + LQ Sbjct 5004 GVLDSFSVTLLEDATAKFWDESFYASMYEQSSVLQ 5038 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine epidemic diarrhea virus CV777] Sequence ID: P0C6Y4.1 Length: 6781 Range 1: 4101 to 5027 Score:1181 bits(3055), Expect:0.0, Method:Compositional matrix adjust., Identities:563/935(60%), Positives:711/935(76%), Gaps:9/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 S D +LNRVRGSS ARLEPC+ G T VYRAFDI + VA +GK+ K N R Sbjct 4101 STDMAYLNRVRGSSA-ARLEPCN-GTDTQHVYRAFDI--YNKDVACLGKFLKVNCVRLKN 4156 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 +D K D++++VKR T S E E+ Y L+ C A+A HDFF + + ++ R+ Sbjct 4157 LD----KHDAFYVVKRCTKSAMEHEQSIYSRLEKCGAIAEHDFFTWKDGRAIYGNVCRKD 4212 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LTEYTMMDL YALR+FD+NNC+VLKSIL+K G CE+SYF+NK+WFD VEN + VY L Sbjct 4213 LTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALL 4272 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G + +AML VK CD MV+ G+VGV+TLDNQDLNG +YDFGDF + G GV I SYY Sbjct 4273 GTIVARAMLKCVKFCDAMVEQGIVGVVTLDNQDLNGDFYDFGDFTCSIKGMGVPICTSYY 4332 Query 241 SYLMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPN 299 SY+MPV+ MTNCLA+E D F + + LLEYD+T++K LFNKYFKYW YHPN Sbjct 4333 SYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPN 4392 Query 300 CVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNM 359 CV+CSD++CI+HCANFN LFS +P T+FGP+ RK ++DGVP + + GYH+K+LG+V N Sbjct 4393 CVDCSDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNN 4452 Query 360 DFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 419 D N+H RL++ EL+ + +DPA+ IAS+ AL D RT CFSVAAL TG+T QTV+PG+FNK Sbjct 4453 DLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTGMTNQTVKPGHFNK 4512 Query 420 DFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVD 479 +FYDF++ +GFF EGS +TLKHFFFAQ AA+ D+ YY YN PT++DI Q ++V Sbjct 4513 EFYDFLLEQGFFSEGSELTLKHFFFAQKVDAAVKDFDYYRYNRPTVLDICQARVVYQIVQ 4572 Query 480 KYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLP 539 +YFDIY+GGC+ A EV+V NL+KSAG+P NKFGKA +YYES+SY+EQDEL+A TKRN+LP Sbjct 4573 RYFDIYEGGCITAKEVVVTNLNKSAGYPLNKFGKAGLYYESLSYEEQDELYAYTKRNILP 4632 Query 540 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 599 T+TQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TRGA+ VIGTTKFYGG Sbjct 4633 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGG 4692 Query 600 WDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLAN 659 WD MLK L VE+P LMGWDYPKCDRA+PNM R+++++IL KH+TCC+++DRF+RL N Sbjct 4693 WDNMLKNLIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCN 4752 Query 660 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIID 719 E AQVL+E V GG+Y+KPGGT+SGDATTAYANSVFNI QA +ANV+ L+S + N + Sbjct 4753 ELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANVNKLLSVDSNVCHN 4812 Query 720 REIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVA 779 E+K +Q LY YR + D +FV +YY +L KHFSMMILSDDGVVCYN+DYA+ GYVA Sbjct 4813 LEVKQLQRKLYECCYRSTIVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVA 4872 Query 780 SIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 839 + FK LYYQNNVFMS +KCW+E ++ KGPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 4873 DLNAFKAVLYYQNNVFMSASKCWIEPDINKGPHEFCSQHTMQIVDKEGTYYLPYPDPSRI 4932 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 LSAG FVDD+VKTD V++ERYVSLAIDAYPL+KH++ EY+ VF+V L +++ LYK L Sbjct 4933 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNA 4992 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +L+S+SV L D +AKFW+E FY ++Y LQ Sbjct 4993 GVLESFSVTLLEDSTAKFWDESFYANMYEKSAVLQ 5027 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette)] Sequence ID: P0C6Y1.1 Length: 6629 Range 1: 3937 to 4868 Score:1180 bits(3053), Expect:0.0, Method:Compositional matrix adjust., Identities:575/940(61%), Positives:723/940(76%), Gaps:16/940(1%) Query 3 DTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVD 62 D N+LNRVRGSS ARL P +SG DVV RAFD+CN ++ AG+ + K N RF ++ Sbjct 3937 DKNYLNRVRGSS-EARLIPLASGCDPDVVKRAFDVCNKES--AGMFQNLKRNCARFQELR 3993 Query 63 D--EGHK--LDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVR 118 D +G+ LDSYF+VK+ T SNYE EK CY+ LK + A HDFF+F+ +I R Sbjct 3994 DTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFN---KNIYNISR 4049 Query 119 QSLTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCE----QSYFDNKLWFDFVENPSVI 174 Q LT+YTMMD YALRHFD +CEVLK ILV YGC E + + +NK W+D +EN Sbjct 4050 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYY 4109 Query 175 GVYHKLGERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVA 234 + K+G +R+A+LN ++ + MV+ G VGV+TLDNQDLNGK+YDFGDF T PGAGV Sbjct 4110 VMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4169 Query 235 IVDSYYSYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQ 294 + D+YYSY+MP+++MT+ LA E + + D +K + LL+YDYT+ K LF KYFKYWDQ Sbjct 4170 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQ 4229 Query 295 TYHPNCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELG 354 YHPNC +CSDDRC++HCANFN+LFS ++P TSFG + RK+FVDGVPFI +CGYH KELG Sbjct 4230 EYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4289 Query 355 LVMNMDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRP 414 ++MN D + ++ L +LM + DPA+ + +++ L DLRT CFSV ALT+G+T QTV+P Sbjct 4290 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKP 4349 Query 415 GNFNKDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFC 474 G+FNKDFYDF G FKEGSS+ LKHFF+ Q G+AAI DY YY YN PTM DI Q+LFC Sbjct 4350 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFC 4409 Query 475 MEVVDKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTK 534 +EV KYF+ Y+GGC+ AS+V+VNNLDKSAG+PFNKFGKAR+YYE MS +EQD+LF +TK Sbjct 4410 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITK 4468 Query 535 RNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTT 594 +NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQ+HQK+LKS+ TR A+ VIGTT Sbjct 4469 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTT 4528 Query 595 KFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRF 654 KFYGGWD ML+ L + VE P LMGWDYPKCDRAMPN+ RI ASL+LARKH+ CC+ S+R Sbjct 4529 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERI 4588 Query 655 YRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANG 714 YRL NECAQVLSE VL GG YVKPGGTSSGDATTAYANSVFNI+QAT+ANV+ L+S Sbjct 4589 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4648 Query 715 NTIIDREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAA 774 I+ IK +Q++LY VYR+V DP FV+K+Y++L K+FS+MILSDDGVVCYN+ A Sbjct 4649 RDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4708 Query 775 KGYVASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYP 834 +G VA I F+E LYYQNNVFM+++KCWVE +LEKGPHEFCSQHT+ ++ + +LPYP Sbjct 4709 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYP 4768 Query 835 DPSRILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLY 894 DPSRIL A FVDD+ KT+ +MERY++LAIDAYPL H++ EY+ VF+V L YI KLY Sbjct 4769 DPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLY 4828 Query 895 KDLTGHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 ++L+ +ML YS ++ D +KFWE+ FY ++Y +PTTLQ Sbjct 4829 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Papain-like protease; Short=PL-PRO; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; AltName: Full=p41; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=p33; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p24; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p10; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p68; Contains: RecName: Full=Proofreading exoribonuclease; Short=ExoN; AltName: Full=Guanine-N7 methyltransferase; AltName: Full=Non-structural protein 14; Short=nsp14; AltName: Full=p58; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=Non-structural protein 15; Short=nsp15; AltName: Full=p39; Contains: RecName: Full=2'-O-methyl transferase; AltName: Full=Non-structural protein 16; Short=nsp16; AltName: Full=p35 [Avian infectious bronchitis virus (strain Beaudette CK)] Sequence ID: P0C6Y2.1 Length: 6629 Range 1: 3937 to 4868 Score:1180 bits(3053), Expect:0.0, Method:Compositional matrix adjust., Identities:575/940(61%), Positives:723/940(76%), Gaps:16/940(1%) Query 3 DTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVD 62 D N+LNRVRGSS ARL P +SG DVV RAFD+CN ++ AG+ + K N RF ++ Sbjct 3937 DKNYLNRVRGSS-EARLIPLASGCDPDVVKRAFDVCNKES--AGMFQNLKRNCARFQELR 3993 Query 63 D--EGHK--LDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVR 118 D +G+ LDSYF+VK+ T SNYE EK CY+ LK + A HDFF+F+ +I R Sbjct 3994 DTEDGNLEYLDSYFVVKQTTPSNYEHEKSCYEDLKS-EVTADHDFFVFN---KNIYNISR 4049 Query 119 QSLTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCE----QSYFDNKLWFDFVENPSVI 174 Q LT+YTMMD YALRHFD +CEVLK ILV YGC E + + +NK W+D +EN Sbjct 4050 QRLTKYTMMDFCYALRHFDPKDCEVLKEILVTYGCIEDYHPKWFEENKDWYDPIENSKYY 4109 Query 175 GVYHKLGERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVA 234 + K+G +R+A+LN ++ + MV+ G VGV+TLDNQDLNGK+YDFGDF T PGAGV Sbjct 4110 VMLAKMGPIVRRALLNAIEFGNLMVEKGYVGVITLDNQDLNGKFYDFGDFQKTAPGAGVP 4169 Query 235 IVDSYYSYLMPVLSMTNCLAAETHKDCDFNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQ 294 + D+YYSY+MP+++MT+ LA E + + D +K + LL+YDYT+ K LF KYFKYWDQ Sbjct 4170 VFDTYYSYMMPIIAMTDALAPERYFEYDVHKGYKSYDLLKYDYTEEKQELFQKYFKYWDQ 4229 Query 295 TYHPNCVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELG 354 YHPNC +CSDDRC++HCANFN+LFS ++P TSFG + RK+FVDGVPFI +CGYH KELG Sbjct 4230 EYHPNCRDCSDDRCLIHCANFNILFSTLIPQTSFGNLCRKVFVDGVPFIATCGYHSKELG 4289 Query 355 LVMNMDFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRP 414 ++MN D + ++ L +LM + DPA+ + +++ L DLRT CFSV ALT+G+T QTV+P Sbjct 4290 VIMNQDNTMSFSKMGLSQLMQFVGDPALLVGTSNNLVDLRTSCFSVCALTSGITHQTVKP 4349 Query 415 GNFNKDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFC 474 G+FNKDFYDF G FKEGSS+ LKHFF+ Q G+AAI DY YY YN PTM DI Q+LFC Sbjct 4350 GHFNKDFYDFAEKAGMFKEGSSIPLKHFFYPQTGNAAINDYDYYRYNRPTMFDICQLLFC 4409 Query 475 MEVVDKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTK 534 +EV KYF+ Y+GGC+ AS+V+VNNLDKSAG+PFNKFGKAR+YYE MS +EQD+LF +TK Sbjct 4410 LEVTSKYFECYEGGCIPASQVVVNNLDKSAGYPFNKFGKARLYYE-MSLEEQDQLFEITK 4468 Query 535 RNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTT 594 +NVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQ+HQK+LKS+ TR A+ VIGTT Sbjct 4469 KNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQFHQKILKSIVNTRNASVVIGTT 4528 Query 595 KFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRF 654 KFYGGWD ML+ L + VE P LMGWDYPKCDRAMPN+ RI ASL+LARKH+ CC+ S+R Sbjct 4529 KFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRAMPNLLRIAASLVLARKHTNCCSWSERI 4588 Query 655 YRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANG 714 YRL NECAQVLSE VL GG YVKPGGTSSGDATTAYANSVFNI+QAT+ANV+ L+S Sbjct 4589 YRLYNECAQVLSETVLATGGIYVKPGGTSSGDATTAYANSVFNIIQATSANVARLLSVIT 4648 Query 715 NTIIDREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAA 774 I+ IK +Q++LY VYR+V DP FV+K+Y++L K+FS+MILSDDGVVCYN+ A Sbjct 4649 RDIVYDNIKSLQYELYQQVYRRVNFDPAFVEKFYSYLCKNFSLMILSDDGVVCYNNTLAK 4708 Query 775 KGYVASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYP 834 +G VA I F+E LYYQNNVFM+++KCWVE +LEKGPHEFCSQHT+ ++ + +LPYP Sbjct 4709 QGLVADISGFREVLYYQNNVFMADSKCWVEPDLEKGPHEFCSQHTMLVEVDGEPKYLPYP 4768 Query 835 DPSRILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLY 894 DPSRIL A FVDD+ KT+ +MERY++LAIDAYPL H++ EY+ VF+V L YI KLY Sbjct 4769 DPSRILGACVFVDDVDKTEPVAVMERYIALAIDAYPLVHHENEEYKKVFFVLLAYIRKLY 4828 Query 895 KDLTGHMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 ++L+ +ML YS ++ D +KFWE+ FY ++Y +PTTLQ Sbjct 4829 QELSQNMLMDYSFVMDIDKGSKFWEQEFYENMYRAPTTLQ 4868 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Porcine transmissible gastroenteritis coronavirus strain Purdue] Sequence ID: P0C6Y5.1 Length: 6684 Range 1: 4003 to 4927 Score:1139 bits(2947), Expect:0.0, Method:Compositional matrix adjust., Identities:561/933(60%), Positives:700/933(75%), Gaps:9/933(0%) Query 3 DTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVD 62 D ++LNRVRGSS ARLEPC+ G D V RAFDI N VA IGK+ KTN RF +D Sbjct 4003 DQSYLNRVRGSSA-ARLEPCN-GTDPDHVSRAFDIYN--KDVACIGKFLKTNCSRFRNLD 4058 Query 63 DEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLT 122 K D+Y+IVKR T + + E+ CY+ LKD AVA HDFF + + + ++ R++LT Sbjct 4059 ----KHDAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLT 4114 Query 123 EYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGE 182 +YTMMDL YA+R+FD+ NCEVLK ILV G C + +F+NK WFD VEN ++ VY KLG Sbjct 4115 KYTMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGP 4174 Query 183 RIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSY 242 + AML V CD +V+ G +GV+TLDNQDLNG +YDFGDFV T PG G A V SYYSY Sbjct 4175 IVANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSY 4234 Query 243 LMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCV 301 +MP++ MT+CL +E D + ++ LL YD+T++K LF KYFKYWD+TYHPNC Sbjct 4235 MMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEYLFQKYFKYWDRTYHPNCS 4294 Query 302 NCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDF 361 +C+ D CI+HCANFN LFSM +P T+FGP+VRK+ +DGVP +V+ GYH+K+LG+V N+D Sbjct 4295 DCTSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDV 4354 Query 362 NIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDF 421 + +L++ +L+ + DP + +AS+ AL D RT CFS+AAL+TG+T+QTV+PG+FNKDF Sbjct 4355 KLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDF 4414 Query 422 YDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKY 481 YDF+ RGFF+EGS +TLKHFFFAQ G AA+TD++YY YN T++DI Q F ++V KY Sbjct 4415 YDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKY 4474 Query 482 FDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTI 541 F+ YDGGC+NA EV+V N DKSAG+P NKFGKAR+YYE++SY+EQD LFA+TKRNVLPT+ Sbjct 4475 FECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTM 4534 Query 542 TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWD 601 TQMNLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+AATR AT VIG+TKFYGGWD Sbjct 4535 TQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWD 4594 Query 602 FMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANEC 661 MLK L +DV++ LMGWDYPKCDRA+PNM R+ +++IL KH CCT++DRFYRL+NE Sbjct 4595 NMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNEL 4654 Query 662 AQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDRE 721 AQVL+E V C GG+Y KPGGT+SGD TTAYANS FNI QA +ANV+ L+ + N + Sbjct 4655 AQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVT 4714 Query 722 IKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASI 781 +K +Q +Y N YR D +FV +Y+++L KHFSMMILSDDGVVCYN DYA GYVA I Sbjct 4715 VKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADI 4774 Query 782 QNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILS 841 FK TLYYQNNVFMS +KCWVE +L GPHEFCSQHTL I D Y+LPYPDPSRILS Sbjct 4775 NAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILS 4834 Query 842 AGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHM 901 AG FVDDIVKTD +M+ERYVSLAIDAYPLTKH YQ VF+ L +++ L K+L + Sbjct 4835 AGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGV 4894 Query 902 LDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 LDS+SV + + KFW E FY LY T LQ Sbjct 4895 LDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4927 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p16; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus 229E] Sequence ID: P0C6X1.1 Length: 6758 Range 1: 4069 to 4995 Score:1139 bits(2945), Expect:0.0, Method:Compositional matrix adjust., Identities:549/935(59%), Positives:683/935(73%), Gaps:9/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 S D ++LNRVRGSS ARLEPC+ G D RAFD+ N A IGK K+N RF Sbjct 4069 SFDNSYLNRVRGSSA-ARLEPCN-GTDIDYCVRAFDVYNKDASF--IGKNLKSNCVRFKN 4124 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 VD + D+++IVKR S + E+ Y+LLK C+AVA HDFF + +T ++ RQ Sbjct 4125 VDKD----DAFYIVKRCIKSVMDHEQSMYNLLKGCNAVAKHDFFTWHEGRTIYGNVSRQD 4180 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTMMDL +ALR+FD+ +CEV K ILV GCC YF+ K WFD +EN + VY L Sbjct 4181 LTKYTMMDLCFALRNFDEKDCEVFKEILVLTGCCSTDYFEMKNWFDPIENEDIHRVYAAL 4240 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G+ + AML V CD MV G+VGVLTLDNQDLNG +YDFGDFV+ PG G+ SYY Sbjct 4241 GKVVANAMLKCVAFCDEMVLKGVVGVLTLDNQDLNGNFYDFGDFVLCPPGMGIPYCTSYY 4300 Query 241 SYLMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPN 299 SY+MPV+ MTNCLA+E D F + + LL+YD+T++K LFNKYFKYW Q YHP+ Sbjct 4301 SYMMPVMGMTNCLASECFMKSDIFGQDFKTFDLLKYDFTEHKEVLFNKYFKYWGQDYHPD 4360 Query 300 CVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNM 359 CV+C D+ CILHC+NFN LF+ +PNT+FGP+ RK+F+DGVP + + GYH+K+LGLV N Sbjct 4361 CVDCHDEMCILHCSNFNTLFATTIPNTAFGPLCRKVFIDGVPVVATAGYHFKQLGLVWNK 4420 Query 360 DFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 419 D N H RL + EL+ + DP + +AS+ AL D RT CFSVAAL+TGLT QTV+PG+FNK Sbjct 4421 DVNTHSTRLTITELLQFVTDPTLIVASSPALVDKRTVCFSVAALSTGLTSQTVKPGHFNK 4480 Query 420 DFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVD 479 +FYDF+ S+GFF EGS +TLKHFFF Q G AAI D+ YY YN PTM+DI Q +V Sbjct 4481 EFYDFLRSQGFFDEGSELTLKHFFFTQKGDAAIKDFDYYRYNRPTMLDIGQARVAYQVAA 4540 Query 480 KYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLP 539 +YFD Y+GGC+ + EV+V NL+KSAG P NKFGKA +YYES+SY+EQD +F++TKRN+LP Sbjct 4541 RYFDCYEGGCITSREVVVTNLNKSAGWPLNKFGKAGLYYESISYEEQDAIFSLTKRNILP 4600 Query 540 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 599 T+TQ+NLKYAIS K RARTV GVS+L+TMT RQ+HQK LKS+ ATR AT VIGTTKFYGG Sbjct 4601 TMTQLNLKYAISGKERARTVGGVSLLATMTTRQFHQKCLKSIVATRNATVVIGTTKFYGG 4660 Query 600 WDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLAN 659 WD MLK L DV+ P LMGWDYPKCDRAMP+M R+L+++IL KH TCCT SD+FYRL+N Sbjct 4661 WDNMLKNLMADVDDPKLMGWDYPKCDRAMPSMIRMLSAMILGSKHVTCCTASDKFYRLSN 4720 Query 660 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIID 719 E AQVL+E V GG+Y KPGGT+SGDATTAYANSVFNI QA ++N++ ++S N + + Sbjct 4721 ELAQVLTEVVYSNGGFYFKPGGTTSGDATTAYANSVFNIFQAVSSNINCVLSVNSSNCNN 4780 Query 720 REIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVA 779 +K +Q LY N YR D FVD +Y +L KHFSMMILSDD VVCYN YA GY+A Sbjct 4781 FNVKKLQRQLYDNCYRNSNVDESFVDDFYGYLQKHFSMMILSDDSVVCYNKTYAGLGYIA 4840 Query 780 SIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 839 I FK TLYYQN VFMS AKCW E +L GPHEFCSQHT+ I D + Y+LPYPDPSRI Sbjct 4841 DISAFKATLYYQNGVFMSTAKCWTEEDLSIGPHEFCSQHTMQIVDENGKYYLPYPDPSRI 4900 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 +SAG FVDDI KTD +++ERYVSLAIDAYPL+KH EY+ VF+ L +++ L K L Sbjct 4901 ISAGVFVDDITKTDAVILLERYVSLAIDAYPLSKHPKPEYRKVFYALLDWVKHLNKTLNE 4960 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +L+S+SV L + +KFW+E FY +Y T LQ Sbjct 4961 GVLESFSVTLLDEHESKFWDESFYASMYEKSTVLQ 4995 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=p9; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p87; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; AltName: Full=p34; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; AltName: Full=p5; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; AltName: Full=p23; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; AltName: Full=p12; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL; AltName: Full=p14; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; AltName: Full=p66; AltName: Full=p66-HEL; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; AltName: Full=p41; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Human coronavirus NL63] Sequence ID: P0C6X5.1 Length: 6729 Range 1: 4044 to 4970 Score:1132 bits(2927), Expect:0.0, Method:Compositional matrix adjust., Identities:545/935(58%), Positives:691/935(73%), Gaps:9/935(0%) Query 1 SKDTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQ 60 S D ++LNR RGSS ARLEPC+ G D RAFDI N V+ +GK K N RF Sbjct 4044 SVDISYLNRARGSSA-ARLEPCN-GTDIDKCVRAFDIYN--KNVSFLGKCLKMNCVRFKN 4099 Query 61 VDDEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQS 120 D + D YF++KR T S E E+ Y+LL A+A HDFF + + ++ R + Sbjct 4100 ADLK----DGYFVIKRCTKSVMEHEQSMYNLLNFSGALAEHDFFTWKDGRVIYGNVSRHN 4155 Query 121 LTEYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKL 180 LT+YTMMDLVYA+R+FD+ NC+VLK +LV GCC+ SYFD+K W+D VEN + VY L Sbjct 4156 LTKYTMMDLVYAMRNFDEQNCDVLKEVLVLTGCCDNSYFDSKGWYDPVENEDIHRVYASL 4215 Query 181 GERIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYY 240 G+ + +AML V +CD MV G+VGVLTLDNQDLNG +YDFGDFV++ P GV SYY Sbjct 4216 GKIVARAMLKCVALCDAMVAKGVVGVLTLDNQDLNGNFYDFGDFVVSLPNMGVPCCTSYY 4275 Query 241 SYLMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPN 299 SY+MP++ +TNCLA+E D F + LL+YD+T++K LFNKYFK+W YHPN Sbjct 4276 SYMMPIMGLTNCLASECFVKSDIFGSDFKTFDLLKYDFTEHKENLFNKYFKHWSFDYHPN 4335 Query 300 CVNCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNM 359 C +C DD C++HCANFN LF+ +P T+FGP+ RK+F+DGVP + + GYH+K+LGLV N Sbjct 4336 CSDCYDDMCVIHCANFNTLFATTIPGTAFGPLCRKVFIDGVPLVTTAGYHFKQLGLVWNK 4395 Query 360 DFNIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNK 419 D N H RL + EL+ + DP++ IAS+ AL D RT CFSVAAL+TGLT Q V+PG+FN+ Sbjct 4396 DVNTHSVRLTITELLQFVTDPSLIIASSPALVDQRTICFSVAALSTGLTNQVVKPGHFNE 4455 Query 420 DFYDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVD 479 +FY+F+ RGFF EGS +TLKHFFFAQ+G AA+ D+ +Y YN PT++DI Q ++V Sbjct 4456 EFYNFLRLRGFFDEGSELTLKHFFFAQNGDAAVKDFDFYRYNKPTILDICQARVTYKIVS 4515 Query 480 KYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLP 539 +YFDIY+GGC+ A EV+V NL+KSAG P NKFGKA +YYES+SY+EQD LFA+TKRNVLP Sbjct 4516 RYFDIYEGGCIKACEVVVTNLNKSAGWPLNKFGKASLYYESISYEEQDALFALTKRNVLP 4575 Query 540 TITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGG 599 T+TQ+NLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+ TR AT VIGTTKFYGG Sbjct 4576 TMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRNATVVIGTTKFYGG 4635 Query 600 WDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLAN 659 W+ ML+TL VE+P LMGWDYPKCDRA+PNM R++++++L KH CCT +DRFYRL N Sbjct 4636 WNNMLRTLIDGVENPMLMGWDYPKCDRALPNMIRMISAMVLGSKHVNCCTATDRFYRLGN 4695 Query 660 ECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIID 719 E AQVL+E V GG+Y KPGGT+SGDA+TAYANS+FNI QA ++N++ L+S ++ + Sbjct 4696 ELAQVLTEVVYSNGGFYFKPGGTTSGDASTAYANSIFNIFQAVSSNINRLLSVPSDSCNN 4755 Query 720 REIKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVA 779 ++D+Q LY N YR + F+D YY +L KHFSMMILSDDGVVCYN DYA GY+A Sbjct 4756 VNVRDLQRRLYDNCYRLTSVEESFIDDYYGYLRKHFSMMILSDDGVVCYNKDYAELGYIA 4815 Query 780 SIQNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRI 839 I FK TLYYQNNVFMS +KCWVE +L KGPHEFCSQHT+ I D D Y+LPYPDPSRI Sbjct 4816 DISAFKATLYYQNNVFMSTSKCWVEEDLTKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRI 4875 Query 840 LSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTG 899 LSAG FVDD+VKTD V++ERYVSLAIDAYPL+KH ++EY+ VF+V L +++ L K+L Sbjct 4876 LSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHPNSEYRKVFYVLLDWVKHLNKNLNE 4935 Query 900 HMLDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 +L+S+SV L + KFW E FY +Y + T LQ Sbjct 4936 GVLESFSVTLLDNQEDKFWCEDFYASMYENSTILQ 4970 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL1-PRO/PL2-PRO; AltName: Full=PLP1/PLP2; AltName: Full=Papain-like proteinases 1/2; AltName: Full=p195; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; AltName: Full=Peptide HD2; Contains: RecName: Full=3C-like proteinase; Short=3CL-PRO; Short=3CLp; AltName: Full=M-PRO; AltName: Full=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=Non-structural protein 9; Short=nsp9; Contains: RecName: Full=Non-structural protein 10; Short=nsp10; Contains: RecName: Full=Non-structural protein 11; Short=nsp11; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp13; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp14; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp15; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp16 [Feline infectious peritonitis virus (strain 79-1146)] Sequence ID: Q98VG9.2 Length: 6709 Range 1: 4028 to 4952 Score:1129 bits(2919), Expect:0.0, Method:Compositional matrix adjust., Identities:554/933(59%), Positives:696/933(74%), Gaps:9/933(0%) Query 3 DTNFLNRVRGSSVNARLEPCSSGLTTDVVYRAFDICNFKARVAGIGKYYKTNTCRFVQVD 62 D ++LN G V LEPC+ G D V RAFDI N VA IGK+ KTN RF +D Sbjct 4028 DQSYLNEC-GVLVQLDLEPCN-GTDPDHVSRAFDIYN--KDVACIGKFLKTNCSRFRNLD 4083 Query 63 DEGHKLDSYFIVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLT 122 K D+Y++VKR T S + E+ CY+ LKD VA HDFF++ + + ++ R+ LT Sbjct 4084 ----KHDAYYVVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLT 4139 Query 123 EYTMMDLVYALRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGE 182 +YTMMDL YA+R+FD+ NCEVLK ILV G C +S+F+NK WFD VEN ++ VY +LG Sbjct 4140 KYTMMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGP 4199 Query 183 RIRQAMLNTVKMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDFVITQPGAGVAIVDSYYSY 242 + AML V CD +V+ G +G++TLDNQDLNG +YDFGDFV T PG G A V SYYSY Sbjct 4200 IVANAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTTPGFGCACVTSYYSY 4259 Query 243 LMPVLSMTNCLAAETHKDCD-FNKPLIEWPLLEYDYTDYKIGLFNKYFKYWDQTYHPNCV 301 +MP++ MT+CL +E D + ++ LL YD+TD+K LF+KYFK+WD+TYHPNC Sbjct 4260 MMPLMGMTSCLESENFVKSDIYGADYKQYDLLAYDFTDHKEKLFHKYFKHWDRTYHPNCS 4319 Query 302 NCSDDRCILHCANFNVLFSMVLPNTSFGPIVRKIFVDGVPFIVSCGYHYKELGLVMNMDF 361 +C+ D CI+HCANFN LFSM +P+T+FGP+VRK+ +DGVP +V+ GYH+K+LG+V N+D Sbjct 4320 DCTSDECIIHCANFNTLFSMTIPSTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDV 4379 Query 362 NIHRHRLALKELMMYAADPAMHIASASALWDLRTPCFSVAALTTGLTFQTVRPGNFNKDF 421 + +L++ +L+ + DP + +AS+ AL D RT CFS+AAL+TG+T+QTV+PG+FNKDF Sbjct 4380 KLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGVTYQTVKPGHFNKDF 4439 Query 422 YDFVVSRGFFKEGSSVTLKHFFFAQDGHAAITDYSYYAYNLPTMVDIKQMLFCMEVVDKY 481 YDF+ RGFF+EGS +TLKHFFFAQ G AA+TD++YY YN T++DI Q F ++V KY Sbjct 4440 YDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICQAQFVYKIVGKY 4499 Query 482 FDIYDGGCLNASEVIVNNLDKSAGHPFNKFGKARVYYESMSYQEQDELFAVTKRNVLPTI 541 F+ YDGGC+NA EV+V N DKSAG+P NKFGKAR+YYE++SY+EQD LFA+TKRNVLPT+ Sbjct 4500 FECYDGGCINAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTM 4559 Query 542 TQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWD 601 TQMNLKYAIS K RARTV GVS+LSTMT RQYHQK LKS+AATR AT VIG+TKFYGGWD Sbjct 4560 TQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWD 4619 Query 602 FMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRILASLILARKHSTCCTNSDRFYRLANEC 661 MLK L +DV++ LMGWDYPKCDRA+PNM R+ +++IL KH CCT+SDRFYRL+NE Sbjct 4620 NMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHSDRFYRLSNEL 4679 Query 662 AQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTANVSALMSANGNTIIDRE 721 AQVL+E V C GG+Y KPGGT+SGD TTAYANS FNI QA +ANV+ L+ + N + Sbjct 4680 AQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVT 4739 Query 722 IKDMQFDLYINVYRKVVPDPKFVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASI 781 +K +Q +Y N YR D +FV +Y+++L KHFSMMILSDDGVVCYN DYA GYVA I Sbjct 4740 VKSIQRKIYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADI 4799 Query 782 QNFKETLYYQNNVFMSEAKCWVETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILS 841 FK TLYYQNNVFMS +KCWVE +L GPHEFCSQHTL I D Y+LPYPDPSRILS Sbjct 4800 NAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILS 4859 Query 842 AGCFVDDIVKTDGTVMMERYVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHM 901 AG FVDDIVKTD +M+ERYVSLAIDAYPLTKH YQ VF+ L +++ L K+L + Sbjct 4860 AGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGV 4919 Query 902 LDSYSVMLCGDDSAKFWEEGFYRDLYSSPTTLQ 934 LDS+SV + + KFW E FY LY T LQ Sbjct 4920 LDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQ 4952 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Rat coronavirus (strain 681)] Sequence ID: Q9WQ77.1 Length: 307 Range 1: 1 to 307 Score:498 bits(1281), Expect:2e-169, Method:Compositional matrix adjust., Identities:232/307(76%), Positives:271/307(88%), Gaps:0/307(0%) Query 508 FNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQMNLKYAISAKNRARTVAGVSILST 567 FNKFGKAR+YYE++S++EQDE++A TKRNVLPT+TQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYEALSFEEQDEIYAYTKRNVLPTLTQMNLKYAISAKNRARTVAGVSILST 60 Query 568 MTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRA 627 MT R +HQK LKS+AATRG VIGTTKFYGGWD ML+ L KDV+SP LMGWDYPKCDRA Sbjct 61 MTGRMFHQKCLKSIAATRGVPVVIGTTKFYGGWDDMLRRLIKDVDSPVLMGWDYPKCDRA 120 Query 628 MPNMCRILASLILARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDA 687 MPN+ RI++SL+LARKH +CC+++DRFYRLANECAQVLSE V+CGG YYVKPGGTSSGDA Sbjct 121 MPNILRIVSSLVLARKHDSCCSHTDRFYRLANECAQVLSEIVMCGGCYYVKPGGTSSGDA 180 Query 688 TTAYANSVFNILQATTANVSALMSANGNTIIDREIKDMQFDLYINVYRKVVPDPKFVDKY 747 TTA+ANSVFNI QA +ANV +LM+ NG+ I D I+++Q LY NVYR DP FV +Y Sbjct 181 TTAFANSVFNICQAVSANVCSLMACNGHKIEDLSIRELQKRLYSNVYRADHVDPAFVSEY 240 Query 748 YAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCWVETNL 807 Y FLNKHFSMMILSDDGVVCYNS++A+KGY+A+I F++ LYYQNNVFMSEAKCWVET++ Sbjct 241 YEFLNKHFSMMILSDDGVVCYNSEFASKGYIANISAFQQVLYYQNNVFMSEAKCWVETDI 300 Query 808 EKGPHEF 814 EKGPHEF Sbjct 301 EKGPHEF 307 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp12 [Turkey coronavirus (strain Minnesota)] Sequence ID: Q9WQ76.1 Length: 306 Range 1: 1 to 306 Score:458 bits(1179), Expect:4e-154, Method:Compositional matrix adjust., Identities:219/307(71%), Positives:257/307(83%), Gaps:1/307(0%) Query 508 FNKFGKARVYYESMSYQEQDELFAVTKRNVLPTITQMNLKYAISAKNRARTVAGVSILST 567 FNKFGKAR+YYE MS +EQD+LF TK+NVLPTITQMNLKYAISAKNRARTVAGVSILST Sbjct 1 FNKFGKARLYYE-MSLEEQDQLFESTKKNVLPTITQMNLKYAISAKNRARTVAGVSILST 59 Query 568 MTNRQYHQKMLKSMAATRGATCVIGTTKFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRA 627 MTNRQ+HQK+LKS+ TR A VIGTTKFYGGWD ML+ L + VE P LMGWDYPKCDRA Sbjct 60 MTNRQFHQKILKSIVNTRNAPVVIGTTKFYGGWDNMLRNLIQGVEDPILMGWDYPKCDRA 119 Query 628 MPNMCRILASLILARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDA 687 MPN+ RI ASL+LARKH+ CCT S+R YRL NECAQVLSE VL GG YVKPGGTSSGDA Sbjct 120 MPNLLRITASLVLARKHTNCCTWSERIYRLYNECAQVLSETVLATGGIYVKPGGTSSGDA 179 Query 688 TTAYANSVFNILQATTANVSALMSANGNTIIDREIKDMQFDLYINVYRKVVPDPKFVDKY 747 TTAYANSVFNI+QAT+ANV+ L+S I+ +IK +Q++LY VYR+V DP FV+K+ Sbjct 180 TTAYANSVFNIIQATSANVARLLSVITRDIVYDDIKSLQYELYQQVYRRVNFDPAFVEKF 239 Query 748 YAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCWVETNL 807 Y++L K+FS+MI +DDGVVCYN+ A +G VA I F+E LYYQNNV+M+++KCWVE +L Sbjct 240 YSYLCKNFSLMIFADDGVVCYNNTLAKQGLVADISGFREILYYQNNVYMADSKCWVEPDL 299 Query 808 EKGPHEF 814 EKGPHEF Sbjct 300 EKGPHEF 306 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Berne virus] Sequence ID: P0C6V7.1 Length: 6857 Range 1: 4883 to 5364 Score:123 bits(308), Expect:6e-27, Method:Compositional matrix adjust., Identities:124/510(24%), Positives:217/510(42%), Gaps:36/510(7%) Query 395 TPCFSVAALTTGLTFQTVRPGNFNKDFYDFVVSRGFFKEGSSV--TLKHFFFAQDGHAAI 452 TP SV + FYD + + G K+F++ + A+ Sbjct 4883 TPAISVGEGVYAANVPSASATKQKIPFYDVGLCQELTDAGVDCGEAFKYFYYLSNPAGAL 4942 Query 453 TDYSYYAYNLPTMVDIKQMLFCMEVVDKYFDIYDGGCLNASEVIVNNLDKSAGHPFNKFG 512 D YY Y K + + + + + Y +N + + N G Sbjct 4943 ADVCYYDYQGTGFYSPKLLAGVYDFMKRVTECYR---INERFTYEQAKPRKSSMGINITG 4999 Query 513 -KARVYYESMSYQEQDELFAVTKRNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNR 571 + Y ++ + LF ++ LP T++ K+A+SAK RARTV+ S +++ R Sbjct 5000 YQQDAVYRALGPENIARLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFR 5059 Query 572 QYHQKMLKSM---AATRGATCVIGTTKFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAM 628 H+ + M A G C+IG +K+ + LK Y +E + G DY KCDR Sbjct 5060 FAHKPVTSKMVEVAQNSGGFCLIGVSKYGLKFSKFLKDKYGAIEGFDVFGSDYTKCDRTF 5119 Query 629 PNMCRILASLILARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDAT 688 P R L + +L ++ + NE + + +LC G KPGGTSSGDAT Sbjct 5120 PLSFRALTAALLYELGEW----DEKSWLYLNEVNSYMLDTMLCDGMLLNKPGGTSSGDAT 5175 Query 689 TAYANSVFNILQATTANVSALMS--ANGNTIIDREIKDMQFDLYINVYRKVVPDPKFVDK 746 TA++N+ +N + ++S + GN ++ + V+ ++ D +F Sbjct 5176 TAHSNTFYNYMVHYVVAFKTILSDLSEGNKVMRIAAHNAYTTGDYQVFNTLLED-QFQTN 5234 Query 747 YYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCWVETN 806 Y FLN LSDD + ++ A K + + +NF L + + + K W + Sbjct 5235 Y--FLN------FLSDDSFI-FSKPEALK--IFTCENFSNKLQTILHTKVDQTKSW---S 5280 Query 807 LEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTVMMERYVSLAI 866 + EFCS H IK + +FL P R+L++ +D + D M R+V++ Sbjct 5281 TKGHIEEFCSAHI--IKTDGEYHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILC 5334 Query 867 DAYPLTKHDDTEYQNVFWVYLQYIEKLYKD 896 ++ +++ + +F V+L +++ KD Sbjct 5335 ESAVYSRYQPEFFNGLFQVFLDKVQQFRKD 5364 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; AltName: Full=Papain-like proteinase; Short=PL-PRO; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=Non-structural protein 8; Short=nsp8; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp10; AltName: Full=p100; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp11; AltName: Full=p67; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp12; Contains: RecName: Full=Non-structural protein 13; Short=nsp13; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp14; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp15 [Breda virus serotype 1] Sequence ID: P0C6V8.1 Length: 6733 Range 1: 4882 to 5240 Score:113 bits(283), Expect:5e-24, Method:Compositional matrix adjust., Identities:104/384(27%), Positives:179/384(46%), Gaps:30/384(7%) Query 518 YESMSYQEQDELFAVTKRNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKM 577 Y ++ + +LF ++ LP T++ K+A+SAK RARTV+ S +++ R H+ + Sbjct 4882 YRALGPENITKLFEYAQKAPLPFCTKIITKFALSAKARARTVSSCSFIASTIFRFAHKPV 4941 Query 578 LKSM---AATRGATCVIGTTKFYGGWDFMLKTLYKDVESPHLMGWDYPKCDRAMPNMCRI 634 M A C+IG +K+ + LK Y +E + G DY KCDR P R Sbjct 4942 TSKMVEVAQNSQGFCLIGVSKYGLKFSKFLKDKYGAIEQFDVFGSDYTKCDRTFPLSFRA 5001 Query 635 LASLILARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANS 694 L + +L + D + L NE + + +LC G KPGGTSSGDATTA++N+ Sbjct 5002 LTAALL---YELGGWEEDSWLYL-NEVNSYMLDTMLCDGMLLNKPGGTSSGDATTAHSNT 5057 Query 695 VFNILQATTANVSALMS--ANGNTIIDREIKDMQFDLYINVYRKVVPDPKFVDKYYAFLN 752 +N + ++S ++ N ++ + V+ ++ + +F Y FLN Sbjct 5058 FYNYMVHYVVAFKTILSDLSDCNKVMRIAAHNAYTTGDYGVFNTLL-EEQFQTNY--FLN 5114 Query 753 KHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCWVETNLEKGPH 812 LSDD + ++ A K + + +NF L + + K W T Sbjct 5115 ------FLSDDSFI-FSKPGALK--IFTCENFSNKLQTILHTKVDLTKSWATTG---HIE 5162 Query 813 EFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTVMMERYVSLAIDAYPLT 872 EFCS H IK + +FL P R+L++ +D + D M R+V++ ++ + Sbjct 5163 EFCSAHI--IKTDGEYHFL--PSRGRLLASLLILDKLSDVDIYYM--RFVAILCESAVYS 5216 Query 873 KHDDTEYQNVFWVYLQYIEKLYKD 896 ++ + +F V+L +++ KD Sbjct 5217 RYQPEFFNGLFQVFLDKVQQFRKD 5240 >RecName: Full=Replicase polyprotein 1ab; Short=pp1ab; AltName: Full=ORF1ab polyprotein; Contains: RecName: Full=Non-structural protein 1; Short=nsp1; Contains: RecName: Full=Non-structural protein 2; Short=nsp2; Contains: RecName: Full=3C-like serine proteinase; Short=3CLSP; AltName: Full=M-PRO; AltName: Full=nsp3; AltName: Full=p27; Contains: RecName: Full=Non-structural protein 4; Short=nsp4; Contains: RecName: Full=Non-structural protein 5; Short=nsp5; Contains: RecName: Full=Non-structural protein 6; Short=nsp6; Contains: RecName: Full=Non-structural protein 7; Short=nsp7; Contains: RecName: Full=RNA-directed RNA polymerase; Short=Pol; Short=RdRp; AltName: Full=nsp9; Contains: RecName: Full=Helicase; Short=Hel; AltName: Full=nsp10; Contains: RecName: Full=Exoribonuclease; Short=ExoN; AltName: Full=nsp11; Contains: RecName: Full=Non-structural protein 12; Short=nsp12; Contains: RecName: Full=Uridylate-specific endoribonuclease; AltName: Full=NendoU; AltName: Full=nsp13; Contains: RecName: Full=Putative 2'-O-methyl transferase; AltName: Full=nsp14 [White bream virus (strain DF24/00)] Sequence ID: Q008X6.1 Length: 6872 Range 1: 4888 to 5375 Score:89.0 bits(219), Expect:1e-16, Method:Compositional matrix adjust., Identities:128/549(23%), Positives:211/549(38%), Gaps:97/549(17%) Query 417 FNKDFYDFVVSRGFFKEGSSVTLKHFFFAQDGHA--AITDYSYYAYNLPTMVD---IKQM 471 + + FYD + + G +++ + Q G A+ D+ YY YN P D +K + Sbjct 4888 YKRPFYDLDLIQRMNSAGLNLSETTGYHYQCGTTTEAVEDFMYYNYNSPKSFDPSYLKSV 4947 Query 472 LFCMEVVDKYFDIYDGGCLNASEVIVNNLDKSAGHP-FNKFGKA------RVYYESMSYQ 524 M DK+ I L+ +G P + G + + ++ Sbjct 4948 YTYMR--DKFMKIISTD---------EKLNHQSGAPRMSSMGVGVSGFFQKTVWNALPED 4996 Query 525 EQDELFAVTKRNVLPTITQMNLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAAT 584 L + V+P T + K+ K R RT+ G S +++ R H+ + M T Sbjct 4997 FSPRLLDTASKTVMPFSTNIVKKFQRQKKTRVRTLGGSSFITSSIFRMLHKPVTNKMVQT 5056 Query 585 RGATC---VIGTTKFYGGWDFMLKTLYKD-VESPHLMGWDYPKCDRAMPNMCRILASLIL 640 A +IG +KF G+ L + + +E +MG DY KCDR+ P +CR L++ + Sbjct 5057 AQANIGPFLIGISKFNLGFHKYLSAHHPNGIEDCQVMGADYTKCDRSFPVVCRALSAALF 5116 Query 641 ARKHSTCCTNSDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFN--- 697 N + NE L + G + KPGGT+SGD+TTA++NS +N Sbjct 5117 YELGHLEPNN----HWFLNEMFAFLLDPSFISGHIFNKPGGTTSGDSTTAFSNSFYNYFV 5172 Query 698 --ILQATT-------------ANVSALMSANGNTIIDREIKDMQFDLYINVYRKVVPDPK 742 +Q T N++ + GNT +DLY ++ + Sbjct 5173 HLYIQYLTFLTTEMPPSYQPLCNLAHQAFSTGNT--------ETYDLYFSMADDLNSTEY 5224 Query 743 FVDKYYAFLNKHFSMMILSDDGVVCYNSDYAAKGYVASIQNFKETLYYQNNVFMSEAKCW 802 F+ HF LSDD + + + NF L ++ AK W Sbjct 5225 FL---------HF----LSDDSFII---SKPTAFPIFTPANFSMKLQNVLGCYVDPAKSW 5268 Query 803 VETNLEKGPHEFCSQHTLYIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTV--MMER 860 + + HEFCS H I + + PDP+ +L+ + D + ++ Sbjct 5269 ---SADGEIHEFCSSHICKINEK----YQYVPDPNNMLAGLICAPEPTPQDKLIWKLVAT 5321 Query 861 YVSLAIDAYPLTKHDDTEYQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDDSAKFWEE 920 LA+ + + T + N+F L + L + +SV L K E Sbjct 5322 CAELAVFHFV----NPTLFNNIF--------HLLQSLHAEFVSEHSVNLL---PPKLLEI 5366 Query 921 GFYRDLYSS 929 FY DL S Sbjct 5367 DFYTDLIDS 5375 Range 2: 4557 to 4739 Score:47.0 bits(110), Expect:0.001, Method:Compositional matrix adjust., Identities:52/212(25%), Positives:84/212(39%), Gaps:41/212(19%) Query 25 GLTTDVVYRAFDICNFKA------------RVAGIGKYYKTNTCRFVQVDDEGHKLDSYF 72 GLT D + F +K VA + K +K NT + Sbjct 4557 GLTLDTAFCPFQTGEYKPSSREFYINILNNNVASLRKVFKKNTASIPSENGT-------- 4608 Query 73 IVKRHTMSNYELEKRCYDLLKDCDAVAIHDFFIFDVDKTKTPHIVRQSLTEYTMMDLVYA 132 I+ + T + +E+ LL V H F D T +++R T Y++ DLVYA Sbjct 4609 IMLKDTGTAHEI-YVAKQLLAKGLPVLQHARFNHD----GTDYLIRYYTTPYSLGDLVYA 4663 Query 133 LRHFDQNNCEVLKSILVKYGCCEQSYFDNKLWFDFVENPSVIGVYHKLGERIRQAMLNTV 192 D K +L+ +++ D P Y+ E++R + + + Sbjct 4664 YMVGD------FKHMLLALDITDETCLD----------PGNYSSYYNFKEQLRNKLASVI 4707 Query 193 KMCDHMVKSGLVGVLTLDNQDLNGKWYDFGDF 224 + ++ + L +TLDN DLNG YDFGD+ Sbjct 4708 PNVNKILAAELPLAITLDNIDLNGFLYDFGDY 4739