******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.5.1 (Release date: Sun Jan 29 10:33:12 2023 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= housekeeping.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ cds-WP_067424969.1 1.0000 100 cds-WP_107406526.1 1.0000 100 cds-WP_067424987.1 1.0000 100 cds-WP_067425001.1 1.0000 100 cds-WP_067425004.1 1.0000 100 cds-WP_225988185.1 1.0000 100 cds-WP_067425052.1 1.0000 100 cds-WP_067425065.1 1.0000 100 cds-WP_067444686.1 1.0000 100 cds-WP_067425097.1 1.0000 100 cds-WP_159425310.1 1.0000 100 cds-WP_067425135.1 1.0000 100 cds-WP_225988189.1 1.0000 100 cds-WP_067425196.1 1.0000 100 cds-WP_067425225.1 1.0000 100 cds-WP_067425243.1 1.0000 100 cds-WP_225988477.1 1.0000 100 cds-WP_067425367.1 1.0000 100 cds-WP_067425381.1 1.0000 100 cds-SLCG_RS43870 1.0000 100 sigJ 1.0000 100 cds-WP_067425469.1 1.0000 100 cds-WP_067425491.1 1.0000 100 cds-WP_067425496.1 1.0000 100 cds-WP_067425512.1 1.0000 100 cds-WP_067425534.1 1.0000 100 cds-SLCG_RS43880 1.0000 100 cds-WP_079164354.1 1.0000 100 cds-WP_067425582.1 1.0000 100 cds-WP_067425585.1 1.0000 100 cds-WP_067425616.1 1.0000 100 cds-WP_067425664.1 1.0000 100 cds-WP_067425714.1 1.0000 100 cds-WP_067425724.1 1.0000 100 cds-WP_067425730.1 1.0000 100 cds-WP_067425794.1 1.0000 100 cds-WP_067425822.1 1.0000 100 cds-WP_067425829.1 1.0000 100 cds-WP_067425930.1 1.0000 100 cds-WP_067444817.1 1.0000 100 cds-WP_067425942.1 1.0000 100 cds-WP_067425945.1 1.0000 100 cds-WP_067425979.1 1.0000 100 cds-WP_067425991.1 1.0000 100 cds-WP_067426030.1 1.0000 100 cds-WP_067426040.1 1.0000 100 cds-WP_067444835.1 1.0000 100 cds-WP_067426071.1 1.0000 100 cds-WP_067426122.1 1.0000 100 cds-WP_067426136.1 1.0000 100 cds-WP_067426159.1 1.0000 100 cds-WP_067426186.1 1.0000 100 cds-WP_067426247.1 1.0000 100 cds-WP_067426250.1 1.0000 100 cds-WP_067426269.1 1.0000 100 cds-WP_067426308.1 1.0000 100 cds-WP_067426314.1 1.0000 100 cds-WP_067426323.1 1.0000 100 cds-WP_067426347.1 1.0000 100 cds-WP_114604611.1 1.0000 100 cds-SLCG_RS03305 1.0000 100 cds-WP_067426400.1 1.0000 100 cds-WP_079165068.1 1.0000 100 cds-WP_067444882.1 1.0000 100 cds-WP_067426424.1 1.0000 100 cds-WP_067444891.1 1.0000 100 cds-WP_067426454.1 1.0000 100 cds-WP_107406544.1 1.0000 100 cds-WP_067426478.1 1.0000 100 cds-WP_067426500.1 1.0000 100 cds-WP_067444913.1 1.0000 100 cds-WP_067426574.1 1.0000 100 cds-WP_067426580.1 1.0000 100 cds-WP_225988226.1 1.0000 100 cds-WP_067426596.1 1.0000 100 cds-WP_067444927.1 1.0000 100 cds-WP_067426608.1 1.0000 100 cds-WP_225988228.1 1.0000 100 cds-WP_079164389.1 1.0000 100 cds-WP_211292750.1 1.0000 100 cds-WP_159425321.1 1.0000 100 cds-WP_211292751.1 1.0000 100 cds-SLCG_RS04025 1.0000 100 cds-WP_067426694.1 1.0000 100 cds-WP_067426702.1 1.0000 100 cds-WP_067426714.1 1.0000 100 cds-WP_067426725.1 1.0000 100 cds-WP_079164394.1 1.0000 100 cds-WP_067426775.1 1.0000 100 cds-WP_067426778.1 1.0000 100 cds-WP_067426849.1 1.0000 100 cds-WP_067426859.1 1.0000 100 cds-WP_067426874.1 1.0000 100 cds-WP_067426905.1 1.0000 100 cds-WP_079164397.1 1.0000 100 cds-WP_067426921.1 1.0000 100 cds-WP_107406550.1 1.0000 100 rho 1.0000 100 cds-WP_067426973.1 1.0000 100 cds-WP_067444957.1 1.0000 100 cds-WP_067427002.1 1.0000 100 cds-WP_067427005.1 1.0000 100 cds-WP_264086306.1 1.0000 100 cds-WP_067427133.1 1.0000 100 cds-WP_067427150.1 1.0000 100 cds-WP_067427153.1 1.0000 100 cds-WP_067427178.1 1.0000 100 cds-WP_067427222.1 1.0000 100 cds-WP_067427225.1 1.0000 100 cds-WP_079164410.1 1.0000 100 cds-WP_067427251.1 1.0000 100 cds-WP_067427258.1 1.0000 100 cds-WP_067427265.1 1.0000 100 cds-WP_225988240.1 1.0000 100 cds-WP_067427286.1 1.0000 100 cds-WP_067427288.1 1.0000 100 cds-WP_067427332.1 1.0000 100 cds-WP_067427352.1 1.0000 100 cds-WP_079164416.1 1.0000 100 cds-WP_067427393.1 1.0000 100 cds-WP_067427432.1 1.0000 100 cds-WP_067427464.1 1.0000 100 cds-WP_067445030.1 1.0000 100 cds-WP_225988251.1 1.0000 100 cds-WP_067427498.1 1.0000 100 cds-WP_067427514.1 1.0000 100 cds-WP_067427533.1 1.0000 100 cds-WP_067427548.1 1.0000 100 cds-WP_067427556.1 1.0000 100 cds-WP_067427562.1 1.0000 100 cds-WP_225988256.1 1.0000 100 cds-WP_067427573.1 1.0000 100 cds-WP_067427576.1 1.0000 100 cds-WP_067427582.1 1.0000 100 cds-WP_067427609.1 1.0000 100 cds-WP_067427631.1 1.0000 100 cds-WP_237281989.1 1.0000 100 cds-WP_067427645.1 1.0000 100 cds-WP_067427657.1 1.0000 100 cds-WP_067427665.1 1.0000 100 cds-WP_067427673.1 1.0000 100 cds-WP_067427700.1 1.0000 100 cds-WP_067427702.1 1.0000 100 cds-WP_067427745.1 1.0000 100 cds-WP_067427755.1 1.0000 100 cds-WP_067427768.1 1.0000 100 cds-WP_067427770.1 1.0000 100 cds-WP_067427775.1 1.0000 100 cds-WP_067427794.1 1.0000 100 cds-WP_067445099.1 1.0000 100 cds-WP_067427864.1 1.0000 100 cds-WP_067427916.1 1.0000 100 cds-WP_067427923.1 1.0000 100 cds-WP_067427970.1 1.0000 100 cds-WP_225988271.1 1.0000 100 cds-WP_067427994.1 1.0000 100 cds-WP_067428012.1 1.0000 100 cds-WP_225988486.1 1.0000 100 cds-WP_067428041.1 1.0000 100 cds-WP_067428043.1 1.0000 100 cds-WP_067445117.1 1.0000 100 cds-WP_067428073.1 1.0000 100 cds-WP_067428097.1 1.0000 100 cds-WP_067428116.1 1.0000 100 cds-WP_067428119.1 1.0000 100 cds-WP_067428145.1 1.0000 100 cds-WP_067428173.1 1.0000 100 cds-WP_067428181.1 1.0000 100 cds-WP_225988277.1 1.0000 100 cds-WP_067428206.1 1.0000 100 cds-WP_067428227.1 1.0000 100 cds-WP_067428288.1 1.0000 100 cds-WP_067428290.1 1.0000 100 cds-WP_067428292.1 1.0000 100 cds-WP_079164449.1 1.0000 100 cds-WP_067428306.1 1.0000 100 cds-WP_067428362.1 1.0000 100 cds-WP_067428385.1 1.0000 100 cds-WP_067428396.1 1.0000 100 tuf 1.0000 100 cds-WP_067428458.1 1.0000 100 cds-WP_067428521.1 1.0000 100 cds-WP_067428527.1 1.0000 100 cds-WP_067428532.1 1.0000 100 cds-WP_079165091.1 1.0000 100 cds-WP_067428580.1 1.0000 100 cds-WP_067428608.1 1.0000 100 cds-WP_067428611.1 1.0000 100 cds-WP_067428625.1 1.0000 100 cds-WP_067445161.1 1.0000 100 cds-WP_067428707.1 1.0000 100 cds-WP_067428743.1 1.0000 100 cds-WP_067428764.1 1.0000 100 cds-WP_067428788.1 1.0000 100 cds-WP_067428824.1 1.0000 100 cds-WP_067428850.1 1.0000 100 cds-WP_067428869.1 1.0000 100 rpoZ 1.0000 100 nusB 1.0000 100 efp 1.0000 100 rpsD 1.0000 100 cds-SLCG_RS09250 1.0000 100 cds-WP_067442219.1 1.0000 100 cds-WP_067442207.1 1.0000 100 cds-WP_067442182.1 1.0000 100 cds-WP_067442150.1 1.0000 100 cds-WP_067442089.1 1.0000 100 cds-WP_067442076.1 1.0000 100 cds-WP_067442051.1 1.0000 100 cds-WP_067442031.1 1.0000 100 cds-WP_067442015.1 1.0000 100 cds-WP_067441979.1 1.0000 100 cds-WP_067446033.1 1.0000 100 cds-WP_067441925.1 1.0000 100 cds-WP_067441886.1 1.0000 100 cds-WP_067441877.1 1.0000 100 cds-WP_067441868.1 1.0000 100 cds-WP_067441827.1 1.0000 100 cds-WP_067441809.1 1.0000 100 cds-WP_067441803.1 1.0000 100 cds-WP_067441778.1 1.0000 100 cds-WP_067441775.1 1.0000 100 cds-WP_067441751.1 1.0000 100 cds-WP_067446016.1 1.0000 100 cds-WP_067441636.1 1.0000 100 cds-WP_067441604.1 1.0000 100 cds-WP_067441450.1 1.0000 100 cds-WP_067441408.1 1.0000 100 cds-WP_067441336.1 1.0000 100 cds-WP_067441322.1 1.0000 100 cds-WP_067441205.1 1.0000 100 cds-WP_067441186.1 1.0000 100 cds-WP_067441164.1 1.0000 100 cds-WP_067441037.1 1.0000 100 cds-WP_067445952.1 1.0000 100 cds-WP_079164857.1 1.0000 100 cds-WP_067440948.1 1.0000 100 nrdR 1.0000 100 lexA 1.0000 100 cds-WP_067440800.1 1.0000 100 rpsO 1.0000 100 infB 1.0000 100 cds-WP_079164846.1 1.0000 100 nusA 1.0000 100 cds-WP_067440633.1 1.0000 100 cds-WP_067440549.1 1.0000 100 cds-WP_067440537.1 1.0000 100 cds-WP_067440525.1 1.0000 100 cds-WP_067440492.1 1.0000 100 tsf 1.0000 100 rpsB 1.0000 100 cds-WP_067440471.1 1.0000 100 whiG 1.0000 100 rplS 1.0000 100 rpsP 1.0000 100 cds-WP_067440389.1 1.0000 100 rpmF 1.0000 100 rpmB 1.0000 100 ndgR 1.0000 100 cds-WP_067440215.1 1.0000 100 cds-WP_067440175.1 1.0000 100 cds-WP_067440119.1 1.0000 100 cds-WP_067440063.1 1.0000 100 cds-WP_067440060.1 1.0000 100 cds-WP_067440057.1 1.0000 100 cds-WP_067440051.1 1.0000 100 cds-WP_067440033.1 1.0000 100 cds-WP_067439946.1 1.0000 100 cds-WP_211292765.1 1.0000 100 cds-WP_067439928.1 1.0000 100 cds-WP_079164817.1 1.0000 100 cds-WP_067439819.1 1.0000 100 cds-WP_067439786.1 1.0000 100 cds-WP_067439717.1 1.0000 100 atpD 1.0000 100 cds-WP_067439711.1 1.0000 100 atpA 1.0000 100 cds-WP_067439706.1 1.0000 100 cds-WP_067439704.1 1.0000 100 atpE 1.0000 100 atpB 1.0000 100 cds-WP_067439688.1 1.0000 100 rpmE 1.0000 100 cds-WP_067439674.1 1.0000 100 rho_2 1.0000 100 cds-WP_067439591.1 1.0000 100 cds-WP_067439579.1 1.0000 100 cds-WP_067439576.1 1.0000 100 cds-WP_067439535.1 1.0000 100 cds-WP_067439502.1 1.0000 100 cds-WP_067439461.1 1.0000 100 sodX 1.0000 100 cds-WP_067439412.1 1.0000 100 cds-WP_079164800.1 1.0000 100 cds-WP_067439373.1 1.0000 100 cds-WP_067439353.1 1.0000 100 cds-WP_067439326.1 1.0000 100 sigR 1.0000 100 cds-WP_067439278.1 1.0000 100 cds-WP_067439150.1 1.0000 100 sigE 1.0000 100 cds-WP_079164636.1 1.0000 100 cds-WP_067435228.1 1.0000 100 cds-WP_067435222.1 1.0000 100 cds-WP_067435216.1 1.0000 100 cds-WP_067435181.1 1.0000 100 cds-WP_003953493.1 1.0000 100 cds-WP_067435094.1 1.0000 100 cds-WP_067435032.1 1.0000 100 cds-WP_079164621.1 1.0000 100 cds-WP_067434955.1 1.0000 100 cds-WP_182449303.1 1.0000 100 cds-WP_067434856.1 1.0000 100 cds-WP_067434743.1 1.0000 100 cds-WP_067434725.1 1.0000 100 cds-WP_067434700.1 1.0000 100 cds-WP_067434666.1 1.0000 100 cds-WP_079164613.1 1.0000 100 cds-WP_067434626.1 1.0000 100 cds-WP_067434624.1 1.0000 100 cds-WP_067434603.1 1.0000 100 cds-WP_067434560.1 1.0000 100 cds-WP_067434481.1 1.0000 100 cds-WP_067434475.1 1.0000 100 cds-WP_225988329.1 1.0000 100 cds-WP_067434460.1 1.0000 100 cds-SLCG_RS17400 1.0000 100 cds-WP_067434418.1 1.0000 100 cds-WP_067434389.1 1.0000 100 cds-WP_067434389.1-2 1.0000 100 cds-WP_067434380.1 1.0000 100 cds-WP_067434373.1 1.0000 100 cds-WP_067434350.1 1.0000 100 cds-WP_067434344.1 1.0000 100 cds-WP_067445501.1 1.0000 100 cds-WP_067434335.1 1.0000 100 cds-WP_067434332.1 1.0000 100 cds-WP_067434324.1 1.0000 100 cds-WP_079164600.1 1.0000 100 cds-WP_067434254.1 1.0000 100 cds-WP_067434238.1 1.0000 100 cds-WP_067434232.1 1.0000 100 tamR 1.0000 100 cds-WP_067434115.1 1.0000 100 cds-WP_067434097.1 1.0000 100 cds-WP_067445487.1 1.0000 100 mfd 1.0000 100 cds-WP_067433955.1 1.0000 100 cds-WP_067433921.1 1.0000 100 cds-WP_067433856.1 1.0000 100 cds-WP_079164590.1 1.0000 100 cds-WP_079164589.1 1.0000 100 cds-WP_079164588.1 1.0000 100 cds-WP_079164587.1 1.0000 100 cds-WP_225988504.1 1.0000 100 cds-WP_067433833.1 1.0000 100 mtnA 1.0000 100 cds-WP_067433741.1 1.0000 100 cds-WP_067433705.1 1.0000 100 cds-WP_182449206.1 1.0000 100 cds-WP_067433631.1 1.0000 100 cds-WP_010039908.1 1.0000 100 cds-WP_067433597.1 1.0000 100 cds-WP_067445450.1 1.0000 100 cds-WP_067433562.1 1.0000 100 cds-WP_067433544.1 1.0000 100 cds-WP_067433486.1 1.0000 100 cds-WP_225988336.1 1.0000 100 cds-WP_067438275.1 1.0000 100 cds-WP_067438331.1 1.0000 100 cds-WP_067438337.1 1.0000 100 cds-WP_067438423.1 1.0000 100 cds-WP_067438429.1 1.0000 100 cds-WP_067438441.1 1.0000 100 cds-WP_067438449.1 1.0000 100 cds-WP_225988507.1 1.0000 100 cds-WP_067438559.1 1.0000 100 cds-WP_182449310.1 1.0000 100 greA 1.0000 100 cds-WP_067438600.1 1.0000 100 cds-WP_067438638.1 1.0000 100 cds-WP_067438641.1 1.0000 100 cds-WP_067438701.1 1.0000 100 cds-WP_067438764.1 1.0000 100 cds-WP_067438829.1 1.0000 100 ychF 1.0000 100 cds-WP_067438867.1 1.0000 100 cds-WP_067438958.1 1.0000 100 cds-WP_079164640.1 1.0000 100 cds-WP_067435312.1 1.0000 100 cds-WP_067435337.1 1.0000 100 cds-WP_067435340.1 1.0000 100 cds-WP_107406845.1 1.0000 100 cds-WP_067435432.1 1.0000 100 cds-WP_067435445.1 1.0000 100 cds-WP_067435448.1 1.0000 100 cds-WP_182449198.1 1.0000 100 cds-WP_067435479.1 1.0000 100 cds-WP_067435513.1 1.0000 100 cds-WP_067435622.1 1.0000 100 cds-WP_067435658.1 1.0000 100 cds-WP_067435663.1 1.0000 100 cds-WP_067435720.1 1.0000 100 cds-WP_003999914.1 1.0000 100 cds-WP_067435793.1 1.0000 100 cds-WP_067435799.1 1.0000 100 cds-WP_067435801.1 1.0000 100 cds-WP_067435808.1 1.0000 100 cds-WP_067435846.1 1.0000 100 cds-WP_067435854.1 1.0000 100 cds-WP_067435873.1 1.0000 100 cds-WP_067435885.1 1.0000 100 cds-WP_067435927.1 1.0000 100 cds-WP_079164660.1 1.0000 100 cds-WP_079165144.1 1.0000 100 cds-WP_067436038.1 1.0000 100 cds-WP_225988513.1 1.0000 100 rplI 1.0000 100 rpsR 1.0000 100 rpsF 1.0000 100 cds-WP_067436102.1 1.0000 100 cds-WP_067436111.1 1.0000 100 sigM 1.0000 100 cds-WP_067436135.1 1.0000 100 dnaN 1.0000 100 cds-WP_067436185.1 1.0000 100 cds-WP_067445613.1 1.0000 100 cds-WP_067436255.1 1.0000 100 cds-WP_067436257.1 1.0000 100 cds-WP_067436311.1 1.0000 100 cds-WP_067436327.1 1.0000 100 cds-WP_067445622.1 1.0000 100 cds-WP_067436459.1 1.0000 100 cds-WP_067436471.1 1.0000 100 cds-WP_067436585.1 1.0000 100 cds-WP_067436600.1 1.0000 100 cds-WP_067436625.1 1.0000 100 cds-WP_067436669.1 1.0000 100 cds-WP_067436704.1 1.0000 100 cds-WP_067436714.1 1.0000 100 cds-WP_170068280.1 1.0000 100 cds-WP_079164689.1 1.0000 100 cds-WP_079165152.1 1.0000 100 cds-WP_067436843.1 1.0000 100 cds-WP_067436866.1 1.0000 100 cds-WP_067437139.1 1.0000 100 cds-WP_067437196.1 1.0000 100 cds-WP_067437214.1 1.0000 100 cds-WP_225988380.1 1.0000 100 cds-WP_067437227.1 1.0000 100 cds-WP_067437268.1 1.0000 100 cds-WP_067437350.1 1.0000 100 cds-WP_067437385.1 1.0000 100 cds-WP_067437402.1 1.0000 100 cds-WP_079165159.1 1.0000 100 rpsN 1.0000 100 rpmB_2 1.0000 100 rpmG 1.0000 100 cds-WP_067437424.1 1.0000 100 rpsR_2 1.0000 100 cds-WP_067437440.1 1.0000 100 cds-WP_067445698.1 1.0000 100 cds-WP_067437491.1 1.0000 100 cds-WP_067437503.1 1.0000 100 cds-WP_079164724.1 1.0000 100 cds-WP_067437524.1 1.0000 100 cds-WP_067437535.1 1.0000 100 cds-WP_067437553.1 1.0000 100 cds-WP_067437585.1 1.0000 100 cds-WP_067437604.1 1.0000 100 cds-WP_067437633.1 1.0000 100 cds-WP_079164734.1 1.0000 100 cds-WP_152039021.1 1.0000 100 cds-WP_067437657.1 1.0000 100 cds-WP_067445715.1 1.0000 100 cds-WP_067437700.1 1.0000 100 cds-WP_067437708.1 1.0000 100 cds-WP_067437717.1 1.0000 100 cds-WP_067437722.1 1.0000 100 cds-WP_067445717.1 1.0000 100 cds-WP_225988390.1 1.0000 100 cds-SLCG_RS26860 1.0000 100 cds-WP_067437799.1 1.0000 100 cds-WP_067437831.1 1.0000 100 rpmG_2 1.0000 100 cds-WP_182449176.1 1.0000 100 nusG 1.0000 100 rplK 1.0000 100 rplA 1.0000 100 rplJ 1.0000 100 rplL 1.0000 100 rpoB 1.0000 100 cds-WP_067437913.1 1.0000 100 rpsL 1.0000 100 rpsG 1.0000 100 fusA 1.0000 100 tuf_2 1.0000 100 rpsJ 1.0000 100 rplC 1.0000 100 rplD 1.0000 100 rplW 1.0000 100 rplB 1.0000 100 rpsS 1.0000 100 rplV 1.0000 100 rpsC 1.0000 100 rplP 1.0000 100 rpmC 1.0000 100 rpsQ 1.0000 100 rplN 1.0000 100 rplX 1.0000 100 rplE 1.0000 100 cds-WP_003956452.1 1.0000 100 rpsH 1.0000 100 rplF 1.0000 100 rplR 1.0000 100 rpsE 1.0000 100 rpmD 1.0000 100 rplO 1.0000 100 infA 1.0000 100 rpmJ 1.0000 100 rpsM 1.0000 100 rpsK 1.0000 100 cds-WP_003966937.1 1.0000 100 rplQ 1.0000 100 rplM 1.0000 100 rpsI 1.0000 100 cds-WP_067437980.1 1.0000 100 cds-WP_067437984.1 1.0000 100 cds-WP_067437987.1 1.0000 100 cds-WP_079164740.1 1.0000 100 cds-WP_067438001.1 1.0000 100 cds-WP_067438024.1 1.0000 100 cds-WP_067438029.1 1.0000 100 cds-WP_079165169.1 1.0000 100 cds-WP_067438048.1 1.0000 100 cds-WP_067438054.1 1.0000 100 cds-WP_067438104.1 1.0000 100 cds-WP_067438135.1 1.0000 100 cds-WP_067438215.1 1.0000 100 cds-WP_225988401.1 1.0000 100 cds-WP_067433314.1 1.0000 100 cds-WP_067433301.1 1.0000 100 cds-WP_067433224.1 1.0000 100 cds-WP_079164567.1 1.0000 100 cds-WP_067433216.1 1.0000 100 cds-WP_067433156.1 1.0000 100 cds-WP_067433111.1 1.0000 100 cds-WP_067433078.1 1.0000 100 cds-WP_067433044.1 1.0000 100 cds-WP_225988406.1 1.0000 100 cds-WP_067432814.1 1.0000 100 cds-WP_067432787.1 1.0000 100 cds-WP_067432775.1 1.0000 100 cds-WP_067432769.1 1.0000 100 cds-WP_067445400.1 1.0000 100 cds-WP_079165120.1 1.0000 100 rplU 1.0000 100 rpmA 1.0000 100 cds-WP_107406612.1 1.0000 100 holA 1.0000 100 rpsT 1.0000 100 hrcA 1.0000 100 cds-WP_067432459.1 1.0000 100 cds-WP_067432385.1 1.0000 100 cds-WP_067432373.1 1.0000 100 cds-WP_067432337.1 1.0000 100 cds-WP_067432312.1 1.0000 100 cds-WP_067432284.1 1.0000 100 cds-WP_107406825.1 1.0000 100 cds-WP_067432246.1 1.0000 100 cds-WP_079164540.1 1.0000 100 cds-WP_067432227.1 1.0000 100 cds-WP_067432205.1 1.0000 100 cds-WP_079164533.1 1.0000 100 cds-WP_067432099.1 1.0000 100 cds-WP_067432053.1 1.0000 100 cds-WP_067432027.1 1.0000 100 cds-WP_067431958.1 1.0000 100 cds-WP_079164531.1 1.0000 100 cds-WP_067431937.1 1.0000 100 cds-WP_067431935.1 1.0000 100 cds-WP_067431901.1 1.0000 100 cds-WP_067431889.1 1.0000 100 cds-WP_079164526.1 1.0000 100 cds-WP_067431659.1 1.0000 100 cds-WP_067431580.1 1.0000 100 cds-WP_225988417.1 1.0000 100 cds-WP_067431536.1 1.0000 100 cds-WP_067431506.1 1.0000 100 cds-WP_067431430.1 1.0000 100 cds-WP_067445298.1 1.0000 100 cds-WP_107406597.1 1.0000 100 cds-WP_067431274.1 1.0000 100 cds-WP_067431268.1 1.0000 100 cds-WP_067431097.1 1.0000 100 cds-WP_067431035.1 1.0000 100 dnaE 1.0000 100 cds-WP_182449159.1 1.0000 100 polA 1.0000 100 rpsA 1.0000 100 cds-WP_067430704.1 1.0000 100 cds-WP_067430696.1 1.0000 100 cds-WP_067430650.1 1.0000 100 cds-WP_067430562.1 1.0000 100 cds-WP_067430482.1 1.0000 100 cds-WP_067430471.1 1.0000 100 cds-WP_067430438.1 1.0000 100 cds-WP_067430382.1 1.0000 100 cds-WP_079165102.1 1.0000 100 cds-WP_067430370.1 1.0000 100 cds-WP_067430351.1 1.0000 100 cds-WP_107406587.1 1.0000 100 cds-WP_067430268.1 1.0000 100 cds-WP_067430265.1 1.0000 100 cds-WP_067430250.1 1.0000 100 cds-WP_067430247.1 1.0000 100 cds-WP_067430234.1 1.0000 100 cds-WP_067430225.1 1.0000 100 cds-WP_067430106.1 1.0000 100 cds-WP_067430062.1 1.0000 100 scpB 1.0000 100 cds-WP_067429942.1 1.0000 100 cds-SLCG_RS34915 1.0000 100 dnaE_2 1.0000 100 cds-WP_067429827.1 1.0000 100 cds-WP_067429820.1 1.0000 100 cds-WP_067429808.1 1.0000 100 cds-WP_067429775.1 1.0000 100 cds-WP_067429749.1 1.0000 100 cds-WP_067429747.1 1.0000 100 cds-WP_067445195.1 1.0000 100 cds-WP_067429700.1 1.0000 100 soxR 1.0000 100 cds-WP_067429670.1 1.0000 100 cds-WP_067429613.1 1.0000 100 cds-WP_067429601.1 1.0000 100 cds-WP_067429546.1 1.0000 100 mtnA_2 1.0000 100 cds-WP_067445191.1 1.0000 100 cds-WP_067429462.1 1.0000 100 cds-WP_067429451.1 1.0000 100 cds-WP_067429448.1 1.0000 100 cds-WP_067429415.1 1.0000 100 cds-WP_067429366.1 1.0000 100 cds-WP_067429348.1 1.0000 100 cds-WP_067429341.1 1.0000 100 cds-WP_067429337.1 1.0000 100 infC 1.0000 100 rpmI 1.0000 100 rplT 1.0000 100 cds-WP_067429264.1 1.0000 100 cds-WP_067429182.1 1.0000 100 cds-WP_067429131.1 1.0000 100 cds-WP_067429064.1 1.0000 100 cds-WP_067429041.1 1.0000 100 cds-WP_067442277.1 1.0000 100 cds-WP_067442307.1 1.0000 100 cds-WP_067442316.1 1.0000 100 cds-WP_067442336.1 1.0000 100 cds-WP_152039041.1 1.0000 100 cds-WP_067442374.1 1.0000 100 cds-WP_107406730.1 1.0000 100 cds-WP_067442398.1 1.0000 100 cds-WP_067442427.1 1.0000 100 cds-WP_067442482.1 1.0000 100 cds-WP_067442498.1 1.0000 100 cds-WP_067446085.1 1.0000 100 cds-WP_067442543.1 1.0000 100 cds-WP_067446096.1 1.0000 100 cds-WP_067442597.1 1.0000 100 cds-WP_067442660.1 1.0000 100 cds-WP_067442690.1 1.0000 100 cds-WP_067442702.1 1.0000 100 cds-WP_067442728.1 1.0000 100 cds-WP_067442739.1 1.0000 100 cds-WP_067442752.1 1.0000 100 cds-WP_067442759.1 1.0000 100 cds-WP_067442817.1 1.0000 100 fusA_2 1.0000 100 cds-WP_067442855.1 1.0000 100 cds-WP_079164929.1 1.0000 100 cds-WP_067442871.1 1.0000 100 cds-WP_067442882.1 1.0000 100 cds-WP_067442886.1 1.0000 100 cds-WP_067442898.1 1.0000 100 cds-WP_067442902.1 1.0000 100 cds-WP_182449250.1 1.0000 100 cds-WP_067442916.1 1.0000 100 cds-WP_067442925.1 1.0000 100 cds-WP_067442935.1 1.0000 100 cds-WP_067442943.1 1.0000 100 cds-WP_067442960.1 1.0000 100 cds-WP_067442970.1 1.0000 100 cds-WP_067442972.1 1.0000 100 cds-WP_067442973.1 1.0000 100 cds-WP_067442993.1 1.0000 100 cds-WP_182449329.1 1.0000 100 cds-WP_067443012.1 1.0000 100 cds-WP_067443013.1 1.0000 100 cds-WP_067443027.1 1.0000 100 cds-WP_067443030.1 1.0000 100 cds-WP_067443037.1 1.0000 100 cds-WP_067443038.1 1.0000 100 cds-WP_067443051.1 1.0000 100 cds-WP_067443052.1 1.0000 100 cds-WP_067443066.1 1.0000 100 cds-WP_067443069.1 1.0000 100 cds-WP_067443074.1 1.0000 100 cds-WP_067443077.1 1.0000 100 cds-WP_067443107.1 1.0000 100 cds-WP_067443129.1 1.0000 100 cds-WP_067443144.1 1.0000 100 cds-WP_067443159.1 1.0000 100 cds-WP_067443173.1 1.0000 100 cds-WP_079164941.1 1.0000 100 cds-WP_067443194.1 1.0000 100 cds-WP_257785205.1 1.0000 100 cds-WP_067443209.1 1.0000 100 cds-WP_067443221.1 1.0000 100 cds-WP_067443230.1 1.0000 100 cds-WP_225988447.1 1.0000 100 cds-WP_067443244.1 1.0000 100 cds-WP_067443250.1 1.0000 100 cds-WP_067443268.1 1.0000 100 cds-WP_067443271.1 1.0000 100 cds-WP_067443274.1 1.0000 100 cds-WP_067443278.1 1.0000 100 nsrR 1.0000 100 cds-WP_067443290.1 1.0000 100 cds-WP_067443296.1 1.0000 100 cds-WP_067443303.1 1.0000 100 cds-WP_107406743.1 1.0000 100 cds-WP_067443316.1 1.0000 100 cds-WP_067446253.1 1.0000 100 cds-WP_067443323.1 1.0000 100 cds-WP_079164956.1 1.0000 100 cds-WP_067443328.1 1.0000 100 cds-WP_067443340.1 1.0000 100 cds-WP_067443344.1 1.0000 100 cds-WP_067443350.1 1.0000 100 cds-WP_067443352.1 1.0000 100 cds-WP_067443368.1 1.0000 100 cds-WP_067443377.1 1.0000 100 cds-WP_067443396.1 1.0000 100 sigJ_2 1.0000 100 cds-WP_067443404.1 1.0000 100 cds-WP_067443409.1 1.0000 100 cds-WP_067443416.1 1.0000 100 otr(A) 1.0000 100 tuf_3 1.0000 100 cds-WP_067443431.1 1.0000 100 cds-WP_067443435.1 1.0000 100 cds-WP_067443437.1 1.0000 100 cds-WP_067443448.1 1.0000 100 cds-WP_079164969.1 1.0000 100 cds-WP_225988457.1 1.0000 100 cds-WP_225988458.1 1.0000 100 cds-WP_067443508.1 1.0000 100 cds-WP_079164973.1 1.0000 100 cds-WP_067443512.1 1.0000 100 cds-SLCG_RS42100 1.0000 100 cds-WP_067443533.1 1.0000 100 cds-WP_225988539.1 1.0000 100 cds-WP_107406748.1 1.0000 100 cds-WP_225988461.1 1.0000 100 cds-WP_067446336.1 1.0000 100 cds-WP_067443592.1 1.0000 100 cds-SLCG_RS42475 1.0000 100 cds-WP_067443612.1 1.0000 100 cds-WP_067443645.1 1.0000 100 cds-WP_152039053.1 1.0000 100 cds-WP_159425403.1 1.0000 100 cds-WP_067443683.1 1.0000 100 cds-WP_067443688.1 1.0000 100 cds-WP_225988466.1 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme housekeeping.fasta -dna -mod zoops -nmotifs 3 -minw 6 -maxw 50 -oc 11 model: mod= zoops nmotifs= 3 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 6 maxw= 50 nsites: minsites= 2 maxsites= 775 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 77500 N= 775 sample: seed= 0 hsfrac= 0 searchsize= 77500 norand= no csites= 1000 Letter frequencies in dataset: A 0.177 C 0.321 G 0.322 T 0.18 Background letter frequencies (from file dataset with add-one prior applied): A 0.177 C 0.321 G 0.322 T 0.18 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 width = 50 sites = 111 llr = 1097 E-value = 2.2e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4::2:23132:21:12:14:14::2:11:24:22:23:12:24:24:341 pos.-specific C 34336324643554526336333644527314524227335414345333 probability G 15433435137326323523517226212525345332624426314116 matrix T 2:32123:12::2:23112112:23:261:3:12:231:3113:12132: bits 2.5 2.2 2.0 1.7 Relative 1.5 Entropy 1.2 (14.3 bits) 1.0 0.7 * * * 0.5 * * * * * ** * ** ** * * ** * 0.2 *** * *** ** * ******** ******* * ** * ** ***** 0.0 -------------------------------------------------- Multilevel AGGCCGGGCCGCCGCTCGACGAGCCGCTCGAGCGGGACGTCCAGCCCCAG consensus CCTGGCACAGCGTCGCGCCGCCCTTC GCTCGTCTTGCCGGTCGAGACC sequence CA T G T G C CG G AT TT AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------------------------------------- cds-WP_067439711.1 21 1.05e-11 TTCGTCAAGC TCTGCAGCCTGCCGTTCGACGAGCCGCTCCTGCGGGGCCGGCAGTTGCAG AGGTTCACTG cds-WP_079164600.1 1 8.39e-10 . AGGACGGACTGGCCGTCCTGGAGCCCCTCCTGACGCACGCCGTCGACCAG ATCCGCGGCG scpB 49 3.00e-09 GTCACGGACG AGTTCGACCGGCCGCCCGAGGTGCCCAAGGACGAGGCCAAGGAGAAGAAG GC cds-WP_067435312.1 1 5.05e-09 . CGTGCCGGCGGCACCACGACGAGCGGGGCGACCAGGACGAGCGGGACAAG TGGCACCGGA cds-WP_079164533.1 35 8.39e-09 CGTCCGGAGC TGCGGCTCAGGGCGCTGGTGGACCGGCTCGTCGACTACGGGATGGACTCG CGCTGCCGCC nusA 22 1.62e-08 GCCCGTGCCC AGGTCCAGCTCAAGTTGGCGTTCCTGTTCGTCCTGTCCGTCCTGCTCTTC CTGTACTGCC cds-WP_067439706.1 4 3.04e-08 GGC CGTTCGAGCAGCCGCTCAGGGAGCTCCTGGTGCGGGCCGTCTCGGCGCAG TAGCTGGCAA cds-WP_067428611.1 12 3.04e-08 GTCCAGCGAG ACTTGTTGCCGCTGCTCCACGTCTAGCCGTTCATGGCCGACCAGAAGATG CGCTCGGTCG cds-WP_067433955.1 37 5.60e-08 CCGCTCACGC ACGACGTGACGACGGCGGCCGCACTGCTCGACCGGTTCACGGACATCTGG AGGGGGAGCG cds-WP_225988240.1 14 8.72e-08 CAGGGCGTGG AGGCCGTCCGGCCGATCCGCGACGAGATCAAGATGCTGGTCGAGGGCCTG ATCAAGGAGA cds-WP_067437268.1 46 1.16e-07 GTGCAGGTCG TGCCCGGGCCGAACAACCCCGAGCAGCTCGTCGCCTACCTCAAGCGGGAG AAGGC cds-WP_067443030.1 25 1.55e-07 GACGTCGACC GGGCGCTCCGGCTCGTCGCCGAGTCCCGTGACCGGCTCCTGGAGGCCAAG GCCGCGAAGG cds-WP_067433078.1 43 1.55e-07 CTAGACACCT ACTGCTGCATGCTGCTCCATGGCTCCATGCTGCTCTACGCGCTGGCCTCC TGCTGCTC cds-WP_067433486.1 12 1.78e-07 TTCCGCATCG TCGAGGGCGAGGTCACCGAGGAGCAGGTGGAGATCGTCGAGGCGTACTAG GCTCGTGCGC cds-WP_067429264.1 9 2.05e-07 CCCCAGGG CGGCGAGGAGGGTGCCCGTAGGGCCGGTCGTCCTGGTCGGCGAGCTGTCG ACCGCTATCG cds-WP_225988457.1 51 2.35e-07 GTCTGGCAGC GGGCAGCGATGGCGGCCGACGCGCCGCTCCGCGGGGACGCCCAGCACCCC cds-WP_067437503.1 46 3.08e-07 GCGCTCACCC ACTCCTCGCCGATCCTCGACATCGGCCTCGACCTGCGCGCCGCGGAGTAA CCGCC rpsN 31 3.53e-07 TGGTTCCCCT AGTTCTGGCAGCTGTGCTAGCCGCAGCTCCGCCGGCACCAGGCCTAGGCG CGCGCCCCCC cds-WP_067440537.1 4 3.53e-07 CAG AGTAGTGCACGCCGCCCGGGGAACGGCTCCTGCCGATGGCGCTGTTGCAC TAGCACAAGC cds-SLCG_RS26860 11 4.03e-07 GGCCCGCTGT AGGACATGACCCCGTCGCGCCCGTCGCGCATGGTGCACCGCCACATGCAG CCGCTGCCGT cds-WP_152039021.1 10 5.24e-07 TCGCCGAGC ACGGGATGACGACCGTGGTCGAGCAGCCGGAGGAGTACCGGGGGACCAGC GTGTACAACG cds-WP_067428116.1 14 5.24e-07 GACCTGCGTC TCGCCGTACCGCCGGAGCAGGTCCCCTTCAAGAAGGGCGCGCTGATCCGC GGGCCCGAGG cds-WP_225988189.1 47 5.96e-07 CAGTGGCTTG CGTCCCGGCCGCTCCTTGACGCGTAGCTCCAGCCGCGCAGGCCGCCTCTG CGGG cds-WP_067429448.1 26 7.70e-07 GTCCTGGAGC CCGCCGAACTGCGGGCCGACGTGGTGGACCGGCTGCGCGCCGTGGCCAAG GGCTGAGGGG cds-WP_067437700.1 5 9.90e-07 CTGA AGGACTTCAGGGAGTTGCTCCTGCTCTTCCTGCCCTTCTCCCTGCCGTGC TTCCTGCCGT cds-WP_067427609.1 31 9.90e-07 AAGACCACCG ACCAGGGCCTGGCCCTCACCCTGCCGCCCCACTCCTTCGTCACCGTCCAG GCCTCACTGA cds-WP_067443437.1 43 1.12e-06 TTGCAGGCGT AGGAGCGGCGCGTCCGGGACGGCCCGCGCGAGCGGGACCGGCGGCAGGAC TAGCGGGC cds-WP_182449159.1 47 1.43e-06 TCGGACTACT CCTCGTACATGACGGGCGAGGTCGTCTCCGTCAGCGACCGGCACCCCTAG GACA cds-WP_067428850.1 2 1.43e-06 C ACCAGAAGCCCCAGACCTACCGGCAGCCCGAGCACAAGATGAAGCATATG CCGGTAGCGG cds-WP_067439412.1 11 1.62e-06 CGGCTCGCGC AGCGGGCGACGGGGGTCGGGCTGCCGCGGGGGCTGATGGGCCACCACTAG GCCGGGTAGT cds-WP_067425001.1 49 1.82e-06 TACAATACAT TGGAGGAGCCGACGGAGGGCGAGCGGCCCACCCGGCACGTAGAGGAGTTG CG cds-SLCG_RS43870 31 2.05e-06 GACGGCGGCG AGGACCAGGCGCTGAAGTTCGACGGGTTCGAGGGCTTCGACCTCCCACTG CGCAGGGCGG cds-WP_067441336.1 37 2.31e-06 CAGGTTGAGC CGTAGTAGCGGTTCCTCAACATGTTCCTCAACAGGTTCCTACAGCCGTGC CTCCCCCTCC fusA 6 2.60e-06 GCGCG AGGACACCCACAAGATGGCCGAGTCCAACAAGGCCTTCGCGCACTACCGC TGGTAGTCGC cds-WP_067435793.1 16 2.91e-06 CGAGCGGTCG AACGCATGCAGAAGCAGAACGGGCTGATCGTGAACGGAGTCATCGACCCG CCCACCTGGC cds-WP_067438641.1 7 2.91e-06 CCGCCG ACGAACTCCTCACCCTGCTCCCGCTGGTCCGCCGCACCGCGGACACGATC AGCGGGGAGT cds-WP_067440060.1 25 2.91e-06 TGGTGGTCGC CGTTCTAGCTGGCGCGCGCCGACGCCCTTGAGCGGGACCTTGGCCCGAGG CTCTGTGGGT rplX 22 3.66e-06 GGCACCCGTA TCTTCGGCCCGGTGGGTCGTGAGCTGCGCGAGAAGAAGTTCATGAAGATC ATCTCGCTCG sigM 14 3.66e-06 GACTCCGCCA ACTACAGCGAGTCCGGCTACAAGCAGGCCATCACCGACGTGAAGTTCACG GGCTGAGAGC mfd 31 4.10e-06 CGTACGCTGG ACGACATGCCCCCGGCCGCCGCGCGCGTCGGGCGATTCGCGTTGCCCACC TCGACGAAAG cds-WP_067437350.1 6 5.12e-06 CGCTG AGGCCCGCCCGGCGGTCGTCGTCGACCTCGTTGTCAGTGGCAGCCCGCAC AATGGGTGCT cds-WP_225988380.1 23 5.12e-06 CGGGTCGTTC AGCCGGTACCGGCCCGCTATCAGCACCTGTTCGTCATCCTCATGCCGTAA GACGTCGCCG cds-WP_067437440.1 3 5.72e-06 CC ACGCCGACATCCTCCGGGAGTCGCTGGACGGCAGGACGGCCTTCGAGCTG GTCGCCCTCG rpsR_2 44 5.72e-06 GCGGGCCGCG ACGCCTGGAAGCAGCTGCCGCCCGCCTTCGACACCCTCCTGGAGGTCTGA CCCCGCC cds-WP_067440175.1 38 5.72e-06 GGCGGGCTCA CGGCGTGGCGGGTACTCTCCGAGTGGCTGCAGTACCCCGTCGACCTCTTC CTCGCCCTTG rpmF 49 5.72e-06 CCGCTCTTCC TGCTCTAGTCGCCGCGGCTTCGGCCGCAGCTGCTCTTCGTCCTCTTCATC GG cds-WP_067425945.1 15 5.72e-06 TCCGTCCTGC CGGCGGTCCGGGCCGCCGCCCCGGTGCCCGTGCCGGCCGCGCGGGCCCTG CGCGCCGCCG cds-SLCG_RS43880 48 6.38e-06 CCGGCGGTCC TGGCCGTGAAGCGGTACGCCCCGTTTCTCCAGATGGCGGTGCGCCACTGC GCG rpsG 39 7.11e-06 CTTGACACCC AGGGTGTGAAGAACCGCAAGCAGGCCCGCAGCCGCTACGGCGCCAAGAAG GAGAAGTAGA cds-WP_067428521.1 2 7.91e-06 C AGGACCACCGCCTCCGCCACCAGTACCTGCATTGCTACTTCGTCAGCTAG AGAATCTTGT cds-WP_067443350.1 2 8.80e-06 C CCCACGGCCGGCTCCATGACGCCCTGCTCCGCCGAAGCGTTATGCCGCAA GTGGGGGCCT cds-WP_067442898.1 1 8.80e-06 . ACCTGCTGGACCCCTCCGACCCGTTCCCGGCCGGGTTCGTGCTGTAGACG GCGAGGATAA rplC 27 9.77e-06 AAGACCGTTG ACTCTCTGATGCGACTCGACCTCCCGGCCGGTGTCGACATCGAGATCAAG CTCTGAGGGC cds-WP_067437799.1 13 9.77e-06 GCGCTCTTCC TGGTGATCCAGCGGTTCTGGTCGCTGGACCTGCTGAGCGGCTCGATCAAG TCCTGAACAC cds-WP_067436135.1 13 9.77e-06 CGTGCTCTTT AGCGCGACTTCCCGCACCCGCAGTCGATGCTGGGCTGCGTCCGCGTATAG CCGTAGGTCT cds-WP_067440057.1 43 9.77e-06 CTGGAGTGGG GGGCGCGGTACCGGCCGGACTAGCTGCTCGACCGGTGGCGCGGGGCCTTC CTCCGCGC rplE 19 1.08e-05 GACGGCAACA AGGTCGTCACGCGTGTCGGTTACCGCTTCGACGACGAGGGCAACAAGATC CGCGTTGCCA rplW 28 1.08e-05 GACGACGTGG TCTTCACCCAGGCCGCTTTCGAGTCCTTCGTGTCCGGCCCGCAGGCCACC GACACCGAAG cds-WP_067427582.1 49 1.08e-05 ACGGCCGAAC GATGCTTCCCGCACCCCGACTTGTCCAACCACCCGCCCGCCGAGGAGACC TC cds-WP_067425730.1 5 1.08e-05 GGCA TCGCCCACCCGACGTTCGGCATGCCGAAGCGCAAGCGCCGCCTGGCCACC GCACCGGACC cds-WP_067430250.1 15 1.20e-05 CACCGCGCCG ACTGCGGGCGCGTGCTCGTCTACCACTTCCTGCGCAACAAGCTGCGTGCC CTGGCCGACT rplR 3 1.20e-05 CA TCCGCAAGCTGCGCAAGCCCGACCCGTACAAGGCCAAGGGTGTCAAGTAC GAGGGCGAAG cds-WP_067428527.1 2 1.20e-05 C ACCCCTGCCACGCCAGCCAGCCCCACATCCGCCGCCTGCGGGAGCAGACG ACCCTGGGGA rplO 43 1.33e-05 CGTCCCGAGT TCCGCGGAATGGTGCACACCGTCCGCCACCTCGTGACGGTCGAGGAGGTC GACTGATC rpsS 27 1.33e-05 CGTACTCGTT CGCCGAAGAAGGCTTCGAACAAGTACATCGTCCGCCGCCGCAAGACGAAC AAGAAGCGCT rplA 32 1.33e-05 GAAGCCCACC TCGTAGAACCGCCGTGGCAGGGCCTGCTCGGCCCGTACCACGACTCCTCA AGCACACACA cds-WP_067427562.1 19 1.33e-05 GCCCCCGGGG CAGGCGGCAAGCCGATCCACGAGTGGCTCGAACTGCGCCCGTTCTACTCC GAGCAGTCCT cds-WP_079164929.1 17 1.48e-05 CTGGACGAGG ACGGGGAGCTGGGGCGGCTTGCGCTACACGAGGTGAGTGACGAGGTCTTC TAGCGGCTCT rpmA 25 1.48e-05 CGCCGTCGTC AGGGCCACCGCCAGCAGTACACGGCGATCAAGGTCACTGAGATCCCCGCG GCTGCGAAGT cds-WP_067432337.1 6 1.80e-05 CGAGG AGGCCGTGCCGGCCGGGGCGGCCGCCGGTGAGCGCTACGCGGCGGCCCAG CTGGCGCAGG cds-WP_079164394.1 8 1.80e-05 AGGGGCC TGCTTGAGAGGGGCCTGCTTGAGCTGCTTGAGCGGCGCCCGGAGCTACAG ACTGGCGCTG cds-WP_067425664.1 6 1.80e-05 GAGCG ACGGGCAGAAGGGGCGGTACCTGCTGCGGCGCCACAGGGCCCAGCACCGG CGGCAGGCGG cds-WP_067426874.1 15 1.99e-05 CTTGACCTGC GGTTCGCACGGTAGTTCGTCCCGTGGCTCCAGCGCCGGCGGGAGATCCCG GTAACCCCCG cds-WP_079164567.1 32 2.20e-05 GTCCGCCGCT CGCCAGTCCCGCCAGTCGGGGTGCCGGTCGGCGTCGTCGTCGGCATGGTC ATCACCCGCC cds-WP_067437553.1 22 2.20e-05 GCCGAACGCG AGGCCGACCTCGCCGAGGCCCTGGCCTTCACCCGCCTCCATCTGGCCTCG GCGGCGTCGA rpsI 6 2.42e-05 GCACC CGCACGCTGCCCAGCAGCCGGTGCCGTTCGAGATCACCCAGGTCGCGCAG TAAGTCCGGC cds-WP_264086306.1 27 2.42e-05 CGATGGGGGG GGGGCCCGAGGCACCACCTGGGCCAGTTCACGCTCTGCCTCAGGCCGCAG TCGTCCTGGC cds-WP_067436255.1 34 2.67e-05 CCCTCCGGGC GGTACGCTCCGTCGCTCGCGCTGTACCGCCACGCGTACGCCACCGACAAG CGGGAGGGCG cds-WP_225988251.1 48 2.67e-05 CTCAAGAGTG CGCATGAGCTGGCGCAGGAGGAGCCGCCGTGGCGCAGCGGCAGCGACGTG GGC cds-WP_067437717.1 3 2.93e-05 CG GGCGCCAGAAGGCGCTGGAGGCGCTGCGCGCGGCGGCGCCGGTGGCCGTC GAACAGGTTT nusB 46 2.93e-05 TGGCCACTCT TCTAGTTCCAGCTGTGGGCGTGCTCGCTGATGGAGCCGGCCCACTTGTCG ATTGG cds-WP_067427514.1 3 3.22e-05 CC ACTCCGACTGGCTGGGCCGCGCCCTGCTCAAGGGGTGAGGCACCGCGGCG GACCTGAGGT cds-SLCG_RS42100 42 3.54e-05 CGGCGGCTTG CGTGGCTCGAGCGGCTGGACAAGTGGCCGGACTGGGGGCTCGTCACCCTG TGTGGCTCG cds-WP_067438764.1 17 3.54e-05 GTTACCCGAG AGTGGACGCGGAGGTGTGGGAGGCGGCTCGAGACGTGTGTGCTGCATATG TACGCCCCAT cds-WP_067426775.1 9 3.89e-05 CCCGCCCG TGTGTGGCAGGCTGGACGGGGACCACCGGGACAGGGTTAGCCTCTAGCTG CTTGAGCTTC cds-WP_067443051.1 37 4.26e-05 TCCTTTTCCA CGCTCCCGCTCCTCGTCGAAGCGCTCTTCGTGCCCTTGCACGTCCCTTCA CGAGGAGTAC cds-WP_079164689.1 43 4.26e-05 CACTCACCGG ACCGCCCGCGCGCCCGTGCGCCGCCGGTCCGGATCACGGATGACGAGAAG GACACCAG cds-WP_182449206.1 19 4.26e-05 TCACTAGGCC GCCGCGGGACCCCCGACCGGCACCCGCTCGCGCTCCACGCCCGCCTCTGG CCTTGGCCCA cds-WP_067441186.1 13 4.26e-05 GCCCGCGTCT CCCACACGGCCGGCCGCGACACCGCGGTCATGCGGCCGGTGAAGCCGAAG CCCGAACAAA cds-WP_067425942.1 14 4.26e-05 CCGGGCGCGC CGGCCGTGCCCGTGGCCCCGCCGCCGGGCCTGGCGGCCGTCCTGCCTGTG AACTCAGAGG cds-WP_067439579.1 22 4.67e-05 CTGGCGATGC CCTACTGCCCCCTGTCCTAAGCGTCCTACGGCCTGTGCGGGGGCCACGCC CTGTGCGGCT cds-WP_067430650.1 8 5.11e-05 CGGAGGA GGTCCCACCCGGCCCGCGACCAGTGCAGACAGCACAAGCAGCAGTACCCG TGGTTCGATG cds-WP_170068280.1 2 5.11e-05 G ACTTCTGGACCCTCCTTACCCGGCTGCAGCGGTGGGTCCGGGTCCCGCCG CGGCGGACTA cds-WP_067435720.1 21 5.11e-05 ATGGGCGACA CCGCCCGCACCACCACCGCGGCGGTCCGCCTCCGGCTCGACCGGTTCCCC CGGAGCCACG rpsR 3 6.12e-05 GT CGTCGCCACCGCCGCCGATGAGCCTGCTCGGGGGGAAGATCCGGAAGCCC GGCTCCCACC cds-WP_067434373.1 26 6.12e-05 GGTACTCTGC GGCGGGGGAGGACGAGGCTGAAGCCGTAGCGGGGGGACCGGCTGAAGCTG GCGCTGAAGC cds-WP_067435216.1 15 6.12e-05 GCCCTGGACG AAGGAGGCCACGCGTCGGCCGCGCCACTCCTGCGGGGCGCCCGGGCCGAG CGCGGTGACC cds-WP_107406550.1 34 6.68e-05 ACTTCCGCGA ACCCCCTGTGGAGGCCCGACGCGCAGCTTGGCGCCGTGCGCTGGGCCCCG CGGGGGCCCG cds-WP_067436843.1 29 7.29e-05 GCCCGGTCCC CCTTGAGTCGGACCTCCGGCGTCCCCCTCAGGACGCTTGTCCACGCGGAC TTACTCGGTA cds-WP_067438001.1 37 7.95e-05 AAGCATGCGG TCGCGCGACCGCGGGACCCGTGGCGGCTCCTGCGCTTCCTGTGGCTGGAC GACCGGCACC rpsQ 31 7.95e-05 GCCGTCCGTA AGGACATCGCGCGGATCTACACCCTGATGCGTGAGCGCGAGCTGGGCATC GAGACGGTGG cds-WP_067438215.1 11 8.67e-05 CTGTGTTCCG CGGTGTGCTCCGCGGTCGTCGTGTCATCGGTGTACGTCGTCATGTCCTCG ACCCTAGGAG cds-WP_067428043.1 25 8.67e-05 ACCGCCCCGA CCGTGGCCGCGCTCGCCGCCGCGGCCGACGACCACACCGACCGCACCACC GATCAGAACT cds-WP_067439704.1 7 9.44e-05 AGACAC TCCGCGAGCGGGACTAGCCAGACCAGTACGGCAAGCAGATGCCGATGTTG ATTTGGCGGG cds-WP_067439461.1 41 1.03e-04 GTTTCCGGCC GGGGCGAGGGCGCCACCGATGCCCCGGCCGACGGCACGACCGACAAGAAG GTGCTCTGAC cds-WP_067425097.1 31 1.12e-04 CGCCCAGGCT GGTCTCGCACGCTCCACGACGGGCGGCTGGACGCGGCAAGGCAGGCCCGG CTCTACTTCC cds-WP_067431274.1 24 1.32e-04 ATGCCGGACA TCCCGAACTCGCAGCTTCTCCCCCACGCCGACGCCGGTGTGGGGGAGAAG CAGCCACGAC cds-WP_067440389.1 5 1.68e-04 CCCA CCCGGCCCACCCGGCCCGCCCAGCTCGCCCACCACGCCGCTAACCACTGG TTAGCGCCCC cds-WP_067442051.1 49 1.68e-04 AGGCCGGCCC CGCTCCCCCGGTCCTGGGGCGAGTCGGTCGCGAGGGTGAAGGAGCCGCAA CG cds-WP_067429415.1 31 1.82e-04 TGCGTTGCCG TGGCGTTGCCGACCGGTTACCGGGCCCTCACGAAGATCGCGGAGAGCGCC GGTGTGCGAG rpmC 10 1.82e-04 CCTACCCCA ACGAGAAGATCGCCCGTGAGGCGCTGACTCGTGCGGCCCACAAGCTGCCG ATGAAGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_067439711.1 1e-11 20_[+1]_30 cds-WP_079164600.1 8.4e-10 [+1]_50 scpB 3e-09 48_[+1]_2 cds-WP_067435312.1 5.1e-09 [+1]_50 cds-WP_079164533.1 8.4e-09 34_[+1]_16 nusA 1.6e-08 21_[+1]_29 cds-WP_067439706.1 3e-08 3_[+1]_47 cds-WP_067428611.1 3e-08 11_[+1]_39 cds-WP_067433955.1 5.6e-08 36_[+1]_14 cds-WP_225988240.1 8.7e-08 13_[+1]_37 cds-WP_067437268.1 1.2e-07 45_[+1]_5 cds-WP_067443030.1 1.5e-07 24_[+1]_26 cds-WP_067433078.1 1.5e-07 42_[+1]_8 cds-WP_067433486.1 1.8e-07 11_[+1]_39 cds-WP_067429264.1 2e-07 8_[+1]_42 cds-WP_225988457.1 2.3e-07 50_[+1] cds-WP_067437503.1 3.1e-07 45_[+1]_5 rpsN 3.5e-07 30_[+1]_20 cds-WP_067440537.1 3.5e-07 3_[+1]_47 cds-SLCG_RS26860 4e-07 10_[+1]_40 cds-WP_152039021.1 5.2e-07 9_[+1]_41 cds-WP_067428116.1 5.2e-07 13_[+1]_37 cds-WP_225988189.1 6e-07 46_[+1]_4 cds-WP_067429448.1 7.7e-07 25_[+1]_25 cds-WP_067437700.1 9.9e-07 4_[+1]_46 cds-WP_067427609.1 9.9e-07 30_[+1]_20 cds-WP_067443437.1 1.1e-06 42_[+1]_8 cds-WP_182449159.1 1.4e-06 46_[+1]_4 cds-WP_067428850.1 1.4e-06 1_[+1]_49 cds-WP_067439412.1 1.6e-06 10_[+1]_40 cds-WP_067425001.1 1.8e-06 48_[+1]_2 cds-SLCG_RS43870 2.1e-06 30_[+1]_20 cds-WP_067441336.1 2.3e-06 36_[+1]_14 fusA 2.6e-06 5_[+1]_45 cds-WP_067435793.1 2.9e-06 15_[+1]_35 cds-WP_067438641.1 2.9e-06 6_[+1]_44 cds-WP_067440060.1 2.9e-06 24_[+1]_26 rplX 3.7e-06 21_[+1]_29 sigM 3.7e-06 13_[+1]_37 mfd 4.1e-06 30_[+1]_20 cds-WP_067437350.1 5.1e-06 5_[+1]_45 cds-WP_225988380.1 5.1e-06 22_[+1]_28 cds-WP_067437440.1 5.7e-06 2_[+1]_48 rpsR_2 5.7e-06 43_[+1]_7 cds-WP_067440175.1 5.7e-06 37_[+1]_13 rpmF 5.7e-06 48_[+1]_2 cds-WP_067425945.1 5.7e-06 14_[+1]_36 cds-SLCG_RS43880 6.4e-06 47_[+1]_3 rpsG 7.1e-06 38_[+1]_12 cds-WP_067428521.1 7.9e-06 1_[+1]_49 cds-WP_067443350.1 8.8e-06 1_[+1]_49 cds-WP_067442898.1 8.8e-06 [+1]_50 rplC 9.8e-06 26_[+1]_24 cds-WP_067437799.1 9.8e-06 12_[+1]_38 cds-WP_067436135.1 9.8e-06 12_[+1]_38 cds-WP_067440057.1 9.8e-06 42_[+1]_8 rplE 1.1e-05 18_[+1]_32 rplW 1.1e-05 27_[+1]_23 cds-WP_067427582.1 1.1e-05 48_[+1]_2 cds-WP_067425730.1 1.1e-05 4_[+1]_46 cds-WP_067430250.1 1.2e-05 14_[+1]_36 rplR 1.2e-05 2_[+1]_48 cds-WP_067428527.1 1.2e-05 1_[+1]_49 rplO 1.3e-05 42_[+1]_8 rpsS 1.3e-05 26_[+1]_24 rplA 1.3e-05 31_[+1]_19 cds-WP_067427562.1 1.3e-05 18_[+1]_32 cds-WP_079164929.1 1.5e-05 16_[+1]_34 rpmA 1.5e-05 24_[+1]_26 cds-WP_067432337.1 1.8e-05 5_[+1]_45 cds-WP_079164394.1 1.8e-05 7_[+1]_43 cds-WP_067425664.1 1.8e-05 5_[+1]_45 cds-WP_067426874.1 2e-05 14_[+1]_36 cds-WP_079164567.1 2.2e-05 31_[+1]_19 cds-WP_067437553.1 2.2e-05 21_[+1]_29 rpsI 2.4e-05 5_[+1]_45 cds-WP_264086306.1 2.4e-05 26_[+1]_24 cds-WP_067436255.1 2.7e-05 33_[+1]_17 cds-WP_225988251.1 2.7e-05 47_[+1]_3 cds-WP_067437717.1 2.9e-05 2_[+1]_48 nusB 2.9e-05 45_[+1]_5 cds-WP_067427514.1 3.2e-05 2_[+1]_48 cds-SLCG_RS42100 3.5e-05 41_[+1]_9 cds-WP_067438764.1 3.5e-05 16_[+1]_34 cds-WP_067426775.1 3.9e-05 8_[+1]_42 cds-WP_067443051.1 4.3e-05 36_[+1]_14 cds-WP_079164689.1 4.3e-05 42_[+1]_8 cds-WP_182449206.1 4.3e-05 18_[+1]_32 cds-WP_067441186.1 4.3e-05 12_[+1]_38 cds-WP_067425942.1 4.3e-05 13_[+1]_37 cds-WP_067439579.1 4.7e-05 21_[+1]_29 cds-WP_067430650.1 5.1e-05 7_[+1]_43 cds-WP_170068280.1 5.1e-05 1_[+1]_49 cds-WP_067435720.1 5.1e-05 20_[+1]_30 rpsR 6.1e-05 2_[+1]_48 cds-WP_067434373.1 6.1e-05 25_[+1]_25 cds-WP_067435216.1 6.1e-05 14_[+1]_36 cds-WP_107406550.1 6.7e-05 33_[+1]_17 cds-WP_067436843.1 7.3e-05 28_[+1]_22 cds-WP_067438001.1 8e-05 36_[+1]_14 rpsQ 8e-05 30_[+1]_20 cds-WP_067438215.1 8.7e-05 10_[+1]_40 cds-WP_067428043.1 8.7e-05 24_[+1]_26 cds-WP_067439704.1 9.4e-05 6_[+1]_44 cds-WP_067439461.1 0.0001 40_[+1]_10 cds-WP_067425097.1 0.00011 30_[+1]_20 cds-WP_067431274.1 0.00013 23_[+1]_27 cds-WP_067440389.1 0.00017 4_[+1]_46 cds-WP_067442051.1 0.00017 48_[+1]_2 cds-WP_067429415.1 0.00018 30_[+1]_20 rpmC 0.00018 9_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS width=50 seqs=111 cds-WP_067439711.1 ( 21) TCTGCAGCCTGCCGTTCGACGAGCCGCTCCTGCGGGGCCGGCAGTTGCAG 1 cds-WP_079164600.1 ( 1) AGGACGGACTGGCCGTCCTGGAGCCCCTCCTGACGCACGCCGTCGACCAG 1 scpB ( 49) AGTTCGACCGGCCGCCCGAGGTGCCCAAGGACGAGGCCAAGGAGAAGAAG 1 cds-WP_067435312.1 ( 1) CGTGCCGGCGGCACCACGACGAGCGGGGCGACCAGGACGAGCGGGACAAG 1 cds-WP_079164533.1 ( 35) TGCGGCTCAGGGCGCTGGTGGACCGGCTCGTCGACTACGGGATGGACTCG 1 nusA ( 22) AGGTCCAGCTCAAGTTGGCGTTCCTGTTCGTCCTGTCCGTCCTGCTCTTC 1 cds-WP_067439706.1 ( 4) CGTTCGAGCAGCCGCTCAGGGAGCTCCTGGTGCGGGCCGTCTCGGCGCAG 1 cds-WP_067428611.1 ( 12) ACTTGTTGCCGCTGCTCCACGTCTAGCCGTTCATGGCCGACCAGAAGATG 1 cds-WP_067433955.1 ( 37) ACGACGTGACGACGGCGGCCGCACTGCTCGACCGGTTCACGGACATCTGG 1 cds-WP_225988240.1 ( 14) AGGCCGTCCGGCCGATCCGCGACGAGATCAAGATGCTGGTCGAGGGCCTG 1 cds-WP_067437268.1 ( 46) TGCCCGGGCCGAACAACCCCGAGCAGCTCGTCGCCTACCTCAAGCGGGAG 1 cds-WP_067443030.1 ( 25) GGGCGCTCCGGCTCGTCGCCGAGTCCCGTGACCGGCTCCTGGAGGCCAAG 1 cds-WP_067433078.1 ( 43) ACTGCTGCATGCTGCTCCATGGCTCCATGCTGCTCTACGCGCTGGCCTCC 1 cds-WP_067433486.1 ( 12) TCGAGGGCGAGGTCACCGAGGAGCAGGTGGAGATCGTCGAGGCGTACTAG 1 cds-WP_067429264.1 ( 9) CGGCGAGGAGGGTGCCCGTAGGGCCGGTCGTCCTGGTCGGCGAGCTGTCG 1 cds-WP_225988457.1 ( 51) GGGCAGCGATGGCGGCCGACGCGCCGCTCCGCGGGGACGCCCAGCACCCC 1 cds-WP_067437503.1 ( 46) ACTCCTCGCCGATCCTCGACATCGGCCTCGACCTGCGCGCCGCGGAGTAA 1 rpsN ( 31) AGTTCTGGCAGCTGTGCTAGCCGCAGCTCCGCCGGCACCAGGCCTAGGCG 1 cds-WP_067440537.1 ( 4) AGTAGTGCACGCCGCCCGGGGAACGGCTCCTGCCGATGGCGCTGTTGCAC 1 cds-SLCG_RS26860 ( 11) AGGACATGACCCCGTCGCGCCCGTCGCGCATGGTGCACCGCCACATGCAG 1 cds-WP_152039021.1 ( 10) ACGGGATGACGACCGTGGTCGAGCAGCCGGAGGAGTACCGGGGGACCAGC 1 cds-WP_067428116.1 ( 14) TCGCCGTACCGCCGGAGCAGGTCCCCTTCAAGAAGGGCGCGCTGATCCGC 1 cds-WP_225988189.1 ( 47) CGTCCCGGCCGCTCCTTGACGCGTAGCTCCAGCCGCGCAGGCCGCCTCTG 1 cds-WP_067429448.1 ( 26) CCGCCGAACTGCGGGCCGACGTGGTGGACCGGCTGCGCGCCGTGGCCAAG 1 cds-WP_067437700.1 ( 5) AGGACTTCAGGGAGTTGCTCCTGCTCTTCCTGCCCTTCTCCCTGCCGTGC 1 cds-WP_067427609.1 ( 31) ACCAGGGCCTGGCCCTCACCCTGCCGCCCCACTCCTTCGTCACCGTCCAG 1 cds-WP_067443437.1 ( 43) AGGAGCGGCGCGTCCGGGACGGCCCGCGCGAGCGGGACCGGCGGCAGGAC 1 cds-WP_182449159.1 ( 47) CCTCGTACATGACGGGCGAGGTCGTCTCCGTCAGCGACCGGCACCCCTAG 1 cds-WP_067428850.1 ( 2) ACCAGAAGCCCCAGACCTACCGGCAGCCCGAGCACAAGATGAAGCATATG 1 cds-WP_067439412.1 ( 11) AGCGGGCGACGGGGGTCGGGCTGCCGCGGGGGCTGATGGGCCACCACTAG 1 cds-WP_067425001.1 ( 49) TGGAGGAGCCGACGGAGGGCGAGCGGCCCACCCGGCACGTAGAGGAGTTG 1 cds-SLCG_RS43870 ( 31) AGGACCAGGCGCTGAAGTTCGACGGGTTCGAGGGCTTCGACCTCCCACTG 1 cds-WP_067441336.1 ( 37) CGTAGTAGCGGTTCCTCAACATGTTCCTCAACAGGTTCCTACAGCCGTGC 1 fusA ( 6) AGGACACCCACAAGATGGCCGAGTCCAACAAGGCCTTCGCGCACTACCGC 1 cds-WP_067435793.1 ( 16) AACGCATGCAGAAGCAGAACGGGCTGATCGTGAACGGAGTCATCGACCCG 1 cds-WP_067438641.1 ( 7) ACGAACTCCTCACCCTGCTCCCGCTGGTCCGCCGCACCGCGGACACGATC 1 cds-WP_067440060.1 ( 25) CGTTCTAGCTGGCGCGCGCCGACGCCCTTGAGCGGGACCTTGGCCCGAGG 1 rplX ( 22) TCTTCGGCCCGGTGGGTCGTGAGCTGCGCGAGAAGAAGTTCATGAAGATC 1 sigM ( 14) ACTACAGCGAGTCCGGCTACAAGCAGGCCATCACCGACGTGAAGTTCACG 1 mfd ( 31) ACGACATGCCCCCGGCCGCCGCGCGCGTCGGGCGATTCGCGTTGCCCACC 1 cds-WP_067437350.1 ( 6) AGGCCCGCCCGGCGGTCGTCGTCGACCTCGTTGTCAGTGGCAGCCCGCAC 1 cds-WP_225988380.1 ( 23) AGCCGGTACCGGCCCGCTATCAGCACCTGTTCGTCATCCTCATGCCGTAA 1 cds-WP_067437440.1 ( 3) ACGCCGACATCCTCCGGGAGTCGCTGGACGGCAGGACGGCCTTCGAGCTG 1 rpsR_2 ( 44) ACGCCTGGAAGCAGCTGCCGCCCGCCTTCGACACCCTCCTGGAGGTCTGA 1 cds-WP_067440175.1 ( 38) CGGCGTGGCGGGTACTCTCCGAGTGGCTGCAGTACCCCGTCGACCTCTTC 1 rpmF ( 49) TGCTCTAGTCGCCGCGGCTTCGGCCGCAGCTGCTCTTCGTCCTCTTCATC 1 cds-WP_067425945.1 ( 15) CGGCGGTCCGGGCCGCCGCCCCGGTGCCCGTGCCGGCCGCGCGGGCCCTG 1 cds-SLCG_RS43880 ( 48) TGGCCGTGAAGCGGTACGCCCCGTTTCTCCAGATGGCGGTGCGCCACTGC 1 rpsG ( 39) AGGGTGTGAAGAACCGCAAGCAGGCCCGCAGCCGCTACGGCGCCAAGAAG 1 cds-WP_067428521.1 ( 2) AGGACCACCGCCTCCGCCACCAGTACCTGCATTGCTACTTCGTCAGCTAG 1 cds-WP_067443350.1 ( 2) CCCACGGCCGGCTCCATGACGCCCTGCTCCGCCGAAGCGTTATGCCGCAA 1 cds-WP_067442898.1 ( 1) ACCTGCTGGACCCCTCCGACCCGTTCCCGGCCGGGTTCGTGCTGTAGACG 1 rplC ( 27) ACTCTCTGATGCGACTCGACCTCCCGGCCGGTGTCGACATCGAGATCAAG 1 cds-WP_067437799.1 ( 13) TGGTGATCCAGCGGTTCTGGTCGCTGGACCTGCTGAGCGGCTCGATCAAG 1 cds-WP_067436135.1 ( 13) AGCGCGACTTCCCGCACCCGCAGTCGATGCTGGGCTGCGTCCGCGTATAG 1 cds-WP_067440057.1 ( 43) GGGCGCGGTACCGGCCGGACTAGCTGCTCGACCGGTGGCGCGGGGCCTTC 1 rplE ( 19) AGGTCGTCACGCGTGTCGGTTACCGCTTCGACGACGAGGGCAACAAGATC 1 rplW ( 28) TCTTCACCCAGGCCGCTTTCGAGTCCTTCGTGTCCGGCCCGCAGGCCACC 1 cds-WP_067427582.1 ( 49) GATGCTTCCCGCACCCCGACTTGTCCAACCACCCGCCCGCCGAGGAGACC 1 cds-WP_067425730.1 ( 5) TCGCCCACCCGACGTTCGGCATGCCGAAGCGCAAGCGCCGCCTGGCCACC 1 cds-WP_067430250.1 ( 15) ACTGCGGGCGCGTGCTCGTCTACCACTTCCTGCGCAACAAGCTGCGTGCC 1 rplR ( 3) TCCGCAAGCTGCGCAAGCCCGACCCGTACAAGGCCAAGGGTGTCAAGTAC 1 cds-WP_067428527.1 ( 2) ACCCCTGCCACGCCAGCCAGCCCCACATCCGCCGCCTGCGGGAGCAGACG 1 rplO ( 43) TCCGCGGAATGGTGCACACCGTCCGCCACCTCGTGACGGTCGAGGAGGTC 1 rpsS ( 27) CGCCGAAGAAGGCTTCGAACAAGTACATCGTCCGCCGCCGCAAGACGAAC 1 rplA ( 32) TCGTAGAACCGCCGTGGCAGGGCCTGCTCGGCCCGTACCACGACTCCTCA 1 cds-WP_067427562.1 ( 19) CAGGCGGCAAGCCGATCCACGAGTGGCTCGAACTGCGCCCGTTCTACTCC 1 cds-WP_079164929.1 ( 17) ACGGGGAGCTGGGGCGGCTTGCGCTACACGAGGTGAGTGACGAGGTCTTC 1 rpmA ( 25) AGGGCCACCGCCAGCAGTACACGGCGATCAAGGTCACTGAGATCCCCGCG 1 cds-WP_067432337.1 ( 6) AGGCCGTGCCGGCCGGGGCGGCCGCCGGTGAGCGCTACGCGGCGGCCCAG 1 cds-WP_079164394.1 ( 8) TGCTTGAGAGGGGCCTGCTTGAGCTGCTTGAGCGGCGCCCGGAGCTACAG 1 cds-WP_067425664.1 ( 6) ACGGGCAGAAGGGGCGGTACCTGCTGCGGCGCCACAGGGCCCAGCACCGG 1 cds-WP_067426874.1 ( 15) GGTTCGCACGGTAGTTCGTCCCGTGGCTCCAGCGCCGGCGGGAGATCCCG 1 cds-WP_079164567.1 ( 32) CGCCAGTCCCGCCAGTCGGGGTGCCGGTCGGCGTCGTCGTCGGCATGGTC 1 cds-WP_067437553.1 ( 22) AGGCCGACCTCGCCGAGGCCCTGGCCTTCACCCGCCTCCATCTGGCCTCG 1 rpsI ( 6) CGCACGCTGCCCAGCAGCCGGTGCCGTTCGAGATCACCCAGGTCGCGCAG 1 cds-WP_264086306.1 ( 27) GGGGCCCGAGGCACCACCTGGGCCAGTTCACGCTCTGCCTCAGGCCGCAG 1 cds-WP_067436255.1 ( 34) GGTACGCTCCGTCGCTCGCGCTGTACCGCCACGCGTACGCCACCGACAAG 1 cds-WP_225988251.1 ( 48) CGCATGAGCTGGCGCAGGAGGAGCCGCCGTGGCGCAGCGGCAGCGACGTG 1 cds-WP_067437717.1 ( 3) GGCGCCAGAAGGCGCTGGAGGCGCTGCGCGCGGCGGCGCCGGTGGCCGTC 1 nusB ( 46) TCTAGTTCCAGCTGTGGGCGTGCTCGCTGATGGAGCCGGCCCACTTGTCG 1 cds-WP_067427514.1 ( 3) ACTCCGACTGGCTGGGCCGCGCCCTGCTCAAGGGGTGAGGCACCGCGGCG 1 cds-SLCG_RS42100 ( 42) CGTGGCTCGAGCGGCTGGACAAGTGGCCGGACTGGGGGCTCGTCACCCTG 1 cds-WP_067438764.1 ( 17) AGTGGACGCGGAGGTGTGGGAGGCGGCTCGAGACGTGTGTGCTGCATATG 1 cds-WP_067426775.1 ( 9) TGTGTGGCAGGCTGGACGGGGACCACCGGGACAGGGTTAGCCTCTAGCTG 1 cds-WP_067443051.1 ( 37) CGCTCCCGCTCCTCGTCGAAGCGCTCTTCGTGCCCTTGCACGTCCCTTCA 1 cds-WP_079164689.1 ( 43) ACCGCCCGCGCGCCCGTGCGCCGCCGGTCCGGATCACGGATGACGAGAAG 1 cds-WP_182449206.1 ( 19) GCCGCGGGACCCCCGACCGGCACCCGCTCGCGCTCCACGCCCGCCTCTGG 1 cds-WP_067441186.1 ( 13) CCCACACGGCCGGCCGCGACACCGCGGTCATGCGGCCGGTGAAGCCGAAG 1 cds-WP_067425942.1 ( 14) CGGCCGTGCCCGTGGCCCCGCCGCCGGGCCTGGCGGCCGTCCTGCCTGTG 1 cds-WP_067439579.1 ( 22) CCTACTGCCCCCTGTCCTAAGCGTCCTACGGCCTGTGCGGGGGCCACGCC 1 cds-WP_067430650.1 ( 8) GGTCCCACCCGGCCCGCGACCAGTGCAGACAGCACAAGCAGCAGTACCCG 1 cds-WP_170068280.1 ( 2) ACTTCTGGACCCTCCTTACCCGGCTGCAGCGGTGGGTCCGGGTCCCGCCG 1 cds-WP_067435720.1 ( 21) CCGCCCGCACCACCACCGCGGCGGTCCGCCTCCGGCTCGACCGGTTCCCC 1 rpsR ( 3) CGTCGCCACCGCCGCCGATGAGCCTGCTCGGGGGGAAGATCCGGAAGCCC 1 cds-WP_067434373.1 ( 26) GGCGGGGGAGGACGAGGCTGAAGCCGTAGCGGGGGGACCGGCTGAAGCTG 1 cds-WP_067435216.1 ( 15) AAGGAGGCCACGCGTCGGCCGCGCCACTCCTGCGGGGCGCCCGGGCCGAG 1 cds-WP_107406550.1 ( 34) ACCCCCTGTGGAGGCCCGACGCGCAGCTTGGCGCCGTGCGCTGGGCCCCG 1 cds-WP_067436843.1 ( 29) CCTTGAGTCGGACCTCCGGCGTCCCCCTCAGGACGCTTGTCCACGCGGAC 1 cds-WP_067438001.1 ( 37) TCGCGCGACCGCGGGACCCGTGGCGGCTCCTGCGCTTCCTGTGGCTGGAC 1 rpsQ ( 31) AGGACATCGCGCGGATCTACACCCTGATGCGTGAGCGCGAGCTGGGCATC 1 cds-WP_067438215.1 ( 11) CGGTGTGCTCCGCGGTCGTCGTGTCATCGGTGTACGTCGTCATGTCCTCG 1 cds-WP_067428043.1 ( 25) CCGTGGCCGCGCTCGCCGCCGCGGCCGACGACCACACCGACCGCACCACC 1 cds-WP_067439704.1 ( 7) TCCGCGAGCGGGACTAGCCAGACCAGTACGGCAAGCAGATGCCGATGTTG 1 cds-WP_067439461.1 ( 41) GGGGCGAGGGCGCCACCGATGCCCCGGCCGACGGCACGACCGACAAGAAG 1 cds-WP_067425097.1 ( 31) GGTCTCGCACGCTCCACGACGGGCGGCTGGACGCGGCAAGGCAGGCCCGG 1 cds-WP_067431274.1 ( 24) TCCCGAACTCGCAGCTTCTCCCCCACGCCGACGCCGGTGTGGGGGAGAAG 1 cds-WP_067440389.1 ( 5) CCCGGCCCACCCGGCCCGCCCAGCTCGCCCACCACGCCGCTAACCACTGG 1 cds-WP_067442051.1 ( 49) CGCTCCCCCGGTCCTGGGGCGAGTCGGTCGCGAGGGTGAAGGAGCCGCAA 1 cds-WP_067429415.1 ( 31) TGGCGTTGCCGACCGGTTACCGGGCCCTCACGAAGATCGCGGAGAGCGCC 1 rpmC ( 10) ACGAGAAGATCGCCCGTGAGGCGCTGACTCGTGCGGCCCACAAGCTGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 50 n= 39525 bayes= 9.68979 E= 2.2e-020 129 -35 -146 14 -230 37 77 -1344 -1344 -25 46 68 40 -3 -30 7 -197 84 1 -173 -5 -30 30 -7 66 -107 -7 54 -113 37 57 -273 70 80 -184 -151 10 24 -35 0 -1344 -25 118 -1344 -13 54 1 -200 -30 49 -99 44 -271 27 82 -332 -60 49 -30 -7 10 -46 -46 93 -1344 87 1 -100 -113 -30 75 -62 123 -30 -107 -7 -230 82 1 -132 -71 -25 75 -115 99 -7 -125 20 -329 -7 107 -1344 -1344 97 -107 27 10 27 -107 59 -271 13 93 -432 -49 73 -84 -15 -30 -107 -125 166 -429 117 -57 -173 -21 5 60 -273 116 -216 -46 72 -429 40 70 -200 16 49 -16 -151 3 -57 20 38 -329 43 77 -1344 29 -46 -7 44 61 -63 -35 59 -271 107 -46 -151 -71 -11 82 -273 3 -35 -40 85 -329 65 40 -173 10 24 20 -151 113 -157 -77 81 -1344 24 95 -1344 29 1 1 -41 99 20 -257 32 -271 63 40 -173 66 -7 -116 59 99 -16 -146 44 -149 9 88 -1344 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 50 nsites= 111 E= 2.2e-020 0.432432 0.252252 0.117117 0.198198 0.036036 0.414414 0.549550 0.000000 0.000000 0.270270 0.441441 0.288288 0.234234 0.315315 0.261261 0.189189 0.045045 0.576577 0.324324 0.054054 0.171171 0.261261 0.396396 0.171171 0.279279 0.153153 0.306306 0.261261 0.081081 0.414414 0.477477 0.027027 0.288288 0.558559 0.090090 0.063063 0.189189 0.378378 0.252252 0.180180 0.000000 0.270270 0.729730 0.000000 0.162162 0.468468 0.324324 0.045045 0.144144 0.450450 0.162162 0.243243 0.027027 0.387387 0.567568 0.018018 0.117117 0.450450 0.261261 0.171171 0.189189 0.234234 0.234234 0.342342 0.000000 0.585586 0.324324 0.090090 0.081081 0.261261 0.540541 0.117117 0.414414 0.261261 0.153153 0.171171 0.036036 0.567568 0.324324 0.072072 0.108108 0.270270 0.540541 0.081081 0.351351 0.306306 0.135135 0.207207 0.018018 0.306306 0.675676 0.000000 0.000000 0.630631 0.153153 0.216216 0.189189 0.387387 0.153153 0.270270 0.027027 0.351351 0.612613 0.009009 0.126126 0.531532 0.180180 0.162162 0.144144 0.153153 0.135135 0.567568 0.009009 0.720721 0.216216 0.054054 0.153153 0.333333 0.486486 0.027027 0.396396 0.072072 0.234234 0.297297 0.009009 0.423423 0.522523 0.045045 0.198198 0.450450 0.288288 0.063063 0.180180 0.216216 0.369369 0.234234 0.018018 0.432432 0.549550 0.000000 0.216216 0.234234 0.306306 0.243243 0.270270 0.207207 0.252252 0.270270 0.027027 0.675676 0.234234 0.063063 0.108108 0.297297 0.567568 0.027027 0.180180 0.252252 0.243243 0.324324 0.018018 0.504505 0.423423 0.054054 0.189189 0.378378 0.369369 0.063063 0.387387 0.108108 0.189189 0.315315 0.000000 0.378378 0.621622 0.000000 0.216216 0.324324 0.324324 0.135135 0.351351 0.369369 0.054054 0.225225 0.027027 0.495495 0.423423 0.054054 0.279279 0.306306 0.144144 0.270270 0.351351 0.288288 0.117117 0.243243 0.063063 0.342342 0.594595 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MSBNSSNSMVGSYSSNSGMSSHGCYSCTCSDSSBSNNCSNSVWSVHSHHS MEME-1 regular expression -------------------------------------------------------------------------------- [AC][GC][GTC][CGA][CG][GC][GAT][GC][CA][CG][GC][CG][CT][GC][CG][TCG][CG][GC][AC][CG][GC][ACT][GC][CT][CT][GC]CT[CG][GC][ATG][GC][CG][GTC][GC][GTCA][ATGC][CG][GC][TCG][CG][CG][AT][GC][CGA][CAT][CG][CAT][ACT][GC] -------------------------------------------------------------------------------- Time 154.39 secs. ******************************************************************************** ******************************************************************************** MOTIF TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 width = 40 sites = 7 llr = 208 E-value = 6.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :31:11:6613a4:664a:941631344:41::14:1:19 pos.-specific C 1331:41::6::43:4::91:1:696117:13:9:14761 probability G :31::374:31::7::6::::711::11::331:::::1: matrix T 9149911:4:6:1:4:::1:6:3::13336449:69431: bits 2.5 * * 2.2 * * 2.0 * * * 1.7 * ** * * * * * * Relative 1.5 * ** * * * * ** * * ** * Entropy 1.2 * ** ** * ** **** * * **** * (42.8 bits) 1.0 * ** ** ** ******* * * ** **** * * 0.7 * ** ** *********** * ** ** ****** * 0.5 * ** ************************ ******* * 0.2 * *** ********************************** 0.0 ---------------------------------------- Multilevel TATTTCGAACTAAGAAGACATGACCCAACTTTTCTTCCCA consensus CC G GTGA CCTCA A TA ATTTAGC A TT sequence G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------------------------------- cds-WP_067434389.1-2 39 2.88e-19 GACTTGCCAT TCTTTGGATCTACCAAGACATGACCCAACAGTTCTTCCCA CCCAGCCAGC cds-WP_067434389.1 39 2.88e-19 GACTTGCCAC TCTTTGGATCTACCAAGACATGACCCAACAGTTCTTCCCA CCCAGCCAGC cds-WP_067442498.1 54 1.50e-15 TGTCCTTGCG TACTTCTGAGTAAGTAGACAAGTACACACTACTCATTCTA TGGGCGG cds-WP_067426186.1 46 2.01e-13 TCGGGCGGCC CACTTAGGACAAAGAAAATAACTGCCGCCTTTTCTTCTCA GGATCCAAGG cds-WP_067427258.1 12 7.59e-13 GCCTTGCACT TGATTCGATAGACGTCAACATAGACATTCTTCGAATTCGA GAAGGCAGCG cds-WP_067441751.1 4 8.53e-13 ACA TTTTTCGGACAATGACGACCAGACCTTTTTCGTCACTCCC CAGAAGGCGC cds-WP_067428396.1 52 1.14e-12 CCACGTGGGG TGGCATCAAGTAAGTCAACATGACACAGTATGTCTTATAA CCTGCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_067434389.1-2 2.9e-19 38_[+2]_22 cds-WP_067434389.1 2.9e-19 38_[+2]_22 cds-WP_067442498.1 1.5e-15 53_[+2]_7 cds-WP_067426186.1 2e-13 45_[+2]_15 cds-WP_067427258.1 7.6e-13 11_[+2]_49 cds-WP_067441751.1 8.5e-13 3_[+2]_57 cds-WP_067428396.1 1.1e-12 51_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA width=40 seqs=7 cds-WP_067434389.1-2 ( 39) TCTTTGGATCTACCAAGACATGACCCAACAGTTCTTCCCA 1 cds-WP_067434389.1 ( 39) TCTTTGGATCTACCAAGACATGACCCAACAGTTCTTCCCA 1 cds-WP_067442498.1 ( 54) TACTTCTGAGTAAGTAGACAAGTACACACTACTCATTCTA 1 cds-WP_067426186.1 ( 46) CACTTAGGACAAAGAAAATAACTGCCGCCTTTTCTTCTCA 1 cds-WP_067427258.1 ( 12) TGATTCGATAGACGTCAACATAGACATTCTTCGAATTCGA 1 cds-WP_067441751.1 ( 4) TTTTTCGGACAATGACGACCAGACCTTTTTCGTCACTCCC 1 cds-WP_067428396.1 ( 52) TGGCATCAAGTAAGTCAACATGACACAGTATGTCTTATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 40 n= 47275 bayes= 13.9437 E= 6.9e-006 -945 -117 -945 225 69 -17 -17 -33 -31 -17 -117 125 -945 -117 -945 225 -31 -945 -945 225 -31 42 -17 -33 -945 -117 115 -33 169 -945 41 -945 169 -945 -945 125 -31 83 -17 -945 69 -945 -117 167 250 -945 -945 -945 127 42 -945 -33 -945 -17 115 -945 169 -945 -945 125 169 42 -945 -945 127 -945 83 -945 250 -945 -945 -945 -945 141 -945 -33 227 -117 -945 -945 127 -945 -945 167 -31 -117 115 -945 169 -945 -117 67 69 83 -117 -945 -31 141 -945 -945 69 83 -945 -33 127 -117 -117 67 127 -117 -117 67 -945 115 -945 67 127 -945 -945 167 -31 -117 -17 125 -945 -17 -17 125 -945 -945 -117 225 -31 141 -945 -945 127 -945 -945 167 -945 -117 -945 225 -31 42 -945 125 -945 115 -945 67 -31 83 -117 -33 227 -117 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 40 nsites= 7 E= 6.9e-006 0.000000 0.142857 0.000000 0.857143 0.285714 0.285714 0.285714 0.142857 0.142857 0.285714 0.142857 0.428571 0.000000 0.142857 0.000000 0.857143 0.142857 0.000000 0.000000 0.857143 0.142857 0.428571 0.285714 0.142857 0.000000 0.142857 0.714286 0.142857 0.571429 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.428571 0.142857 0.571429 0.285714 0.000000 0.285714 0.000000 0.142857 0.571429 1.000000 0.000000 0.000000 0.000000 0.428571 0.428571 0.000000 0.142857 0.000000 0.285714 0.714286 0.000000 0.571429 0.000000 0.000000 0.428571 0.571429 0.428571 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.857143 0.142857 0.000000 0.000000 0.428571 0.000000 0.000000 0.571429 0.142857 0.142857 0.714286 0.000000 0.571429 0.000000 0.142857 0.285714 0.285714 0.571429 0.142857 0.000000 0.142857 0.857143 0.000000 0.000000 0.285714 0.571429 0.000000 0.142857 0.428571 0.142857 0.142857 0.285714 0.428571 0.142857 0.142857 0.285714 0.000000 0.714286 0.000000 0.285714 0.428571 0.000000 0.000000 0.571429 0.142857 0.142857 0.285714 0.428571 0.000000 0.285714 0.285714 0.428571 0.000000 0.000000 0.142857 0.857143 0.142857 0.857143 0.000000 0.000000 0.428571 0.000000 0.000000 0.571429 0.000000 0.142857 0.000000 0.857143 0.142857 0.428571 0.000000 0.428571 0.000000 0.714286 0.000000 0.285714 0.142857 0.571429 0.142857 0.142857 0.857143 0.142857 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TNYTTSGRWSWAMGWMRACAWGWMCMWWCWKBTCWTYCCA MEME-2 regular expression -------------------------------------------------------------------------------- T[ACG][TC]TT[CG]G[AG][AT][CG][TA]A[AC][GC][AT][AC][GA]ACA[TA]G[AT][CA]C[CA][AT][AT][CT][TA][TG][TCG]TC[TA]T[CT][CT]CA -------------------------------------------------------------------------------- Time 273.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 width = 37 sites = 7 llr = 195 E-value = 4.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::66:61:44:4:1163:37:::7::64:1::7111a pos.-specific C 74:3:3411113::1:47:113711:::337:::9:: probability G :34111461411:::43:::313:7::6661:31:1: matrix T 33::9::33:71a97::37166:11a4:1:1a:7:7: bits 2.5 * * * * 2.2 * * * * 2.0 ** * * * 1.7 * ** * * * Relative 1.5 * ** * ** ** * Entropy 1.2 * * **** ** * ** ****** (40.2 bits) 1.0 * * * * **** *** * *** ****** 0.7 * **** * **** ******* *** ****** 0.5 * **** **** **** ******************** 0.2 ************************************* 0.0 ------------------------------------- Multilevel CCAATACGAATATTTACCTATTCAGTAGGGCTATCTA consensus TGGC CGTTG C GATA GCG TACC G sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------------------- cds-WP_067427576.1 52 1.42e-16 GCGCGCTGGC CGAATCGTCATCTTTACCTATCCAGTAAGGCTATCAA TCTGACCGGC cds-WP_067426454.1 52 2.06e-15 CGACCTCGGT CCGATCGTAGTTTTTACCTATCCAGTTAGGCTAACGA CCCGACCGTC cds-WP_067425724.1 28 8.75e-15 ATAGGCCTGG CCGCTAGGTATATTTGCCTAGTGACTAGGCTTATATA CCTGGTGGCT cds-WP_067424969.1 5 6.20e-14 TATG TTACTACCAGCATTAAATTTTTCAGTTGGAGTATCTA CAGCTAGCTG cds-WP_079165091.1 40 1.40e-12 AACGGCAAGC TGGATAAGGCTATATAGCAACTCCGTAGCGCTGTCTA GTTGCTACCT cds-WP_067427005.1 39 2.73e-12 CAGGTTGCTG CTAAGGCGTAGCTTTGGCTAGTCTTTAGCGCTAGCTA GCTACCGCGC cds-WP_067434332.1 33 4.00e-12 AGAGCCACCT CCAGTACGAGTGTTCGATACTGGAGTTATCCTGTCTA GCACAGGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_067427576.1 1.4e-16 51_[+3]_12 cds-WP_067426454.1 2.1e-15 51_[+3]_12 cds-WP_067425724.1 8.8e-15 27_[+3]_36 cds-WP_067424969.1 6.2e-14 4_[+3]_59 cds-WP_079165091.1 1.4e-12 39_[+3]_24 cds-WP_067427005.1 2.7e-12 38_[+3]_25 cds-WP_067434332.1 4e-12 32_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA width=37 seqs=7 cds-WP_067427576.1 ( 52) CGAATCGTCATCTTTACCTATCCAGTAAGGCTATCAA 1 cds-WP_067426454.1 ( 52) CCGATCGTAGTTTTTACCTATCCAGTTAGGCTAACGA 1 cds-WP_067425724.1 ( 28) CCGCTAGGTATATTTGCCTAGTGACTAGGCTTATATA 1 cds-WP_067424969.1 ( 5) TTACTACCAGCATTAAATTTTTCAGTTGGAGTATCTA 1 cds-WP_079165091.1 ( 40) TGGATAAGGCTATATAGCAACTCCGTAGCGCTGTCTA 1 cds-WP_067427005.1 ( 39) CTAAGGCGTAGCTTTGGCTAGTCTTTAGCGCTAGCTA 1 cds-WP_067434332.1 ( 33) CCAGTACGAGTGTTCGATACTGGAGTTATCCTGTCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 37 n= 49600 bayes= 13.3963 E= 4.1e-004 -945 115 -945 67 -945 42 -17 67 169 -945 41 -945 169 -17 -117 -945 -945 -945 -117 225 169 -17 -117 -945 -31 42 41 -945 -945 -117 83 67 127 -117 -117 67 127 -117 41 -945 -945 -117 -117 199 127 -17 -117 -33 -945 -945 -945 247 -31 -945 -945 225 -31 -117 -945 199 169 -945 41 -945 69 42 -17 -945 -945 115 -945 67 69 -945 -945 199 201 -117 -945 -33 -945 -117 -17 167 -945 -17 -117 167 -945 115 -17 -945 201 -117 -945 -33 -945 -117 115 -33 -945 -945 -945 247 169 -945 -945 125 127 -945 83 -945 -945 -17 83 -33 -31 -17 83 -945 -945 115 -117 -33 -945 -945 -945 247 201 -945 -17 -945 -31 -945 -117 199 -31 141 -945 -945 -31 -945 -117 199 250 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 37 nsites= 7 E= 4.1e-004 0.000000 0.714286 0.000000 0.285714 0.000000 0.428571 0.285714 0.285714 0.571429 0.000000 0.428571 0.000000 0.571429 0.285714 0.142857 0.000000 0.000000 0.000000 0.142857 0.857143 0.571429 0.285714 0.142857 0.000000 0.142857 0.428571 0.428571 0.000000 0.000000 0.142857 0.571429 0.285714 0.428571 0.142857 0.142857 0.285714 0.428571 0.142857 0.428571 0.000000 0.000000 0.142857 0.142857 0.714286 0.428571 0.285714 0.142857 0.142857 0.000000 0.000000 0.000000 1.000000 0.142857 0.000000 0.000000 0.857143 0.142857 0.142857 0.000000 0.714286 0.571429 0.000000 0.428571 0.000000 0.285714 0.428571 0.285714 0.000000 0.000000 0.714286 0.000000 0.285714 0.285714 0.000000 0.000000 0.714286 0.714286 0.142857 0.000000 0.142857 0.000000 0.142857 0.285714 0.571429 0.000000 0.285714 0.142857 0.571429 0.000000 0.714286 0.285714 0.000000 0.714286 0.142857 0.000000 0.142857 0.000000 0.142857 0.714286 0.142857 0.000000 0.000000 0.000000 1.000000 0.571429 0.000000 0.000000 0.428571 0.428571 0.000000 0.571429 0.000000 0.000000 0.285714 0.571429 0.142857 0.142857 0.285714 0.571429 0.000000 0.000000 0.714286 0.142857 0.142857 0.000000 0.000000 0.000000 1.000000 0.714286 0.000000 0.285714 0.000000 0.142857 0.000000 0.142857 0.714286 0.142857 0.857143 0.000000 0.000000 0.142857 0.000000 0.142857 0.714286 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CBRMTMSKWRTMTTTRVCTAKYCAGTWRSSCTATCTA MEME-3 regular expression -------------------------------------------------------------------------------- [CT][CGT][AG][AC]T[AC][CG][GT][AT][AG]T[AC]TTT[AG][CAG][CT][TA]A[TG][TC][CG]AGT[AT][GA][GC][GC]CT[AG]TCTA -------------------------------------------------------------------------------- Time 391.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- cds-WP_067424969.1 8.86e-11 4_[+3(6.20e-14)]_59 cds-WP_107406526.1 9.62e-01 100 cds-WP_067424987.1 1.07e-01 100 cds-WP_067425001.1 3.16e-04 48_[+1(1.82e-06)]_2 cds-WP_067425004.1 3.64e-01 100 cds-WP_225988185.1 1.46e-02 100 cds-WP_067425052.1 5.67e-01 100 cds-WP_067425065.1 4.00e-01 100 cds-WP_067444686.1 3.00e-01 100 cds-WP_067425097.1 4.14e-02 100 cds-WP_159425310.1 9.02e-01 100 cds-WP_067425135.1 8.80e-03 100 cds-WP_225988189.1 1.91e-03 46_[+1(5.96e-07)]_4 cds-WP_067425196.1 5.72e-01 100 cds-WP_067425225.1 1.97e-02 48_[+2(5.72e-05)]_12 cds-WP_067425243.1 3.53e-01 100 cds-WP_225988477.1 4.95e-01 100 cds-WP_067425367.1 8.28e-01 100 cds-WP_067425381.1 5.29e-01 100 cds-SLCG_RS43870 1.09e-03 30_[+1(2.05e-06)]_20 sigJ 3.64e-01 100 cds-WP_067425469.1 9.29e-01 100 cds-WP_067425491.1 2.11e-01 100 cds-WP_067425496.1 1.11e-01 100 cds-WP_067425512.1 9.53e-01 100 cds-WP_067425534.1 7.27e-01 100 cds-SLCG_RS43880 1.30e-02 47_[+1(6.38e-06)]_3 cds-WP_079164354.1 8.68e-01 100 cds-WP_067425582.1 5.98e-01 100 cds-WP_067425585.1 3.98e-01 100 cds-WP_067425616.1 5.23e-01 100 cds-WP_067425664.1 2.80e-02 5_[+1(1.80e-05)]_45 cds-WP_067425714.1 5.43e-01 100 cds-WP_067425724.1 7.84e-11 27_[+3(8.75e-15)]_36 cds-WP_067425730.1 1.47e-02 4_[+1(1.08e-05)]_46 cds-WP_067425794.1 2.80e-01 100 cds-WP_067425822.1 4.02e-01 100 cds-WP_067425829.1 2.62e-01 100 cds-WP_067425930.1 8.02e-01 100 cds-WP_067444817.1 8.43e-01 100 cds-WP_067425942.1 3.43e-02 13_[+1(4.26e-05)]_37 cds-WP_067425945.1 7.72e-03 14_[+1(5.72e-06)]_36 cds-WP_067425979.1 3.41e-01 100 cds-WP_067425991.1 5.54e-01 100 cds-WP_067426030.1 4.06e-01 100 cds-WP_067426040.1 4.31e-01 100 cds-WP_067444835.1 5.91e-03 100 cds-WP_067426071.1 2.12e-01 100 cds-WP_067426122.1 5.62e-01 100 cds-WP_067426136.1 1.84e-01 100 cds-WP_067426159.1 7.67e-01 100 cds-WP_067426186.1 2.32e-09 45_[+2(2.01e-13)]_15 cds-WP_067426247.1 3.73e-01 100 cds-WP_067426250.1 8.64e-02 100 cds-WP_067426269.1 7.31e-01 100 cds-WP_067426308.1 6.01e-01 100 cds-WP_067426314.1 3.88e-01 100 cds-WP_067426323.1 7.33e-01 100 cds-WP_067426347.1 5.41e-01 100 cds-WP_114604611.1 8.44e-01 100 cds-SLCG_RS03305 5.04e-01 100 cds-WP_067426400.1 6.34e-01 100 cds-WP_079165068.1 2.92e-01 100 cds-WP_067444882.1 4.45e-01 100 cds-WP_067426424.1 8.39e-02 100 cds-WP_067444891.1 6.83e-01 100 cds-WP_067426454.1 2.75e-11 51_[+3(2.06e-15)]_12 cds-WP_107406544.1 8.27e-01 100 cds-WP_067426478.1 6.18e-01 100 cds-WP_067426500.1 2.96e-01 100 cds-WP_067444913.1 9.24e-01 100 cds-WP_067426574.1 6.51e-02 100 cds-WP_067426580.1 5.60e-01 100 cds-WP_225988226.1 2.20e-01 100 cds-WP_067426596.1 5.32e-02 100 cds-WP_067444927.1 4.72e-01 100 cds-WP_067426608.1 2.30e-01 100 cds-WP_225988228.1 3.93e-01 100 cds-WP_079164389.1 3.03e-01 100 cds-WP_211292750.1 7.67e-01 100 cds-WP_159425321.1 6.42e-01 100 cds-WP_211292751.1 9.96e-01 100 cds-SLCG_RS04025 1.69e-01 100 cds-WP_067426694.1 4.15e-01 100 cds-WP_067426702.1 8.99e-01 100 cds-WP_067426714.1 6.02e-01 100 cds-WP_067426725.1 6.93e-01 100 cds-WP_079164394.1 9.98e-04 7_[+1(1.80e-05)]_43 cds-WP_067426775.1 2.36e-04 8_[+1(3.89e-05)]_42 cds-WP_067426778.1 4.69e-01 100 cds-WP_067426849.1 4.32e-02 18_[+2(6.79e-05)]_42 cds-WP_067426859.1 4.11e-01 100 cds-WP_067426874.1 7.68e-03 14_[+1(1.99e-05)]_36 cds-WP_067426905.1 2.42e-01 100 cds-WP_079164397.1 7.53e-01 100 cds-WP_067426921.1 1.40e-01 100 cds-WP_107406550.1 1.03e-02 33_[+1(6.68e-05)]_17 rho 7.77e-01 100 cds-WP_067426973.1 1.98e-01 100 cds-WP_067444957.1 3.10e-01 100 cds-WP_067427002.1 6.80e-01 100 cds-WP_067427005.1 1.07e-08 38_[+3(2.73e-12)]_25 cds-WP_264086306.1 1.63e-02 26_[+1(2.42e-05)]_24 cds-WP_067427133.1 1.59e-01 100 cds-WP_067427150.1 8.59e-01 100 cds-WP_067427153.1 3.28e-01 100 cds-WP_067427178.1 3.97e-01 100 cds-WP_067427222.1 6.08e-01 100 cds-WP_067427225.1 3.67e-01 100 cds-WP_079164410.1 1.34e-01 100 cds-WP_067427251.1 7.48e-01 100 cds-WP_067427258.1 1.12e-08 11_[+2(7.59e-13)]_49 cds-WP_067427265.1 8.04e-01 100 cds-WP_225988240.1 7.30e-05 13_[+1(8.72e-08)]_37 cds-WP_067427286.1 2.53e-01 100 cds-WP_067427288.1 1.76e-01 100 cds-WP_067427332.1 8.99e-01 100 cds-WP_067427352.1 1.10e-01 100 cds-WP_079164416.1 1.35e-01 100 cds-WP_067427393.1 4.22e-01 100 cds-WP_067427432.1 8.55e-01 100 cds-WP_067427464.1 9.12e-01 100 cds-WP_067445030.1 6.41e-01 100 cds-WP_225988251.1 1.86e-02 47_[+1(2.67e-05)]_3 cds-WP_067427498.1 2.25e-01 100 cds-WP_067427514.1 3.43e-02 2_[+1(3.22e-05)]_48 cds-WP_067427533.1 7.13e-01 100 cds-WP_067427548.1 5.77e-01 100 cds-WP_067427556.1 8.16e-01 100 cds-WP_067427562.1 5.85e-03 18_[+1(1.33e-05)]_32 cds-WP_225988256.1 2.82e-01 100 cds-WP_067427573.1 7.71e-03 34_[+3(1.40e-05)]_29 cds-WP_067427576.1 1.07e-12 51_[+3(1.42e-16)]_12 cds-WP_067427582.1 3.66e-03 48_[+1(1.08e-05)]_2 cds-WP_067427609.1 2.51e-04 30_[+1(9.90e-07)]_20 cds-WP_067427631.1 3.90e-01 100 cds-WP_237281989.1 1.22e-01 100 cds-WP_067427645.1 4.85e-01 100 cds-WP_067427657.1 4.33e-02 100 cds-WP_067427665.1 5.14e-01 100 cds-WP_067427673.1 9.28e-01 100 cds-WP_067427700.1 2.06e-01 100 cds-WP_067427702.1 4.87e-01 100 cds-WP_067427745.1 5.94e-02 100 cds-WP_067427755.1 7.05e-01 100 cds-WP_067427768.1 5.10e-01 100 cds-WP_067427770.1 5.65e-01 100 cds-WP_067427775.1 1.44e-01 100 cds-WP_067427794.1 7.72e-01 100 cds-WP_067445099.1 8.11e-01 100 cds-WP_067427864.1 4.67e-01 100 cds-WP_067427916.1 2.46e-01 100 cds-WP_067427923.1 1.80e-01 100 cds-WP_067427970.1 1.49e-01 100 cds-WP_225988271.1 7.57e-01 100 cds-WP_067427994.1 7.71e-01 100 cds-WP_067428012.1 9.60e-01 100 cds-WP_225988486.1 3.46e-01 100 cds-WP_067428041.1 2.70e-01 100 cds-WP_067428043.1 6.01e-02 24_[+1(8.67e-05)]_26 cds-WP_067445117.1 8.24e-02 100 cds-WP_067428073.1 9.12e-01 100 cds-WP_067428097.1 7.06e-01 100 cds-WP_067428116.1 1.43e-03 13_[+1(5.24e-07)]_37 cds-WP_067428119.1 7.83e-01 100 cds-WP_067428145.1 6.31e-01 100 cds-WP_067428173.1 9.95e-03 100 cds-WP_067428181.1 9.87e-01 100 cds-WP_225988277.1 1.55e-01 100 cds-WP_067428206.1 1.27e-01 100 cds-WP_067428227.1 7.73e-02 100 cds-WP_067428288.1 1.70e-01 100 cds-WP_067428290.1 7.75e-01 100 cds-WP_067428292.1 8.84e-01 100 cds-WP_079164449.1 3.72e-01 100 cds-WP_067428306.1 9.74e-01 100 cds-WP_067428362.1 1.03e-01 100 cds-WP_067428385.1 4.85e-01 100 cds-WP_067428396.1 5.02e-09 51_[+2(1.14e-12)]_9 tuf 3.23e-01 100 cds-WP_067428458.1 5.87e-03 24_[+2(2.89e-05)]_36 cds-WP_067428521.1 3.53e-05 1_[+1(7.91e-06)]_49 cds-WP_067428527.1 1.65e-03 1_[+1(1.20e-05)]_49 cds-WP_067428532.1 6.74e-01 100 cds-WP_079165091.1 6.59e-09 39_[+3(1.40e-12)]_24 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9.88e-03 16_[+2(2.89e-05)]_44 cds-WP_067436255.1 2.39e-02 33_[+1(2.67e-05)]_17 cds-WP_067436257.1 5.08e-01 100 cds-WP_067436311.1 3.21e-01 100 cds-WP_067436327.1 2.09e-02 100 cds-WP_067445622.1 4.87e-01 100 cds-WP_067436459.1 3.53e-01 100 cds-WP_067436471.1 7.73e-01 100 cds-WP_067436585.1 3.04e-01 100 cds-WP_067436600.1 9.34e-01 100 cds-WP_067436625.1 3.61e-01 100 cds-WP_067436669.1 8.65e-01 100 cds-WP_067436704.1 5.97e-01 100 cds-WP_067436714.1 4.40e-01 100 cds-WP_170068280.1 2.87e-02 1_[+1(5.11e-05)]_49 cds-WP_079164689.1 5.39e-02 42_[+1(4.26e-05)]_8 cds-WP_079165152.1 9.61e-01 100 cds-WP_067436843.1 1.54e-02 28_[+1(7.29e-05)]_22 cds-WP_067436866.1 4.19e-01 100 cds-WP_067437139.1 7.75e-01 100 cds-WP_067437196.1 4.76e-01 100 cds-WP_067437214.1 8.77e-01 100 cds-WP_225988380.1 3.70e-03 22_[+1(5.12e-06)]_28 cds-WP_067437227.1 7.98e-03 100 cds-WP_067437268.1 1.82e-04 45_[+1(1.16e-07)]_5 cds-WP_067437350.1 2.92e-03 5_[+1(5.12e-06)]_45 cds-WP_067437385.1 1.37e-01 100 cds-WP_067437402.1 4.88e-01 100 cds-WP_079165159.1 4.32e-01 100 rpsN 1.96e-04 30_[+1(3.53e-07)]_20 rpmB_2 5.02e-01 100 rpmG 7.15e-01 100 cds-WP_067437424.1 1.69e-01 100 rpsR_2 5.14e-03 43_[+1(5.72e-06)]_7 cds-WP_067437440.1 7.55e-03 2_[+1(5.72e-06)]_48 cds-WP_067445698.1 4.63e-01 100 cds-WP_067437491.1 9.38e-01 100 cds-WP_067437503.1 2.26e-04 45_[+1(3.08e-07)]_5 cds-WP_079164724.1 3.16e-01 100 cds-WP_067437524.1 4.10e-02 35_[+2(3.96e-05)]_25 cds-WP_067437535.1 3.18e-01 100 cds-WP_067437553.1 4.00e-03 21_[+1(2.20e-05)]_29 cds-WP_067437585.1 6.77e-01 100 cds-WP_067437604.1 8.98e-01 100 cds-WP_067437633.1 2.73e-01 100 cds-WP_079164734.1 1.27e-01 100 cds-WP_152039021.1 1.31e-03 9_[+1(5.24e-07)]_41 cds-WP_067437657.1 7.67e-01 100 cds-WP_067445715.1 1.45e-02 100 cds-WP_067437700.1 5.00e-04 4_[+1(9.90e-07)]_46 cds-WP_067437708.1 1.04e-01 100 cds-WP_067437717.1 3.98e-02 2_[+1(2.93e-05)]_48 cds-WP_067437722.1 2.20e-01 100 cds-WP_067445717.1 6.93e-01 100 cds-WP_225988390.1 8.37e-01 100 cds-SLCG_RS26860 1.17e-03 10_[+1(4.03e-07)]_40 cds-WP_067437799.1 1.69e-03 12_[+1(9.77e-06)]_38 cds-WP_067437831.1 8.19e-01 100 rpmG_2 1.05e-01 100 cds-WP_182449176.1 6.45e-01 100 nusG 9.04e-01 100 rplK 6.91e-01 100 rplA 5.21e-03 31_[+1(1.33e-05)]_19 rplJ 6.11e-01 100 rplL 6.39e-01 100 rpoB 4.54e-01 100 cds-WP_067437913.1 7.05e-01 100 rpsL 5.70e-01 100 rpsG 3.67e-03 38_[+1(7.11e-06)]_12 fusA 2.16e-03 5_[+1(2.60e-06)]_45 tuf_2 8.69e-01 100 rpsJ 3.56e-01 100 rplC 1.25e-03 26_[+1(9.77e-06)]_24 rplD 4.49e-01 100 rplW 4.84e-03 27_[+1(1.08e-05)]_23 rplB 7.59e-03 63_[+3(5.46e-05)] rpsS 1.41e-03 26_[+1(1.33e-05)]_24 rplV 4.68e-01 100 rpsC 7.55e-02 100 rplP 6.26e-01 100 rpmC 9.83e-02 100 rpsQ 1.97e-02 30_[+1(7.95e-05)]_20 rplN 8.37e-01 100 rplX 8.94e-04 21_[+1(3.66e-06)]_29 rplE 2.14e-03 18_[+1(1.08e-05)]_32 cds-WP_003956452.1 9.39e-02 100 rpsH 8.20e-01 100 rplF 3.91e-01 100 rplR 6.07e-03 2_[+1(1.20e-05)]_48 rpsE 4.35e-01 100 rpmD 3.39e-01 100 rplO 3.45e-03 42_[+1(1.33e-05)]_8 infA 6.38e-01 100 rpmJ 1.05e-01 100 rpsM 7.43e-01 100 rpsK 1.13e-01 100 cds-WP_003966937.1 6.14e-01 100 rplQ 9.30e-01 100 rplM 3.27e-01 100 rpsI 2.37e-04 5_[+1(2.42e-05)]_45 cds-WP_067437980.1 4.24e-02 100 cds-WP_067437984.1 4.44e-01 100 cds-WP_067437987.1 5.37e-01 100 cds-WP_079164740.1 6.21e-01 100 cds-WP_067438001.1 6.51e-02 36_[+1(7.95e-05)]_14 cds-WP_067438024.1 8.94e-01 100 cds-WP_067438029.1 8.11e-01 100 cds-WP_079165169.1 7.16e-01 100 cds-WP_067438048.1 5.99e-01 100 cds-WP_067438054.1 3.88e-01 100 cds-WP_067438104.1 9.17e-02 100 cds-WP_067438135.1 4.09e-01 100 cds-WP_067438215.1 2.75e-02 10_[+1(8.67e-05)]_40 cds-WP_225988401.1 2.04e-01 100 cds-WP_067433314.1 4.19e-01 100 cds-WP_067433301.1 4.80e-01 100 cds-WP_067433224.1 3.03e-01 100 cds-WP_079164567.1 8.39e-03 31_[+1(2.20e-05)]_19 cds-WP_067433216.1 8.87e-01 100 cds-WP_067433156.1 7.34e-01 100 cds-WP_067433111.1 4.08e-01 100 cds-WP_067433078.1 6.70e-06 42_[+1(1.55e-07)]_8 cds-WP_067433044.1 6.75e-01 100 cds-WP_225988406.1 4.66e-01 100 cds-WP_067432814.1 5.08e-01 100 cds-WP_067432787.1 6.59e-01 100 cds-WP_067432775.1 7.60e-01 100 cds-WP_067432769.1 4.65e-01 100 cds-WP_067445400.1 7.64e-01 100 cds-WP_079165120.1 8.36e-01 100 rplU 1.53e-01 100 rpmA 1.24e-02 24_[+1(1.48e-05)]_26 cds-WP_107406612.1 6.55e-01 100 holA 3.45e-01 100 rpsT 6.22e-01 100 hrcA 7.92e-01 100 cds-WP_067432459.1 5.30e-02 14_[+2(8.67e-05)]_46 cds-WP_067432385.1 7.13e-01 100 cds-WP_067432373.1 4.11e-01 100 cds-WP_067432337.1 2.40e-02 5_[+1(1.80e-05)]_45 cds-WP_067432312.1 3.73e-01 100 cds-WP_067432284.1 3.63e-02 100 cds-WP_107406825.1 9.47e-01 100 cds-WP_067432246.1 4.00e-01 100 cds-WP_079164540.1 6.11e-01 100 cds-WP_067432227.1 7.16e-01 100 cds-WP_067432205.1 8.18e-01 100 cds-WP_079164533.1 2.36e-05 34_[+1(8.39e-09)]_16 cds-WP_067432099.1 3.50e-01 100 cds-WP_067432053.1 3.77e-01 100 cds-WP_067432027.1 9.26e-01 100 cds-WP_067431958.1 3.35e-02 18_[+2(8.67e-05)]_42 cds-WP_079164531.1 4.73e-01 100 cds-WP_067431937.1 8.52e-01 100 cds-WP_067431935.1 9.11e-02 100 cds-WP_067431901.1 6.46e-02 100 cds-WP_067431889.1 5.61e-01 100 cds-WP_079164526.1 3.67e-02 100 cds-WP_067431659.1 7.08e-01 100 cds-WP_067431580.1 8.31e-01 100 cds-WP_225988417.1 5.32e-01 100 cds-WP_067431536.1 6.47e-01 100 cds-WP_067431506.1 6.03e-01 100 cds-WP_067431430.1 4.46e-01 100 cds-WP_067445298.1 4.65e-01 100 cds-WP_107406597.1 5.14e-02 100 cds-WP_067431274.1 7.78e-03 100 cds-WP_067431268.1 8.53e-01 100 cds-WP_067431097.1 4.10e-01 100 cds-WP_067431035.1 4.04e-01 100 dnaE 6.74e-01 100 cds-WP_182449159.1 1.10e-03 46_[+1(1.43e-06)]_4 polA 8.77e-01 100 rpsA 7.52e-01 100 cds-WP_067430704.1 8.04e-01 100 cds-WP_067430696.1 5.93e-01 100 cds-WP_067430650.1 3.57e-02 7_[+1(5.11e-05)]_43 cds-WP_067430562.1 4.20e-01 100 cds-WP_067430482.1 5.12e-01 100 cds-WP_067430471.1 7.42e-01 100 cds-WP_067430438.1 6.45e-01 100 cds-WP_067430382.1 1.25e-01 100 cds-WP_079165102.1 4.98e-01 100 cds-WP_067430370.1 9.99e-01 100 cds-WP_067430351.1 7.50e-01 100 cds-WP_107406587.1 2.72e-01 100 cds-WP_067430268.1 1.33e-01 100 cds-WP_067430265.1 5.95e-01 100 cds-WP_067430250.1 1.43e-02 14_[+1(1.20e-05)]_36 cds-WP_067430247.1 2.77e-02 100 cds-WP_067430234.1 7.67e-01 100 cds-WP_067430225.1 5.34e-02 100 cds-WP_067430106.1 6.92e-01 100 cds-WP_067430062.1 9.09e-01 100 scpB 1.50e-05 48_[+1(3.00e-09)]_2 cds-WP_067429942.1 6.66e-01 100 cds-SLCG_RS34915 2.88e-01 100 dnaE_2 5.34e-01 100 cds-WP_067429827.1 1.67e-01 100 cds-WP_067429820.1 3.39e-01 100 cds-WP_067429808.1 8.33e-01 100 cds-WP_067429775.1 9.12e-01 100 cds-WP_067429749.1 2.57e-01 100 cds-WP_067429747.1 6.20e-01 100 cds-WP_067445195.1 3.91e-01 100 cds-WP_067429700.1 5.22e-01 100 soxR 3.26e-01 100 cds-WP_067429670.1 7.98e-01 100 cds-WP_067429613.1 1.82e-01 100 cds-WP_067429601.1 5.73e-01 100 cds-WP_067429546.1 6.65e-01 100 mtnA_2 1.38e-01 100 cds-WP_067445191.1 1.06e-01 100 cds-WP_067429462.1 5.48e-01 100 cds-WP_067429451.1 5.26e-01 100 cds-WP_067429448.1 9.21e-05 25_[+1(7.70e-07)]_25 cds-WP_067429415.1 4.70e-02 100 cds-WP_067429366.1 6.84e-01 100 cds-WP_067429348.1 8.99e-01 100 cds-WP_067429341.1 3.74e-01 100 cds-WP_067429337.1 1.73e-01 100 infC 3.67e-01 100 rpmI 3.94e-01 100 rplT 2.27e-01 100 cds-WP_067429264.1 4.26e-05 8_[+1(2.05e-07)]_42 cds-WP_067429182.1 3.98e-01 100 cds-WP_067429131.1 3.59e-01 100 cds-WP_067429064.1 1.52e-02 100 cds-WP_067429041.1 9.50e-01 100 cds-WP_067442277.1 9.95e-01 100 cds-WP_067442307.1 6.25e-01 100 cds-WP_067442316.1 3.97e-01 100 cds-WP_067442336.1 4.16e-01 100 cds-WP_152039041.1 7.65e-01 100 cds-WP_067442374.1 7.98e-01 100 cds-WP_107406730.1 5.09e-01 100 cds-WP_067442398.1 9.24e-01 100 cds-WP_067442427.1 9.04e-01 100 cds-WP_067442482.1 4.93e-01 100 cds-WP_067442498.1 4.83e-12 53_[+2(1.50e-15)]_7 cds-WP_067446085.1 5.16e-01 100 cds-WP_067442543.1 8.81e-01 100 cds-WP_067446096.1 7.00e-02 100 cds-WP_067442597.1 6.03e-01 100 cds-WP_067442660.1 5.41e-01 100 cds-WP_067442690.1 3.51e-01 100 cds-WP_067442702.1 1.35e-01 100 cds-WP_067442728.1 6.17e-01 100 cds-WP_067442739.1 6.74e-01 100 cds-WP_067442752.1 1.21e-01 100 cds-WP_067442759.1 7.63e-01 100 cds-WP_067442817.1 7.55e-01 100 fusA_2 8.11e-01 100 cds-WP_067442855.1 5.10e-01 100 cds-WP_079164929.1 7.21e-03 16_[+1(1.48e-05)]_34 cds-WP_067442871.1 3.97e-01 100 cds-WP_067442882.1 3.67e-01 100 cds-WP_067442886.1 8.45e-01 100 cds-WP_067442898.1 3.10e-03 [+1(8.80e-06)]_50 cds-WP_067442902.1 6.18e-01 100 cds-WP_182449250.1 2.05e-01 100 cds-WP_067442916.1 2.99e-01 100 cds-WP_067442925.1 1.64e-01 100 cds-WP_067442935.1 3.00e-01 100 cds-WP_067442943.1 9.17e-01 100 cds-WP_067442960.1 8.02e-01 100 cds-WP_067442970.1 3.22e-01 100 cds-WP_067442972.1 2.08e-01 100 cds-WP_067442973.1 3.96e-01 100 cds-WP_067442993.1 7.23e-02 100 cds-WP_182449329.1 7.03e-01 100 cds-WP_067443012.1 8.97e-01 100 cds-WP_067443013.1 7.63e-01 100 cds-WP_067443027.1 7.03e-01 100 cds-WP_067443030.1 7.99e-05 24_[+1(1.55e-07)]_26 cds-WP_067443037.1 4.03e-01 100 cds-WP_067443038.1 1.18e-01 100 cds-WP_067443051.1 1.16e-03 36_[+1(4.26e-05)]_14 cds-WP_067443052.1 5.62e-01 100 cds-WP_067443066.1 4.14e-01 100 cds-WP_067443069.1 5.94e-02 100 cds-WP_067443074.1 7.18e-01 100 cds-WP_067443077.1 3.22e-01 100 cds-WP_067443107.1 2.64e-01 100 cds-WP_067443129.1 3.68e-01 100 cds-WP_067443144.1 8.42e-01 100 cds-WP_067443159.1 5.54e-01 100 cds-WP_067443173.1 1.49e-01 100 cds-WP_079164941.1 2.30e-01 100 cds-WP_067443194.1 6.00e-03 11_[+2(6.17e-05)]_49 cds-WP_257785205.1 6.61e-02 100 cds-WP_067443209.1 1.34e-01 100 cds-WP_067443221.1 8.55e-01 100 cds-WP_067443230.1 1.80e-01 100 cds-WP_225988447.1 1.41e-01 100 cds-WP_067443244.1 8.74e-01 100 cds-WP_067443250.1 4.54e-01 100 cds-WP_067443268.1 4.55e-01 100 cds-WP_067443271.1 1.61e-01 100 cds-WP_067443274.1 5.89e-01 100 cds-WP_067443278.1 8.95e-01 100 nsrR 1.34e-01 100 cds-WP_067443290.1 4.33e-01 100 cds-WP_067443296.1 3.33e-02 100 cds-WP_067443303.1 5.50e-01 100 cds-WP_107406743.1 1.50e-01 100 cds-WP_067443316.1 6.64e-01 100 cds-WP_067446253.1 6.37e-01 100 cds-WP_067443323.1 2.33e-01 100 cds-WP_079164956.1 4.46e-01 100 cds-WP_067443328.1 4.97e-01 100 cds-WP_067443340.1 5.28e-01 100 cds-WP_067443344.1 4.43e-01 100 cds-WP_067443350.1 1.21e-02 1_[+1(8.80e-06)]_49 cds-WP_067443352.1 5.90e-03 100 cds-WP_067443368.1 7.36e-01 100 cds-WP_067443377.1 7.16e-01 100 cds-WP_067443396.1 3.61e-01 100 sigJ_2 5.45e-01 100 cds-WP_067443404.1 6.62e-01 100 cds-WP_067443409.1 3.25e-01 100 cds-WP_067443416.1 6.96e-01 100 otr(A) 5.21e-01 100 tuf_3 3.41e-01 100 cds-WP_067443431.1 3.09e-01 100 cds-WP_067443435.1 4.59e-01 100 cds-WP_067443437.1 4.11e-04 42_[+1(1.12e-06)]_8 cds-WP_067443448.1 7.48e-02 100 cds-WP_079164969.1 6.30e-01 100 cds-WP_225988457.1 9.10e-04 50_[+1(2.35e-07)] cds-WP_225988458.1 2.85e-01 100 cds-WP_067443508.1 8.22e-01 100 cds-WP_079164973.1 3.34e-01 100 cds-WP_067443512.1 3.21e-01 100 cds-SLCG_RS42100 4.44e-02 41_[+1(3.54e-05)]_9 cds-WP_067443533.1 7.87e-01 100 cds-WP_225988539.1 4.96e-01 100 cds-WP_107406748.1 5.25e-01 100 cds-WP_225988461.1 1.54e-01 100 cds-WP_067446336.1 4.94e-01 100 cds-WP_067443592.1 7.18e-02 100 cds-SLCG_RS42475 6.38e-01 100 cds-WP_067443612.1 8.96e-01 100 cds-WP_067443645.1 6.07e-02 100 cds-WP_152039053.1 8.09e-01 100 cds-WP_159425403.1 6.33e-01 100 cds-WP_067443683.1 3.36e-01 100 cds-WP_067443688.1 5.74e-02 100 cds-WP_225988466.1 4.49e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: DESKTOP-5852F15 ********************************************************************************