RID: 5ZUGUZY4016 Job Title:Protein Sequence Program: BLASTP Query: unnamed protein product ID: lcl|Query_92978(amino acid) Length: 380 Database: swissprot Non-redundant UniProtKB/SwissProt sequences Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa... Turnip yello... NA 12154 791 791 100% 0.0 100.00 1844 P10358.2 RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa... Turnip yello... NA 31751 790 790 100% 0.0 100.00 1844 P28477.1 RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa... Turnip yello... NA 12155 776 776 100% 0.0 97.89 1844 P20128.1 RecName: Full=RNA replicase polyprotein [Kennedya yellow mosai... Kennedya yel... NA 36392 383 383 99% 3e-119 53.26 1874 P36304.1 RecName: Full=RNA replicase polyprotein [Erysimum latent virus] Erysimum lat... NA 12152 374 374 98% 2e-116 51.74 1748 P35928.1 RecName: Full=RNA replicase polyprotein [Eggplant mosaic virus] Eggplant mos... NA 12151 369 369 95% 3e-114 50.69 1839 P20126.2 RecName: Full=RNA replicase polyprotein [Ononis yellow mosaic... Ononis yello... NA 12153 351 351 96% 3e-108 49.86 1776 P20127.1 RecName: Full=Genome polyprotein; Includes: RecName:... Maize rayado... NA 652669 314 314 99% 3e-95 43.12 2027 Q91TW9.1 RecName: Full=RNA replication protein; Includes: RecName:... Grapevine fl... NA 652668 292 292 83% 1e-87 47.65 1949 Q8UZB6.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73473 94.4 94.4 60% 1e-19 30.56 1884 P27738.1 RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5... Apple chloro... NA 73472 90.5 90.5 60% 3e-18 30.16 1885 P54891.1 RecName: Full=RNA replication protein; AltName: Full=152 kDa... Foxtail mosa... NA 12179 89.0 89.0 69% 8e-18 26.12 1335 P22168.1 RecName: Full=RNA replication protein; Includes: RecName:... Botrytis vir... NA 686946 83.6 83.6 70% 4e-16 25.00 1896 Q9DRA1.1 RecName: Full=RNA replication protein; AltName: Full=156 kDa... Plantago asi... NA 28354 83.6 83.6 65% 5e-16 27.78 1385 Q07518.1 RecName: Full=RNA replication polyprotein; AltName: Full=ORF1... Citrus leaf ... NA 686981 82.8 82.8 76% 1e-15 27.88 1962 Q91QZ3.1 RecName: Full=RNA replication protein; Includes: RecName:... Grapevine vi... NA 651358 82.4 82.4 59% 1e-15 31.76 1707 Q67704.1 RecName: Full=RNA replication protein; Includes: RecName:... Indian citru... NA 651357 78.2 78.2 62% 3e-14 27.53 1658 Q918W3.1 RecName: Full=RNA replication polyprotein; AltName: Full=223 k... Blueberry sc... NA 31722 42.7 42.7 61% 0.004 24.25 1967 Q65652.1 RecName: Full=RNA replication polyprotein; AltName: Full=ORF1... Apple stem p... NA 651356 42.4 42.4 33% 0.008 27.46 2183 Q64962.1 Alignments: >RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus] Sequence ID: P10358.2 Length: 1844 Range 1: 880 to 1259 Score:791 bits(2043), Expect:0.0, Method:Compositional matrix adjust., Identities:380/380(100%), Positives:380/380(100%), Gaps:0/380(0%) Query 1 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD 60 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD Sbjct 880 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD 939 Query 61 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR 120 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR Sbjct 940 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR 999 Query 121 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD 180 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD Sbjct 1000 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD 1059 Query 181 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI 240 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI Sbjct 1060 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI 1119 Query 241 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD 300 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD Sbjct 1120 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD 1179 Query 301 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF 360 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF Sbjct 1180 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF 1239 Query 361 PQLKLITSPLTTRGPKLNGA 380 PQLKLITSPLTTRGPKLNGA Sbjct 1240 PQLKLITSPLTTRGPKLNGA 1259 >RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus (isolate TYMC)] Sequence ID: P28477.1 Length: 1844 Range 1: 880 to 1259 Score:790 bits(2040), Expect:0.0, Method:Compositional matrix adjust., Identities:380/380(100%), Positives:380/380(100%), Gaps:0/380(0%) Query 1 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD 60 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD Sbjct 880 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD 939 Query 61 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR 120 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR Sbjct 940 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR 999 Query 121 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD 180 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD Sbjct 1000 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD 1059 Query 181 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI 240 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI Sbjct 1060 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI 1119 Query 241 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD 300 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD Sbjct 1120 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD 1179 Query 301 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF 360 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF Sbjct 1180 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF 1239 Query 361 PQLKLITSPLTTRGPKLNGA 380 PQLKLITSPLTTRGPKLNGA Sbjct 1240 PQLKLITSPLTTRGPKLNGA 1259 >RecName: Full=RNA replicase polyprotein; AltName: Full=206 kDa polyprotein; AltName: Full=206K; Contains: RecName: Full=Methyltransferase/Protease/Ubiquitinyl hydrolase; AltName: Full=98 kDa protein; AltName: Full=MET/PRO; Contains: RecName: Full=Putative helicase; AltName: Full=42 kDa protein; AltName: Full=HEL; Contains: RecName: Full=RNA-directed RNA polymerase; AltName: Full=66 kDa protein; AltName: Full=POL [Turnip yellow mosaic virus (Australian isolate)] Sequence ID: P20128.1 Length: 1844 Range 1: 880 to 1259 Score:776 bits(2003), Expect:0.0, Method:Compositional matrix adjust., Identities:372/380(98%), Positives:376/380(98%), Gaps:0/380(0%) Query 1 QPSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLD 60 QPSAKGHPSD LIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNL+SNMKNGFDG+LSLLD Sbjct 880 QPSAKGHPSDSLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLVSNMKNGFDGILSLLD 939 Query 61 VSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR 120 VSTGQRTGPTPK+ IIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR Sbjct 940 VSTGQRTGPTPKDAIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFR 999 Query 121 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD 180 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD Sbjct 1000 VSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILAD 1059 Query 181 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI 240 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI Sbjct 1060 PALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQI 1119 Query 241 HSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD 300 HSFNAWQG+IGSVSTP DQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD Sbjct 1120 HSFNAWQGIIGSVSTPQDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLD 1179 Query 301 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF 360 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF Sbjct 1180 NYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLF 1239 Query 361 PQLKLITSPLTTRGPKLNGA 380 PQLKLITSPLTTR PKLNGA Sbjct 1240 PQLKLITSPLTTRSPKLNGA 1259 >RecName: Full=RNA replicase polyprotein [Kennedya yellow mosaic virus (strain Jervis Bay)] Sequence ID: P36304.1 Length: 1874 Range 1: 910 to 1289 Score:383 bits(983), Expect:3e-119, Method:Compositional matrix adjust., Identities:204/383(53%), Positives:259/383(67%), Gaps:7/383(1%) Query 2 PSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDV 61 PS++ HP L +A FK G++LPFS H+ TS+ HAKNLISNMKNGFDGV+S ++ Sbjct 910 PSSQQHP---LEQAALRFKYQGSHLPFSSFHSFTTSVQHAKNLISNMKNGFDGVMSTIEP 966 Query 62 STGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFRV 121 S + G +P+E+ I +D +D KT + H AGFAGCGKT P+Q LL T+ F FRV Sbjct 967 SIRHQPGHSPREKFIALDAMIDLARPKTVSMFHLAGFAGCGKTKPLQSLLSTRPFHSFRV 1026 Query 122 SCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADP 181 S PTTELR EWK M L SQ++RF TWESS+LK ++ILVIDEIYK+PRGYLDL ILADP Sbjct 1027 STPTTELRNEWKKDMNLPASQAFRFCTWESSLLKQTKILVIDEIYKLPRGYLDLCILADP 1086 Query 182 ALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIH 241 LELVIILGDPLQGEYHS S SSNH+L SET RLLP+ID YCWW+YR+P IA LF + Sbjct 1087 CLELVIILGDPLQGEYHSTSPHSSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVP 1146 Query 242 SFNAWQGVIG-SVSTPHDQSP---VLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAII 297 SFN +G +V T +P L NS A++ LG+ + TIS+SQG+T + I Sbjct 1147 SFNRSEGHYQMAVRTADSYTPGHFNLVNSVATANAVIQLGFPATTISASQGVTHHNRVTI 1206 Query 298 VLDNYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFP 357 +LD +++ LS +N LVALTRS GV+F+G + GTN SS MFS A I + FP Sbjct 1207 LLDKHSRLLSPSNTLVALTRSTVGVEFLGDIGSLSGTNNSSDMFSRAIYRQPINLSSSFP 1266 Query 358 SLFPQLKLITSPLTTRGPKLNGA 380 +F L L+ P++ R +L G+ Sbjct 1267 RIFHLLPLLNKPISRRSTRLIGS 1289 >RecName: Full=RNA replicase polyprotein [Erysimum latent virus] Sequence ID: P35928.1 Length: 1748 Range 1: 779 to 1151 Score:374 bits(960), Expect:2e-116, Method:Compositional matrix adjust., Identities:193/373(52%), Positives:254/373(68%), Gaps:0/373(0%) Query 2 PSAKGHPSDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDV 61 PS + L R++ F+++GN LP + H+ + S AKNL SNMKNGFDG+L+ L Sbjct 779 PSRSQTNENSLRRSLLGFRLNGNLLPIDQVHSFTSEPSRAKNLASNMKNGFDGILTTLAA 838 Query 62 STGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFRV 121 + +GP+P++RI +D D KT ++H +GFAGCGKT+PIQQLLKT F +FRV Sbjct 839 LSSLSSGPSPRDRIFTLDGICDFALPKTVDLIHLSGFAGCGKTHPIQQLLKTPHFHNFRV 898 Query 122 SCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADP 181 PTT LR+EWK+ M L +WRF+TWES++LK + ILVIDEIYK+PRGYLDLS++ADP Sbjct 899 VTPTTNLRSEWKSDMALPAHHNWRFSTWESALLKHAEILVIDEIYKLPRGYLDLSLIADP 958 Query 182 ALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIH 241 ++LVI+LGDPLQGEYHS S SSN RL SE RLLP+ID YC+WSYR+P+C+A+LF + Sbjct 959 TVKLVILLGDPLQGEYHSTSAHSSNLRLSSEIPRLLPFIDYYCYWSYRVPKCVAKLFSLP 1018 Query 242 SFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDN 301 FN +G I + + L NSH+ + G+ + TISSSQG TF DPA I LD Sbjct 1019 CFNPSEGFIKTTLDFFPSANNLVNSHSVVHISEACGWNAVTISSSQGCTFSDPAFIHLDR 1078 Query 302 YTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFP 361 T LS +N LVALTRSRSGV F G +++ +GSS MFS A++ I + +FP + Sbjct 1079 NTALLSPSNCLVALTRSRSGVYFKGDFTFLSSLSGSSRMFSLAYSGQPIHLPDFFPEIVF 1138 Query 362 QLKLITSPLTTRG 374 QL +IT+PLT R Sbjct 1139 QLNMITAPLTKRS 1151 >RecName: Full=RNA replicase polyprotein [Eggplant mosaic virus] Sequence ID: P20126.2 Length: 1839 Range 1: 883 to 1241 Score:369 bits(946), Expect:3e-114, Method:Compositional matrix adjust., Identities:184/363(51%), Positives:247/363(68%), Gaps:4/363(1%) Query 12 LIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPTP 71 L+R FK++G +LPF++A+ H +SI+HAKNLISNMKNGFDG++S L T GP+P Sbjct 883 LVRQALRFKLNGEFLPFTQAYAHESSITHAKNLISNMKNGFDGIMSSL---TDSSKGPSP 939 Query 72 KERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPTTELRTE 131 +E++ +D +D + ++H AGFAGCGKT+PIQ+LL+T F DFR+SCPT ELR+E Sbjct 940 REKLTTLDSLIDVAAPREVSLIHIAGFAGCGKTHPIQKLLQTSPFHDFRISCPTNELRSE 999 Query 132 WKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVIILGD 191 WK M+ WRF+TWESS+LK S ILVIDEIYK+PRGYLDLSILADP L LVIILGD Sbjct 1000 WKRDMQPTAENVWRFSTWESSLLKHSEILVIDEIYKLPRGYLDLSILADPTLSLVIILGD 1059 Query 192 PLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIG 251 PLQGEYHS S SSNH LPSE R YID YC+WS+RIP+ IA LF + N +G + Sbjct 1060 PLQGEYHSTSPHSSNHFLPSEVHRFKSYIDCYCFWSHRIPKQIASLFGVVCHNTNEGFVR 1119 Query 252 SVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANG 311 ++++ S LTN+ ++L+ +G+ + TIS+ + +TF + I+LD +T LS N Sbjct 1120 ALTSHPPNSKNLTNATNTALSLQQMGHHAITISARR-VTFTEAHTILLDRHTNLLSPNNC 1178 Query 312 LVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQLKLITSPLT 371 LVALTRSR+GV F+G + G++ MFS A I ++ FP + P L + P+ Sbjct 1179 LVALTRSRTGVYFVGNLHLASNSFGTNYMFSQALCQGTIDLNNVFPHIMPHLPKMYEPIR 1238 Query 372 TRG 374 +R Sbjct 1239 SRS 1241 >RecName: Full=RNA replicase polyprotein [Ononis yellow mosaic virus] Sequence ID: P20127.1 Length: 1776 Range 1: 818 to 1178 Score:351 bits(901), Expect:3e-108, Method:Compositional matrix adjust., Identities:184/369(50%), Positives:249/369(67%), Gaps:11/369(2%) Query 12 LIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTGPT- 70 L+RA FK + +LPF +AH H S+ HAKNLISNMKNGFDG+ T Q +GP+ Sbjct 818 LVRAALRFKYNDAFLPFWDAHQHTISVPHAKNLISNMKNGFDGI-------TSQLSGPSN 870 Query 71 --PKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPTTEL 128 PK +++++D +D + + V+H AGF GCGK++PIQ+LL+T F+ FR+S PT EL Sbjct 871 KSPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSHPIQKLLQTPAFRHFRLSVPTNEL 930 Query 129 RTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADPALELVII 188 R+EWK + L S+ WR TWE+++ KSS ILV+DEIYK+PRGYLDL +LADP+++LVI+ Sbjct 931 RSEWKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADPSIQLVIM 990 Query 189 LGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQG 248 LGDPLQGEYHS SSN RL SET RL YID YCWW+YR P+ +A LF + +FN+ +G Sbjct 991 LGDPLQGEYHSSHPSSSNSRLESETTRLSKYIDCYCWWTYRCPKAVADLFGVKTFNSNEG 1050 Query 249 VIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSS 308 I +V + P L NS A++ T SLG+ + TISSSQG+T+ DP ++LD ++ ++ Sbjct 1051 FIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHSLLITP 1110 Query 309 ANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQLKLITS 368 LVALTRSRSG+ F+G G+ G+S MFS A + M FP LF L LI Sbjct 1111 QTALVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMMSAFP-LFHTLPLIHE 1169 Query 369 PLTTRGPKL 377 P+ +R +L Sbjct 1170 PIRSRRHRL 1178 >RecName: Full=Genome polyprotein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase; Contains: RecName: Full=RNA replication protein; Contains: RecName: Full=Capsid protein CP1; Short=CP1; AltName: Full=Coat protein [Maize rayado fino virus isolate Costa Rica] Sequence ID: Q91TW9.1 Length: 2027 Range 1: 821 to 1194 Score:314 bits(805), Expect:3e-95, Method:Compositional matrix adjust., Identities:163/378(43%), Positives:227/378(60%), Gaps:5/378(1%) Query 4 AKGHPSDPLIRAMKSFKVSGN-YLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDVS 62 A P L A K F LPF + H H T + AKNLISNMKNGFDGV++ + Sbjct 821 ASSVPGADLAEACKRFVAPDRTVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPL 880 Query 63 TGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQLLKTKLFKDFRVS 122 + + +ER + +D LD + ++H AGFAGCGK++PI LL+T F+ F+++ Sbjct 881 DPK----SARERFLMLDSCLDIAAPRRVRLIHIAGFAGCGKSWPISHLLRTPAFRVFKLA 936 Query 123 CPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADPA 182 PTTELR EWK M+ WRF TWESS+LK++R+LVIDE+YKMPRGYLDL+I AD A Sbjct 937 VPTTELRDEWKALMDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAA 996 Query 183 LELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHS 242 ++ VI+LGDP+QGEYHS SSN RL E L PY+D YC+WS RIPQ +AR+ + + Sbjct 997 IQFVILLGDPIQGEYHSTHPSSSNARLSPEHRYLRPYVDFYCFWSRRIPQNVARVLDVPT 1056 Query 243 FNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNY 302 + G +L ++ S+ + GY + TI+SSQG T PA + LDN+ Sbjct 1057 TSTEMGFARYSQQFPFSGKILISARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNH 1116 Query 303 TKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQ 362 ++ LS + LVA+TRS+SG+ F G + GT+ ++ +FS + + + F +L P Sbjct 1117 SRRLSHQHSLVAITRSKSGIVFTGDKAAADGTSSANLLFSAVLLDRRLSVRSLFSALLPC 1176 Query 363 LKLITSPLTTRGPKLNGA 380 +T P T+R L GA Sbjct 1177 CPFVTEPPTSRAVLLRGA 1194 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Grapevine fleck virus isolate MT48] Sequence ID: Q8UZB6.1 Length: 1949 Range 1: 963 to 1275 Score:292 bits(748), Expect:1e-87, Method:Compositional matrix adjust., Identities:152/319(48%), Positives:208/319(65%), Gaps:9/319(2%) Query 9 SDPLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLISNMKNGFDGVLSLLDVSTGQRTG 68 + P A F+++ LP + H + ++ AKNL+SN+KNGFDG++S L S RT Sbjct 963 TSPFALAALRFRLNRQPLPIRQVHAYSIALPRAKNLVSNLKNGFDGLVSSLPAS--DRTN 1020 Query 69 PTPKERIIQ-IDHYLDTNPGKTTPV--VHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPT 125 P +IQ +DH D P + PV +H AGFAGCGK+YPIQQLL T+ F+ FRV PT Sbjct 1021 LLP---LIQALDHTADFPPARP-PVGLIHIAGFAGCGKSYPIQQLLATQTFRHFRVVTPT 1076 Query 126 TELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILADPALEL 185 TELR EWK A++L G SWR +TWE+++ K + +LVIDE+YK+PRGYLDL++LADP +E Sbjct 1077 TELRHEWKRALKLEGPSSWRVSTWETALAKRASVLVIDEVYKLPRGYLDLALLADPTVEF 1136 Query 186 VIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNA 245 VIILGDPLQG Y+ + DSSNHRL E L P+ID YC W+ R+P+ +A F + + N Sbjct 1137 VIILGDPLQGSYNPTNPDSSNHRLIPEEDHLRPFIDFYCLWTRRLPRLVADFFGVPTTNP 1196 Query 246 WQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKW 305 +G + S QSP+L S + + + G+R+ T ++SQG T+ P I LD + Sbjct 1197 TRGHLAFASLNTTQSPLLVPSDSMARALTAGGHRAITYAASQGSTYPAPVHIFLDRNSNL 1256 Query 306 LSSANGLVALTRSRSGVQF 324 +++ LVALTRSRSGV F Sbjct 1257 VTNHVALVALTRSRSGVHF 1275 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate PLUM P863)] Sequence ID: P27738.1 Length: 1884 Range 1: 1059 to 1303 Score:94.4 bits(233), Expect:1e-19, Method:Compositional matrix adjust., Identities:77/252(31%), Positives:116/252(46%), Gaps:31/252(12%) Query 97 GFAGCGKTYPIQQLLKTKLF--KDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSI- 153 GFAG GK++ IQ L++T+ + V CP L +W G T+ES++ Sbjct 1059 GFAGSGKSHAIQNLIQTEFKGSQGIMVICPRRFLAKDWSEK----GVDEKDIKTFESALK 1114 Query 154 --LKSSRILVIDEIYKMPRGYLDLSILA---DPALE--LVIILGDPLQGEYHSQSKDSSN 206 +K R+ ++DEI +P+G+ DL +L + L+ ++ +GDPLQ Y D+ Sbjct 1115 SDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAGYFCPKDDNYL 1174 Query 207 HRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQ------- 259 R E RL Y W+SYRI + IA+ I + N + G+ S D Sbjct 1175 SR-EGEIKRLFKGGVNYKWYSYRINKFIAKKLAIETMNDFIGIDEQSSIYKDMPSAHHFM 1233 Query 260 -------SPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGL 312 +L S +++ G T SQGLTF + +IVL K S A+ + Sbjct 1234 EKKGNHIEVILVASMVEKELYSNYG-NVMTFGESQGLTF-NCGVIVLSEEAKLCSDAHIM 1291 Query 313 VALTRSRSGVQF 324 VA+TR R G F Sbjct 1292 VAITRFRRGFCF 1303 >RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa protein; AltName: Full=ORF1 protein; AltName: Full=RNA replicase [Apple chlorotic leaf spot virus (isolate APPLE)] Sequence ID: P54891.1 Length: 1885 Range 1: 1060 to 1304 Score:90.5 bits(223), Expect:3e-18, Method:Compositional matrix adjust., Identities:76/252(30%), Positives:115/252(45%), Gaps:31/252(12%) Query 97 GFAGCGKTYPIQQLLKTKLF--KDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSI- 153 GFAG GK++ IQ L++T+ + V CP L +W G T+ES++ Sbjct 1060 GFAGSGKSHAIQNLIQTEFKGSQGVMVICPRRFLAKDWSEK----GVDEKDIKTFESALK 1115 Query 154 --LKSSRILVIDEIYKMPRGYLDLSILA---DPALE--LVIILGDPLQGEYHSQSKDSSN 206 +K R+ ++DEI +P+G+ DL +L + L+ ++ +GDPLQ Y D+ Sbjct 1116 SDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAGYFCPKDDNYL 1175 Query 207 HRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQ------- 259 R E RL Y W+SYRI + IA+ I + N + G+ D Sbjct 1176 SR-EGEIKRLFKDGVNYKWYSYRINKFIAKKLAIETMNDFIGIDEQNLIYKDMPSAHHFM 1234 Query 260 -------SPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGL 312 +L S +++ G T SQGLTF + +IVL K S A+ + Sbjct 1235 ENKGNHIEVILVPSMIEKELYSNYG-NVMTFGESQGLTF-NCGVIVLSEEAKLCSDAHIM 1292 Query 313 VALTRSRSGVQF 324 VA+TR R G F Sbjct 1293 VAITRFRRGFCF 1304 >RecName: Full=RNA replication protein; AltName: Full=152 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Foxtail mosaic virus] Sequence ID: P22168.1 Length: 1335 Range 1: 564 to 826 Score:89.0 bits(219), Expect:8e-18, Method:Compositional matrix adjust., Identities:70/268(26%), Positives:125/268(46%), Gaps:10/268(3%) Query 60 DVSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFA---GFAGCGKTYPIQQLLKTKLF 116 DV G +TG K++ + L + +H A G G GK+Y +Q+ ++ Sbjct 564 DVMAG-KTGAILKQQPFEWKTTLKRKTKEEPKEIHLAVLHGAGGSGKSYALQEFMRNNSD 622 Query 117 KDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSIL-KSSRILVIDEIYKMPRGYLDL 175 V PT ELR +WK + H + F T+E+++L I ++D+ K+PRGY++ Sbjct 623 TPITVILPTNELRADWKKKLPAHDKDT--FMTYENALLCPRGDIFIMDDYTKLPRGYIEA 680 Query 176 SILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSYRIPQCIA 235 + PAL L+I+ GDP Q E+ ++D+ + L ++ + + ++R P+ +A Sbjct 681 FVQNAPALSLLILTGDPNQAEHFETTEDNEINSLAPASVVFGKFSRYHINATHRNPRNLA 740 Query 236 RLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPA 295 ++S + + L S + SLG R+ T + QG+T P Sbjct 741 NALGVYSETPGEVKVLYTRNIKTGYHNLVPSQMKMRNYASLGQRASTYAGCQGIT--APR 798 Query 296 I-IVLDNYTKWLSSANGLVALTRSRSGV 322 + I+LD+ T + AL+R+ + V Sbjct 799 VQIILDSDTPRCTRQVMYTALSRATTEV 826 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase; Includes: RecName: Full=Methyltransferase [Botrytis virus F NZL/Howitt] Sequence ID: Q9DRA1.1 Length: 1896 Range 1: 1017 to 1295 Score:83.6 bits(205), Expect:4e-16, Method:Compositional matrix adjust., Identities:70/280(25%), Positives:127/280(45%), Gaps:13/280(4%) Query 58 LLDVSTGQRTGPTPKERIIQIDHYLDT----NPGKTTPVVHFAGFAGCGKTYP----IQQ 109 L D+ G G P Q+D Y+D+ ++ V++F G G GK+ ++ Sbjct 1017 LRDLKRGN-IGTIPTAEAEQLDAYIDSWAVNGFNRSVHVIYFCGLPGTGKSRRCMKMTER 1075 Query 110 LLKTK--LFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSR--ILVIDEI 165 LLK L + R+ PT LR ++ S+ T+E+ I + S +L++DE Sbjct 1076 LLKENKYLAQTVRIVTPTDNLRNSVARQLKPPTESSYSVQTYETPIRQPSLGPVLIVDEY 1135 Query 166 YKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCW 225 KMP G+L+ + +P +++VI DP QG + ++ D+ R+PS T + Y Y Sbjct 1136 GKMPAGWLETVLFLNPRVQMVIFTADPTQGIFRTRIPDAYCCRIPSSTEAIASYAHEYRR 1195 Query 226 WSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISS 285 S R +AR + + + G I + + + + + N+ G + T ++ Sbjct 1196 VSDRPAPGVARALGLPTTSRRPGQIETSTELNVDWITVRPEGERAAWHNTWGGKVYTYAT 1255 Query 286 SQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFM 325 QG TF +V++ T++ + ALTR ++ + Sbjct 1256 CQGETFHRAYQMVINGNTRFWDDRDLFAALTRGSGTLRLI 1295 >RecName: Full=RNA replication protein; AltName: Full=156 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Plantago asiatica mosaic virus] Sequence ID: Q07518.1 Length: 1385 Range 1: 662 to 900 Score:83.6 bits(205), Expect:5e-16, Method:Compositional matrix adjust., Identities:70/252(28%), Positives:117/252(46%), Gaps:15/252(5%) Query 92 VVHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWES 151 V+H AG G GK+ +Q LL+ V PT ELR +W +L + +F T+E Sbjct 662 VIHGAG--GSGKSQALQTLLRQDHSLPIEVVLPTNELRLDW--LKKLPHNPPEQFRTFER 717 Query 152 SILKS-SRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLP 210 + + S S +++ D+ K+P+GYL+ L LELVI+ GDP Q +H ++++ +LP Sbjct 718 AFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLP 777 Query 211 SETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLTNSHASS 270 T + Y + R + +A ++S N+ + P +L S Sbjct 778 PATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKK 837 Query 271 LTFNSLGYRSCTISSSQGLTFCDPAI-IVLDNYTKWLSSANGLVALTRSRSGVQFMGPSS 329 F G++ + + QG+T P + I+LDN T + AL+R+ + F+ Sbjct 838 AAFTDAGHKVSSYAGCQGIT--APKVQILLDNDTTMCTKEVLYTALSRAVDSIHFV---- 891 Query 330 YVGGTNGSSAMF 341 TN S+ F Sbjct 892 ---NTNAQSSAF 900 >RecName: Full=RNA replication polyprotein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Citrus leaf blotch virus FRA/SRA-153] Sequence ID: Q91QZ3.1 Length: 1962 Range 1: 1159 to 1461 Score:82.8 bits(203), Expect:1e-15, Method:Compositional matrix adjust., Identities:87/312(28%), Positives:142/312(45%), Gaps:32/312(10%) Query 92 VVHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWES 151 V GFAG GK+ +Q L ++ +F V P T L +W +EL ++ + +T+E Sbjct 1159 VTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEK 1218 Query 152 SILKSSR----ILVIDEIYKMPRGYLDLSI--LADPALEL-VIILGDPLQGEYHSQSKDS 204 I K+ + ++VIDE+ P GYLDL + LAD +I+L DPLQ YH++ D Sbjct 1219 FI-KTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKM-DE 1276 Query 205 SNHRLPSETLRLLPYIDM-YCWWSYRIPQCIARLFQIHSFNA-----------WQGVIGS 252 S + RL+ ++ Y + ++R+ + R F + FN + V Sbjct 1277 SILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSI 1336 Query 253 VSTPHD-QSP---VLTNSHASSLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSS 308 S D Q P +L S F+ + T SQGLTF + I+L + + Sbjct 1337 PSICSDRQEPCDVLLVESDLEKKAFSPI-INVMTFGESQGLTF-NHVCILLSESSAASNE 1394 Query 309 ANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFNNSLIIMDRYFPSLFPQLKLITS 368 +VALTR+R+ +F S+++GG ++ S++ ++ F +L L+ Sbjct 1395 FRWMVALTRART--RFSLCSTFLGGIEEFKVKRKESLITSILQGEKI---TFNRLNLMLK 1449 Query 369 PLTTRGPKLNGA 380 R K NG Sbjct 1450 CNLIRREKENGC 1461 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Grapevine virus A isolate Is 151] Sequence ID: Q67704.1 Length: 1707 Range 1: 927 to 1145 Score:82.4 bits(202), Expect:1e-15, Method:Compositional matrix adjust., Identities:74/233(32%), Positives:113/233(48%), Gaps:21/233(9%) Query 97 GFAGCGKTYPIQQLLKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKS 156 GFAG GK++ Q +LK + V P LR +W + S+ R T+E + + Sbjct 927 GFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWVAKI----SKKHRVVTFEVAFMDD 982 Query 157 --SRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSK----DSSNHRLP 210 + +VIDEI +P GY+DL I A LV +LGDPLQ YHS+ ++S + Sbjct 983 YGCKDIVIDEIGLLPPGYIDLVIAAHQPRTLV-LLGDPLQSTYHSKRDNVVLEASQEDVF 1041 Query 211 SETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAW-QGVIGSVSTPHDQSPVLTNSHAS 269 + LPY+ C +S+R+P+ +LF+I A + + S P + + A Sbjct 1042 NRVRGKLPYL---C-YSHRLPRN-CKLFEIECMGAESEKRVVYRSNRLKDEPTICATRAM 1096 Query 270 SLTFNSLGYRSCTISSSQGLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGV 322 S Y T+S +QGL+F +I LD + + +VALTRSR + Sbjct 1097 KEEKGSGWY---TVSETQGLSF-KSCLIYLDEHWAKKEDEDVMVALTRSRGEI 1145 >RecName: Full=RNA replication protein; Includes: RecName: Full=RNA-directed RNA polymerase; Includes: RecName: Full=Helicase [Indian citrus ringspot virus K1] Sequence ID: Q918W3.1 Length: 1658 Range 1: 934 to 1170 Score:78.2 bits(191), Expect:3e-14, Method:Compositional matrix adjust., Identities:68/247(28%), Positives:112/247(45%), Gaps:18/247(7%) Query 90 TPVVHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTW 149 T V+H AG G GK++ +QQ + + + V PT EL +W S F T+ Sbjct 934 TTVIHGAG--GSGKSHLLQQWVSSTERGNVVVILPTIELLRDWLNKCPTTPKDS--FKTF 989 Query 150 ESSILKSSR-ILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHR 208 E +++++S ++++D+ K+P GY++ + +L+++ GDP Q YH ++ ++ Sbjct 990 EKALVQNSAPVVIMDDYSKLPPGYIEAYVALKGQCKLLVLTGDPRQSHYHEENPEALIST 1049 Query 209 LPSETLRLLPYIDMYCWW----SYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVLT 264 L T Y YC + ++R A ++S + S P L Sbjct 1050 LDPAT----DYFSKYCTYNINATHRNATTFANALGVYSERKLPVSVTCSSYQKSGWPTLV 1105 Query 265 NSHASSLTFNSLGYRSCTISSSQGLTFCDPAI-IVLDNYTKWLSSANGLVALTRSRSGVQ 323 S N +G RS T + QGLT P + IVLDN T S AL+R+ + Sbjct 1106 PSILKKTALNDMGQRSLTYAGCQGLT--TPKVQIVLDNATPLCSEQVMYTALSRAVDQIH 1163 Query 324 FM--GPS 328 F GP+ Sbjct 1164 FFNTGPN 1170 >RecName: Full=RNA replication polyprotein; AltName: Full=223 kDa protein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Helicase [Blueberry scorch virus] Sequence ID: Q65652.1 Length: 1967 Range 1: 1166 to 1424 Score:42.7 bits(99), Expect:0.004, Method:Compositional matrix adjust., Identities:65/268(24%), Positives:112/268(41%), Gaps:44/268(16%) Query 97 GFAGCGKTYPIQQLLKTKLFKDFRVSCPTTEL----RTEWKTA---MELHGSQSWRFNTW 149 G GCGK+ +++L K P L E + A M G + ++ T+ Sbjct 1166 GTFGCGKSRLFKEILFKLCGKSVCYISPRKALCDSFDDEIRKARGNMGERGIKHYKSLTF 1225 Query 150 ESSILKSSRI-----LVIDEIYKMPRGYLDLSIL-ADPALELVIILGDPLQGEYHSQSKD 203 E +IL++S++ ++IDEI P GYLDL +L A P ++ LGDP Q +Y S+ Sbjct 1226 EKAILQASKLHKGSLVIIDEIQLYPPGYLDLLLLLAGPTMKY-FALGDPCQSDYDSEKDR 1284 Query 204 SSNHRLPSETLRLLPYIDMYCWWSYRIPQCIARLFQIHSFNAWQGVIGSVSTPHDQSPVL 263 + + S+ LL I+ + + I ++R FQ F + +P+ Sbjct 1285 TILGSVRSDVFELLDGIE----YKFNI---LSRRFQSSLFRGRLPCLMYEEDLEAGAPLR 1337 Query 264 TNSHASSLTFNSLGYRSCTISS----------------------SQGLTFCDPAIIVLDN 301 S+ ++ R C +SS S G+TF D +++ + Sbjct 1338 LIDGLESIDTSAAYSRCCLVSSFEEKKIVNAYFGERTKCLTFGESTGMTF-DVGCVLITS 1396 Query 302 YTKWLSSANGLVALTRSRSGVQFMGPSS 329 + S + AL+R R + F+ +S Sbjct 1397 ISAHTSEQRWITALSRFRKDIVFVNAAS 1424 >RecName: Full=RNA replication polyprotein; AltName: Full=ORF1 protein; Includes: RecName: Full=Viral methyltransferase; Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate dioxygenase; Includes: RecName: Full=Protease; Includes: RecName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Helicase [Apple stem pitting virus PA66] Sequence ID: Q64962.1 Length: 2183 Range 1: 1369 to 1510 Score:42.4 bits(98), Expect:0.008, Method:Compositional matrix adjust., Identities:39/142(27%), Positives:57/142(40%), Gaps:16/142(11%) Query 92 VVHFAGFAGCGKTYPIQQLLKTKLFKDFRVSCPTTEL-----------RTEWKTAMELHG 140 ++ G GCGK+ ++ ++ K P L R K + Sbjct 1369 LIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDLGLARVGGKKTGKSKD 1428 Query 141 SQSWRFNTWESSIL-----KSSRILVIDEIYKMPRGYLDLSILADPALELVIILGDPLQG 195 ++ R T+E IL K +VIDEI P GY+DL IL +II GDP Q Sbjct 1429 LKNVRVKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQS 1488 Query 196 EYHSQSKDSSNHRLPSETLRLL 217 +Y S S+ +R+L Sbjct 1489 DYDCSSDRHIFAGSESDIMRIL 1510